BLASTX nr result

ID: Zingiber23_contig00015998 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00015998
         (429 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004968861.1| PREDICTED: probable RNA-dependent RNA polyme...    89   6e-16
ref|XP_006290518.1| hypothetical protein CARUB_v10016597mg [Caps...    80   2e-13
sp|Q8LHH9.1|SHL2_ORYSJ RecName: Full=Probable RNA-dependent RNA ...    80   2e-13
gb|EEE54718.1| hypothetical protein OsJ_02054 [Oryza sativa Japo...    80   2e-13
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li...    80   4e-13
ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis ...    79   5e-13
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...    79   5e-13
gb|AAF74208.1|AF268093_1 RNA-dependent RNA polymerase [Arabidops...    78   1e-12
ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis tha...    78   1e-12
ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [S...    78   1e-12
ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-li...    77   3e-12
ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis...    77   3e-12
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...    77   3e-12
gb|AGU69384.1| RNA-dependendent RNA polymerase 6-like protein [L...    76   4e-12
ref|XP_003561343.1| PREDICTED: probable RNA-dependent RNA polyme...    76   4e-12
ref|XP_006404133.1| hypothetical protein EUTSA_v10010107mg [Eutr...    75   9e-12
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...    75   9e-12
dbj|BAJ34538.1| unnamed protein product [Thellungiella halophila]      75   9e-12
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...    75   9e-12
gb|ESW09024.1| hypothetical protein PHAVU_009G093700g [Phaseolus...    74   2e-11

>ref|XP_004968861.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like [Setaria
           italica]
          Length = 1211

 Score = 89.0 bits (219), Expect = 6e-16
 Identities = 43/87 (49%), Positives = 54/87 (62%), Gaps = 4/87 (4%)
 Frame = -2

Query: 254 GILDAMDLPPTHKEQDNLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPP 75
           G L     PP      +L ++QV  GGFDA VTA+ LADFLE EVG +WRCRVK+SWTPP
Sbjct: 2   GSLRGAAAPPPAPRAGDLVITQVSLGGFDATVTARDLADFLESEVGQVWRCRVKTSWTPP 61

Query: 74  DSFPVYHV----PVGGEASWKEDYERV 6
           D++P + +    P  G A     Y+RV
Sbjct: 62  DAYPDFLLPAVTPAAGAAGQPPQYDRV 88


>ref|XP_006290518.1| hypothetical protein CARUB_v10016597mg [Capsella rubella]
           gi|482559225|gb|EOA23416.1| hypothetical protein
           CARUB_v10016597mg [Capsella rubella]
          Length = 1197

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 34/67 (50%), Positives = 47/67 (70%)
 Frame = -2

Query: 206 NLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPVGGEASW 27
           N  V+QV  GGF  + TAKQL D+LEDEVG++WRCR+K+SWTPP S+P + +        
Sbjct: 9   NSVVTQVSIGGFGESTTAKQLTDYLEDEVGLVWRCRLKNSWTPPGSYPNFEIADTSNIPR 68

Query: 26  KEDYERV 6
            +DY++V
Sbjct: 69  IDDYKKV 75


>sp|Q8LHH9.1|SHL2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase SHL2; AltName:
           Full=Protein SHOOTLESS 2 gi|21328146|dbj|BAC00725.1|
           putative RNA-dependent RNA polymerase [Oryza sativa
           Japonica Group] gi|157279691|dbj|BAF80151.1| SHOOTLESS2
           [Oryza sativa Japonica Group]
          Length = 1218

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 34/53 (64%), Positives = 42/53 (79%)
 Frame = -2

Query: 206 NLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVP 48
           +L  +QV  GGFDA V A  LADFLE EVG++WRCRVK+SWTPPDS+P + +P
Sbjct: 26  DLVTTQVSLGGFDAGVAAGDLADFLEHEVGLVWRCRVKTSWTPPDSYPDFALP 78


>gb|EEE54718.1| hypothetical protein OsJ_02054 [Oryza sativa Japonica Group]
          Length = 1571

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 34/53 (64%), Positives = 42/53 (79%)
 Frame = -2

Query: 206 NLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVP 48
           +L  +QV  GGFDA V A  LADFLE EVG++WRCRVK+SWTPPDS+P + +P
Sbjct: 26  DLVTTQVSLGGFDAGVAAGDLADFLEHEVGLVWRCRVKTSWTPPDSYPDFALP 78


>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca
           subsp. vesca]
          Length = 1197

 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 31/71 (43%), Positives = 52/71 (73%)
 Frame = -2

Query: 218 KEQDNLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPVGG 39
           + +++  V+QV FGGF ++VTAK+L  +LEDE+G+++RCR+K+SWTPP+S P + +    
Sbjct: 5   ERENDTVVTQVSFGGFGSHVTAKELVSYLEDEIGLVFRCRLKTSWTPPESVPNFEISDAA 64

Query: 38  EASWKEDYERV 6
           +    +DY +V
Sbjct: 65  DIETTDDYRKV 75


>ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
           gi|297323519|gb|EFH53940.1| RNA-dependent RNA polymerase
           6 [Arabidopsis lyrata subsp. lyrata]
          Length = 1197

