BLASTX nr result
ID: Zingiber23_contig00016169
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00016169
(531 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EMJ13361.1| hypothetical protein PRUPE_ppa012421mg [Prunus pe... 111 1e-22
ref|XP_002529881.1| Charged multivesicular body protein 2b-B, pu... 106 4e-21
ref|XP_004488206.1| PREDICTED: protein LSD1-like [Cicer arietinum] 105 6e-21
ref|XP_002276731.2| PREDICTED: protein LSD1 [Vitis vinifera] 104 1e-20
emb|CBI39012.3| unnamed protein product [Vitis vinifera] 104 1e-20
ref|XP_004158699.1| PREDICTED: protein LOL3-like [Cucumis sativus] 104 1e-20
ref|XP_004134888.1| PREDICTED: vacuolar protein sorting-associat... 104 1e-20
ref|XP_003546559.1| PREDICTED: protein LSD1-like isoform X1 [Gly... 104 1e-20
ref|NP_849549.1| zinc finger protein LSD1 [Arabidopsis thaliana]... 103 2e-20
ref|NP_001154257.1| zinc finger protein LSD1 [Arabidopsis thalia... 103 2e-20
ref|NP_849548.1| zinc finger protein LSD1 [Arabidopsis thaliana]... 103 2e-20
ref|XP_006284594.1| hypothetical protein CARUB_v10005824mg [Caps... 102 5e-20
gb|ADM52200.1| zinc finger protein LSD1 [Pisum sativum] 102 7e-20
ref|XP_002300492.1| LESION SIMULATING DISEASE family protein [Po... 102 7e-20
gb|EOY25562.1| LSD1 zinc finger family protein isoform 3, partia... 101 9e-20
gb|EOY25560.1| LSD1 zinc finger family protein isoform 1 [Theobr... 101 9e-20
ref|XP_003630014.1| Lsd1-like protein [Medicago truncatula] gi|3... 101 9e-20
ref|XP_003630013.1| Lsd1-like protein [Medicago truncatula] gi|3... 101 9e-20
ref|XP_003630012.1| Lsd1-like protein [Medicago truncatula] gi|3... 101 9e-20
gb|ADK63407.1| zinc finger protein [Brassica rapa] 101 9e-20
>gb|EMJ13361.1| hypothetical protein PRUPE_ppa012421mg [Prunus persica]
gi|462408028|gb|EMJ13362.1| hypothetical protein
PRUPE_ppa012421mg [Prunus persica]
Length = 170
Score = 111 bits (277), Expect = 1e-22
Identities = 59/82 (71%), Positives = 63/82 (76%), Gaps = 2/82 (2%)
Frame = +1
Query: 1 GNCRTTLMYPYGASSVKCAICHYITNVGMPNMRIPAPEAPRPNETA--PIRPSTSHSSRV 174
GNCRTTLMYPYGA SVKCA+CHY+TNVGM NMR+P P RPN TA PSTS S
Sbjct: 85 GNCRTTLMYPYGAPSVKCAVCHYVTNVGMTNMRVPIP-VHRPNGTANSGTAPSTSASQ-- 141
Query: 175 PNTTVVVENPMTVDESGKLVSN 240
TVVVENPM+VDESGKLVSN
Sbjct: 142 ---TVVVENPMSVDESGKLVSN 160
>ref|XP_002529881.1| Charged multivesicular body protein 2b-B, putative [Ricinus
communis] gi|223530608|gb|EEF32484.1| Charged
