BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00019687
         (998 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284465.1| PREDICTED: general transcription factor IIH ...   345   2e-92
ref|XP_002307429.2| basal transcription factor complex subunit-r...   342   2e-91
gb|EOY16261.1| Basal transcription factor complex subunit-relate...   335   1e-89
ref|XP_006472762.1| PREDICTED: general transcription factor IIH ...   333   6e-89
ref|XP_004152842.1| PREDICTED: general transcription factor IIH ...   327   4e-87
ref|XP_004290858.1| PREDICTED: general transcription factor IIH ...   325   1e-86
ref|XP_004290857.1| PREDICTED: general transcription factor IIH ...   325   1e-86
gb|EMJ24450.1| hypothetical protein PRUPE_ppa009386mg [Prunus pe...   322   1e-85
ref|XP_006416613.1| hypothetical protein EUTSA_v10008316mg [Eutr...   319   1e-84
ref|NP_001045748.1| Os02g0125800 [Oryza sativa Japonica Group] g...   318   2e-84
ref|XP_004952041.1| PREDICTED: general transcription factor IIH ...   318   2e-84
ref|XP_006472763.1| PREDICTED: general transcription factor IIH ...   317   5e-84
ref|XP_003573866.1| PREDICTED: general transcription factor IIH ...   316   8e-84
dbj|BAK06937.1| predicted protein [Hordeum vulgare subsp. vulgare]    315   2e-83
ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arab...   314   3e-83
ref|NP_564050.1| basal transcription factor complex subunit-rela...   314   4e-83
ref|XP_006648269.1| PREDICTED: general transcription factor IIH ...   311   2e-82
ref|NP_001131186.1| hypothetical protein [Zea mays] gi|194688300...   311   2e-82
ref|XP_006305456.1| hypothetical protein CARUB_v10009867mg [Caps...   310   7e-82
ref|XP_006347459.1| PREDICTED: general transcription factor IIH ...   308   2e-81

>ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis
           vinifera] gi|302141830|emb|CBI19033.3| unnamed protein
           product [Vitis vinifera]
          Length = 297

 Score =  345 bits (884), Expect = 2e-92
 Identities = 181/302 (59%), Positives = 204/302 (67%), Gaps = 2/302 (0%)
 Frame = -2

Query: 949 ASAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXX 770
           A  PSKLYS+D       LD NPFFW                TA L FSK L+HV+    
Sbjct: 2   APVPSKLYSDDVSLLVVLLDTNPFFWS---------------TASLPFSKFLSHVLAFLN 46

Query: 769 XXXXXXXXXXXXLITTGVNSCSYIYDSEEGGAES--ATGKVPAACSKILLRLEEFLTKDR 596
                       +I TG NSC++I+DS    A      G++PA CS +L +LEEF+T D 
Sbjct: 47  SILLINQLNQVVVIATGCNSCNFIFDSSSVPANPNLENGRMPALCSNLLQKLEEFVTGDE 106

Query: 595 LLGKDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAV 416
            L K+                    LCYIQR+FR+G  HPQPRILCLQGSPDGPEQYVAV
Sbjct: 107 KLSKEV--LAAGIGSSLLSGSLSMALCYIQRVFRTGPLHPQPRILCLQGSPDGPEQYVAV 164

Query: 415 MNAIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQ 236
           MNAIF+AQRSM+PIDSCV+G QHSAFLQQASYITGGVYLKPQ LDGLFQYLS+VFATDL 
Sbjct: 165 MNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYITGGVYLKPQQLDGLFQYLSTVFATDLH 224

Query: 235 SRSFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHIDL 56
           SR FLQLP+PAGVDFRASCFCHK TIDMGY+CSVCLSIFCK HKKCSTCGS F  +  D 
Sbjct: 225 SRRFLQLPKPAGVDFRASCFCHKNTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQAQSDG 284

Query: 55  NA 50
           N+
Sbjct: 285 NS 286


>ref|XP_002307429.2| basal transcription factor complex subunit-related family protein
           [Populus trichocarpa] gi|550339079|gb|EEE94425.2| basal
           transcription factor complex subunit-related family
           protein [Populus trichocarpa]
          Length = 298

 Score =  342 bits (876), Expect = 2e-91
 Identities = 174/301 (57%), Positives = 205/301 (68%), Gaps = 2/301 (0%)
 Frame = -2

Query: 946 SAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXXX 767
           S PSKLYS+D       LD NPFFW               P + LSFS+ L+HV+     
Sbjct: 3   SVPSKLYSDDVSLVVVLLDTNPFFWT--------------PPSSLSFSQFLSHVLAFVNS 48

Query: 766 XXXXXXXXXXXLITTGVNSCSYIYDSEEGGAE--SATGKVPAACSKILLRLEEFLTKDRL 593
                      +I +G N+C YIYDS    ++  S  G++P+  S +L +LEEF+ KD  
Sbjct: 49  ILLLNQLNQVVVIASGYNTCDYIYDSSSDASQLGSEDGRMPSLYSNLLQKLEEFMIKDEK 108

