BLASTX nr result
ID: Zingiber23_contig00017461
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00017461
(744 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006828170.1| hypothetical protein AMTR_s00023p00113610 [A... 191 2e-46
ref|XP_002271864.1| PREDICTED: U2 small nuclear ribonucleoprotei... 184 2e-44
gb|ABK22144.1| unknown [Picea sitchensis] 184 3e-44
ref|XP_006431966.1| hypothetical protein CICLE_v10002361mg [Citr... 183 5e-44
ref|XP_006431965.1| hypothetical protein CICLE_v10002361mg [Citr... 183 5e-44
ref|NP_001275192.1| spliceosomal protein [Solanum tuberosum] gi|... 183 5e-44
ref|XP_006350871.1| PREDICTED: U2 small nuclear ribonucleoprotei... 182 8e-44
ref|XP_006468132.1| PREDICTED: U2 small nuclear ribonucleoprotei... 181 3e-43
ref|XP_004242495.1| PREDICTED: U2 small nuclear ribonucleoprotei... 179 1e-42
ref|XP_004137370.1| PREDICTED: U2 small nuclear ribonucleoprotei... 178 1e-42
ref|XP_002881095.1| hypothetical protein ARALYDRAFT_320780 [Arab... 176 7e-42
gb|AFK38999.1| unknown [Medicago truncatula] 174 3e-41
ref|NP_001241278.1| uncharacterized protein LOC100805822 [Glycin... 173 6e-41
ref|XP_006376549.1| small nuclear ribonucleoprotein U2B [Populus... 172 8e-41
ref|XP_006376548.1| hypothetical protein POPTR_0013s14980g [Popu... 172 8e-41
ref|NP_180585.1| U2 small nuclear ribonucleoprotein B'' [Arabid... 171 2e-40
gb|AAM64950.1| putative small nuclear ribonucleoprotein U2B [Ara... 171 2e-40
ref|XP_003615951.1| U1 small nuclear ribonucleoprotein A [Medica... 171 3e-40
ref|XP_002517742.1| small nuclear ribonucleoprotein U)1a,U)2b, p... 171 3e-40
ref|XP_002326095.2| hypothetical protein POPTR_0019s14440g [Popu... 170 5e-40
>ref|XP_006828170.1| hypothetical protein AMTR_s00023p00113610 [Amborella trichopoda]
gi|548832817|gb|ERM95586.1| hypothetical protein
AMTR_s00023p00113610 [Amborella trichopoda]
Length = 234
Score = 191 bits (485), Expect = 2e-46
Identities = 96/157 (61%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Frame = +3
Query: 3 YDKPMRIQYAKSKSDCIAKEDGTFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGGL 182
YDKPMRIQYAK+KSDCIAK DGT+VP N G
Sbjct: 78 YDKPMRIQYAKTKSDCIAKADGTYVPREKKKKQEEKAEKRRKAENEAEQTATNVVQNNGT 137
Query: 183 SS-SQVPRHAKPGSQEPAAAPNNILFIENLPHETTKMVLEILFQQYPGFSEVRMIEAKPG 359
++ S R KPG+QE AA+PN+ILFI+NLPHETT M+L++LFQQYPGF EVRM+EAKPG
Sbjct: 138 NNASHTSRPGKPGAQEGAASPNSILFIQNLPHETTSMMLQMLFQQYPGFKEVRMVEAKPG 197
Query: 360 IAFVEFSDDVQASIAMQALQGFKITPQNPMAITYAKR 470
I+FVE++D++QASIAMQALQGFKITPQNPM ITYAK+