multivesicular body protein 2b-B, putative [Ricinus
communis]
Length = 405
Score = 106 bits (264), Expect = 4e-21
Identities = 54/80 (67%), Positives = 62/80 (77%), Gaps = 1/80 (1%)
Frame = +1
Query: 4 NCRTTLMYPYGASSVKCAICHYITNVGMPNMRIPAPEAPRPNETAPIRPSTSHSSRVPNT 183
NCRTTL+YPYGA SVKCA+CHY+TNV M N+R+ P RPN T + PSTS S+ T
Sbjct: 318 NCRTTLVYPYGAPSVKCALCHYVTNVSMGNVRVALP-TNRPNGTTGMTPSTSTSTSQSQT 376
Query: 184 -TVVVENPMTVDESGKLVSN 240
TVVVENPM+VDESGKLVSN
Sbjct: 377 QTVVVENPMSVDESGKLVSN 396
>ref|XP_004488206.1| PREDICTED: protein LSD1-like [Cicer arietinum]
Length = 171
Score = 105 bits (262), Expect = 6e-21
Identities = 55/80 (68%), Positives = 59/80 (73%)
Frame = +1
Query: 1 GNCRTTLMYPYGASSVKCAICHYITNVGMPNMRIPAPEAPRPNETAPIRPSTSHSSRVPN 180
GNCRTTLMYPYGA SVKCAICHYITNV M N R+P P RPNET S + R +
Sbjct: 85 GNCRTTLMYPYGAPSVKCAICHYITNVSMNNGRLPVP-TRRPNETT---SSETSRPRFES 140
Query: 181 TTVVVENPMTVDESGKLVSN 240
TVVVENPM+VD SGKLVSN
Sbjct: 141 QTVVVENPMSVDSSGKLVSN 160
>ref|XP_002276731.2| PREDICTED: protein LSD1 [Vitis vinifera]
Length = 264
Score = 104 bits (260), Expect = 1e-20
Identities = 55/82 (67%), Positives = 62/82 (75%), Gaps = 2/82 (2%)
Frame = +1
Query: 1 GNCRTTLMYPYGASSVKCAICHYITNVGMPNMRIPAPEAPRPNETA--PIRPSTSHSSRV 174
GNCRTTLMYPYGA SVKCA+CHY+T+VGM N+R+P P RPN A PSTS S
Sbjct: 179 GNCRTTLMYPYGAPSVKCAVCHYVTSVGMVNVRVPIP-VHRPNAAAISASTPSTSSSQ-- 235
Query: 175 PNTTVVVENPMTVDESGKLVSN 240
TVVV+NPM+VDESGKLVSN
Sbjct: 236 ---TVVVKNPMSVDESGKLVSN 254
>emb|CBI39012.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 104 bits (260), Expect = 1e-20
Identities = 55/82 (67%), Positives = 62/82 (75%), Gaps = 2/82 (2%)
Frame = +1
Query: 1 GNCRTTLMYPYGASSVKCAICHYITNVGMPNMRIPAPEAPRPNETA--PIRPSTSHSSRV 174
GNCRTTLMYPYGA SVKCA+CHY+T+VGM N+R+P P RPN A PSTS S
Sbjct: 174 GNCRTTLMYPYGAPSVKCAVCHYVTSVGMVNVRVPIP-VHRPNAAAISASTPSTSSSQ-- 230
Query: 175 PNTTVVVENPMTVDESGKLVSN 240
TVVV+NPM+VDESGKLVSN
Sbjct: 231 ---TVVVKNPMSVDESGKLVSN 249
>ref|XP_004158699.1| PREDICTED: protein LOL3-like [Cucumis sativus]
Length = 343
Score = 104 bits (259), Expect = 1e-20
Identities = 51/81 (62%), Positives = 64/81 (79%), Gaps = 1/81 (1%)
Frame = +1
Query: 1 GNCRTTLMYPYGASSVKCAICHYITNVGMPNMRIPAPEAPRPNE-TAPIRPSTSHSSRVP 177
GNCRTTL++PYGA SVKCAICHY+TNVG+ N+R+P P R ++ + PS+S S+
Sbjct: 253 GNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSVRSQSQ 312
Query: 178 NTTVVVENPMTVDESGKLVSN 240