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 33/67 (49%), Positives = 47/67 (70%)
 Frame = -2

Query: 206 NLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPVGGEASW 27
           N  V+QV  GGF  + TAKQL D+LEDE+G++WRCR+K+SWTPP S+P + +        
Sbjct: 9   NSVVTQVSIGGFGESTTAKQLTDYLEDELGLVWRCRLKTSWTPPGSYPNFEIADTSSIPK 68

Query: 26  KEDYERV 6
            +DY++V
Sbjct: 69  FDDYKKV 75


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
           gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
           protein [Populus trichocarpa]
          Length = 1198

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 33/64 (51%), Positives = 48/64 (75%)
 Frame = -2

Query: 197 VSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPVGGEASWKED 18
           V+QV  GGFD +VTAK L ++LE E+G++WRCR+K+SWTPP+S+P + +    + +  ED
Sbjct: 12  VTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEITDITKITRTED 71

Query: 17  YERV 6
           Y RV
Sbjct: 72  YRRV 75


>gb|AAF74208.1|AF268093_1 RNA-dependent RNA polymerase [Arabidopsis thaliana]
          Length = 1196

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 33/64 (51%), Positives = 46/64 (71%)
 Frame = -2

Query: 197 VSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPVGGEASWKED 18
           V+QV  GGF  + TAKQL D+LEDEVGI+WRCR+K+SWTPP S+P + +         ++
Sbjct: 12  VTQVSIGGFGESTTAKQLTDYLEDEVGIVWRCRLKTSWTPPGSYPNFEIADTSNIPSIDE 71

Query: 17  YERV 6
           Y++V
Sbjct: 72  YKKV 75


>ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana]
           gi|75337188|sp|Q9SG02.1|RDR6_ARATH RecName:
           Full=RNA-dependent RNA polymerase 6; Short=AtRDRP6;
           AltName: Full=Protein SILENCING DEFECTIVE 1; AltName:
           Full=Protein SUPPRESSOR OF GENE SILENCING 2; AltName:
           Full=RNA-directed RNA polymerase 6
           gi|12324444|gb|AAG52184.1|AC012329_11 putative
           RNA-directed RNA polymerase; 73997-69985 [Arabidopsis
           thaliana] gi|6899955|emb|CAB71285.1| RNA-directed RNA
           polymerase-like protein [Arabidopsis thaliana]
           gi|8164028|gb|AAF73959.1| SGS2 [Arabidopsis thaliana]
           gi|332645029|gb|AEE78550.1| RNA-dependent RNA polymerase
           6 [Arabidopsis thaliana]
          Length = 1196

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 33/64 (51%), Positives = 46/64 (71%)
 Frame = -2

Query: 197 VSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPVGGEASWKED 18
           V+QV  GGF  + TAKQL D+LEDEVGI+WRCR+K+SWTPP S+P + +         ++
Sbjct: 12  VTQVSIGGFGESTTAKQLTDYLEDEVGIVWRCRLKTSWTPPGSYPNFEIADTSNIPSIDE 71

Query: 17  YERV 6
           Y++V
Sbjct: 72  YKKV 75


>ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor]
           gi|241929916|gb|EES03061.1| hypothetical protein
           SORBIDRAFT_03g022880 [Sorghum bicolor]
          Length = 1207

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
 Frame = -2

Query: 254 GILDAMDLPPTHKEQDNLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPP 75
           G L     P       +L  +QV  GGFDA V A  LADFLE + G++WRCRVK+SWTPP
Sbjct: 2   GSLRGAAAPSPAPRAGDLVTTQVSLGGFDATVKALDLADFLELKAGLVWRCRVKTSWTPP 61

Query: 74  DSFPVYHVP-VGGEASWKEDYERV 6
           D++P + +P V   A+    Y+RV
Sbjct: 62  DAYPDFLLPTVTSAAAQPPQYDRV 85


>ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
          Length = 1197

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 32/72 (44%), Positives = 51/72 (70%)
 Frame = -2

Query: 218 KEQDNLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPVGG 39
           +E + + V+QV FGGFD++V A+ L  +LE E+G++ RCR+K+SWTPP+S+P + V    
Sbjct: 4   EEGEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVSNVA 63

Query: 38  EASWKEDYERVV 3
                +DY++VV
Sbjct: 64  NVIKSDDYKKVV 75


>ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis sativus]
           gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase
           6 [Cucumis sativus]
          Length = 1197

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 32/72 (44%), Positives = 51/72 (70%)
 Frame = -2

Query: 218 KEQDNLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPVGG 39
           +E + + V+QV FGGFD++V A+ L  +LE E+G++ RCR+K+SWTPP+S+P + V    
Sbjct: 4   EEGEKIVVTQVSFGGFDSDVKARDLMSYLESEIGLVDRCRLKTSWTPPESYPDFEVSNVA 63

Query: 38  EASWKEDYERVV 3
                +DY++VV
Sbjct: 64  NVIKSDDYKKVV 75


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
           gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
           protein [Populus trichocarpa]
          Length = 1200

