BLASTX nr result
ID: Zingiber23_contig00017460
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00017460
(574 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002271864.1| PREDICTED: U2 small nuclear ribonucleoprotei... 155 5e-36
ref|NP_001275192.1| spliceosomal protein [Solanum tuberosum] gi|... 154 1e-35
gb|ABK22144.1| unknown [Picea sitchensis] 154 1e-35
ref|XP_006350871.1| PREDICTED: U2 small nuclear ribonucleoprotei... 154 2e-35
ref|XP_006828170.1| hypothetical protein AMTR_s00023p00113610 [A... 154 2e-35
ref|XP_004242495.1| PREDICTED: U2 small nuclear ribonucleoprotei... 152 6e-35
ref|XP_002517742.1| small nuclear ribonucleoprotein U)1a,U)2b, p... 151 1e-34
ref|XP_006376549.1| small nuclear ribonucleoprotein U2B [Populus... 150 2e-34
ref|XP_006376548.1| hypothetical protein POPTR_0013s14980g [Popu... 150 2e-34
ref|XP_002326095.2| hypothetical protein POPTR_0019s14440g [Popu... 149 7e-34
ref|XP_006431966.1| hypothetical protein CICLE_v10002361mg [Citr... 147 1e-33
ref|XP_006431965.1| hypothetical protein CICLE_v10002361mg [Citr... 147 1e-33
gb|EXB56616.1| U2 small nuclear ribonucleoprotein B'' [Morus not... 147 2e-33
ref|XP_006468132.1| PREDICTED: U2 small nuclear ribonucleoprotei... 146 4e-33
ref|XP_002465403.1| hypothetical protein SORBIDRAFT_01g038060 [S... 144 1e-32
ref|NP_001169386.1| uncharacterized protein LOC100383254 [Zea ma... 144 2e-32
ref|NP_001149883.1| spliceosomal protein [Zea mays] gi|194696844... 144 2e-32
sp|B8AM21.1|RU2B_ORYSI RecName: Full=U2 small nuclear ribonucleo... 143 4e-32
gb|ABF95465.1| RNA recognition motif family protein, expressed [... 143 4e-32
ref|NP_001049846.1| Os03g0298800 [Oryza sativa Japonica Group] g... 143 4e-32
>ref|XP_002271864.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Vitis vinifera]
gi|297745807|emb|CBI15863.3| unnamed protein product
[Vitis vinifera]
Length = 234
Score = 155 bits (393), Expect = 5e-36
Identities = 74/90 (82%), Positives = 82/90 (91%)
Frame = +2
Query: 14 RQAKPGSQEPAAAPNNILFIQNLPHETTKMVLEILFQQYPGFTEVRMIEAKPGIAFVEFS 193
RQ G++EP AAPNNILFIQNLPH+TT M+L++LFQQYPGF EVRMIEAKPGIAFVEF
Sbjct: 145 RQGNQGAREPEAAPNNILFIQNLPHQTTSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFE 204
Query: 194 DDVQSSIAMQALQGFKITPQNPMAITYAKK 283
DDVQSS+AM+ALQGFKITPQNPMAI YAKK
Sbjct: 205 DDVQSSMAMEALQGFKITPQNPMAIAYAKK 234
>ref|NP_001275192.1| spliceosomal protein [Solanum tuberosum] gi|169589|gb|AAA33847.1|
spliceosomal protein [Solanum tuberosum]
Length = 231
Score = 154 bits (390), Expect = 1e-35
Identities = 76/90 (84%), Positives = 82/90 (91%)
Frame = +2
Query: 14 RQAKPGSQEPAAAPNNILFIQNLPHETTKMVLEILFQQYPGFTEVRMIEAKPGIAFVEFS 193
RQ KP +Q+ A PNNILFIQNLPHETT M+LE+LF+QYPGF EVRMIEAKPGIAFVEF
Sbjct: 143 RQGKPSAQD-VAEPNNILFIQNLPHETTSMMLEVLFKQYPGFREVRMIEAKPGIAFVEFD 201