+ TVVVENPM+VDESGKLVSN
Sbjct: 313 SQTVVVENPMSVDESGKLVSN 333
>ref|XP_004134888.1| PREDICTED: vacuolar protein sorting-associated protein 2 homolog
2-like [Cucumis sativus]
Length = 410
Score = 104 bits (259), Expect = 1e-20
Identities = 51/81 (62%), Positives = 64/81 (79%), Gaps = 1/81 (1%)
Frame = +1
Query: 1 GNCRTTLMYPYGASSVKCAICHYITNVGMPNMRIPAPEAPRPNE-TAPIRPSTSHSSRVP 177
GNCRTTL++PYGA SVKCAICHY+TNVG+ N+R+P P R ++ + PS+S S+
Sbjct: 320 GNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSVRSQSQ 379
Query: 178 NTTVVVENPMTVDESGKLVSN 240
+ TVVVENPM+VDESGKLVSN
Sbjct: 380 SQTVVVENPMSVDESGKLVSN 400
>ref|XP_003546559.1| PREDICTED: protein LSD1-like isoform X1 [Glycine max]
Length = 176
Score = 104 bits (259), Expect = 1e-20
Identities = 56/82 (68%), Positives = 62/82 (75%), Gaps = 3/82 (3%)
Frame = +1
Query: 4 NCRTTLMYPYGASSVKCAICHYITNVGMPNMRIPAPEAPRPNETAPIRPSTSHSSRVPNT 183
NCRTTLMYPYGASSVKCAIC YITNV M N R+P P RPN TA +S SS +P++
Sbjct: 86 NCRTTLMYPYGASSVKCAICRYITNVSMTNGRLPIP-VQRPNGTANSGTVSSTSSSMPHS 144
Query: 184 ---TVVVENPMTVDESGKLVSN 240
TVVVENPM+VD SGKLVSN
Sbjct: 145 QSQTVVVENPMSVDSSGKLVSN 166
>ref|NP_849549.1| zinc finger protein LSD1 [Arabidopsis thaliana]
gi|145333512|ref|NP_001078413.1| zinc finger protein
LSD1 [Arabidopsis thaliana]
gi|75101274|sp|P94077.1|LSD1_ARATH RecName: Full=Protein
LSD1; AltName: Full=Protein CHILLING SENSITIVE 4;
AltName: Full=Protein LESION SIMULATING DISEASE 1;
Short=AtLSD1; AltName: Full=Putative zinc finger LSD1
gi|1872521|gb|AAC49660.1| zinc-finger protein Lsd1
[Arabidopsis thaliana] gi|1872523|gb|AAC49661.1|
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|5262161|emb|CAB45804.1| zinc-finger protein Lsd1
[Arabidopsis thaliana] gi|7268834|emb|CAB79038.1|
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|332658915|gb|AEE84315.1| zinc finger protein LSD1
[Arabidopsis thaliana] gi|332658921|gb|AEE84321.1| zinc
finger protein LSD1 [Arabidopsis thaliana]
Length = 189
Score = 103 bits (258), Expect = 2e-20
Identities = 56/81 (69%), Positives = 63/81 (77%), Gaps = 1/81 (1%)
Frame = +1
Query: 1 GNCRTTLMYPYGASSVKCAICHYITNVGMPNMRIPAPEAPRPNETAPIRPSTSHSSRVPN 180
G+CRTTLMYPYGASSVKCA+C ++TNV M N R+P P RPN TA PSTS S+
Sbjct: 101 GHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLP-TNRPNGTA-CPPSTSTSTPPSQ 158
Query: 181 T-TVVVENPMTVDESGKLVSN 240
T TVVVENPM+VDESGKLVSN
Sbjct: 159 TQTVVVENPMSVDESGKLVSN 179