Query: 592 LGKDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVM 413
           LGK+  +                  CYIQR+FRSG  HPQPRILCLQGSPDGPEQYVAVM
Sbjct: 109 LGKEQSQRAIKSSLLSGSLSMAL--CYIQRVFRSGPLHPQPRILCLQGSPDGPEQYVAVM 166

Query: 412 NAIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQS 233
           NAIF+AQRSM+PIDSC +G  +SAFLQQASYITGGVY+KPQHLDGLFQYL++VFATDL S
Sbjct: 167 NAIFSAQRSMVPIDSCYVGAHNSAFLQQASYITGGVYVKPQHLDGLFQYLTTVFATDLHS 226

Query: 232 RSFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHIDLN 53
           RSF+QLPRPAGVDFRASCFCHK TIDMGY+CSVCLSIFC  HKKCSTCGS F  +  D +
Sbjct: 227 RSFIQLPRPAGVDFRASCFCHKTTIDMGYICSVCLSIFCNHHKKCSTCGSVFGQAQSDTS 286

Query: 52  A 50
           +
Sbjct: 287 S 287


>gb|EOY16261.1| Basal transcription factor complex subunit-related isoform 1
           [Theobroma cacao]
          Length = 296

 Score =  335 bits (860), Expect = 1e-89
 Identities = 171/292 (58%), Positives = 198/292 (67%), Gaps = 1/292 (0%)
 Frame = -2

Query: 949 ASAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXX 770
           ASAPSKLY++D       +D NPFFW                 + LSFS+ L+HV+    
Sbjct: 2   ASAPSKLYADDVSLVVVLVDTNPFFWS---------------ASSLSFSQFLSHVLAFLN 46

Query: 769 XXXXXXXXXXXXLITTGVNSCSYIYDSEEGGAES-ATGKVPAACSKILLRLEEFLTKDRL 593
                       +I TG NSC+YI+DS     +S   G++P  CS +L +LEEFL KD  
Sbjct: 47  AILTLNQLNQVVVIATGYNSCNYIFDSSSDLNQSFENGRMPVMCSSLLQKLEEFLIKDEQ 106

Query: 592 LGKDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVM 413
           L K+  +                  CYIQR+FRSG  HP PRILCLQGSPDGPEQYVA+M
Sbjct: 107 LSKEVPEGRIKSSLLSGSLSMAL--CYIQRVFRSGALHPHPRILCLQGSPDGPEQYVAIM 164

Query: 412 NAIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQS 233
           NAIF+AQRSM+PIDSC MG Q+SAFLQQASYITGGV+ KPQHLDGLFQYL ++FATDL S
Sbjct: 165 NAIFSAQRSMVPIDSCYMGAQNSAFLQQASYITGGVHHKPQHLDGLFQYLMTIFATDLHS 224

Query: 232 RSFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDF 77
           RSFL LP+P GVDFRASCFCHK TIDMGY+CSVCLSIFCK HKKCSTCGS F
Sbjct: 225 RSFLHLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIFCKHHKKCSTCGSVF 276


>ref|XP_006472762.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
           X1 [Citrus sinensis]
          Length = 298

 Score =  333 bits (854), Expect = 6e-89
 Identities = 170/302 (56%), Positives = 200/302 (66%), Gaps = 1/302 (0%)
 Frame = -2

Query: 949 ASAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXX 770
           ASAPSKLYS+D       LD NPFFW                ++ LSFS+ L HV+    
Sbjct: 2   ASAPSKLYSDDVSLVVVLLDTNPFFWS---------------SSSLSFSQFLTHVLAFFN 46

Query: 769 XXXXXXXXXXXXLITTGVNSCSYIYDSEEGGAESA-TGKVPAACSKILLRLEEFLTKDRL 593
                       +I TG NSC Y+YDS   G +S   G++P+ C+ +L  LEEF+ KD  
Sbjct: 47  AILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ 106

Query: 592 LGKDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVM 413
           LGK   +                  CYIQR+FRSG  HPQPRILCLQGSPDGPEQYVA+M
Sbjct: 107 LGKQEPEGRIACSLLSGSLSMAL--CYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIM 164

Query: 412 NAIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQS 233
           NAIF+AQRSM+PIDSC +G Q+SAFLQQASYITGGV+ KPQ LDGLFQYL ++F TDL S
Sbjct: 165 NAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHS 224

Query: 232 RSFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHIDLN 53
           R+FLQLP+P GVDFRASCFCHK TIDMGY+CSVCLSI+CK  KKCSTCGS F  +    +
Sbjct: 225 RNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSD 284

Query: 52  AP 47
            P
Sbjct: 285 EP 286


>ref|XP_004152842.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
           sativus]
          Length = 295

 Score =  327 bits (838), Expect = 4e-87
 Identities = 169/301 (56%), Positives = 201/301 (66%), Gaps = 1/301 (0%)
 Frame = -2

Query: 949 ASAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXX 770
           ASAPSKLY++D       LD NPFFW                T+ L FSK L+HV+    
Sbjct: 2   ASAPSKLYADDVSLLVVLLDTNPFFWS---------------TSALPFSKFLSHVLAFLN 46

