BLASTX nr result
ID: Zingiber23_contig00023511
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00023511
(282 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006656718.1| PREDICTED: pentatricopeptide repeat-containi... 114 1e-23
ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group] g... 113 2e-23
gb|EEC80145.1| hypothetical protein OsI_21946 [Oryza sativa Indi... 113 2e-23
ref|XP_004964651.1| PREDICTED: pentatricopeptide repeat-containi... 112 4e-23
gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays] 112 5e-23
ref|XP_002437979.1| hypothetical protein SORBIDRAFT_10g005810 [S... 108 6e-22
ref|XP_006453556.1| hypothetical protein CICLE_v10007511mg [Citr... 105 6e-21
ref|XP_006474049.1| PREDICTED: pentatricopeptide repeat-containi... 105 8e-21
ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containi... 104 1e-20
gb|ESW26860.1| hypothetical protein PHAVU_003G154400g [Phaseolus... 101 1e-19
gb|EOY31480.1| Pentatricopeptide repeat (PPR) superfamily protei... 100 2e-19
emb|CBI36552.3| unnamed protein product [Vitis vinifera] 100 3e-19
ref|XP_002309359.1| pentatricopeptide repeat-containing family p... 100 3e-19
ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containi... 100 3e-19
ref|XP_002533229.1| pentatricopeptide repeat-containing protein,... 99 6e-19
ref|XP_003610281.1| Pentatricopeptide repeat-containing protein ... 99 8e-19
ref|XP_006343621.1| PREDICTED: pentatricopeptide repeat-containi... 94 2e-17
ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 92 5e-17
ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containi... 92 5e-17
ref|XP_004242990.1| PREDICTED: pentatricopeptide repeat-containi... 92 7e-17
>ref|XP_006656718.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Oryza brachyantha]
Length = 672
Score = 114 bits (285), Expect = 1e-23
Identities = 52/91 (57%), Positives = 75/91 (82%)
Frame = +3
Query: 3 IVTGLISMYSKCANICAAELLFREIEFPDIIAHNAMISGYSINGLVASSVCLFKKLLALG 182
++TGLIS+Y+KC ++ +A LF +E PD++A+NA+ISGYS+NG+V SS+ LF +L+ LG
Sbjct: 134 VLTGLISLYAKCGHVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSLDLFTELVTLG 193
Query: 183 VETPNSSTMVGLIPVFNPFGYELLVTCIHGF 275
+ PNSST+V LIPV++PFG+ELL C+HGF
Sbjct: 194 LR-PNSSTLVALIPVYSPFGHELLAQCLHGF 223
>ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR)
repeat-containing protein-like [Oryza sativa Japonica
Group] gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza
sativa Japonica Group] gi|125596288|gb|EAZ36068.1|
hypothetical protein OsJ_20378 [Oryza sativa Japonica
Group]
Length = 787
Score = 113 bits (283), Expect = 2e-23
Identities = 53/91 (58%), Positives = 74/91 (81%)
Frame = +3
Query: 3 IVTGLISMYSKCANICAAELLFREIEFPDIIAHNAMISGYSINGLVASSVCLFKKLLALG 182
++TGLIS+YSKC ++ +A LF +E PD++A+NA+ISGYS+NG+V SSV LF +L+ LG
