BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00014635
         (2014 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267079.1| PREDICTED: CRS2-associated factor 2, chlorop...   620   e-175
gb|EXB82569.1| CRS2-associated factor 2 [Morus notabilis]             610   e-172
ref|XP_003631275.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associa...   608   e-171
gb|EOY00533.1| RNA-binding CRS1 / YhbY (CRM) domain-containing p...   602   e-169
ref|XP_004155360.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associa...   601   e-169
ref|XP_004135256.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associa...   600   e-168
ref|XP_006840310.1| hypothetical protein AMTR_s00045p00074390 [A...   599   e-168
gb|ADN33825.1| RNA splicing factor [Cucumis melo subsp. melo]         592   e-166
ref|XP_003530640.1| PREDICTED: CRS2-associated factor 2, chlorop...   590   e-166
ref|XP_006438328.1| hypothetical protein CICLE_v10031138mg [Citr...   589   e-165
ref|XP_006483899.1| PREDICTED: CRS2-associated factor 2, chlorop...   588   e-165
ref|XP_006416086.1| hypothetical protein EUTSA_v10007246mg [Eutr...   587   e-165
gb|EMJ28681.1| hypothetical protein PRUPE_ppa003604mg [Prunus pe...   583   e-164
gb|ESW25745.1| hypothetical protein PHAVU_003G062100g [Phaseolus...   583   e-164
ref|XP_002315689.2| hypothetical protein POPTR_0010s05230g [Popu...   582   e-163
ref|NP_173754.2| CRS2-associated factor 2 [Arabidopsis thaliana]...   582   e-163
ref|XP_002893285.1| hypothetical protein ARALYDRAFT_335585 [Arab...   580   e-162
ref|XP_006307133.1| hypothetical protein CARUB_v10008723mg [Caps...   579   e-162
ref|NP_001105669.1| CRS2-associated factor 2, chloroplastic prec...   578   e-162
ref|XP_004298480.1| PREDICTED: CRS2-associated factor 2, chlorop...   578   e-162

>ref|XP_002267079.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Vitis vinifera]
            gi|297739063|emb|CBI28552.3| unnamed protein product
            [Vitis vinifera]
          Length = 561

 Score =  620 bits (1598), Expect = e-175
 Identities = 322/534 (60%), Positives = 383/534 (71%), Gaps = 2/534 (0%)
 Frame = +2

Query: 233  ALKATHHRSRYYKPVSEGVLTGDEIGRSVVVGPSGISYHLPGAPFEFQFSYSETPKVKPL 412
            A K  HHRS+YYKPVS+GV+  D   RSVV+G SG+SY LPGAPFEFQFSYSETPK KPL
Sbjct: 61   AFKTVHHRSKYYKPVSDGVIASDG-DRSVVIGESGVSYLLPGAPFEFQFSYSETPKAKPL 119

Query: 413  AIREPAFLPFAPPTMNRPWTGKAPLLSKKEKERKKNIRLFEPLGHPXXXXXXXXXXXXXX 592
            AIREPAFLPFAPPTM RPWTGKAPL     K+ KK I LF+    P              
Sbjct: 120  AIREPAFLPFAPPTMPRPWTGKAPL-----KKSKKKIPLFDSFNPPPPGTKGVKR----- 169

Query: 593  XVMEMAGTPAKLGWYPKDGRSREEILGIPLKKWEIHALIKPILSHNRQVNIGRDGLTHNM 772
              +EM G P  LG +P +GR+REEILG PL K EI  L+KP LSHNRQVN+GRDGLTHNM
Sbjct: 170  --VEMPG-PFPLGKFPVEGRTREEILGEPLSKAEIRMLVKPYLSHNRQVNLGRDGLTHNM 226

Query: 773  LELIHSHWRRQQVCKVRCRGVPTVDMNNICLHLEEKTRGKIIHRIGGVLYLFRGRNYDFR 952
            LELIHSHW+RQ+VCKVRC+GVPT+DM+N+C HLEEKT GKIIHR+GGV+YLFRGRNY++R
Sbjct: 227  LELIHSHWKRQRVCKVRCKGVPTIDMDNVCHHLEEKTGGKIIHRVGGVVYLFRGRNYNYR 286