Query: 194 DDVQSSIAMQALQGFKITPQNPMAITYAKK 283
DDVQSS+AMQALQGFKITPQNPMAITYAKK
Sbjct: 202 DDVQSSVAMQALQGFKITPQNPMAITYAKK 231
>gb|ABK22144.1| unknown [Picea sitchensis]
Length = 235
Score = 154 bits (390), Expect = 1e-35
Identities = 73/90 (81%), Positives = 82/90 (91%)
Frame = +2
Query: 14 RQAKPGSQEPAAAPNNILFIQNLPHETTKMVLEILFQQYPGFTEVRMIEAKPGIAFVEFS 193
+Q KP SQEP A PNNILFIQNLPHETT M+L++LFQQYPGF EVRMIEAKPGIAFVE+
Sbjct: 146 QQGKPSSQEPPAPPNNILFIQNLPHETTTMMLQMLFQQYPGFKEVRMIEAKPGIAFVEYG 205
Query: 194 DDVQSSIAMQALQGFKITPQNPMAITYAKK 283
D++Q+S+AMQALQGFKITPQNPM ITYAKK
Sbjct: 206 DEMQASVAMQALQGFKITPQNPMLITYAKK 235
>ref|XP_006350871.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Solanum
tuberosum]
Length = 232
Score = 154 bits (389), Expect = 2e-35
Identities = 76/90 (84%), Positives = 82/90 (91%)
Frame = +2
Query: 14 RQAKPGSQEPAAAPNNILFIQNLPHETTKMVLEILFQQYPGFTEVRMIEAKPGIAFVEFS 193
RQ KP +Q+ A PNNILFIQNLPHETT M+LE+LF+QYPGF EVRMIEAKPGIAFVEF
Sbjct: 144 RQGKPSAQD-IAEPNNILFIQNLPHETTSMMLEVLFKQYPGFREVRMIEAKPGIAFVEFD 202
Query: 194 DDVQSSIAMQALQGFKITPQNPMAITYAKK 283
DDVQSS+AMQALQGFKITPQNPMAITYAKK
Sbjct: 203 DDVQSSVAMQALQGFKITPQNPMAITYAKK 232
>ref|XP_006828170.1| hypothetical protein AMTR_s00023p00113610 [Amborella trichopoda]
gi|548832817|gb|ERM95586.1| hypothetical protein
AMTR_s00023p00113610 [Amborella trichopoda]
Length = 234
Score = 154 bits (389), Expect = 2e-35
Identities = 72/94 (76%), Positives = 85/94 (90%)
Frame = +2
Query: 2 SQVPRQAKPGSQEPAAAPNNILFIQNLPHETTKMVLEILFQQYPGFTEVRMIEAKPGIAF 181
S R KPG+QE AA+PN+ILFIQNLPHETT M+L++LFQQYPGF EVRM+EAKPGI+F
Sbjct: 141 SHTSRPGKPGAQEGAASPNSILFIQNLPHETTSMMLQMLFQQYPGFKEVRMVEAKPGISF 200
Query: 182 VEFSDDVQSSIAMQALQGFKITPQNPMAITYAKK 283
VE++D++Q+SIAMQALQGFKITPQNPM ITYAKK
Sbjct: 201 VEYADEIQASIAMQALQGFKITPQNPMGITYAKK 234
>ref|XP_004242495.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Solanum
lycopersicum]
Length = 233
Score = 152 bits (384), Expect = 6e-35
Identities = 75/90 (83%), Positives = 82/90 (91%)
Frame = +2
Query: 14 RQAKPGSQEPAAAPNNILFIQNLPHETTKMVLEILFQQYPGFTEVRMIEAKPGIAFVEFS 193
RQ KP +Q+ A PNNILFIQNLP+ETT M+LE+LF+QYPGF EVRMIEAKPGIAFVEF
Sbjct: 145 RQGKPSAQD-VAEPNNILFIQNLPYETTSMMLEVLFKQYPGFREVRMIEAKPGIAFVEFD 203
Query: 194 DDVQSSIAMQALQGFKITPQNPMAITYAKK 283
DDVQSS+AMQALQGFKITPQNPMAITYAKK
Sbjct: 204 DDVQSSVAMQALQGFKITPQNPMAITYAKK 233
>ref|XP_002517742.1| small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus
communis] gi|223543140|gb|EEF44674.1| small nuclear
ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
Length = 233
Score = 151 bits (381), Expect = 1e-34
Identities = 76/90 (84%), Positives = 80/90 (88%)
Frame = +2
Query: 14 RQAKPGSQEPAAAPNNILFIQNLPHETTKMVLEILFQQYPGFTEVRMIEAKPGIAFVEFS 193
RQ G QE AA PNNILFIQNLPHETT M+L++LFQQYPGF EVRMIEAKPGIAFVEF