Query: 769 XXXXXXXXXXXXLITTGVNSCSYIYDSEEGGAESAT-GKVPAACSKILLRLEEFLTKDRL 593
                       +I TG  SC Y+Y+S          G++PA C+++L  LEEF+  D  
Sbjct: 47  SILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQ 106

Query: 592 LGKDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVM 413
             K+  K                  CYIQ++FRSG+ HPQPRILCLQGSPDGPEQYVA+M
Sbjct: 107 SIKEDPKGGTMSSLLSGSLSMAL--CYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIM 164

Query: 412 NAIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQS 233
           NAIF+AQRSM+PIDSC +G  +SAFLQQASYITGGVYLKPQ +DGLFQYLS+VF TDL S
Sbjct: 165 NAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHS 224

Query: 232 RSFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHIDLN 53
           R+FLQLP+  GVDFRASCFCHKKTIDMGYVCSVCLSIFCK HKKCSTCGS F  + ++L+
Sbjct: 225 RTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELD 284

Query: 52  A 50
           +
Sbjct: 285 S 285


>ref|XP_004290858.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
           2 [Fragaria vesca subsp. vesca]
          Length = 298

 Score =  325 bits (834), Expect = 1e-86
 Identities = 170/299 (56%), Positives = 199/299 (66%), Gaps = 1/299 (0%)
 Frame = -2

Query: 949 ASAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXX 770
           AS PSKLY++D       LD NPFFW                ++ L FSK L+HV+    
Sbjct: 2   ASVPSKLYADDVSLLMVLLDTNPFFWS---------------SSSLPFSKYLSHVLTFLN 46

Query: 769 XXXXXXXXXXXXLITTGVNSCSYIYDSEEG-GAESATGKVPAACSKILLRLEEFLTKDRL 593
                       +I TG +SCSYIYDS    G  S  G++PA CS +L +LEEF+ KD  
Sbjct: 47  SILLLNQLNQVVVIATGYSSCSYIYDSASAPGQGSDQGRMPALCSHLLKKLEEFVAKDEQ 106

Query: 592 LGKDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVM 413
           L K+                     CYIQ++FRSG +HP PRILCLQGS DGPEQYVA+M
Sbjct: 107 LLKEGSAEGIPSSLLSGSLSMAL--CYIQKVFRSGPQHPHPRILCLQGSSDGPEQYVAIM 164

Query: 412 NAIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQS 233
           NAIF+AQRSM+PIDSC MG  +SAFLQQASYITGGVYLKPQ  DGL QYL++VFATDL S
Sbjct: 165 NAIFSAQRSMVPIDSCYMGSNNSAFLQQASYITGGVYLKPQQPDGLLQYLTTVFATDLHS 224

Query: 232 RSFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHIDL 56
           R+FLQLP+ AGVDFRASCFCHKKTID GY+CSVCLSIFCK HKKCSTCGS F  +  ++
Sbjct: 225 RAFLQLPKSAGVDFRASCFCHKKTIDTGYICSVCLSIFCKHHKKCSTCGSVFGQAQSEV 283


>ref|XP_004290857.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
           1 [Fragaria vesca subsp. vesca]
          Length = 300

 Score =  325 bits (834), Expect = 1e-86
 Identities = 170/299 (56%), Positives = 199/299 (66%), Gaps = 1/299 (0%)
 Frame = -2

Query: 949 ASAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXX 770
           AS PSKLY++D       LD NPFFW                ++ L FSK L+HV+    
Sbjct: 2   ASVPSKLYADDVSLLMVLLDTNPFFWS---------------SSSLPFSKYLSHVLTFLN 46

Query: 769 XXXXXXXXXXXXLITTGVNSCSYIYDSEEG-GAESATGKVPAACSKILLRLEEFLTKDRL 593
                       +I TG +SCSYIYDS    G  S  G++PA CS +L +LEEF+ KD  
Sbjct: 47  SILLLNQLNQVVVIATGYSSCSYIYDSASAPGQGSDQGRMPALCSHLLKKLEEFVAKDEQ 106

Query: 592 LGKDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVM 413
           L K+                     CYIQ++FRSG +HP PRILCLQGS DGPEQYVA+M
Sbjct: 107 LLKEGSAEGIPSSLLSGSLSMAL--CYIQKVFRSGPQHPHPRILCLQGSSDGPEQYVAIM 164

Query: 412 NAIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQS 233
           NAIF+AQRSM+PIDSC MG  +SAFLQQASYITGGVYLKPQ  DGL QYL++VFATDL S
Sbjct: 165 NAIFSAQRSMVPIDSCYMGSNNSAFLQQASYITGGVYLKPQQPDGLLQYLTTVFATDLHS 224

Query: 232 RSFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHIDL 56
           R+FLQLP+ AGVDFRASCFCHKKTID GY+CSVCLSIFCK HKKCSTCGS F  +  ++
Sbjct: 225 RAFLQLPKSAGVDFRASCFCHKKTIDTGYICSVCLSIFCKHHKKCSTCGSVFGQAQSEV 283


>gb|EMJ24450.1| hypothetical protein PRUPE_ppa009386mg [Prunus persica]
          Length = 295