Query: 953  TRPKYPIMLWKPATPIYPKLIQEAPEGLTKLEADLLREKGKKLLPICKLARNGIYIKLVK 1132
            TRP+YP+MLWKPA P+YPKLIQEAPEGLTK EAD LR KGK L+PIC+L +NG+YI LVK
Sbjct: 287  TRPQYPVMLWKPAAPVYPKLIQEAPEGLTKFEADELRMKGKNLIPICRLVKNGVYISLVK 346

Query: 1133 DVRDAFEGSELVKVNCQGMEASDYKRLGAKLKELVPCVLLSFEEEQILMWRGREWKSRYQ 1312
            DVRDAFEGS LVK++C+GM ASDYK++GAKLKELVPCVLLSF++EQIL WRG  WKS YQ
Sbjct: 347  DVRDAFEGSPLVKIDCKGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWRGHGWKSMYQ 406

Query: 1313 G-PLRLNTKIQKIEDG-ESSNLNESGQSSASTSDTAPGIEIISPKMFSLWKRAVESSQAL 1486
            G P  L   +  +  G E S + +S      T   +      SPKM SLWK A+ESS+AL
Sbjct: 407  GAPSFLIPVVADVASGLEGSGIPKSNHHRLDTKAVS-----ASPKMMSLWKSAIESSKAL 461

Query: 1487 LLDDIDLTPDSLLEKIEHFEGLSQAISHSYDALILPTSKDPEGSKYSSEGRFRLEASDVS 1666
            LLD+  L PD+LL+ +E FEG+SQA  HSY AL++ +     G+K   EG     + D S
Sbjct: 462  LLDETGLGPDALLKVVEEFEGISQATEHSYPALVMSSEDGTGGTKAEYEG---YNSEDYS 518

Query: 1667 YDEFGRENKNGEXXXXXXXXXXXXXXXXXXXEIEHSVPFGSLPVDSIAKRLGED 1828
             DE   ++ + E                   E+E  VP GSLPVD +AK+LGE+
Sbjct: 519  EDEMYNDDDDDE-----------YLVNESLEEMESPVPLGSLPVDLLAKQLGEE 561


>gb|EXB82569.1| CRS2-associated factor 2 [Morus notabilis]
          Length = 571

 Score =  610 bits (1572), Expect = e-172
 Identities = 319/538 (59%), Positives = 386/538 (71%), Gaps = 6/538 (1%)
 Frame = +2

Query: 233  ALKATHHRSRYYKPVSEGVLTGDEIGRSVVVGPSGISYHLPGAPFEFQFSYSETPKVKPL 412
            ALK+ H RS YYKPV +GV+  D+ GRSVV+G SG+SY LPGAPFEFQ+SYSETPKVKPL
Sbjct: 69   ALKSVHRRSNYYKPVRDGVIASDD-GRSVVIGDSGVSYLLPGAPFEFQYSYSETPKVKPL 127

Query: 413  AIREPAFLPFAPPTMNRPWTGKAPLLSKKEKERKKNIRLFEPLGHPXXXXXXXXXXXXXX 592
            AIREPAFLPFAPPTM RPWTGKAPL S KEK+R + I L +    P              
Sbjct: 128  AIREPAFLPFAPPTMPRPWTGKAPLKSAKEKKRNRKIPLLDSFNPPPRGTEGVKQ----- 182

Query: 593  XVMEMAGTPAKLGWYPKDGRSREEILGIPLKKWEIHALIKPILSHNRQVNIGRDGLTHNM 772
              MEM G P   G YPK  +++EEILG PLKKWEI  LIKP LS NRQVN+GRDGLTHNM
Sbjct: 183  --MEMPG-PFPFGKYPKVRKTKEEILGEPLKKWEIKMLIKPHLSSNRQVNLGRDGLTHNM 239

Query: 773  LELIHSHWRRQQVCKVRCRGVPTVDMNNICLHLEEKTRGKIIHRIGGVLYLFRGRNYDFR 952
            LELIHSHW+R  VCK+RC+GVPTVDM+N+C H+E KT GKII+R GG +YLFRGRNY++ 
Sbjct: 240  LELIHSHWKRTPVCKIRCKGVPTVDMDNVCQHIENKTGGKIINRAGGAVYLFRGRNYNYA 299

Query: 953  TRPKYPIMLWKPATPIYPKLIQEAPEGLTKLEADLLREKGKKLLPICKLARNGIYIKLVK 1132
             RP+YP+MLWKPA P+YPKLIQEAP GLTK EA+ LR KGKKLLPICKLA+NG+YI LVK
Sbjct: 300  NRPQYPVMLWKPAAPVYPKLIQEAPGGLTKDEANELRMKGKKLLPICKLAKNGVYISLVK 359