>ref|NP_001154257.1| zinc finger protein LSD1 [Arabidopsis thaliana]
gi|332658922|gb|AEE84322.1| zinc finger protein LSD1
[Arabidopsis thaliana]
Length = 210
Score = 103 bits (258), Expect = 2e-20
Identities = 56/81 (69%), Positives = 63/81 (77%), Gaps = 1/81 (1%)
Frame = +1
Query: 1 GNCRTTLMYPYGASSVKCAICHYITNVGMPNMRIPAPEAPRPNETAPIRPSTSHSSRVPN 180
G+CRTTLMYPYGASSVKCA+C ++TNV M N R+P P RPN TA PSTS S+
Sbjct: 122 GHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLP-TNRPNGTA-CPPSTSTSTPPSQ 179
Query: 181 T-TVVVENPMTVDESGKLVSN 240
T TVVVENPM+VDESGKLVSN
Sbjct: 180 TQTVVVENPMSVDESGKLVSN 200
>ref|NP_849548.1| zinc finger protein LSD1 [Arabidopsis thaliana]
gi|30685087|ref|NP_567599.3| zinc finger protein LSD1
[Arabidopsis thaliana] gi|79325187|ref|NP_001031678.1|
zinc finger protein LSD1 [Arabidopsis thaliana]
gi|79325189|ref|NP_001031679.1| zinc finger protein LSD1
[Arabidopsis thaliana] gi|145323158|ref|NP_001031680.2|
zinc finger protein LSD1 [Arabidopsis thaliana]
gi|19423936|gb|AAL87301.1| putative zinc-finger protein
Lsd1 [Arabidopsis thaliana] gi|21436207|gb|AAM51391.1|
putative zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|21593381|gb|AAM65330.1| zinc-finger protein Lsd1
[Arabidopsis thaliana] gi|332658916|gb|AEE84316.1| zinc
finger protein LSD1 [Arabidopsis thaliana]
gi|332658917|gb|AEE84317.1| zinc finger protein LSD1
[Arabidopsis thaliana] gi|332658918|gb|AEE84318.1| zinc
finger protein LSD1 [Arabidopsis thaliana]
gi|332658919|gb|AEE84319.1| zinc finger protein LSD1
[Arabidopsis thaliana] gi|332658920|gb|AEE84320.1| zinc
finger protein LSD1 [Arabidopsis thaliana]
Length = 184
Score = 103 bits (258), Expect = 2e-20
Identities = 56/81 (69%), Positives = 63/81 (77%), Gaps = 1/81 (1%)
Frame = +1
Query: 1 GNCRTTLMYPYGASSVKCAICHYITNVGMPNMRIPAPEAPRPNETAPIRPSTSHSSRVPN 180
G+CRTTLMYPYGASSVKCA+C ++TNV M N R+P P RPN TA PSTS S+
Sbjct: 96 GHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLP-TNRPNGTA-CPPSTSTSTPPSQ 153
Query: 181 T-TVVVENPMTVDESGKLVSN 240
T TVVVENPM+VDESGKLVSN
Sbjct: 154 TQTVVVENPMSVDESGKLVSN 174
>ref|XP_006284594.1| hypothetical protein CARUB_v10005824mg [Capsella rubella]
gi|565446195|ref|XP_006284595.1| hypothetical protein
CARUB_v10005824mg [Capsella rubella]
gi|482553299|gb|EOA17492.1| hypothetical protein
CARUB_v10005824mg [Capsella rubella]
gi|482553300|gb|EOA17493.1| hypothetical protein
CARUB_v10005824mg [Capsella rubella]
