BLASTX nr result
ID: Zingiber23_contig00017642
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00017642
(248 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004485469.1| PREDICTED: cleavage and polyadenylation spec... 140 1e-31
ref|XP_003559115.1| PREDICTED: cleavage and polyadenylation spec... 137 2e-30
gb|EMS66185.1| Cleavage and polyadenylation specificity factor s... 136 3e-30
ref|XP_002271646.2| PREDICTED: cleavage and polyadenylation spec... 136 3e-30
ref|XP_003633408.1| PREDICTED: cleavage and polyadenylation spec... 136 3e-30
dbj|BAJ99273.1| predicted protein [Hordeum vulgare subsp. vulgare] 136 3e-30
emb|CBI29772.3| unnamed protein product [Vitis vinifera] 136 3e-30
emb|CAN71414.1| hypothetical protein VITISV_029216 [Vitis vinifera] 136 3e-30
ref|XP_004243506.1| PREDICTED: cleavage and polyadenylation spec... 135 4e-30
ref|XP_006471217.1| PREDICTED: cleavage and polyadenylation spec... 135 6e-30
ref|XP_006471216.1| PREDICTED: cleavage and polyadenylation spec... 135 6e-30
ref|XP_006431753.1| hypothetical protein CICLE_v10000468mg [Citr... 135 6e-30
ref|XP_006431752.1| hypothetical protein CICLE_v10000468mg [Citr... 135 6e-30
ref|XP_006357977.1| PREDICTED: cleavage and polyadenylation spec... 134 1e-29
gb|ESW20533.1| hypothetical protein PHAVU_006G217100g [Phaseolus... 134 1e-29
gb|EOX98110.1| Cleavage and polyadenylation specificity factor 7... 134 1e-29
ref|XP_006650916.1| PREDICTED: cleavage and polyadenylation spec... 134 2e-29
ref|XP_003540154.1| PREDICTED: cleavage and polyadenylation spec... 134 2e-29
ref|XP_003531594.1| PREDICTED: cleavage and polyadenylation spec... 134 2e-29
ref|XP_003592965.1| Cleavage and polyadenylation specificity fac... 133 3e-29
>ref|XP_004485469.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Cicer arietinum]
Length = 687
Score = 140 bits (354), Expect = 1e-31
Identities = 71/83 (85%), Positives = 78/83 (93%), Gaps = 1/83 (1%)
Frame = -2
Query: 247 RLADKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANITQRISIPYSGAFSVIKH 68
+LA+KTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTAN+TQRI+IPYSGAFSVI+H
Sbjct: 471 KLAEKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYSGAFSVIQH 530
Query: 67 RLKQIYESVEAPI-EEPDVPTLI 2
RLKQIYESVE + EE VPTL+
Sbjct: 531 RLKQIYESVELSVDEESGVPTLL 553
>ref|XP_003559115.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Brachypodium distachyon]
Length = 768
Score = 137 bits (344), Expect = 2e-30
Identities = 67/82 (81%), Positives = 77/82 (93%)
Frame = -2
Query: 247 RLADKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANITQRISIPYSGAFSVIKH 68
RLA+K PEVGE+VSGLLVKKGFTYQIMAP+DL V++QLSTANITQRI++PYSG+F VIK+
Sbjct: 553 RLAEKVPEVGESVSGLLVKKGFTYQIMAPEDLRVYTQLSTANITQRIAVPYSGSFEVIKY 612
Query: 67 RLKQIYESVEAPIEEPDVPTLI 2
RLKQIYESVE+ EEPDVPTLI
Sbjct: 613 RLKQIYESVESCPEEPDVPTLI 634
>gb|EMS66185.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Triticum urartu]
Length = 875
Score = 136 bits (343), Expect = 3e-30
Identities = 67/82 (81%), Positives = 75/82 (91%)
Frame = -2
Query: 247 RLADKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANITQRISIPYSGAFSVIKH 68
RLA K PEVGE+VSGLLVKKGFTYQIMAP+DL V++QLST NITQRIS+PYSG+F VIK+
Sbjct: 490 RLAAKVPEVGESVSGLLVKKGFTYQIMAPEDLRVYTQLSTTNITQRISVPYSGSFEVIKY 549
Query: 67 RLKQIYESVEAPIEEPDVPTLI 2
RLKQIYESVE+ EEPDVPTLI
Sbjct: 550 RLKQIYESVESSTEEPDVPTLI 571
Score = 77.4 bits (189), Expect = 2e-12
Identities = 37/45 (82%), Positives = 41/45 (91%)