Query: 1133 DVRDAFEGSELVKVNCQGMEASDYKRLGAKLKELVPCVLLSFEEEQILMWRGREWKSRYQ 1312
            DVR AFEGS LVK++C+GM ASDYK+LGAKLKELVPCVLLSF++EQILMWRG +WKS Y+
Sbjct: 360  DVRHAFEGSPLVKIDCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGSDWKSMYR 419

Query: 1313 GPLRLNTKIQKI--EDGESSNLNESGQSSASTSDTAPGIEIISPKMFSLWKRAVESSQAL 1486
                 +  I  I   D  +S+L+ SG+ +  + D        SPKM SLWKRA+ES++A+
Sbjct: 420  -----DVSIPSILGNDVVTSDLHRSGKDNDDSGDPDTQTVRTSPKMLSLWKRALESNKAI 474

Query: 1487 LLDDIDLTPDSLLEKIEHFEGLSQAISHSYDALILP----TSKDPEGSKYSSEGRFRLEA 1654
            LLD+I+L PD+LL K+E FEG+SQA  HSY ALI+     TS   E S+Y S+     + 
Sbjct: 475  LLDEINLGPDALLMKVEEFEGISQATEHSYPALIVSGEDGTSSSMEESEYLSQSD---DD 531

Query: 1655 SDVSYDEFGRENKNGEXXXXXXXXXXXXXXXXXXXEIEHSVPFGSLPVDSIAKRLGED 1828
            +D   D++  EN +                     + + S+P GSLPVD IAK+  +D
Sbjct: 532  NDDFIDDYDEENDD------------------VYYDSDSSLPLGSLPVDVIAKKFSQD 571


>ref|XP_003631275.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
            chloroplastic-like [Vitis vinifera]
          Length = 560

 Score =  608 bits (1569), Expect = e-171
 Identities = 318/534 (59%), Positives = 379/534 (70%), Gaps = 2/534 (0%)
 Frame = +2

Query: 233  ALKATHHRSRYYKPVSEGVLTGDEIGRSVVVGPSGISYHLPGAPFEFQFSYSETPKVKPL 412
            A K  HHRS+YYKPVS+GV+  D   RSVV+G SG+SY L GAPFEFQFSYSETPK KPL
Sbjct: 61   AFKTVHHRSKYYKPVSDGVIASDG-DRSVVIGESGVSYLLAGAPFEFQFSYSETPKAKPL 119

Query: 413  AIREPAFLPFAPPTMNRPWTGKAPLLSKKEKERKKNIRLFEPLGHPXXXXXXXXXXXXXX 592
            AIREPAFLPFAPPTM RPWTGKAPL     K+ KK I LF+    P              
Sbjct: 120  AIREPAFLPFAPPTMPRPWTGKAPL-----KKSKKKIPLFDSFNPPPPGTKGVKR----- 169

Query: 593  XVMEMAGTPAKLGWYPKDGRSREEILGIPLKKWEIHALIKPILSHNRQVNIGRDGLTHNM 772
              +EM G P  LG +P +GR+REEILG PL K EI  L+KP LSHNRQVN+GRDGLTHNM
Sbjct: 170  --VEMPG-PFPLGKFPVEGRTREEILGEPLSKAEIRMLVKPYLSHNRQVNLGRDGLTHNM 226

Query: 773  LELIHSHWRRQQVCKVRCRGVPTVDMNNICLHLEEKTRGKIIHRIGGVLYLFRGRNYDFR 952
            LELIHSHW+RQ+VCKV C+GVPT+DM+N+C HLEEKT GKIIHR+GGV+YLFRGRNY++R
Sbjct: 227  LELIHSHWKRQRVCKVWCKGVPTIDMDNVCHHLEEKTGGKIIHRVGGVVYLFRGRNYNYR 286

Query: 953  TRPKYPIMLWKPATPIYPKLIQEAPEGLTKLEADLLREKGKKLLPICKLARNGIYIKLVK 1132
            TRP+YP+MLWKPA P+YPKLIQEAPEGLTK EAD LR KG  L+PIC+L +NG+YI LVK
Sbjct: 287  TRPQYPVMLWKPAAPVYPKLIQEAPEGLTKFEADELRMKGXNLIPICRLVKNGVYISLVK 346