Length = 185
Score = 102 bits (254), Expect = 5e-20
Identities = 55/81 (67%), Positives = 62/81 (76%), Gaps = 1/81 (1%)
Frame = +1
Query: 1 GNCRTTLMYPYGASSVKCAICHYITNVGMPNMRIPAPEAPRPNETAPIRPSTSHSSRVPN 180
G+CRTTLMYPYGASSVKCA+C ++TNV M N R+P P RPN T PSTS S+
Sbjct: 99 GHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPIP-TNRPNGT---MPSTSTSTPPSQ 154
Query: 181 T-TVVVENPMTVDESGKLVSN 240
T TVVVENPM+VDESGKLVSN
Sbjct: 155 TQTVVVENPMSVDESGKLVSN 175
>gb|ADM52200.1| zinc finger protein LSD1 [Pisum sativum]
Length = 176
Score = 102 bits (253), Expect = 7e-20
Identities = 52/82 (63%), Positives = 60/82 (73%), Gaps = 3/82 (3%)
Frame = +1
Query: 4 NCRTTLMYPYGASSVKCAICHYITNVGMPNMRIPAPEAPRPNETAPIRPSTSHSSRVPNT 183
NCRTTLMYPYGA SVKCA+CHYITN+ M N R+P P A RP T + S S+ +P +
Sbjct: 86 NCRTTLMYPYGAPSVKCAVCHYITNINMSNGRVPVP-ANRPQGTTNLGTLPSTSTSMPQS 144
Query: 184 ---TVVVENPMTVDESGKLVSN 240
TVVVENPM+VD SGKLVSN
Sbjct: 145 QGQTVVVENPMSVDSSGKLVSN 166
>ref|XP_002300492.1| LESION SIMULATING DISEASE family protein [Populus trichocarpa]
gi|222847750|gb|EEE85297.1| LESION SIMULATING DISEASE
family protein [Populus trichocarpa]
Length = 174
Score = 102 bits (253), Expect = 7e-20
Identities = 55/84 (65%), Positives = 59/84 (70%), Gaps = 4/84 (4%)
Frame = +1
Query: 1 GNCRTTLMYPYGASSVKCAICHYITNVGMPNMRIPAPEAPRPNETAPIRPSTS----HSS 168
GNCRT LMYP G+ SVKC +CHY+TNV M NMRIP P A RPN PSTS HS
Sbjct: 85 GNCRTALMYPNGSPSVKCPVCHYVTNVSMANMRIPLP-ANRPNGIGGTAPSTSMPLPHSQ 143
Query: 169 RVPNTTVVVENPMTVDESGKLVSN 240
TVVVENPM+VDESGKLVSN
Sbjct: 144 ---TQTVVVENPMSVDESGKLVSN 164
>gb|EOY25562.1| LSD1 zinc finger family protein isoform 3, partial [Theobroma
cacao]
Length = 149
Score = 101 bits (252), Expect = 9e-20
Identities = 54/82 (65%), Positives = 61/82 (74%), Gaps = 2/82 (2%)
Frame = +1
Query: 1 GNCRTTLMYPYGASSVKCAICHYITNVGMPNMRIPAPEAPRPNETAP--IRPSTSHSSRV 174
G+CRTTLMYPYGA SVKCA+C Y+TNVGM N+R+P P RPN A PSTS S
Sbjct: 68 GHCRTTLMYPYGAPSVKCAVCQYVTNVGMGNVRVPLP-VNRPNGVAATGTTPSTSTSQ-- 124
Query: 175 PNTTVVVENPMTVDESGKLVSN 240
TVVVENPM+VDESGKLV+N
Sbjct: 125 ---TVVVENPMSVDESGKLVTN 143
>gb|EOY25560.1| LSD1 zinc finger family protein isoform 1 [Theobroma cacao]
Length = 170
Score = 101 bits (252), Expect = 9e-20
Identities = 54/82 (65%), Positives = 61/82 (74%), Gaps = 2/82 (2%)
Frame = +1
Query: 1 GNCRTTLMYPYGASSVKCAICHYITNVGMPNMRIPAPEAPRPNETAP--IRPSTSHSSRV 174
G+CRTTLMYPYGA SVKCA+C Y+TNVGM N+R+P P RPN A PSTS S