Sbjct: 198 ISFVEYADEIQASIAMQALQGFKITPQNPMGITYAKK 234
>ref|XP_002271864.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Vitis vinifera]
gi|297745807|emb|CBI15863.3| unnamed protein product
[Vitis vinifera]
Length = 234
Score = 184 bits (468), Expect = 2e-44
Identities = 96/159 (60%), Positives = 111/159 (69%), Gaps = 3/159 (1%)
Frame = +3
Query: 3 YDKPMRIQYAKSKSDCIAKEDGTFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---TN 173
YDKPMR+QYAK+KSDC+AK DGTFVP TN
Sbjct: 78 YDKPMRVQYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRAEEAQQSGNANGRNAETN 137
Query: 174 GGLSSSQVPRHAKPGSQEPAAAPNNILFIENLPHETTKMVLEILFQQYPGFSEVRMIEAK 353
GG + R G++EP AAPNNILFI+NLPH+TT M+L++LFQQYPGF EVRMIEAK
Sbjct: 138 GGPTPPF--RQGNQGAREPEAAPNNILFIQNLPHQTTSMMLQVLFQQYPGFREVRMIEAK 195
Query: 354 PGIAFVEFSDDVQASIAMQALQGFKITPQNPMAITYAKR 470
PGIAFVEF DDVQ+S+AM+ALQGFKITPQNPMAI YAK+
Sbjct: 196 PGIAFVEFEDDVQSSMAMEALQGFKITPQNPMAIAYAKK 234
>gb|ABK22144.1| unknown [Picea sitchensis]
Length = 235
Score = 184 bits (466), Expect = 3e-44
Identities = 95/158 (60%), Positives = 110/158 (69%), Gaps = 2/158 (1%)
Frame = +3
Query: 3 YDKPMRIQYAKSKSDCIAKEDGTFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGGL 182
YDKPMRIQY KSKSD IAK DGT+VP T+ G
Sbjct: 78 YDKPMRIQYGKSKSDAIAKVDGTYVPREKRKKQEEKAEKRRKEQHETHQAGNGPATSYGA 137
Query: 183 SSSQVPR--HAKPGSQEPAAAPNNILFIENLPHETTKMVLEILFQQYPGFSEVRMIEAKP 356
+++ + KP SQEP A PNNILFI+NLPHETT M+L++LFQQYPGF EVRMIEAKP
Sbjct: 138 AAASQSQFQQGKPSSQEPPAPPNNILFIQNLPHETTTMMLQMLFQQYPGFKEVRMIEAKP 197
Query: 357 GIAFVEFSDDVQASIAMQALQGFKITPQNPMAITYAKR 470
GIAFVE+ D++QAS+AMQALQGFKITPQNPM ITYAK+
Sbjct: 198 GIAFVEYGDEMQASVAMQALQGFKITPQNPMLITYAKK 235
>ref|XP_006431966.1| hypothetical protein CICLE_v10002361mg [Citrus clementina]
gi|557534088|gb|ESR45206.1| hypothetical protein
CICLE_v10002361mg [Citrus clementina]
Length = 220
Score = 183 bits (465), Expect = 5e-44
Identities = 97/156 (62%), Positives = 109/156 (69%)
Frame = +3
Query: 3 YDKPMRIQYAKSKSDCIAKEDGTFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGGL 182
YDKPMRIQYAKSKSDCIAKEDG+FVP G
Sbjct: 67 YDKPMRIQYAKSKSDCIAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANG--TGAQ 124
Query: 183 SSSQVPRHAKPGSQEPAAAPNNILFIENLPHETTKMVLEILFQQYPGFSEVRMIEAKPGI 362
S+S + + + AAAPNNILFI+NLPHETT +LE+LFQQYPGF EVRMIEAKPGI
Sbjct: 125 SNSGTAASFRNANTQEAAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGI 184
Query: 363 AFVEFSDDVQASIAMQALQGFKITPQNPMAITYAKR 470
AFVEF DDVQ+S+AMQALQGFKITPQNPMAIT+AK+
Sbjct: 185 AFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 220