Sbjct: 145 RQGNRGEQE-AAPPNNILFIQNLPHETTSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFE 203
Query: 194 DDVQSSIAMQALQGFKITPQNPMAITYAKK 283
DDVQSS+AMQALQ FKITPQNPMAITYAKK
Sbjct: 204 DDVQSSMAMQALQSFKITPQNPMAITYAKK 233
>ref|XP_006376549.1| small nuclear ribonucleoprotein U2B [Populus trichocarpa]
gi|550325877|gb|ERP54346.1| small nuclear
ribonucleoprotein U2B [Populus trichocarpa]
Length = 233
Score = 150 bits (379), Expect = 2e-34
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +2
Query: 14 RQAKPGSQEPAAAPNNILFIQNLPHETTKMVLEILFQQYPGFTEVRMIEAKPGIAFVEFS 193
R G+QE A PNNILFIQNLPHETT M+L++LFQQYPGF EVRMIEAKPGIAFVEF
Sbjct: 145 RHGNQGAQE-TAPPNNILFIQNLPHETTSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFE 203
Query: 194 DDVQSSIAMQALQGFKITPQNPMAITYAKK 283
DDVQSS+AMQALQGFKITPQNPMA+TYAKK
Sbjct: 204 DDVQSSMAMQALQGFKITPQNPMAVTYAKK 233
>ref|XP_006376548.1| hypothetical protein POPTR_0013s14980g [Populus trichocarpa]
gi|550325876|gb|ERP54345.1| hypothetical protein
POPTR_0013s14980g [Populus trichocarpa]
Length = 226
Score = 150 bits (379), Expect = 2e-34
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +2
Query: 14 RQAKPGSQEPAAAPNNILFIQNLPHETTKMVLEILFQQYPGFTEVRMIEAKPGIAFVEFS 193
R G+QE A PNNILFIQNLPHETT M+L++LFQQYPGF EVRMIEAKPGIAFVEF
Sbjct: 138 RHGNQGAQE-TAPPNNILFIQNLPHETTSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFE 196
Query: 194 DDVQSSIAMQALQGFKITPQNPMAITYAKK 283
DDVQSS+AMQALQGFKITPQNPMA+TYAKK
Sbjct: 197 DDVQSSMAMQALQGFKITPQNPMAVTYAKK 226
>ref|XP_002326095.2| hypothetical protein POPTR_0019s14440g [Populus trichocarpa]
gi|550317555|gb|EEF00477.2| hypothetical protein
POPTR_0019s14440g [Populus trichocarpa]
Length = 275
Score = 149 bits (375), Expect = 7e-34
Identities = 74/90 (82%), Positives = 79/90 (87%)
Frame = +2
Query: 14 RQAKPGSQEPAAAPNNILFIQNLPHETTKMVLEILFQQYPGFTEVRMIEAKPGIAFVEFS 193
RQ +QE PNNILFIQNLPHETT M+L++LFQQYPGF EVRMIEAKPGIAFVEF
Sbjct: 187 RQGNQSAQE-TVPPNNILFIQNLPHETTSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFE 245
Query: 194 DDVQSSIAMQALQGFKITPQNPMAITYAKK 283
DDVQSS+AMQALQGFKITPQNPMAITYAKK
Sbjct: 246 DDVQSSMAMQALQGFKITPQNPMAITYAKK 275
>ref|XP_006431966.1| hypothetical protein CICLE_v10002361mg [Citrus clementina]
gi|557534088|gb|ESR45206.1| hypothetical protein
CICLE_v10002361mg [Citrus clementina]
Length = 220
Score = 147 bits (372), Expect = 1e-33
Identities = 72/82 (87%), Positives = 77/82 (93%)
Frame = +2
Query: 38 EPAAAPNNILFIQNLPHETTKMVLEILFQQYPGFTEVRMIEAKPGIAFVEFSDDVQSSIA 217
+ AAAPNNILFIQNLPHETT +LE+LFQQYPGF EVRMIEAKPGIAFVEF DDVQSS+A
Sbjct: 139 QEAAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMA 198
Query: 218 MQALQGFKITPQNPMAITYAKK 283
MQALQGFKITPQNPMAIT+AKK
Sbjct: 199 MQALQGFKITPQNPMAITFAKK 220
>ref|XP_006431965.1| hypothetical protein CICLE_v10002361mg [Citrus clementina]