Query: 1133 DVRDAFEGSELVKVNCQGMEASDYKRLGAKLKELVPCVLLSFEEEQILMWRGREWKSRYQ 1312
            DVRDAFEGS LVK++C+GM ASDYK++GAKLKE VPCVLLSF++EQIL WRG  WKS YQ
Sbjct: 347  DVRDAFEGSPLVKIDCKGMHASDYKKIGAKLKESVPCVLLSFDDEQILTWRGHGWKSMYQ 406

Query: 1313 G-PLRLNTKIQKIEDG-ESSNLNESGQSSASTSDTAPGIEIISPKMFSLWKRAVESSQAL 1486
            G P  L   +  +  G E S + +S      T   +      SPKM SLWK A+ESS+AL
Sbjct: 407  GAPSFLIPVVADVASGLEGSGVPKSNHHRLDTKAVS-----ASPKMMSLWKSAIESSKAL 461

Query: 1487 LLDDIDLTPDSLLEKIEHFEGLSQAISHSYDALILPTSKDPEGSKYSSEGRFRLEASDVS 1666
            LLD+I L PD+LL+ +E FEG+SQA  HSY AL++ +     G+K   EG     + D S
Sbjct: 462  LLDEIGLGPDALLKVVEEFEGISQATEHSYPALVMSSEDGTGGTKAEHEG---YNSEDYS 518

Query: 1667 YDEFGRENKNGEXXXXXXXXXXXXXXXXXXXEIEHSVPFGSLPVDSIAKRLGED 1828
             DE   ++ +                     E+E  VP GSLPVD +AK+LGE+
Sbjct: 519  EDEMYNDDDD------------EYLVNESLEEMESPVPLGSLPVDLLAKQLGEE 560


>gb|EOY00533.1| RNA-binding CRS1 / YhbY (CRM) domain-containing protein [Theobroma
            cacao]
          Length = 562

 Score =  602 bits (1552), Expect = e-169
 Identities = 311/531 (58%), Positives = 388/531 (73%), Gaps = 2/531 (0%)
 Frame = +2

Query: 233  ALKATHHRSRYYKPVSEGVLTGDEIGRSVVVGPSGISYHLPGAPFEFQFSYSETPKVKPL 412
            A+   H RS Y KPV +GV++ D   R VV+G +G+SY LPGAPFEFQFSYSETPK +P+
Sbjct: 59   AISLPHRRSNYRKPVKKGVISSDG-DRCVVIGENGVSYQLPGAPFEFQFSYSETPKAEPI 117

Query: 413  AIREPAFLPFAPPTMNRPWTGKAPLLSKKEKERKKNIRLFEPLGHPXXXXXXXXXXXXXX 592
            AIREPAFLPFAPPTM RPWTGKAPL+  K+K     I LF+    P              
Sbjct: 118  AIREPAFLPFAPPTMPRPWTGKAPLIKSKKK-----IPLFDSFNPPPPDKKGVKY----- 167

Query: 593  XVMEMAGTPAKLGWYPKDGRSREEILGIPLKKWEIHALIKPILSHNRQVNIGRDGLTHNM 772
              +EM G P   G YPK+G++REEILG PLKKWEI  L+KP+LS NRQVN+GRDGLTHNM
Sbjct: 168  --VEMPG-PFPYGKYPKEGKTREEILGEPLKKWEIKMLVKPLLSDNRQVNLGRDGLTHNM 224

Query: 773  LELIHSHWRRQQVCKVRCRGVPTVDMNNICLHLEEKTRGKIIHRIGGVLYLFRGRNYDFR 952
            L+LIH+HW+R++VCK++C+GVPTVDM+N+C H+EEKT GKIIHR+GGV+YLFRGRNY++R
Sbjct: 225  LDLIHTHWKRRRVCKIKCKGVPTVDMDNVCRHIEEKTGGKIIHRVGGVVYLFRGRNYNYR 284

Query: 953  TRPKYPIMLWKPATPIYPKLIQEAPEGLTKLEADLLREKGKKLLPICKLARNGIYIKLVK 1132
            TRP+YP+MLWKPA P+YPKLIQEAPEGLTK E D+LR+KGK LLPICKLA+NG+Y  LVK
Sbjct: 285  TRPQYPVMLWKPAAPVYPKLIQEAPEGLTKAETDVLRKKGKSLLPICKLAKNGVYASLVK 344