 Score =  322 bits (826), Expect = 1e-85
 Identities = 172/301 (57%), Positives = 201/301 (66%), Gaps = 1/301 (0%)
 Frame = -2

Query: 949 ASAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXX 770
           ASAPSKLY++D       LD NPFFW                ++ L FS  L+HV+    
Sbjct: 2   ASAPSKLYADDVSLLMVLLDTNPFFWS---------------SSSLPFSVFLSHVLTFLN 46

Query: 769 XXXXXXXXXXXXLITTGVNSCSYIYDSEEGGAE-SATGKVPAACSKILLRLEEFLTKDRL 593
                       +I TG NSCSYIYDS     + S  G++PA C  +L +LEEF+ +D  
Sbjct: 47  SILLLNQLNQVVVIATGYNSCSYIYDSSTSTNQGSDNGRMPARCVNLLQKLEEFVIEDEQ 106

Query: 592 LGKDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVM 413
           L K+  +                  CYIQR+FRSG  HPQPRILCLQGS DGPEQYVA+M
Sbjct: 107 LIKEGLREGIASSLLSGSLSMAL--CYIQRVFRSGPLHPQPRILCLQGSSDGPEQYVAIM 164

Query: 412 NAIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQS 233
           NAIF+AQRS +PIDSC MG  +SAFLQQASYITGGVYLKPQ  +GLFQYLS+VFATDL S
Sbjct: 165 NAIFSAQRS-VPIDSCYMGSSNSAFLQQASYITGGVYLKPQQPNGLFQYLSTVFATDLHS 223

Query: 232 RSFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHIDLN 53
           R+FLQLP+  GVDFRASCFCHKKTIDMGY+CSVCLSIFCK HKKCSTCGS F  +  D+N
Sbjct: 224 RAFLQLPKSLGVDFRASCFCHKKTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQAQSDVN 283

Query: 52  A 50
           +
Sbjct: 284 S 284


>ref|XP_006416613.1| hypothetical protein EUTSA_v10008316mg [Eutrema salsugineum]
           gi|557094384|gb|ESQ34966.1| hypothetical protein
           EUTSA_v10008316mg [Eutrema salsugineum]
          Length = 300

 Score =  319 bits (817), Expect = 1e-84
 Identities = 166/300 (55%), Positives = 197/300 (65%), Gaps = 3/300 (1%)
 Frame = -2

Query: 949 ASAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXX 770
           AS  SKLYS+D       LD NPFFW                T  + FS+ L+HV+    
Sbjct: 2   ASVASKLYSDDVSLLVLLLDTNPFFWS---------------TTSIKFSQFLSHVLAFLN 46

Query: 769 XXXXXXXXXXXXLITTGVNSCSYIYDSE---EGGAESATGKVPAACSKILLRLEEFLTKD 599
                       +I TG +SC YIYDS     G  ES+   +PA    +L +LE+F  KD
Sbjct: 47  AVLGLNQLNQVVVIATGYSSCDYIYDSSLTPNGNFESSGSGMPALFGSLLEKLEDFAAKD 106

Query: 598 RLLGKDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVA 419
             L K+ ++                 LCYIQR+FRSG  HPQPRILCLQGSPDGPEQYVA
Sbjct: 107 EELSKE-EEHEDRIASSLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVA 165

Query: 418 VMNAIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDL 239
           VMN+IF+AQR M+PIDSC +G Q+SAFLQQASYITGGV+  P+ LDGLFQYL+++FATDL
Sbjct: 166 VMNSIFSAQRLMVPIDSCYIGTQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDL 225

Query: 238 QSRSFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHID 59
            SR F+QLP+P GVDFRASCFCHKKTIDMGY+CSVCLSIFC+ HKKCSTCGS F  S +D
Sbjct: 226 HSRGFVQLPKPVGVDFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLD 285


>ref|NP_001045748.1| Os02g0125800 [Oryza sativa Japonica Group]
           gi|41053068|dbj|BAD08012.1| putative TFIIH basal
           transcription factor complex p34 subunit [Oryza sativa
           Japonica Group] gi|113535279|dbj|BAF07662.1|
           Os02g0125800 [Oryza sativa Japonica Group]
           gi|215768495|dbj|BAH00724.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 289

 Score =  318 bits (816), Expect = 2e-84
 Identities = 165/298 (55%), Positives = 196/298 (65%)
 Frame = -2

Query: 943 APSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXXXX 764
           A SKLYS+D       +D NP FW                TA L F+    H+I      
Sbjct: 2   ASSKLYSDDVSLAVVVVDTNPLFWA---------------TAALPFADFFAHLIHYVNSL 46

Query: 763 XXXXXXXXXXLITTGVNSCSYIYDSEEGGAESATGKVPAACSKILLRLEEFLTKDRLLGK 584
                     +I  G++SC+YI+DS +  A  A   V A  +K   +++EF+ +D     
Sbjct: 47  LLLNHLNHVVVIAAGLSSCTYIFDSSDASASGAAD-VAATFAKASRKMDEFIAEDARATS 105