Frame = -2
Query: 136 LSTANITQRISIPYSGAFSVIKHRLKQIYESVEAPIEEPDVPTLI 2
LST NITQRIS+PYSG+F VIK+RLKQIYESVE+ EEPDVPTLI
Sbjct: 697 LSTTNITQRISVPYSGSFEVIKYRLKQIYESVESSTEEPDVPTLI 741
>ref|XP_002271646.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Vitis vinifera]
Length = 693
Score = 136 bits (343), Expect = 3e-30
Identities = 69/80 (86%), Positives = 75/80 (93%), Gaps = 1/80 (1%)
Frame = -2
Query: 247 RLADKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANITQRISIPYSGAFSVIKH 68
RLA+KTPEVGETVSGLLVKKGFTYQIMAPDDLHVF QLSTAN+TQRI+IPY+GAF VIKH
Sbjct: 477 RLAEKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFWQLSTANVTQRITIPYTGAFGVIKH 536
Query: 67 RLKQIYESVEA-PIEEPDVP 11
RLKQIYESVE+ P EE +VP
Sbjct: 537 RLKQIYESVESLPDEESEVP 556
>ref|XP_003633408.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Vitis vinifera]
Length = 694
Score = 136 bits (343), Expect = 3e-30
Identities = 69/80 (86%), Positives = 75/80 (93%), Gaps = 1/80 (1%)
Frame = -2
Query: 247 RLADKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANITQRISIPYSGAFSVIKH 68
RLA+KTP VGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTAN+TQRI+IPY+GAF VIKH
Sbjct: 478 RLAEKTPGVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYTGAFGVIKH 537
Query: 67 RLKQIYESVEA-PIEEPDVP 11
RLKQIYESVE+ P EE +VP
Sbjct: 538 RLKQIYESVESLPDEESEVP 557
>dbj|BAJ99273.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 693
Score = 136 bits (343), Expect = 3e-30
Identities = 66/82 (80%), Positives = 76/82 (92%)
Frame = -2
Query: 247 RLADKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANITQRISIPYSGAFSVIKH 68
RLA+K PEVGE+VSGLLVKKGFTYQIMAP+DL V++QLST NITQRIS+PYSG+F VIK+
Sbjct: 478 RLAEKVPEVGESVSGLLVKKGFTYQIMAPEDLRVYTQLSTTNITQRISVPYSGSFEVIKY 537
Query: 67 RLKQIYESVEAPIEEPDVPTLI 2
RLK+IYESVE+ EEPDVPTLI
Sbjct: 538 RLKRIYESVESSTEEPDVPTLI 559
>emb|CBI29772.3| unnamed protein product [Vitis vinifera]
Length = 680
Score = 136 bits (343), Expect = 3e-30
Identities = 69/80 (86%), Positives = 75/80 (93%), Gaps = 1/80 (1%)
Frame = -2
Query: 247 RLADKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANITQRISIPYSGAFSVIKH 68
RLA+KTP VGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTAN+TQRI+IPY+GAF VIKH
Sbjct: 428 RLAEKTPGVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYTGAFGVIKH 487
Query: 67 RLKQIYESVEA-PIEEPDVP 11
RLKQIYESVE+ P EE +VP
Sbjct: 488 RLKQIYESVESLPDEESEVP 507
>emb|CAN71414.1| hypothetical protein VITISV_029216 [Vitis vinifera]
Length = 687
Score = 136 bits (343), Expect = 3e-30
Identities = 69/80 (86%), Positives = 75/80 (93%), Gaps = 1/80 (1%)
Frame = -2
Query: 247 RLADKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANITQRISIPYSGAFSVIKH 68
RLA+KTP VGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTAN+TQRI+IPY+GAF VIKH
Sbjct: 471 RLAEKTPGVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYTGAFGVIKH 530
Query: 67 RLKQIYESVEA-PIEEPDVP 11
RLKQIYESVE+ P EE +VP
Sbjct: 531 RLKQIYESVESLPDEESEVP 550
>ref|XP_004243506.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Solanum lycopersicum]
Length = 695
Score = 135 bits (341), Expect = 4e-30
Identities = 69/82 (84%), Positives = 76/82 (92%), Gaps = 1/82 (1%)
Frame = -2
Query: 247 RLADKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANITQRISIPYSGAFSVIKH 68
+LA+KTPEVGE VSGLLVKKGFTYQIMAPDDLHVFSQLSTAN+TQRI+IPYSGAF+VI+H
Sbjct: 479 KLAEKTPEVGEIVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYSGAFAVIQH 538
Query: 67 RLKQIYESVEAPI-EEPDVPTL 5