Query: 1133 DVRDAFEGSELVKVNCQGMEASDYKRLGAKLKELVPCVLLSFEEEQILMWRGREWKSRYQ 1312
            DVRDAFEGS LVK++C+GM ASDYK++GAKLKEL PCVLLSF++EQILMWRG++WKS Y 
Sbjct: 345  DVRDAFEGSPLVKIDCKGMHASDYKKIGAKLKELAPCVLLSFDDEQILMWRGQDWKSMY- 403

Query: 1313 GPLRLNTKIQKIEDGESSNLNESGQSS--ASTSDTAPGIEIISPKMFSLWKRAVESSQAL 1486
             P   +T +   + G SS L++S +S+    T D   GI   SPKM +LW  A+ES++AL
Sbjct: 404  -PEAPSTLLPS-KSGISSGLDDSAKSADDCHTPDIKNGIS--SPKMMTLWNNAIESNKAL 459

Query: 1487 LLDDIDLTPDSLLEKIEHFEGLSQAISHSYDALILPTSKDPEGSKYSSEGRFRLEASDVS 1666
            LLD+I L PD+LLEK+E FEG+S    HS +AL+L +S+D  GS  +       EA   S
Sbjct: 460  LLDEIALGPDALLEKVEEFEGISLVTEHSCEALVL-SSEDGSGSSMAES-----EAGSYS 513

Query: 1667 YDEFGRENKNGEXXXXXXXXXXXXXXXXXXXEIEHSVPFGSLPVDSIAKRL 1819
             ++FG EN+                      E++ S+P GSLPVD IA+RL
Sbjct: 514  -EDFGGENE------IYSDDDIINDEYYDVEEVDSSIPLGSLPVDKIAERL 557


>ref|XP_004155360.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
            chloroplastic-like [Cucumis sativus]
          Length = 603

 Score =  601 bits (1550), Expect = e-169
 Identities = 314/532 (59%), Positives = 378/532 (71%)
 Frame = +2

Query: 233  ALKATHHRSRYYKPVSEGVLTGDEIGRSVVVGPSGISYHLPGAPFEFQFSYSETPKVKPL 412
            ALK  HHRS+YYKPV +GV++ +   R+VV+G SG+SYHLPGAPFEFQ+SYSETPKVKP+
Sbjct: 107  ALKTFHHRSKYYKPVKDGVISSNG-ERAVVIGDSGVSYHLPGAPFEFQYSYSETPKVKPI 165

Query: 413  AIREPAFLPFAPPTMNRPWTGKAPLLSKKEKERKKNIRLFEPLGHPXXXXXXXXXXXXXX 592
            AIREPAFLPFAPPTM RPWTGKAPL     K  KK I LF+    P              
Sbjct: 166  AIREPAFLPFAPPTMPRPWTGKAPL-----KSSKKKIPLFDSFNPPPPGTKGVK------ 214

Query: 593  XVMEMAGTPAKLGWYPKDGRSREEILGIPLKKWEIHALIKPILSHNRQVNIGRDGLTHNM 772
             ++++ G P  LG +PK+G+SREEILG PLK WEI  L+KP LSHNRQVN+GRDGLTHNM
Sbjct: 215  -LVQLPG-PFPLGQHPKEGKSREEILGEPLKNWEIRMLVKPHLSHNRQVNLGRDGLTHNM 272

Query: 773  LELIHSHWRRQQVCKVRCRGVPTVDMNNICLHLEEKTRGKIIHRIGGVLYLFRGRNYDFR 952
            LELIHSHW+RQ+VCKVRC+GVPTVDM+NIC H+EEKT GKIIHR+GGVLYLFRGRNY++R
Sbjct: 273  LELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEKTGGKIIHRVGGVLYLFRGRNYNYR 332

Query: 953  TRPKYPIMLWKPATPIYPKLIQEAPEGLTKLEADLLREKGKKLLPICKLARNGIYIKLVK 1132
            TRP+YP+MLWKPA P+YPKLIQEAPEGLTK EA++LR KGK LLPICKLA+NG+YI LV 
Sbjct: 333  TRPQYPVMLWKPAAPVYPKLIQEAPEGLTKKEANVLRMKGKNLLPICKLAKNGVYISLVN 392