Query: 583 DPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVMNAI 404
                                LCYIQR+FRSGTRHPQPRILCLQGSPDGPEQYVAVMN+I
Sbjct: 106 SNGSVADGNAASLLSGALSLALCYIQRVFRSGTRHPQPRILCLQGSPDGPEQYVAVMNSI 165

Query: 403 FTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQSRSF 224
           F+AQRSM+PIDSC++G Q SAFLQQASYITGGVYLKPQ L+GLFQYL++VFATDL SR+F
Sbjct: 166 FSAQRSMVPIDSCIVGTQDSAFLQQASYITGGVYLKPQELNGLFQYLAAVFATDLHSRTF 225

Query: 223 LQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHIDLNA 50
           L+LP+  GVDFRASCFCHKKTIDMGYVCSVCLSIFCK HKKCSTCGS+F+    DLN+
Sbjct: 226 LRLPKTLGVDFRASCFCHKKTIDMGYVCSVCLSIFCKYHKKCSTCGSEFNRVMPDLNS 283


>ref|XP_004952041.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
           X1 [Setaria italica]
          Length = 291

 Score =  318 bits (815), Expect = 2e-84
 Identities = 168/300 (56%), Positives = 195/300 (65%)
 Frame = -2

Query: 949 ASAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXX 770
           +SA SKLYS+D       +D NPFFW                 A L F+    +++    
Sbjct: 2   SSAHSKLYSDDVSLVVIVVDTNPFFWA---------------AAALPFADFFANLVHFVN 46

Query: 769 XXXXXXXXXXXXLITTGVNSCSYIYDSEEGGAESATGKVPAACSKILLRLEEFLTKDRLL 590
                       +I  GV+SCSYI+DS +  A    G V A   K   ++EEF+ +D   
Sbjct: 47  SLLLLNHLNRVVVIAAGVSSCSYIFDSSDASAAGGVG-VTATFDKASRKVEEFIAQDARA 105

Query: 589 GKDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVMN 410
                                  LCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVMN
Sbjct: 106 TAGNGSVVSGNAASLLSGALSLALCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVMN 165

Query: 409 AIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQSR 230
           +IF+AQRSM+PIDSC++G Q SAFLQQASYITGGVYLKPQ L+GLFQYL+ VFATDL SR
Sbjct: 166 SIFSAQRSMVPIDSCIVGTQDSAFLQQASYITGGVYLKPQELNGLFQYLAVVFATDLHSR 225

Query: 229 SFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHIDLNA 50
           +FL+LP+  GVDFRASCFCHKKTIDMGYVCSVCLSIFCK  KKCSTCGS+FS    DLN+
Sbjct: 226 TFLRLPKTLGVDFRASCFCHKKTIDMGYVCSVCLSIFCKNQKKCSTCGSEFSRVMPDLNS 285


>ref|XP_006472763.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
           X2 [Citrus sinensis]
          Length = 293

 Score =  317 bits (812), Expect = 5e-84
 Identities = 165/302 (54%), Positives = 195/302 (64%), Gaps = 1/302 (0%)
 Frame = -2

Query: 949 ASAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXX 770
           ASAPSKLYS+D       LD NPFFW                ++ LSFS+ L HV+    
Sbjct: 2   ASAPSKLYSDDVSLVVVLLDTNPFFWS---------------SSSLSFSQFLTHVLAFFN 46

Query: 769 XXXXXXXXXXXXLITTGVNSCSYIYDSEEGGAESA-TGKVPAACSKILLRLEEFLTKDRL 593
                       +I TG NSC Y+YDS   G +S   G++P+ C+ +L  LEEF+ KD  
Sbjct: 47  AILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ 106

Query: 592 LGKDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVM 413
           LGK   +                  CYIQR+FRSG  HPQPR     GSPDGPEQYVA+M
Sbjct: 107 LGKQEPEGRIACSLLSGSLSMAL--CYIQRVFRSGLLHPQPR-----GSPDGPEQYVAIM 159

Query: 412 NAIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQS 233
           NAIF+AQRSM+PIDSC +G Q+SAFLQQASYITGGV+ KPQ LDGLFQYL ++F TDL S
Sbjct: 160 NAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHS 219

Query: 232 RSFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHIDLN 53
           R+FLQLP+P GVDFRASCFCHK TIDMGY+CSVCLSI+CK  KKCSTCGS F  +    +
Sbjct: 220 RNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSD 279

Query: 52  AP 47
            P
Sbjct: 280 EP 281


>ref|XP_003573866.1| PREDICTED: general transcription factor IIH subunit 3-like
           [Brachypodium distachyon]
          Length = 290

 Score =  316 bits (810), Expect = 8e-84
 Identities = 167/299 (55%), Positives = 196/299 (65%)
 Frame = -2

Query: 946 SAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXXX 767
           SA SKLYS+D       +D NPFFW                 A L F+    H+I     
Sbjct: 3   SAHSKLYSDDVSLVVVIVDTNPFFWAG---------------AALPFADFFGHLIHFVNS 47