RLKQIYESVE+ EE VPTL
Sbjct: 539 RLKQIYESVESSTDEESGVPTL 560
>ref|XP_006471217.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like isoform X2 [Citrus sinensis]
Length = 588
Score = 135 bits (340), Expect = 6e-30
Identities = 68/82 (82%), Positives = 76/82 (92%), Gaps = 1/82 (1%)
Frame = -2
Query: 247 RLADKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANITQRISIPYSGAFSVIKH 68
RLA+KTPEVGETVSG+LVKKGFTYQIMAPDDLH+FSQLSTANITQRI++PYSGAF VIK+
Sbjct: 372 RLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRITVPYSGAFGVIKY 431
Query: 67 RLKQIYESVEAPI-EEPDVPTL 5
RL+QIYESVE+ EE VPTL
Sbjct: 432 RLEQIYESVESSTDEESGVPTL 453
>ref|XP_006471216.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like isoform X1 [Citrus sinensis]
Length = 694
Score = 135 bits (340), Expect = 6e-30
Identities = 68/82 (82%), Positives = 76/82 (92%), Gaps = 1/82 (1%)
Frame = -2
Query: 247 RLADKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANITQRISIPYSGAFSVIKH 68
RLA+KTPEVGETVSG+LVKKGFTYQIMAPDDLH+FSQLSTANITQRI++PYSGAF VIK+
Sbjct: 478 RLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRITVPYSGAFGVIKY 537
Query: 67 RLKQIYESVEAPI-EEPDVPTL 5
RL+QIYESVE+ EE VPTL
Sbjct: 538 RLEQIYESVESSTDEESGVPTL 559
>ref|XP_006431753.1| hypothetical protein CICLE_v10000468mg [Citrus clementina]
gi|557533875|gb|ESR44993.1| hypothetical protein
CICLE_v10000468mg [Citrus clementina]
Length = 588
Score = 135 bits (340), Expect = 6e-30
Identities = 68/82 (82%), Positives = 76/82 (92%), Gaps = 1/82 (1%)
Frame = -2
Query: 247 RLADKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANITQRISIPYSGAFSVIKH 68
RLA+KTPEVGETVSG+LVKKGFTYQIMAPDDLH+FSQLSTANITQRI++PYSGAF VIK+
Sbjct: 372 RLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRITVPYSGAFGVIKY 431
Query: 67 RLKQIYESVEAPI-EEPDVPTL 5
RL+QIYESVE+ EE VPTL
Sbjct: 432 RLEQIYESVESSTDEESGVPTL 453
>ref|XP_006431752.1| hypothetical protein CICLE_v10000468mg [Citrus clementina]
gi|557533874|gb|ESR44992.1| hypothetical protein
CICLE_v10000468mg [Citrus clementina]
Length = 694
Score = 135 bits (340), Expect = 6e-30
Identities = 68/82 (82%), Positives = 76/82 (92%), Gaps = 1/82 (1%)
Frame = -2
Query: 247 RLADKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANITQRISIPYSGAFSVIKH 68
RLA+KTPEVGETVSG+LVKKGFTYQIMAPDDLH+FSQLSTANITQRI++PYSGAF VIK+
Sbjct: 478 RLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRITVPYSGAFGVIKY 537
Query: 67 RLKQIYESVEAPI-EEPDVPTL 5
RL+QIYESVE+ EE VPTL
Sbjct: 538 RLEQIYESVESSTDEESGVPTL 559
>ref|XP_006357977.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Solanum tuberosum]
Length = 695
Score = 134 bits (337), Expect = 1e-29
Identities = 68/82 (82%), Positives = 75/82 (91%), Gaps = 1/82 (1%)
Frame = -2
Query: 247 RLADKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANITQRISIPYSGAFSVIKH 68
+LA+KTPE GE VSGLLVKKGFTYQIMAPDDLHVFSQLSTAN+TQRI+IPYSGAF+VI+H
Sbjct: 479 KLAEKTPEAGEIVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYSGAFAVIQH 538
Query: 67 RLKQIYESVEAPI-EEPDVPTL 5
RLKQIYESVE+ EE VPTL
Sbjct: 539 RLKQIYESVESSTDEESGVPTL 560
>gb|ESW20533.1| hypothetical protein PHAVU_006G217100g [Phaseolus vulgaris]
Length = 690
Score = 134 bits (337), Expect = 1e-29
Identities = 69/82 (84%), Positives = 76/82 (92%), Gaps = 1/82 (1%)
Frame = -2
Query: 247 RLADKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANITQRISIPYSGAFSVIKH 68
+LA+KTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTA+ITQRI+IPYS AF+VI+H