gi|557534087|gb|ESR45205.1| hypothetical protein
CICLE_v10002361mg [Citrus clementina]
Length = 231
Score = 147 bits (372), Expect = 1e-33
Identities = 72/82 (87%), Positives = 77/82 (93%)
Frame = +2
Query: 38 EPAAAPNNILFIQNLPHETTKMVLEILFQQYPGFTEVRMIEAKPGIAFVEFSDDVQSSIA 217
+ AAAPNNILFIQNLPHETT +LE+LFQQYPGF EVRMIEAKPGIAFVEF DDVQSS+A
Sbjct: 150 QEAAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMA 209
Query: 218 MQALQGFKITPQNPMAITYAKK 283
MQALQGFKITPQNPMAIT+AKK
Sbjct: 210 MQALQGFKITPQNPMAITFAKK 231
>gb|EXB56616.1| U2 small nuclear ribonucleoprotein B'' [Morus notabilis]
Length = 267
Score = 147 bits (371), Expect = 2e-33
Identities = 74/90 (82%), Positives = 81/90 (90%)
Frame = +2
Query: 14 RQAKPGSQEPAAAPNNILFIQNLPHETTKMVLEILFQQYPGFTEVRMIEAKPGIAFVEFS 193
RQ +QE AAAPNNILFI+NLPHET M+LE+LF+QYPGF EVRMIEAKPGIAFVEF
Sbjct: 179 RQGNMRAQE-AAAPNNILFIENLPHETNSMMLELLFRQYPGFREVRMIEAKPGIAFVEFE 237
Query: 194 DDVQSSIAMQALQGFKITPQNPMAITYAKK 283
DDVQSS+AMQALQGFKITPQNPMAIT+AKK
Sbjct: 238 DDVQSSMAMQALQGFKITPQNPMAITFAKK 267
>ref|XP_006468132.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Citrus
sinensis]
Length = 231
Score = 146 bits (368), Expect = 4e-33
Identities = 71/82 (86%), Positives = 76/82 (92%)
Frame = +2
Query: 38 EPAAAPNNILFIQNLPHETTKMVLEILFQQYPGFTEVRMIEAKPGIAFVEFSDDVQSSIA 217
+ AAPNNILFIQNLPHETT +LE+LFQQYPGF EVRMIEAKPGIAFVEF DDVQSS+A
Sbjct: 150 QETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMA 209
Query: 218 MQALQGFKITPQNPMAITYAKK 283
MQALQGFKITPQNPMAIT+AKK
Sbjct: 210 MQALQGFKITPQNPMAITFAKK 231
>ref|XP_002465403.1| hypothetical protein SORBIDRAFT_01g038060 [Sorghum bicolor]
gi|241919257|gb|EER92401.1| hypothetical protein
SORBIDRAFT_01g038060 [Sorghum bicolor]
Length = 233
Score = 144 bits (364), Expect = 1e-32
Identities = 70/84 (83%), Positives = 76/84 (90%)
Frame = +2
Query: 32 SQEPAAAPNNILFIQNLPHETTKMVLEILFQQYPGFTEVRMIEAKPGIAFVEFSDDVQSS 211
SQEP A PNNILFIQNLP +TT M+L+ILFQQYPGF EVRMIEAKPGIAFVEF DD QS
Sbjct: 150 SQEPPAPPNNILFIQNLPDQTTSMMLQILFQQYPGFREVRMIEAKPGIAFVEFEDDSQSM 209
Query: 212 IAMQALQGFKITPQNPMAITYAKK 283
+AMQALQGFKITP+NPMAI+YAKK
Sbjct: 210 VAMQALQGFKITPENPMAISYAKK 233
>ref|NP_001169386.1| uncharacterized protein LOC100383254 [Zea mays]
gi|224029017|gb|ACN33584.1| unknown [Zea mays]
gi|414866361|tpg|DAA44918.1| TPA: hypothetical protein
ZEAMMB73_448604 [Zea mays]
Length = 233
Score = 144 bits (363), Expect = 2e-32
Identities = 70/84 (83%), Positives = 76/84 (90%)
Frame = +2
Query: 32 SQEPAAAPNNILFIQNLPHETTKMVLEILFQQYPGFTEVRMIEAKPGIAFVEFSDDVQSS 211
SQEP A PNNILFIQNLP +TT M+L+ILFQQYPGF EVRMIEAKPGIAFVEF DD QS
Sbjct: 150 SQEPPAPPNNILFIQNLPDQTTSMMLQILFQQYPGFREVRMIEAKPGIAFVEFEDDGQSM 209
Query: 212 IAMQALQGFKITPQNPMAITYAKK 283
+AMQALQGFKITP+NPMAI+YAKK