Sbjct: 249 VLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLG 308
Query: 183 VETPNSSTMVGLIPVFNPFGYELLVTCIHGF 275
+ PNSST+V LIPV +PFG++LL C+HGF
Sbjct: 309 L-WPNSSTLVALIPVHSPFGHDLLAQCLHGF 338
>gb|EEC80145.1| hypothetical protein OsI_21946 [Oryza sativa Indica Group]
Length = 603
Score = 113 bits (283), Expect = 2e-23
Identities = 53/91 (58%), Positives = 74/91 (81%)
Frame = +3
Query: 3 IVTGLISMYSKCANICAAELLFREIEFPDIIAHNAMISGYSINGLVASSVCLFKKLLALG 182
++TGLIS+YSKC ++ +A LF +E PD++A+NA+ISGYS+NG+V SSV LF +L+ LG
Sbjct: 249 VLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVDLFTELMTLG 308
Query: 183 VETPNSSTMVGLIPVFNPFGYELLVTCIHGF 275
+ PNSST+V LIPV +PFG++LL C+HGF
Sbjct: 309 L-WPNSSTLVALIPVHSPFGHDLLAQCLHGF 338
>ref|XP_004964651.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Setaria italica]
Length = 788
Score = 112 bits (281), Expect = 4e-23
Identities = 52/93 (55%), Positives = 73/93 (78%)
Frame = +3
Query: 3 IVTGLISMYSKCANICAAELLFREIEFPDIIAHNAMISGYSINGLVASSVCLFKKLLALG 182
+VTGL+S+Y+KC ++ A LF +E PD++A+NA+ISGYS+NG+V SS LFK+L A G
Sbjct: 250 VVTGLMSLYAKCGDMVCARFLFDRMEDPDLVAYNALISGYSVNGMVESSTELFKELAASG 309
Query: 183 VETPNSSTMVGLIPVFNPFGYELLVTCIHGFSI 281
PNSST+V +IPV++PFG+ELL C+HGF +
Sbjct: 310 WR-PNSSTLVAVIPVYSPFGHELLARCLHGFVV 341
Score = 55.8 bits (133), Expect = 6e-06
Identities = 26/73 (35%), Positives = 48/73 (65%)
Frame = +3
Query: 3 IVTGLISMYSKCANICAAELLFREIEFPDIIAHNAMISGYSINGLVASSVCLFKKLLALG 182
++T LI MY+KC +I A +F ++ ++++ NAMISGY ++G A ++ L+K +L+
Sbjct: 452 VMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKTMLSAH 511
Query: 183 VETPNSSTMVGLI 221
+ P SST + ++
Sbjct: 512 I-LPTSSTFLSVL 523
>gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
Length = 787
Score = 112 bits (280), Expect = 5e-23
Identities = 52/93 (55%), Positives = 75/93 (80%)
Frame = +3
Query: 3 IVTGLISMYSKCANICAAELLFREIEFPDIIAHNAMISGYSINGLVASSVCLFKKLLALG 182
+VTGL+S+YSKC ++ +A+ LF ++ PD++A+NA+ISGYS+NG+V SSV LFK+L A G
Sbjct: 249 VVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASG 308
Query: 183 VETPNSSTMVGLIPVFNPFGYELLVTCIHGFSI 281
PNSST+V +IPV++PFG+ELL C+H F +
Sbjct: 309 WR-PNSSTLVAVIPVYSPFGHELLARCLHAFVV 340
Score = 55.5 bits (132), Expect = 7e-06
Identities = 27/73 (36%), Positives = 47/73 (64%)
Frame = +3
Query: 3 IVTGLISMYSKCANICAAELLFREIEFPDIIAHNAMISGYSINGLVASSVCLFKKLLALG 182
++T LI MY+KC +I A +F ++ ++++ NAMISGY ++G A ++ L+K +L
Sbjct: 451 VMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDAR 510
Query: 183 VETPNSSTMVGLI 221
+ P SST + +I
Sbjct: 511 I-LPTSSTFLSVI 522
>ref|XP_002437979.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
gi|241916202|gb|EER89346.1| hypothetical protein
SORBIDRAFT_10g005810 [Sorghum bicolor]
Length = 657
Score = 108 bits (271), Expect = 6e-22