>ref|XP_006431965.1| hypothetical protein CICLE_v10002361mg [Citrus clementina]
gi|557534087|gb|ESR45205.1| hypothetical protein
CICLE_v10002361mg [Citrus clementina]
Length = 231
Score = 183 bits (465), Expect = 5e-44
Identities = 97/156 (62%), Positives = 109/156 (69%)
Frame = +3
Query: 3 YDKPMRIQYAKSKSDCIAKEDGTFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGGL 182
YDKPMRIQYAKSKSDCIAKEDG+FVP G
Sbjct: 78 YDKPMRIQYAKSKSDCIAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANG--TGAQ 135
Query: 183 SSSQVPRHAKPGSQEPAAAPNNILFIENLPHETTKMVLEILFQQYPGFSEVRMIEAKPGI 362
S+S + + + AAAPNNILFI+NLPHETT +LE+LFQQYPGF EVRMIEAKPGI
Sbjct: 136 SNSGTAASFRNANTQEAAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGI 195
Query: 363 AFVEFSDDVQASIAMQALQGFKITPQNPMAITYAKR 470
AFVEF DDVQ+S+AMQALQGFKITPQNPMAIT+AK+
Sbjct: 196 AFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
>ref|NP_001275192.1| spliceosomal protein [Solanum tuberosum] gi|169589|gb|AAA33847.1|
spliceosomal protein [Solanum tuberosum]
Length = 231
Score = 183 bits (465), Expect = 5e-44
Identities = 96/156 (61%), Positives = 111/156 (71%)
Frame = +3
Query: 3 YDKPMRIQYAKSKSDCIAKEDGTFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGGL 182
YDKPMRIQYAKSKSDCIAK +GT+ +NGG
Sbjct: 79 YDKPMRIQYAKSKSDCIAKAEGTYDKKKKQDEKVEKRKRTEETPQTGAANGPRTDSNGGP 138
Query: 183 SSSQVPRHAKPGSQEPAAAPNNILFIENLPHETTKMVLEILFQQYPGFSEVRMIEAKPGI 362
+++ R KP +Q+ A PNNILFI+NLPHETT M+LE+LF+QYPGF EVRMIEAKPGI
Sbjct: 139 AAAS--RQGKPSAQD-VAEPNNILFIQNLPHETTSMMLEVLFKQYPGFREVRMIEAKPGI 195
Query: 363 AFVEFSDDVQASIAMQALQGFKITPQNPMAITYAKR 470
AFVEF DDVQ+S+AMQALQGFKITPQNPMAITYAK+
Sbjct: 196 AFVEFDDDVQSSVAMQALQGFKITPQNPMAITYAKK 231
>ref|XP_006350871.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Solanum
tuberosum]
Length = 232
Score = 182 bits (463), Expect = 8e-44
Identities = 96/156 (61%), Positives = 109/156 (69%)
Frame = +3
Query: 3 YDKPMRIQYAKSKSDCIAKEDGTFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGGL 182
YDKPMRIQYAKSKSDCIAK +GT+ +NGG
Sbjct: 79 YDKPMRIQYAKSKSDCIAKAEGTYDKKKKQDEKVEKRKRTEETPQTGAANGPRADSNGG- 137
Query: 183 SSSQVPRHAKPGSQEPAAAPNNILFIENLPHETTKMVLEILFQQYPGFSEVRMIEAKPGI 362
+ R KP +Q+ A PNNILFI+NLPHETT M+LE+LF+QYPGF EVRMIEAKPGI
Sbjct: 138 GPAAASRQGKPSAQD-IAEPNNILFIQNLPHETTSMMLEVLFKQYPGFREVRMIEAKPGI 196
Query: 363 AFVEFSDDVQASIAMQALQGFKITPQNPMAITYAKR 470
AFVEF DDVQ+S+AMQALQGFKITPQNPMAITYAK+
Sbjct: 197 AFVEFDDDVQSSVAMQALQGFKITPQNPMAITYAKK 232
>ref|XP_006468132.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Citrus