Query: 1133 DVRDAFEGSELVKVNCQGMEASDYKRLGAKLKELVPCVLLSFEEEQILMWRGREWKSRYQ 1312
            DVR AFEGS LVK++C GM  SDYK+LGAKLKELVPCVLLSF+ EQILMWRG++WKS   
Sbjct: 393  DVRHAFEGSILVKIDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMWRGKDWKSIIS 452

Query: 1313 GPLRLNTKIQKIEDGESSNLNESGQSSASTSDTAPGIEIISPKMFSLWKRAVESSQALLL 1492
                     +   +    +  ES ++S    D    I+  SPKM  LW+ A++S++ALLL
Sbjct: 453  DDCSAPLPSRASSNDSLGSPGESLENSDLLHDNHHTIK-TSPKMKLLWEHAIDSNKALLL 511

Query: 1493 DDIDLTPDSLLEKIEHFEGLSQAISHSYDALILPTSKDPEGSKYSSEGRFRLEASDVSYD 1672
            D+I L PD LLEK+E FE +SQA  HSY A I  +S+D      S + +   EA+  S D
Sbjct: 512  DEIGLAPDDLLEKVEEFERISQATEHSYPAFI-TSSEDVSSPDDSPKSQDHTEANYNSDD 570

Query: 1673 EFGRENKNGEXXXXXXXXXXXXXXXXXXXEIEHSVPFGSLPVDSIAKRLGED 1828
            + GRE                          +  VP GSLPVD IAK+L  +
Sbjct: 571  DVGREE-------------------DLFDNADPLVPLGSLPVDIIAKKLSSE 603


>ref|XP_004135256.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
            chloroplastic-like [Cucumis sativus]
          Length = 602

 Score =  600 bits (1546), Expect = e-168
 Identities = 316/538 (58%), Positives = 379/538 (70%), Gaps = 6/538 (1%)
 Frame = +2

Query: 233  ALKATHHRSRYYKPVSEGVLTGDEIGRSVVVGPSGISYHLPGAPFEFQFSYSETPKVKPL 412
            ALK  HHRS+YYKPV +GV++ +   R+VV+G SG+SYHLPGAPFEFQ+SYSETPKVKP+
Sbjct: 106  ALKTFHHRSKYYKPVKDGVISSNG-ERAVVIGDSGVSYHLPGAPFEFQYSYSETPKVKPI 164

Query: 413  AIREPAFLPFAPPTMNRPWTGKAPLLSKKEKERKKNIRLFEPLGHPXXXXXXXXXXXXXX 592
            AIREPAFLPFAPPTM RPWTGKAPL     K  KK I LF+    P              
Sbjct: 165  AIREPAFLPFAPPTMPRPWTGKAPL-----KSSKKKIPLFDSFNPPPPGTKGVK------ 213

Query: 593  XVMEMAGTPAKLGWYPKDGRSREEILGIPLKKWEIHALIKPILSHNRQVNIGRDGLTHNM 772
             ++++ G P  LG +PK+G+SREEILG PLK WEI  L+KP LSHNRQVN+GRDGLTHNM
Sbjct: 214  -LVQLPG-PFPLGQHPKEGKSREEILGEPLKNWEIRMLVKPHLSHNRQVNLGRDGLTHNM 271

Query: 773  LELIHSHWRRQQVCKVRCRGVPTVDMNNICLHLEEKTRGKIIHRIGGVLYLFRGRNYDFR 952
            LELIHSHW+RQ+VCKVRC+GVPTVDM+NIC H+EEKT GKIIHR+GGVLYLFRGRNY++R
Sbjct: 272  LELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEKTGGKIIHRVGGVLYLFRGRNYNYR 331

Query: 953  TRPKYPIMLWKPATPIYPKLIQEAPEGLTKLEADLLREKGKKLLPICKLARNGIYIKLVK 1132
            TRP+YP+MLWKPA P+YPKLIQEAPEGLTK EA++LR KGK LLPICKLA+NG+YI LV 
Sbjct: 332  TRPQYPVMLWKPAAPVYPKLIQEAPEGLTKKEANVLRMKGKNLLPICKLAKNGVYISLVN 391

Query: 1133 DVRDAFEGSELVKVNCQGMEASDYKRLGAKLKELVPCVLLSFEEEQILMWRGREWKSRYQ 1312
            DVR AFEGS LVK++C GM  SDYK+LGAKLKELVPCVLLSF+ EQILMWRG++WKS   
Sbjct: 392  DVRHAFEGSILVKIDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMWRGKDWKSIIS 451