Sbjct: 210 VAMQALQGFKITPENPMAISYAKK 233
>ref|NP_001149883.1| spliceosomal protein [Zea mays] gi|194696844|gb|ACF82506.1| unknown
[Zea mays] gi|195635261|gb|ACG37099.1| spliceosomal
protein [Zea mays] gi|195659375|gb|ACG49155.1|
spliceosomal protein [Zea mays]
gi|413956009|gb|AFW88658.1| Spliceosomal protein [Zea
mays]
Length = 233
Score = 144 bits (363), Expect = 2e-32
Identities = 70/84 (83%), Positives = 76/84 (90%)
Frame = +2
Query: 32 SQEPAAAPNNILFIQNLPHETTKMVLEILFQQYPGFTEVRMIEAKPGIAFVEFSDDVQSS 211
SQEP A PNNILFIQNLP +TT M+L+ILFQQYPGF EVRMIEAKPGIAFVEF DD QS
Sbjct: 150 SQEPPAPPNNILFIQNLPDQTTSMMLQILFQQYPGFREVRMIEAKPGIAFVEFEDDGQSM 209
Query: 212 IAMQALQGFKITPQNPMAITYAKK 283
+AMQALQGFKITP+NPMAI+YAKK
Sbjct: 210 VAMQALQGFKITPENPMAISYAKK 233
>sp|B8AM21.1|RU2B_ORYSI RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B'' gi|218192634|gb|EEC75061.1| hypothetical
protein OsI_11177 [Oryza sativa Indica Group]
Length = 232
Score = 143 bits (360), Expect = 4e-32
Identities = 70/84 (83%), Positives = 75/84 (89%)
Frame = +2
Query: 32 SQEPAAAPNNILFIQNLPHETTKMVLEILFQQYPGFTEVRMIEAKPGIAFVEFSDDVQSS 211
SQEP A PNNILFIQNLP ETT M+L+ILFQQYPGF EVRMIEAKPGIAFVE+ DD QS
Sbjct: 149 SQEPPAPPNNILFIQNLPAETTSMMLQILFQQYPGFREVRMIEAKPGIAFVEYEDDSQSM 208
Query: 212 IAMQALQGFKITPQNPMAITYAKK 283
+AMQALQGFKITP NPMAI+YAKK
Sbjct: 209 VAMQALQGFKITPYNPMAISYAKK 232
>gb|ABF95465.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 231
Score = 143 bits (360), Expect = 4e-32
Identities = 70/84 (83%), Positives = 75/84 (89%)
Frame = +2
Query: 32 SQEPAAAPNNILFIQNLPHETTKMVLEILFQQYPGFTEVRMIEAKPGIAFVEFSDDVQSS 211
SQEP A PNNILFIQNLP ETT M+L+ILFQQYPGF EVRMIEAKPGIAFVE+ DD QS
Sbjct: 148 SQEPPAPPNNILFIQNLPAETTSMMLQILFQQYPGFREVRMIEAKPGIAFVEYEDDSQSM 207
Query: 212 IAMQALQGFKITPQNPMAITYAKK 283
+AMQALQGFKITP NPMAI+YAKK
Sbjct: 208 VAMQALQGFKITPYNPMAISYAKK 231
>ref|NP_001049846.1| Os03g0298800 [Oryza sativa Japonica Group]
gi|122247158|sp|Q10MR0.1|RU2B_ORYSJ RecName: Full=U2
small nuclear ribonucleoprotein B''; Short=U2 snRNP B''
gi|108707669|gb|ABF95464.1| RNA recognition motif family
protein, expressed [Oryza sativa Japonica Group]
gi|113548317|dbj|BAF11760.1| Os03g0298800 [Oryza sativa
Japonica Group] gi|215737098|dbj|BAG96027.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|222624757|gb|EEE58889.1| hypothetical protein
OsJ_10509 [Oryza sativa Japonica Group]
Length = 232
Score = 143 bits (360), Expect = 4e-32
Identities = 70/84 (83%), Positives = 75/84 (89%)
Frame = +2
Query: 32 SQEPAAAPNNILFIQNLPHETTKMVLEILFQQYPGFTEVRMIEAKPGIAFVEFSDDVQSS 211
SQEP A PNNILFIQNLP ETT M+L+ILFQQYPGF EVRMIEAKPGIAFVE+ DD QS
Sbjct: 149 SQEPPAPPNNILFIQNLPAETTSMMLQILFQQYPGFREVRMIEAKPGIAFVEYEDDSQSM 208
Query: 212 IAMQALQGFKITPQNPMAITYAKK 283
+AMQALQGFKITP NPMAI+YAKK
Sbjct: 209 VAMQALQGFKITPYNPMAISYAKK 232