sinensis]
Length = 231
Score = 181 bits (458), Expect = 3e-43
Identities = 96/159 (60%), Positives = 111/159 (69%), Gaps = 3/159 (1%)
Frame = +3
Query: 3 YDKPMRIQYAKSKSDCIAKEDGTFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---TN 173
YDKPMRIQYAKSKSDC+AKEDG+FVP +N
Sbjct: 78 YDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSN 137
Query: 174 GGLSSSQVPRHAKPGSQEPAAAPNNILFIENLPHETTKMVLEILFQQYPGFSEVRMIEAK 353
GG ++S + + + AAPNNILFI+NLPHETT +LE+LFQQYPGF EVRMIEAK
Sbjct: 138 GGTAAS-----FRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK 192
Query: 354 PGIAFVEFSDDVQASIAMQALQGFKITPQNPMAITYAKR 470
PGIAFVEF DDVQ+S+AMQALQGFKITPQNPMAIT+AK+
Sbjct: 193 PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
>ref|XP_004242495.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Solanum
lycopersicum]
Length = 233
Score = 179 bits (453), Expect = 1e-42
Identities = 93/156 (59%), Positives = 107/156 (68%)
Frame = +3
Query: 3 YDKPMRIQYAKSKSDCIAKEDGTFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGGL 182
YDKPMRIQYAKSKSDCIAK +GT+ + G
Sbjct: 79 YDKPMRIQYAKSKSDCIAKAEGTYDKKKKQDEKVEKRKRTEETPPQTGAANGSRTDSNGG 138
Query: 183 SSSQVPRHAKPGSQEPAAAPNNILFIENLPHETTKMVLEILFQQYPGFSEVRMIEAKPGI 362
+ R KP +Q+ A PNNILFI+NLP+ETT M+LE+LF+QYPGF EVRMIEAKPGI
Sbjct: 139 GPAAASRQGKPSAQD-VAEPNNILFIQNLPYETTSMMLEVLFKQYPGFREVRMIEAKPGI 197
Query: 363 AFVEFSDDVQASIAMQALQGFKITPQNPMAITYAKR 470
AFVEF DDVQ+S+AMQALQGFKITPQNPMAITYAK+
Sbjct: 198 AFVEFDDDVQSSVAMQALQGFKITPQNPMAITYAKK 233
>ref|XP_004137370.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis
sativus] gi|449520549|ref|XP_004167296.1| PREDICTED: U2
small nuclear ribonucleoprotein B'' 2-like [Cucumis
sativus]
Length = 231
Score = 178 bits (452), Expect = 1e-42
Identities = 93/156 (59%), Positives = 108/156 (69%)
Frame = +3
Query: 3 YDKPMRIQYAKSKSDCIAKEDGTFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGGL 182
Y+KPMRIQYAK+KSDCIAK DG+FVP T
Sbjct: 78 YEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRAEETHQSAMPNGTTTENG 137
Query: 183 SSSQVPRHAKPGSQEPAAAPNNILFIENLPHETTKMVLEILFQQYPGFSEVRMIEAKPGI 362
S+ RHA P + E A PNNILFIENLPHET+ M+L++LFQQYPGF EVRMIEAKPGI
Sbjct: 138 GSNATFRHANPSATE--ATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGI 195
Query: 363 AFVEFSDDVQASIAMQALQGFKITPQNPMAITYAKR 470
AFVEF DDVQ+S+AMQALQGFKI PQ+PMAI++AK+
Sbjct: 196 AFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231
>ref|XP_002881095.1| hypothetical protein ARALYDRAFT_320780 [Arabidopsis lyrata subsp.