Query: 1313 G------PLRLNTKIQKIEDGESSNLNESGQSSASTSDTAPGIEIISPKMFSLWKRAVES 1474
                   P R ++       GES   ++    +  T  T       SPKM  LW+ A++S
Sbjct: 452  DDRSAPLPSRASSNDSLGSPGESLENSDLLHGNHHTIKT-------SPKMKLLWEHAIDS 504

Query: 1475 SQALLLDDIDLTPDSLLEKIEHFEGLSQAISHSYDALILPTSKDPEGSKYSSEGRFRLEA 1654
            ++ALLLD+I L PD LLEK+E FE +SQA  HSY A I  +S+D      S + +   EA
Sbjct: 505  NKALLLDEIGLAPDDLLEKVEEFERISQATEHSYPAFI-TSSEDVSSPDDSPKSQDHTEA 563

Query: 1655 SDVSYDEFGRENKNGEXXXXXXXXXXXXXXXXXXXEIEHSVPFGSLPVDSIAKRLGED 1828
            +  S D+ GRE                          +  VP GSLPVD IAK+L  +
Sbjct: 564  NYNSDDDVGREE-------------------DLFDNADPLVPLGSLPVDIIAKKLSSE 602


>ref|XP_006840310.1| hypothetical protein AMTR_s00045p00074390 [Amborella trichopoda]
            gi|548842028|gb|ERN01985.1| hypothetical protein
            AMTR_s00045p00074390 [Amborella trichopoda]
          Length = 570

 Score =  599 bits (1544), Expect = e-168
 Identities = 317/550 (57%), Positives = 391/550 (71%), Gaps = 18/550 (3%)
 Frame = +2

Query: 233  ALKATHHRSRYYKPVSEGVLTGDEIGRSVVVGPSGISYHLPGAPFEFQFSYSETPKVKPL 412
            A +A H  + YYKPVS+GV++ +E GRSVV+G SG+SY +PGAPFEFQFSYSETPK KPL
Sbjct: 55   AFRAPHRGTNYYKPVSDGVISAEEDGRSVVIGESGVSYLIPGAPFEFQFSYSETPKGKPL 114

Query: 413  AIREPAFLPFAPPTMNRPWTGKAPLLSKKEKERKKNIRLFEPLGHPXXXXXXXXXXXXXX 592
            AIREPA LPFAPPTM RPWTGKAPL  KKEK + K    F+ L                 
Sbjct: 115  AIREPAHLPFAPPTMGRPWTGKAPLKKKKEKRKIKLFDSFDSL--------IAEEKNGEK 166

Query: 593  XVMEMAGTPAKLGWYPKDGRSREEILGIPLKKWEIHALIKPILSHNRQVNIGRDGLTHNM 772
             +M M   P ++G   ++ RSREEILG P+K+ E+ AL+KP LS+NRQVN+GRDGLTHNM
Sbjct: 167  KMMHML-RPFEIGESMREKRSREEILGSPVKRGEVRALVKPCLSNNRQVNLGRDGLTHNM 225

Query: 773  LELIHSHWRRQQVCKVRCRGVPTVDMNNICLHLEEKTRGKIIHRIGGVLYLFRGRNYDFR 952
            LELIHSHWRRQ VCKVRC+GVPTVDM+N+C HLEE+TRGKII R+GGV+YLFRGRNYD R
Sbjct: 226  LELIHSHWRRQAVCKVRCKGVPTVDMDNVCHHLEERTRGKIILRMGGVVYLFRGRNYDHR 285

Query: 953  TRPKYPIMLWKPATPIYPKLIQEAPEGLTKLEADLLREKGKKLLPICKLARNGIYIKLVK 1132
            TRP+YPIMLWKPATP+YPKLIQEAPEGLTK EAD LR+KGK LLPICKLA+NG+YI LVK
Sbjct: 286  TRPRYPIMLWKPATPVYPKLIQEAPEGLTKSEADELRKKGKNLLPICKLAKNGVYITLVK 345

Query: 1133 DVRDAFEGSELVKVNCQGMEASDYKRLGAKLKELVPCVLLSFEEEQILMWRGREWKSRYQ 1312
            DVRDAFE S +VK+NCQGM ASDYK+LGAKLKELVPC+LLSF++EQILMWRG++WKS YQ
Sbjct: 346  DVRDAFEASSIVKINCQGMHASDYKKLGAKLKELVPCILLSFDDEQILMWRGQDWKSMYQ 405