Query: 766 XXXXXXXXXXXLITTGVNSCSYIYDSEEGGAESATGKVPAACSKILLRLEEFLTKDRLLG 587
                      +I  GV+SC+Y++DS    A S +  V A  +K   ++EEF+ +D    
Sbjct: 48  LLLLNHLNQVVVIAAGVSSCAYVFDSGNAAA-SGSPDVAATFAKASRKVEEFVKQDARDT 106

Query: 586 KDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVMNA 407
                                 LCYIQR+FRSGTRHPQPRILCLQGSPDGPEQYVAVMN+
Sbjct: 107 AGNGTVAGGGAASLFSGALSLALCYIQRVFRSGTRHPQPRILCLQGSPDGPEQYVAVMNS 166

Query: 406 IFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQSRS 227
           IF+AQRSM+PIDSC++G Q SAFLQQASYITGGVYLKPQ L GLFQYL++VFA+DL SR+
Sbjct: 167 IFSAQRSMVPIDSCIVGTQDSAFLQQASYITGGVYLKPQELSGLFQYLAAVFASDLHSRA 226

Query: 226 FLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHIDLNA 50
           FL+LP+  GVDFRASCFCHKKTIDMGYVCSVCLSIFCK HKKCSTCGS+FS    DLN+
Sbjct: 227 FLRLPKTLGVDFRASCFCHKKTIDMGYVCSVCLSIFCKYHKKCSTCGSEFSRVMPDLNS 285


>dbj|BAK06937.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 292

 Score =  315 bits (807), Expect = 2e-83
 Identities = 168/300 (56%), Positives = 197/300 (65%), Gaps = 1/300 (0%)
 Frame = -2

Query: 946 SAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXXX 767
           SA SKLYS+D       +D NPFFW                 A L F+  L+H+I     
Sbjct: 3   SAHSKLYSDDVSLVVVVVDTNPFFWAG---------------AALPFADFLSHLIHFVNS 47

Query: 766 XXXXXXXXXXXLITTGVNSCSYIYDSEEGGAESATGKVPAACSKILLRLEEFLTKDRLLG 587
                      +I  GV+SC+Y++DS   GA S T  V     K   +LEE + +D    
Sbjct: 48  LLLLSNLNHVVIIAAGVSSCAYVFDSGNAGA-SGTADVAETLGKASRKLEELIKQDARET 106

Query: 586 KDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVMNA 407
                                 LCYIQRIFRSG+RHPQPRILC+QGSPDGPEQYVAVMN+
Sbjct: 107 VGNGTVADGGAASLFSGALSLALCYIQRIFRSGSRHPQPRILCVQGSPDGPEQYVAVMNS 166

Query: 406 IFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQSRS 227
           IF+AQRSM+PID+C++G Q SAFLQQASYITGGVY+KPQ L GLFQYL++VFATDL SR+
Sbjct: 167 IFSAQRSMVPIDTCIVGTQDSAFLQQASYITGGVYMKPQELSGLFQYLAAVFATDLHSRT 226

Query: 226 FLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFS-PSHIDLNA 50
           FL+LP+  GVDFRASCFCHKKTIDMGYVCSVCLSIFCK HKKCSTCGS+FS  S  DLN+
Sbjct: 227 FLRLPKTLGVDFRASCFCHKKTIDMGYVCSVCLSIFCKYHKKCSTCGSEFSRVSMPDLNS 286


>ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arabidopsis lyrata subsp.
           lyrata] gi|297338839|gb|EFH69256.1| hypothetical protein
           ARALYDRAFT_472054 [Arabidopsis lyrata subsp. lyrata]
          Length = 301

 Score =  314 bits (805), Expect = 3e-83
 Identities = 165/300 (55%), Positives = 197/300 (65%), Gaps = 4/300 (1%)
 Frame = -2

Query: 946 SAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXXX 767
           S  SK YS+D       LD NP FW                T  ++FS+ L+HV+     
Sbjct: 3   SVVSKQYSDDVSLLVLLLDTNPLFWS---------------TTSITFSQFLSHVLAFLNA 47

Query: 766 XXXXXXXXXXXLITTGVNSCSYIYDSE----EGGAESATGKVPAACSKILLRLEEFLTKD 599
                      +I TG +SC YIYDS      G  ES    +PA    +L +LE+F+TKD
Sbjct: 48  VLGLNQLNQVVVIATGYSSCDYIYDSSLTSNHGNLESNGTGMPALFGSLLKKLEDFVTKD 107

Query: 598 RLLGKDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVA 419
             L ++ +                  LCYIQR+FRSG  HPQPRILCLQGSPDGPEQYVA
Sbjct: 108 EELSRE-EVSEDRIPSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVA 166

Query: 418 VMNAIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDL 239
           VMN+IF+AQR M+PIDSC +GVQ+SAFLQQASYITGGV+  P+ LDGLFQYL+++FATDL
Sbjct: 167 VMNSIFSAQRLMVPIDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDL 226

Query: 238 QSRSFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHID 59
            SRSF+QLP+P GVDFRASCFCHKKTIDMGY+CSVCLSIFC+ HKKCSTCGS F  S +D
Sbjct: 227 HSRSFVQLPKPIGVDFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLD 286