Sbjct: 85 GHCRTTLMYPYGAPSVKCAVCQYVTNVGMGNVRVPLP-VNRPNGVAATGTTPSTSTSQ-- 141
Query: 175 PNTTVVVENPMTVDESGKLVSN 240
TVVVENPM+VDESGKLV+N
Sbjct: 142 ---TVVVENPMSVDESGKLVTN 160
>ref|XP_003630014.1| Lsd1-like protein [Medicago truncatula] gi|355524036|gb|AET04490.1|
Lsd1-like protein [Medicago truncatula]
Length = 123
Score = 101 bits (252), Expect = 9e-20
Identities = 52/82 (63%), Positives = 60/82 (73%), Gaps = 2/82 (2%)
Frame = +1
Query: 1 GNCRTTLMYPYGASSVKCAICHYITNVGMPNMRIPAP-EAPRPNETAPIRPSTSHS-SRV 174
GNCRTTLMYPYGA SVKCA+CHYITN+ M N R+P P P + + PSTS S +
Sbjct: 32 GNCRTTLMYPYGAPSVKCAVCHYITNINMSNGRLPIPGHRPHGTTDSGMLPSTSTSMPQS 91
Query: 175 PNTTVVVENPMTVDESGKLVSN 240
+ TVVVENPM+VD SGKLVSN
Sbjct: 92 QSQTVVVENPMSVDSSGKLVSN 113
>ref|XP_003630013.1| Lsd1-like protein [Medicago truncatula] gi|355524035|gb|AET04489.1|
Lsd1-like protein [Medicago truncatula]
Length = 223
Score = 101 bits (252), Expect = 9e-20
Identities = 52/82 (63%), Positives = 60/82 (73%), Gaps = 2/82 (2%)
Frame = +1
Query: 1 GNCRTTLMYPYGASSVKCAICHYITNVGMPNMRIPAP-EAPRPNETAPIRPSTSHS-SRV 174
GNCRTTLMYPYGA SVKCA+CHYITN+ M N R+P P P + + PSTS S +
Sbjct: 132 GNCRTTLMYPYGAPSVKCAVCHYITNINMSNGRLPIPGHRPHGTTDSGMLPSTSTSMPQS 191
Query: 175 PNTTVVVENPMTVDESGKLVSN 240
+ TVVVENPM+VD SGKLVSN
Sbjct: 192 QSQTVVVENPMSVDSSGKLVSN 213
>ref|XP_003630012.1| Lsd1-like protein [Medicago truncatula] gi|355524034|gb|AET04488.1|
Lsd1-like protein [Medicago truncatula]
Length = 211
Score = 101 bits (252), Expect = 9e-20
Identities = 52/82 (63%), Positives = 60/82 (73%), Gaps = 2/82 (2%)
Frame = +1
Query: 1 GNCRTTLMYPYGASSVKCAICHYITNVGMPNMRIPAP-EAPRPNETAPIRPSTSHS-SRV 174
GNCRTTLMYPYGA SVKCA+CHYITN+ M N R+P P P + + PSTS S +
Sbjct: 120 GNCRTTLMYPYGAPSVKCAVCHYITNINMSNGRLPIPGHRPHGTTDSGMLPSTSTSMPQS 179
Query: 175 PNTTVVVENPMTVDESGKLVSN 240
+ TVVVENPM+VD SGKLVSN
Sbjct: 180 QSQTVVVENPMSVDSSGKLVSN 201
>gb|ADK63407.1| zinc finger protein [Brassica rapa]
Length = 191
Score = 101 bits (252), Expect = 9e-20
Identities = 55/84 (65%), Positives = 63/84 (75%), Gaps = 4/84 (4%)
Frame = +1
Query: 1 GNCRTTLMYPYGASSVKCAICHYITNVGMPNMRIPAPEAPRPNETAP--IRPSTSHSSRV 174
GNCRTTLMYPYGASSVKCA+C ++TNV M N R+P + RPN TA PSTS S
Sbjct: 99 GNCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPL-ASNRPNGTASPGTMPSTSTQSTP 157
Query: 175 PN--TTVVVENPMTVDESGKLVSN 240
P+ TVVVENPM+V+ESGKLVSN
Sbjct: 158 PSQTQTVVVENPMSVNESGKLVSN 181