lyrata] gi|297326934|gb|EFH57354.1| hypothetical protein
ARALYDRAFT_320780 [Arabidopsis lyrata subsp. lyrata]
Length = 232
Score = 176 bits (446), Expect = 7e-42
Identities = 89/156 (57%), Positives = 109/156 (69%)
Frame = +3
Query: 3 YDKPMRIQYAKSKSDCIAKEDGTFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGGL 182
YDKPMR+QYAK+KSDC+AK +GTFVP NG
Sbjct: 78 YDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREESQRPNTANGPS-ANGPS 136
Query: 183 SSSQVPRHAKPGSQEPAAAPNNILFIENLPHETTKMVLEILFQQYPGFSEVRMIEAKPGI 362
+++ VP + P S + A PNNILFI+NLPHETT M+L++LF+QYPGF E+RMI+AKPGI
Sbjct: 137 ANNGVPAPSFPPSGQEAMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGI 196
Query: 363 AFVEFSDDVQASIAMQALQGFKITPQNPMAITYAKR 470
AFVE+ DDVQASIAMQ LQGFKITPQNPM I++AK+
Sbjct: 197 AFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232
>gb|AFK38999.1| unknown [Medicago truncatula]
Length = 234
Score = 174 bits (441), Expect = 3e-41
Identities = 90/157 (57%), Positives = 108/157 (68%), Gaps = 1/157 (0%)
Frame = +3
Query: 3 YDKPMRIQYAKSKSDCIAKEDGTFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGGL 182
Y+KPMRIQYAK+KSDCIAKE+G+FVP T+G
Sbjct: 78 YEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESKQSAVPNGGTHGAS 137
Query: 183 SSSQVPRHAKPGS-QEPAAAPNNILFIENLPHETTKMVLEILFQQYPGFSEVRMIEAKPG 359
+ +PGS + AAAPNNILFIENLP+ETT +LE+LF+QYPGF EVR+IEAKPG
Sbjct: 138 NGGSTQASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPG 197
Query: 360 IAFVEFSDDVQASIAMQALQGFKITPQNPMAITYAKR 470
IAFV+F DD Q+S+AMQALQGFKITPQNPM I +AK+
Sbjct: 198 IAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 234
>ref|NP_001241278.1| uncharacterized protein LOC100805822 [Glycine max]
gi|255647802|gb|ACU24361.1| unknown [Glycine max]
Length = 232
Score = 173 bits (438), Expect = 6e-41
Identities = 94/159 (59%), Positives = 111/159 (69%), Gaps = 3/159 (1%)
Frame = +3
Query: 3 YDKPMRIQYAKSKSDCIAKEDGTFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---TN 173
YDKPMRIQYAK+KSDCIAKE+GT+VP +N
Sbjct: 78 YDKPMRIQYAKTKSDCIAKEEGTYVPREKKKKQEEKAERKRRAEEAQQSGVANGTHSASN 137
Query: 174 GGLSSSQVPRHAKPGSQEPAAAPNNILFIENLPHETTKMVLEILFQQYPGFSEVRMIEAK 353
GG ++S PG+QE AAPNNILFIENLPHETT +LE+LF+QYPGF EVR+IEAK
Sbjct: 138 GGPTASF---RQGPGAQE-TAAPNNILFIENLPHETTGRMLEMLFEQYPGFKEVRLIEAK 193
Query: 354 PGIAFVEFSDDVQASIAMQALQGFKITPQNPMAITYAKR 470
PGIAFV+F D+VQ+S+AMQAL GFKITPQNPM IT+AK+
Sbjct: 194 PGIAFVDFEDEVQSSMAMQALHGFKITPQNPMIITFAKK 232
>ref|XP_006376549.1| small nuclear ribonucleoprotein U2B [Populus trichocarpa]
gi|550325877|gb|ERP54346.1| small nuclear
ribonucleoprotein U2B [Populus trichocarpa]
Length = 233
Score = 172 bits (437), Expect = 8e-41
Identities = 93/160 (58%), Positives = 108/160 (67%), Gaps = 4/160 (2%)
Frame = +3
Query: 3 YDKPMRIQYAKSKSDCIAKEDGTFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----T 170
YDKPMRIQYAK+ SDCI + +G + P +
Sbjct: 78 YDKPMRIQYAKTMSDCITEAEGVYDPNAKKKKKNEEKAERKRRAEESQQSAPANGKPAES 137
Query: 171 NGGLSSSQVPRHAKPGSQEPAAAPNNILFIENLPHETTKMVLEILFQQYPGFSEVRMIEA 350