>ref|NP_564050.1| basal transcription factor complex subunit-related protein
           [Arabidopsis thaliana] gi|21537277|gb|AAM61618.1|
           unknown [Arabidopsis thaliana]
           gi|92856638|gb|ABE77412.1| At1g18340 [Arabidopsis
           thaliana] gi|332191584|gb|AEE29705.1| basal
           transcription factor complex subunit-related protein
           [Arabidopsis thaliana]
          Length = 301

 Score =  314 bits (804), Expect = 4e-83
 Identities = 165/297 (55%), Positives = 195/297 (65%), Gaps = 4/297 (1%)
 Frame = -2

Query: 937 SKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXXXXXX 758
           SK YS+D       LD NP FW                T  ++FS+ L+HV+        
Sbjct: 6   SKQYSDDVSLLVLLLDTNPLFWS---------------TTSITFSQFLSHVLAFLNAVLG 50

Query: 757 XXXXXXXXLITTGVNSCSYIYDSE----EGGAESATGKVPAACSKILLRLEEFLTKDRLL 590
                   +I TG +SC YIYDS      G  ES    +PA    +L +LEEF+TKD  L
Sbjct: 51  LNQLNQVVVIATGYSSCDYIYDSSLTSNHGNFESNGTGMPAIFGSLLKKLEEFVTKDEEL 110

Query: 589 GKDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVMN 410
            K+ +                  LCYIQR+FRSG  HPQPRILCLQGSPDGPEQYVAVMN
Sbjct: 111 SKE-EVSEDRIPSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMN 169

Query: 409 AIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQSR 230
           +IF+AQR M+PIDSC +GVQ+SAFLQQASYITGGV+  P+ LDGLFQYL+++FATDL SR
Sbjct: 170 SIFSAQRLMVPIDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSR 229

Query: 229 SFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHID 59
            F+QLP+P GVDFRASCFCHKKTIDMGY+CSVCLSIFC+ HKKCSTCGS F  S +D
Sbjct: 230 GFVQLPKPIGVDFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLD 286


>ref|XP_006648269.1| PREDICTED: general transcription factor IIH subunit 3-like [Oryza
           brachyantha]
          Length = 292

 Score =  311 bits (798), Expect = 2e-82
 Identities = 164/296 (55%), Positives = 198/296 (66%), Gaps = 2/296 (0%)
 Frame = -2

Query: 931 LYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQ--HHPTAVLSFSKLLNHVIPXXXXXXX 758
           LYS+D       +D NPFFW           +Q  H+  ++L  + L NHV+        
Sbjct: 10  LYSDDISLAVVVVDTNPFFWAGAALPFTDFFAQLIHYVNSLLLLNHL-NHVV-------- 60

Query: 757 XXXXXXXXLITTGVNSCSYIYDSEEGGAESATGKVPAACSKILLRLEEFLTKDRLLGKDP 578
                   +I  G++SC+YI+DS +  A  A   V A  +K   +++EF+ +D       
Sbjct: 61  --------VIAAGLSSCTYIFDSSDASASGAAD-VAATFAKASRKMDEFIGEDAHATTSS 111

Query: 577 DKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVMNAIFT 398
                              LCYIQR+FRSGTRHPQPRILCLQGSPDGPEQYVAVMN+IF+
Sbjct: 112 GAVADSNAASLLSGALSLALCYIQRVFRSGTRHPQPRILCLQGSPDGPEQYVAVMNSIFS 171

Query: 397 AQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQSRSFLQ 218
           AQRSM+PIDSC++G Q SAFLQQASYITGGVYLKPQ L GLFQYL++VFATDL SR+FL+
Sbjct: 172 AQRSMVPIDSCIVGTQDSAFLQQASYITGGVYLKPQELSGLFQYLAAVFATDLHSRTFLR 231

Query: 217 LPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHIDLNA 50
           LP+  GVDFRASCFCHKKTIDMGYVCSVCLSIFCK HKKCSTCGS+F+    DLN+
Sbjct: 232 LPKTLGVDFRASCFCHKKTIDMGYVCSVCLSIFCKYHKKCSTCGSEFNRVMPDLNS 287


>ref|NP_001131186.1| hypothetical protein [Zea mays] gi|194688300|gb|ACF78234.1| unknown
           [Zea mays] gi|194690816|gb|ACF79492.1| unknown [Zea
           mays] gi|224028537|gb|ACN33344.1| unknown [Zea mays]
           gi|413926714|gb|AFW66646.1| hypothetical protein
           ZEAMMB73_940692 [Zea mays]
          Length = 291

 Score =  311 bits (798), Expect = 2e-82
 Identities = 164/299 (54%), Positives = 191/299 (63%)
 Frame = -2

Query: 946 SAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXXX 767
           SA SKLYS+D       +D NPFFW                 A L F+    H+I     
Sbjct: 3   SAHSKLYSDDVSLVVVVVDTNPFFWA---------------AAALPFADFFAHLIHFVNS 47