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 32/65 (49%), Positives = 47/65 (72%)
 Frame = -2

Query: 197 VSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPVGGEASWKED 18
           V+QV  GGFD +VTAK L ++L+  +G++WRCR+K+SWTPP+S+P + +    +    ED
Sbjct: 12  VTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEITDITKIERTED 71

Query: 17  YERVV 3
           Y RVV
Sbjct: 72  YRRVV 76


>gb|AGU69384.1| RNA-dependendent RNA polymerase 6-like protein [Lotus japonicus]
          Length = 1201

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 35/78 (44%), Positives = 53/78 (67%)
 Frame = -2

Query: 239 MDLPPTHKEQDNLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPV 60
           MDL  + KE     V+QV  GGFD+ V A  LA+FLE+ +G+++RCR+K+SWTPP+S+P 
Sbjct: 1   MDLGGSEKES---VVTQVSIGGFDSEVKAHDLAEFLENRIGLVYRCRLKTSWTPPESYPE 57

Query: 59  YHVPVGGEASWKEDYERV 6
           ++V         +DY++V
Sbjct: 58  FNVADTALVKRTDDYKKV 75


>ref|XP_003561343.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like
           [Brachypodium distachyon]
          Length = 1208

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 32/48 (66%), Positives = 39/48 (81%)
 Frame = -2

Query: 206 NLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFP 63
           +L  +QV  GGF A V+A +LADFLE E G++WRCRVK+SWTPPDSFP
Sbjct: 15  DLVTTQVSLGGFGAGVSASELADFLEYEAGLVWRCRVKTSWTPPDSFP 62


>ref|XP_006404133.1| hypothetical protein EUTSA_v10010107mg [Eutrema salsugineum]
           gi|557105252|gb|ESQ45586.1| hypothetical protein
           EUTSA_v10010107mg [Eutrema salsugineum]
          Length = 927

 Score = 75.1 bits (183), Expect = 9e-12
 Identities = 34/67 (50%), Positives = 44/67 (65%)
 Frame = -2

Query: 206 NLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPVGGEASW 27
           N  V+QV  GGF  + TAK+L D+LE EVG IWRCR+K+SWTPP S+P + +        
Sbjct: 25  NSVVTQVSIGGFGQSTTAKELTDYLEHEVGHIWRCRLKNSWTPPGSYPNFEIADTSNIRN 84

Query: 26  KEDYERV 6
             DY+RV
Sbjct: 85  FNDYKRV 91


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score = 75.1 bits (183), Expect = 9e-12
 Identities = 35/70 (50%), Positives = 49/70 (70%)
 Frame = -2

Query: 212 QDNLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPVGGEA 33
           + +L V+Q+  GGFD +V AK L+++LE++VG +WRCR+K S TPPDS+P Y V      
Sbjct: 7   EKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDVDAARVH 66

Query: 32  SWKEDYERVV 3
             K DYE+VV
Sbjct: 67  RMK-DYEKVV 75


>dbj|BAJ34538.1| unnamed protein product [Thellungiella halophila]
          Length = 998

 Score = 75.1 bits (183), Expect = 9e-12
 Identities = 34/67 (50%), Positives = 44/67 (65%)
 Frame = -2

Query: 206 NLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPVGGEASW 27
           N  V+QV  GGF  + TAK+L D+LE EVG IWRCR+K+SWTPP S+P + +        
Sbjct: 9   NSVVTQVSIGGFGQSTTAKELTDYLEHEVGHIWRCRLKNSWTPPGSYPNFEIADTSNIRN 68

Query: 26  KEDYERV 6
             DY+RV
Sbjct: 69  FNDYKRV 75


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
           gi|223545464|gb|EEF46969.1| RNA-dependent RNA
           polymerase, putative [Ricinus communis]
          Length = 1203

 Score = 75.1 bits (183), Expect = 9e-12
 Identities = 31/73 (42%), Positives = 48/73 (65%)
 Frame = -2

Query: 224 THKEQDNLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPVYHVPV 45
           T + +    V+QV FGGFD +VTA+ L  +L++E+G +WRCR+K+SWTPP+S+P + +  
Sbjct: 3   TKRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEITD 62

Query: 44  GGEASWKEDYERV 6
                  + Y RV
Sbjct: 63  TAVIQRVDAYRRV 75


>gb|ESW09024.1| hypothetical protein PHAVU_009G093700g [Phaseolus vulgaris]
          Length = 1204

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 30/78 (38%), Positives = 54/78 (69%)
 Frame = -2

Query: 239 MDLPPTHKEQDNLTVSQVGFGGFDANVTAKQLADFLEDEVGIIWRCRVKSSWTPPDSFPV 60
           MDL  + K+     V+Q+  GGF + V A +L ++LED++G+++RCR+K+SWTPP+S+P 
Sbjct: 1   MDLEASEKDS---VVTQISIGGFGSEVKASELVNYLEDKIGLVYRCRLKTSWTPPESYPE 57

Query: 59  YHVPVGGEASWKEDYERV 6
           +++    +    +DY++V
Sbjct: 58  FNITDTAKIKGTDDYKKV 75


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