NGG +S RH G+QE A PNNILFI+NLPHETT M+L++LFQQYPGF EVRMIEA
Sbjct: 138 NGGPTSF---RHGNQGAQE-TAPPNNILFIQNLPHETTSMMLQVLFQQYPGFREVRMIEA 193
Query: 351 KPGIAFVEFSDDVQASIAMQALQGFKITPQNPMAITYAKR 470
KPGIAFVEF DDVQ+S+AMQALQGFKITPQNPMA+TYAK+
Sbjct: 194 KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAVTYAKK 233
>ref|XP_006376548.1| hypothetical protein POPTR_0013s14980g [Populus trichocarpa]
gi|550325876|gb|ERP54345.1| hypothetical protein
POPTR_0013s14980g [Populus trichocarpa]
Length = 226
Score = 172 bits (437), Expect = 8e-41
Identities = 93/160 (58%), Positives = 108/160 (67%), Gaps = 4/160 (2%)
Frame = +3
Query: 3 YDKPMRIQYAKSKSDCIAKEDGTFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----T 170
YDKPMRIQYAK+ SDCI + +G + P +
Sbjct: 71 YDKPMRIQYAKTMSDCITEAEGVYDPNAKKKKKNEEKAERKRRAEESQQSAPANGKPAES 130
Query: 171 NGGLSSSQVPRHAKPGSQEPAAAPNNILFIENLPHETTKMVLEILFQQYPGFSEVRMIEA 350
NGG +S RH G+QE A PNNILFI+NLPHETT M+L++LFQQYPGF EVRMIEA
Sbjct: 131 NGGPTSF---RHGNQGAQE-TAPPNNILFIQNLPHETTSMMLQVLFQQYPGFREVRMIEA 186
Query: 351 KPGIAFVEFSDDVQASIAMQALQGFKITPQNPMAITYAKR 470
KPGIAFVEF DDVQ+S+AMQALQGFKITPQNPMA+TYAK+
Sbjct: 187 KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAVTYAKK 226
>ref|NP_180585.1| U2 small nuclear ribonucleoprotein B'' [Arabidopsis thaliana]
gi|75318049|sp|O22922.1|RU2B1_ARATH RecName: Full=U2
small nuclear ribonucleoprotein B''; Short=U2 snRNP B''
gi|2347192|gb|AAC16931.1| putative small nuclear
ribonucleoprotein U2B [Arabidopsis thaliana]
gi|27765024|gb|AAO23633.1| At2g30260 [Arabidopsis
thaliana] gi|110743428|dbj|BAE99600.1| putative small
nuclear ribonucleoprotein U2B [Arabidopsis thaliana]
gi|330253269|gb|AEC08363.1| U2 small nuclear
ribonucleoprotein B'' [Arabidopsis thaliana]
Length = 232
Score = 171 bits (434), Expect = 2e-40
Identities = 87/156 (55%), Positives = 107/156 (68%)
Frame = +3
Query: 3 YDKPMRIQYAKSKSDCIAKEDGTFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGGL 182
YDKPMR+QYAK+KSDC+AK +GTFVP NG
Sbjct: 78 YDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREDSQRPNTANGPS-ANGPS 136
Query: 183 SSSQVPRHAKPGSQEPAAAPNNILFIENLPHETTKMVLEILFQQYPGFSEVRMIEAKPGI 362
+++ VP + S + PNNILFI+NLPHETT M+L++LF+QYPGF E+RMI+AKPGI
Sbjct: 137 ANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGI 196
Query: 363 AFVEFSDDVQASIAMQALQGFKITPQNPMAITYAKR 470
AFVE+ DDVQASIAMQ LQGFKITPQNPM I++AK+
Sbjct: 197 AFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232
>gb|AAM64950.1| putative small nuclear ribonucleoprotein U2B [Arabidopsis thaliana]
Length = 232
Score = 171 bits (434), Expect = 2e-40
Identities = 87/156 (55%), Positives = 107/156 (68%)
Frame = +3
Query: 3 YDKPMRIQYAKSKSDCIAKEDGTFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGGL 182
YDKPMR+QYAK+KSDC+AK +GTFVP NG
Sbjct: 78 YDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREESQRPNTANGPS-ANGPS 136
Query: 183 SSSQVPRHAKPGSQEPAAAPNNILFIENLPHETTKMVLEILFQQYPGFSEVRMIEAKPGI 362