Query: 766 XXXXXXXXXXXLITTGVNSCSYIYDSEEGGAESATGKVPAACSKILLRLEEFLTKDRLLG 587
                      +I  GV+SC+YI DS +         V     K   + EEF+ +D    
Sbjct: 48  LLLLNHLNRVVVIAAGVSSCAYILDSSDASPSGGVA-VSDTFDKASRKAEEFIAQDARAT 106

Query: 586 KDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVMNA 407
                                 LCYIQRIFRSG+RHPQPRILCLQGSPDGPEQYVAVMN+
Sbjct: 107 AGNGSVASANAASLLSGALSISLCYIQRIFRSGSRHPQPRILCLQGSPDGPEQYVAVMNS 166

Query: 406 IFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQSRS 227
           IF+AQRSM+PIDSC++G Q SAFLQQASYITGGVYLKPQ L+GLFQYL++VFATDL SR+
Sbjct: 167 IFSAQRSMVPIDSCIVGTQDSAFLQQASYITGGVYLKPQELNGLFQYLAAVFATDLHSRA 226

Query: 226 FLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHIDLNA 50
           FL+LP+  GVDFRASCFCHKKTIDMGYVCS+CLSIFCK  KKCSTCGS+FS +  DLN+
Sbjct: 227 FLRLPKTLGVDFRASCFCHKKTIDMGYVCSICLSIFCKNQKKCSTCGSEFSRAMPDLNS 285


>ref|XP_006305456.1| hypothetical protein CARUB_v10009867mg [Capsella rubella]
           gi|482574167|gb|EOA38354.1| hypothetical protein
           CARUB_v10009867mg [Capsella rubella]
          Length = 301

 Score =  310 bits (793), Expect = 7e-82
 Identities = 162/300 (54%), Positives = 195/300 (65%), Gaps = 4/300 (1%)
 Frame = -2

Query: 946 SAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXXX 767
           S  SK Y +D       LD NPFFW                T  ++FS+ L+HV+     
Sbjct: 3   SVASKQYPDDVSLLVLLLDTNPFFWS---------------TTSITFSQFLSHVLAFLNA 47

Query: 766 XXXXXXXXXXXLITTGVNSCSYIYDSE----EGGAESATGKVPAACSKILLRLEEFLTKD 599
                      +I TG +SC YIYDS      G  E     +P   + +L +LE+F+TKD
Sbjct: 48  VLGLNQLNQVVVIATGYSSCEYIYDSSLTSNHGSFERDRTGMPPLFASLLNKLEDFVTKD 107

Query: 598 RLLGKDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVA 419
             L ++ +                  LCYIQR+FRSG  HPQPRILCLQGSPDGPEQYVA
Sbjct: 108 EELSRE-EGNEDRTPSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVA 166

Query: 418 VMNAIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDL 239
           VMN+IF+AQR M+PIDSC +GVQ+SAFLQQASYITGGV+  P+ LDGLFQYL+++FATDL
Sbjct: 167 VMNSIFSAQRLMVPIDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDL 226

Query: 238 QSRSFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHID 59
            SR F+QLP+P GVDFRASCFCHKKTIDMGY+CSVCLSIFC+ HKKCSTCGS F  S +D
Sbjct: 227 HSRGFVQLPKPIGVDFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLD 286


>ref|XP_006347459.1| PREDICTED: general transcription factor IIH subunit 3-like [Solanum
           tuberosum]
          Length = 290

 Score =  308 bits (789), Expect = 2e-81
 Identities = 161/287 (56%), Positives = 188/287 (65%)
 Frame = -2

Query: 937 SKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXXXXXX 758
           SKLY++D       +D NP+FW                    +F K ++HV+        
Sbjct: 6   SKLYADDVSLLMVLVDTNPYFWSSMK------------NTAFTFPKFISHVLAFLNSILL 53

Query: 757 XXXXXXXXLITTGVNSCSYIYDSEEGGAESATGKVPAACSKILLRLEEFLTKDRLLGKDP 578
                   +I TG NSC Y++DS      S +    A C  +L +LE+F+ KD  L ++ 
Sbjct: 54  LNQMNQVVVIATGYNSCDYVFDS------STSSMQRAEC--LLEKLEDFVDKDESLSQED 105

Query: 577 DKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVMNAIFT 398
                              LCYIQR+FRSG  HPQPRILCL GSPDGP QYVAVMN+IF+
Sbjct: 106 S--VDGVGFSLLSGSLSMALCYIQRVFRSGPLHPQPRILCLHGSPDGPGQYVAVMNSIFS 163

Query: 397 AQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQSRSFLQ 218
           AQRSM+PIDSCV+G QHSAFLQQASYITGGVYLKPQ  DGLFQYLS+VFATDL SRSFLQ
Sbjct: 164 AQRSMVPIDSCVIGSQHSAFLQQASYITGGVYLKPQVSDGLFQYLSTVFATDLHSRSFLQ 223

Query: 217 LPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDF 77
           LPRP GVDFRASCFCHK TIDMG++CSVCLSIFCK HKKCSTCGS+F
Sbjct: 224 LPRPVGVDFRASCFCHKNTIDMGFICSVCLSIFCKHHKKCSTCGSNF 270