Identities = 52/93 (55%), Positives = 72/93 (77%)
Frame = +3
Query: 3 IVTGLISMYSKCANICAAELLFREIEFPDIIAHNAMISGYSINGLVASSVCLFKKLLALG 182
+VTGL+S+YSKC ++ A LF +E PD++A+NA+ISGYS+NG+V SSV LFK+L A
Sbjct: 249 VVTGLMSLYSKCGDMDCARSLFDRMEDPDLVAYNALISGYSVNGMVESSVELFKELAASD 308
Query: 183 VETPNSSTMVGLIPVFNPFGYELLVTCIHGFSI 281
PNSST+V +IPV++PFG+ELL C+H F +
Sbjct: 309 WR-PNSSTLVAVIPVYSPFGHELLARCLHAFVV 340
>ref|XP_006453556.1| hypothetical protein CICLE_v10007511mg [Citrus clementina]
gi|557556782|gb|ESR66796.1| hypothetical protein
CICLE_v10007511mg [Citrus clementina]
Length = 784
Score = 105 bits (262), Expect = 6e-21
Identities = 54/93 (58%), Positives = 68/93 (73%)
Frame = +3
Query: 3 IVTGLISMYSKCANICAAELLFREIEFPDIIAHNAMISGYSINGLVASSVCLFKKLLALG 182
++TGL+S YSKC + AELLFR+I PD+I+ NAMISGY+ NG SS+ LF++LLA
Sbjct: 247 VLTGLVSFYSKCGEVEGAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLA-S 305
Query: 183 VETPNSSTMVGLIPVFNPFGYELLVTCIHGFSI 281
E NSST+VGLIPVF PFG+ L CIH F +
Sbjct: 306 AERVNSSTIVGLIPVFYPFGHLHLTNCIHNFCL 338
>ref|XP_006474049.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Citrus sinensis]
Length = 784
Score = 105 bits (261), Expect = 8e-21
Identities = 54/93 (58%), Positives = 68/93 (73%)
Frame = +3
Query: 3 IVTGLISMYSKCANICAAELLFREIEFPDIIAHNAMISGYSINGLVASSVCLFKKLLALG 182
++TGL+S YSKC + AELLFR+I PD+I+ NAMISGY+ NG SS+ LF++LLA
Sbjct: 247 VLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLA-S 305
Query: 183 VETPNSSTMVGLIPVFNPFGYELLVTCIHGFSI 281
E NSST+VGLIPVF PFG+ L CIH F +
Sbjct: 306 AERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCL 338
>ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Brachypodium distachyon]
Length = 796
Score = 104 bits (259), Expect = 1e-20
Identities = 50/89 (56%), Positives = 70/89 (78%)
Frame = +3
Query: 3 IVTGLISMYSKCANICAAELLFREIEFPDIIAHNAMISGYSINGLVASSVCLFKKLLALG 182
+VTGLIS+Y+KC ++ A LF +E PD++ +NA+ISGYSING+V SSV LFK+L+ +G
Sbjct: 258 VVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMG 317
Query: 183 VETPNSSTMVGLIPVFNPFGYELLVTCIH 269
+ P+SST+V LIPV +PFG+E L C+H
Sbjct: 318 LR-PSSSTLVALIPVHSPFGHEPLAGCLH 345
>gb|ESW26860.1| hypothetical protein PHAVU_003G154400g [Phaseolus vulgaris]
Length = 778
Score = 101 bits (251), Expect = 1e-19
Identities = 51/93 (54%), Positives = 70/93 (75%)
Frame = +3
Query: 3 IVTGLISMYSKCANICAAELLFREIEFPDIIAHNAMISGYSINGLVASSVCLFKKLLALG 182
++TGLIS++SKC ++ A+LLF I+ PD++++NAMISG+S NG S V LF++LL G
Sbjct: 241 VLTGLISVFSKCGDVDTAKLLFGMIKKPDLVSYNAMISGFSCNGETESGVKLFRELLVSG 300
Query: 183 VETPNSSTMVGLIPVFNPFGYELLVTCIHGFSI 281
E +SSTMVGLIPV +PFG+ L CIHGF +
Sbjct: 301 -ERVSSSTMVGLIPVSSPFGHLHLACCIHGFCV 332
>gb|EOY31480.1| Pentatricopeptide repeat (PPR) superfamily protein [Theobroma
cacao]
Length = 801