+++ VP + S + PNNILFI+NLPHETT M+L++LF+QYPGF E+RMI+AKPGI
Sbjct: 137 ANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGI 196
Query: 363 AFVEFSDDVQASIAMQALQGFKITPQNPMAITYAKR 470
AFVE+ DDVQASIAMQ LQGFKITPQNPM I++AK+
Sbjct: 197 AFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232
>ref|XP_003615951.1| U1 small nuclear ribonucleoprotein A [Medicago truncatula]
gi|355517286|gb|AES98909.1| U1 small nuclear
ribonucleoprotein A [Medicago truncatula]
gi|388501104|gb|AFK38618.1| unknown [Medicago
truncatula]
Length = 233
Score = 171 bits (432), Expect = 3e-40
Identities = 87/156 (55%), Positives = 104/156 (66%)
Frame = +3
Query: 3 YDKPMRIQYAKSKSDCIAKEDGTFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGGL 182
Y+KPMRIQYAK+KSDCIAKE+G+FVP T+G
Sbjct: 78 YEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESKQSAVPNGGTHGAS 137
Query: 183 SSSQVPRHAKPGSQEPAAAPNNILFIENLPHETTKMVLEILFQQYPGFSEVRMIEAKPGI 362
+ + AAAPNNILFIENLP+ETT +LE+LF+QYPGF EVR+IEAKPGI
Sbjct: 138 NGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPGI 197
Query: 363 AFVEFSDDVQASIAMQALQGFKITPQNPMAITYAKR 470
AFV+F DD Q+S+AMQALQGFKITPQNPM I +AK+
Sbjct: 198 AFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
>ref|XP_002517742.1| small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus
communis] gi|223543140|gb|EEF44674.1| small nuclear
ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
Length = 233
Score = 171 bits (432), Expect = 3e-40
Identities = 91/157 (57%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Frame = +3
Query: 3 YDKPMRIQYAKSKSDCIAKEDGTFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGGL 182
YDKPMRIQYAK+KSDC+ + +G + P T+
Sbjct: 78 YDKPMRIQYAKTKSDCLVEAEGNYDPNAKKKKKQEEKAERKRRAEEAQQSATANGTSTVN 137
Query: 183 SSSQVP-RHAKPGSQEPAAAPNNILFIENLPHETTKMVLEILFQQYPGFSEVRMIEAKPG 359
+ P R G QE AA PNNILFI+NLPHETT M+L++LFQQYPGF EVRMIEAKPG
Sbjct: 138 NRGTAPFRQGNRGEQE-AAPPNNILFIQNLPHETTSMMLQVLFQQYPGFREVRMIEAKPG 196
Query: 360 IAFVEFSDDVQASIAMQALQGFKITPQNPMAITYAKR 470
IAFVEF DDVQ+S+AMQALQ FKITPQNPMAITYAK+
Sbjct: 197 IAFVEFEDDVQSSMAMQALQSFKITPQNPMAITYAKK 233
>ref|XP_002326095.2| hypothetical protein POPTR_0019s14440g [Populus trichocarpa]
gi|550317555|gb|EEF00477.2| hypothetical protein
POPTR_0019s14440g [Populus trichocarpa]
Length = 275
Score = 170 bits (430), Expect = 5e-40
Identities = 93/160 (58%), Positives = 107/160 (66%), Gaps = 4/160 (2%)
Frame = +3
Query: 3 YDKPMRIQYAKSKSDCIAKEDGTFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----T 170
YDKPMRIQYAK+KSDCIA+ +G + P +
Sbjct: 120 YDKPMRIQYAKTKSDCIAEAEGVYDPNAKKKKKQEEKAERKKRAEEAQQSAPANGKPAES 179
Query: 171 NGGLSSSQVPRHAKPGSQEPAAAPNNILFIENLPHETTKMVLEILFQQYPGFSEVRMIEA 350
NGG +S R +QE PNNILFI+NLPHETT M+L++LFQQYPGF EVRMIEA
Sbjct: 180 NGGPTSF---RQGNQSAQE-TVPPNNILFIQNLPHETTSMMLQVLFQQYPGFREVRMIEA 235
Query: 351 KPGIAFVEFSDDVQASIAMQALQGFKITPQNPMAITYAKR 470
KPGIAFVEF DDVQ+S+AMQALQGFKITPQNPMAITYAK+
Sbjct: 236 KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITYAKK 275