Sbjct: 474 KLAEKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTASITQRITIPYSCAFNVIRH 533
Query: 67 RLKQIYESVEAPI-EEPDVPTL 5
RLKQIYESVE + EE VPTL
Sbjct: 534 RLKQIYESVEQSVDEESGVPTL 555
>gb|EOX98110.1| Cleavage and polyadenylation specificity factor 73-I [Theobroma
cacao]
Length = 694
Score = 134 bits (337), Expect = 1e-29
Identities = 67/82 (81%), Positives = 76/82 (92%), Gaps = 1/82 (1%)
Frame = -2
Query: 247 RLADKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANITQRISIPYSGAFSVIKH 68
RLA+KTPEVGETVSG+LVKKGFTYQIMAPDD+H+FSQLSTANITQRI+IP++GAF VIKH
Sbjct: 478 RLAEKTPEVGETVSGVLVKKGFTYQIMAPDDIHIFSQLSTANITQRITIPFAGAFGVIKH 537
Query: 67 RLKQIYESVEAPI-EEPDVPTL 5
RL+QIYESVE+ EE VPTL
Sbjct: 538 RLEQIYESVESSTDEESGVPTL 559
>ref|XP_006650916.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Oryza brachyantha]
Length = 632
Score = 134 bits (336), Expect = 2e-29
Identities = 65/82 (79%), Positives = 76/82 (92%)
Frame = -2
Query: 247 RLADKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANITQRISIPYSGAFSVIKH 68
RLA+K PEVGE+VSGLLVKKGFTYQIMAP+DL V++QLSTANITQRI++PYSG+F VIK+
Sbjct: 417 RLAEKVPEVGESVSGLLVKKGFTYQIMAPEDLRVYTQLSTANITQRIAVPYSGSFEVIKY 476
Query: 67 RLKQIYESVEAPIEEPDVPTLI 2
RLKQIYESVE+ EE DVP+LI
Sbjct: 477 RLKQIYESVESSTEESDVPSLI 498
>ref|XP_003540154.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I isoform X1 [Glycine max]
gi|571493830|ref|XP_006592669.1| PREDICTED: cleavage and
polyadenylation specificity factor subunit 3-I isoform
X2 [Glycine max]
Length = 689
Score = 134 bits (336), Expect = 2e-29
Identities = 69/82 (84%), Positives = 75/82 (91%), Gaps = 1/82 (1%)
Frame = -2
Query: 247 RLADKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANITQRISIPYSGAFSVIKH 68
+LA+KTPEVGETVSGLLVKKGFTYQIMA DDLHVFSQLSTANITQRI+IPYSGAF+VI+H
Sbjct: 473 KLAEKTPEVGETVSGLLVKKGFTYQIMAADDLHVFSQLSTANITQRITIPYSGAFNVIQH 532
Query: 67 RLKQIYESVEAPI-EEPDVPTL 5
RLKQIYESV + EE VPTL
Sbjct: 533 RLKQIYESVAQSVDEESGVPTL 554
>ref|XP_003531594.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Glycine max]
Length = 688
Score = 134 bits (336), Expect = 2e-29
Identities = 68/82 (82%), Positives = 74/82 (90%), Gaps = 1/82 (1%)
Frame = -2
Query: 247 RLADKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANITQRISIPYSGAFSVIKH 68
RLA+KTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLST NITQRI++PYSGAFS I+H
Sbjct: 472 RLAEKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTTNITQRITVPYSGAFSFIQH 531
Query: 67 RLKQIYESVEAPI-EEPDVPTL 5
RLK+IYESVE + EE VP L
Sbjct: 532 RLKRIYESVEQSVDEESGVPEL 553
>ref|XP_003592965.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula] gi|357445453|ref|XP_003593004.1|
Cleavage and polyadenylation specificity factor subunit
3-I [Medicago truncatula] gi|355482013|gb|AES63216.1|
Cleavage and polyadenylation specificity factor subunit
3-I [Medicago truncatula] gi|355482052|gb|AES63255.1|
Cleavage and polyadenylation specificity factor subunit
3-I [Medicago truncatula]
Length = 690
Score = 133 bits (334), Expect = 3e-29
Identities = 68/83 (81%), Positives = 75/83 (90%), Gaps = 1/83 (1%)
Frame = -2
Query: 247 RLADKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANITQRISIPYSGAFSVIKH 68
+LA+KTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTAN+TQRI+IPYSGAF VI+
Sbjct: 474 KLAEKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYSGAFCVIQS 533
Query: 67 RLKQIYESVEAPI-EEPDVPTLI 2
RLKQIYESVE + EE VP L+
Sbjct: 534 RLKQIYESVEPSVDEESGVPMLL 556