Score = 100 bits (249), Expect = 2e-19
Identities = 55/93 (59%), Positives = 67/93 (72%)
Frame = +3
Query: 3 IVTGLISMYSKCANICAAELLFREIEFPDIIAHNAMISGYSINGLVASSVCLFKKLLALG 182
++TGLIS+YSK I AA+LLF EI PD+++ NAMISGY+ NG SV LFK+LL G
Sbjct: 264 VLTGLISLYSKGGEIEAAKLLFGEIGRPDLVSCNAMISGYTSNGESECSVRLFKQLLGSG 323
Query: 183 VETPNSSTMVGLIPVFNPFGYELLVTCIHGFSI 281
E NSST+VGLIPV +PFGY L CIH F +
Sbjct: 324 -EKVNSSTIVGLIPVLSPFGYLNLTNCIHSFCV 355
>emb|CBI36552.3| unnamed protein product [Vitis vinifera]
Length = 726
Score = 100 bits (248), Expect = 3e-19
Identities = 52/91 (57%), Positives = 65/91 (71%)
Frame = +3
Query: 3 IVTGLISMYSKCANICAAELLFREIEFPDIIAHNAMISGYSINGLVASSVCLFKKLLALG 182
++TGL +YSKC I A LLF +I PD++++NAMISGY+ N SSV LFK+LL G
Sbjct: 244 VITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSG 303
Query: 183 VETPNSSTMVGLIPVFNPFGYELLVTCIHGF 275
E NSS++VGLIPVF PFG+ L CIHGF
Sbjct: 304 -EKVNSSSIVGLIPVFFPFGHLHLTRCIHGF 333
>ref|XP_002309359.1| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|222855335|gb|EEE92882.1|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 605
Score = 100 bits (248), Expect = 3e-19
Identities = 51/93 (54%), Positives = 68/93 (73%)
Frame = +3
Query: 3 IVTGLISMYSKCANICAAELLFREIEFPDIIAHNAMISGYSINGLVASSVCLFKKLLALG 182
++TGLIS++SKC + A LLF EI D+I+ NAMISG++ NG SV LFK+LL+ G
Sbjct: 68 LLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSG 127
Query: 183 VETPNSSTMVGLIPVFNPFGYELLVTCIHGFSI 281
E +SST+VGLIPV++PFG+ L CIHGF +
Sbjct: 128 -ERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCV 159
>ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
[Vitis vinifera]
Length = 781
Score = 100 bits (248), Expect = 3e-19
Identities = 52/91 (57%), Positives = 65/91 (71%)
Frame = +3
Query: 3 IVTGLISMYSKCANICAAELLFREIEFPDIIAHNAMISGYSINGLVASSVCLFKKLLALG 182
++TGL +YSKC I A LLF +I PD++++NAMISGY+ N SSV LFK+LL G
Sbjct: 244 VITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSG 303
Query: 183 VETPNSSTMVGLIPVFNPFGYELLVTCIHGF 275
E NSS++VGLIPVF PFG+ L CIHGF
Sbjct: 304 -EKVNSSSIVGLIPVFFPFGHLHLTRCIHGF 333
>ref|XP_002533229.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223526949|gb|EEF29150.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 575
Score = 99.0 bits (245), Expect = 6e-19
Identities = 51/93 (54%), Positives = 67/93 (72%)
Frame = +3
Query: 3 IVTGLISMYSKCANICAAELLFREIEFPDIIAHNAMISGYSINGLVASSVCLFKKLLALG 182
+VTGLIS+YSKC ++ A +LF +I D+I++NAMISG + NG SSV LF++ L G
Sbjct: 254 VVTGLISLYSKCGDVDTASILFTDIGRKDLISYNAMISGLTFNGETESSVRLFEEWLDSG 313
Query: 183 VETPNSSTMVGLIPVFNPFGYELLVTCIHGFSI 281
E NSS++VGLIPV+ PFGY L CIHGF +
Sbjct: 314 -EKVNSSSIVGLIPVYCPFGYLPLTNCIHGFGV 345
>ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511336|gb|AES92478.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 783
Score = 98.6 bits (244), Expect = 8e-19
Identities = 51/93 (54%), Positives = 68/93 (73%)
Frame = +3
Query: 3 IVTGLISMYSKCANICAAELLFREIEFPDIIAHNAMISGYSINGLVASSVCLFKKLLALG 182
++TGLIS+YSKC ++ A LLFR I PD+IA+NAMISG++ NG SV LF++LL G
Sbjct: 246 VLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSG 305
Query: 183 VETPNSSTMVGLIPVFNPFGYELLVTCIHGFSI 281
E +SST+VGLIP+ +PFG+ L IHGF +
Sbjct: 306 -ERVSSSTIVGLIPLHSPFGHLHLACSIHGFCV 337
>ref|XP_006343621.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like isoform X1 [Solanum tuberosum]
gi|565353404|ref|XP_006343622.1| PREDICTED:
pentatricopeptide repeat-containing protein
At4g30700-like isoform X2 [Solanum tuberosum]
Length = 791
Score = 94.0 bits (232), Expect = 2e-17
Identities = 51/93 (54%), Positives = 65/93 (69%)
Frame = +3
Query: 3 IVTGLISMYSKCANICAAELLFREIEFPDIIAHNAMISGYSINGLVASSVCLFKKLLALG 182
++TGLISMYSKC ++ A+LLF I PD+I+ NAMI+G+ N SSV LF++LL G
Sbjct: 254 VLTGLISMYSKCGDVSTAKLLFGMIREPDLISCNAMIAGFCFNNENESSVRLFRELLVHG 313
Query: 183 VETPNSSTMVGLIPVFNPFGYELLVTCIHGFSI 281
E NSST+VGLIPV PFG+ L IHGF +
Sbjct: 314 -EKVNSSTIVGLIPVSCPFGHLTLTCSIHGFCV 345
>ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g30700-like [Cucumis sativus]
Length = 788
Score = 92.4 bits (228), Expect = 5e-17
Identities = 47/93 (50%), Positives = 65/93 (69%)
Frame = +3
Query: 3 IVTGLISMYSKCANICAAELLFREIEFPDIIAHNAMISGYSINGLVASSVCLFKKLLALG 182
++TGLIS+YSKC C +LF +I+ PD+I++NAMISGY+ N S+V LF++LLA G
Sbjct: 251 VLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASG 310
Query: 183 VETPNSSTMVGLIPVFNPFGYELLVTCIHGFSI 281
+ NSST+VGLIPV+ PF + L I S+
Sbjct: 311 -QRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSL 342
>ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 788
Score = 92.4 bits (228), Expect = 5e-17
Identities = 47/93 (50%), Positives = 65/93 (69%)
Frame = +3
Query: 3 IVTGLISMYSKCANICAAELLFREIEFPDIIAHNAMISGYSINGLVASSVCLFKKLLALG 182
++TGLIS+YSKC C +LF +I+ PD+I++NAMISGY+ N S+V LF++LLA G
Sbjct: 251 VLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASG 310
Query: 183 VETPNSSTMVGLIPVFNPFGYELLVTCIHGFSI 281
+ NSST+VGLIPV+ PF + L I S+
Sbjct: 311 -QRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSL 342
>ref|XP_004242990.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Solanum lycopersicum]
Length = 791
Score = 92.0 bits (227), Expect = 7e-17
Identities = 50/93 (53%), Positives = 66/93 (70%)
Frame = +3
Query: 3 IVTGLISMYSKCANICAAELLFREIEFPDIIAHNAMISGYSINGLVASSVCLFKKLLALG 182
++TGLIS+YSKC ++ A+LLF I+ PD+I+ NAMI+G+ N SSV LF++LL G
Sbjct: 254 VLTGLISLYSKCGDVLTAKLLFGMIKEPDLISCNAMIAGFCFNDENESSVRLFRELLVHG 313
Query: 183 VETPNSSTMVGLIPVFNPFGYELLVTCIHGFSI 281
E NSST+VGLIPV PFG+ L IHGF +
Sbjct: 314 -EKVNSSTIVGLIPVSCPFGHLNLTCSIHGFCV 345