Query: 1313 GPLRLNTKIQKIEDGES--SNLNESGQSSAS--------TSDTAPGIE-------IISPK 1441
                 +T      D  +  SNLN +   S+          SD   G++       I S +
Sbjct: 406  -----DTPPTVSGDNSTYYSNLNNTSLLSSDDTTGAENLVSDQMVGLDVGASSPKIKSKR 460

Query: 1442 MFSLWKRAVESSQALLLDDIDLTPDSLLEKIEHFEGLSQAISHSYDALILPTSKDPEGSK 1621
            M SLWK A+ES +AL L++I+L PD+LL+K+E F+ +SQA+ HSY A++LP ++  + S+
Sbjct: 461  MMSLWKSAIESRKALFLEEINLDPDALLKKVEEFQNVSQAMEHSYPAVVLPEAEAGKISE 520

Query: 1622 YSSEGR-FRLEASDVSYDEFGRENKNGEXXXXXXXXXXXXXXXXXXXEIEHSVPFGSLPV 1798
              S G+ +  E  D   D    ++ +GE                    I+ SVP GSLPV
Sbjct: 521  EDSSGKSWEFEDDDDDND----DDDSGEDFEV----------------IDESVPLGSLPV 560

Query: 1799 DSIAKRLGED 1828
            D +A++L  D
Sbjct: 561  DFLAEQLSSD 570


>gb|ADN33825.1| RNA splicing factor [Cucumis melo subsp. melo]
          Length = 603

 Score =  592 bits (1525), Expect = e-166
 Identities = 316/537 (58%), Positives = 379/537 (70%), Gaps = 5/537 (0%)
 Frame = +2

Query: 233  ALKATHHRSRYYKPVSEGVLTGDEIGRSVVVGPSGISYHLPGAPFEFQFSYSETPKVKPL 412
            ALK  H RS+YYKPV +GV++ +   R+VV+G SG+SY LPGAPFEFQ+SYSETP VKP+
Sbjct: 107  ALKTFHRRSKYYKPVKDGVISSNG-ERAVVIGDSGVSYLLPGAPFEFQYSYSETPNVKPI 165

Query: 413  AIREPAFLPFAPPTMNRPWTGKAPLLSKKEKERKKNIRLFEPLGHPXXXXXXXXXXXXXX 592
            AIREPAFLPFAPPTM RPWTGKAPL     K  KK I LF+    P              
Sbjct: 166  AIREPAFLPFAPPTMPRPWTGKAPL-----KSSKKKIPLFDSFNPPPPGTKGVKQ----- 215

Query: 593  XVMEMAGTPAKLGWYPKDGRSREEILGIPLKKWEIHALIKPILSHNRQVNIGRDGLTHNM 772
              +++ G P  LG YPK+G+SREEILG PLK WEI  L+KP LSHNRQVN+GRDGLTHNM
Sbjct: 216  --VQLPG-PFPLGQYPKEGKSREEILGEPLKNWEIRMLVKPHLSHNRQVNLGRDGLTHNM 272

Query: 773  LELIHSHWRRQQVCKVRCRGVPTVDMNNICLHLEEKTRGKIIHRIGGVLYLFRGRNYDFR 952
            LELIHSHW+RQ+VCKVRC+GVPTVDM+NIC H+EEKT GKIIHR+GGVLYLFRGRNY++R
Sbjct: 273  LELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEKTGGKIIHRVGGVLYLFRGRNYNYR 332

Query: 953  TRPKYPIMLWKPATPIYPKLIQEAPEGLTKLEADLLREKGKKLLPICKLARNGIYIKLVK 1132
            TRP+YP+MLWKPA P+YPKLIQEAPEGLTK EA+ LR KGK LLPICKLA+NG+YI LV 
Sbjct: 333  TRPQYPVMLWKPAAPVYPKLIQEAPEGLTKEEANELRMKGKNLLPICKLAKNGVYISLVD 392

Query: 1133 DVRDAFEGSELVKVNCQGMEASDYKRLGAKLKELVPCVLLSFEEEQILMWRGREWKSRYQ 1312
            DVR AFEGS LVK++C GM  SDYK+LGAKLKELVPCVLLSF+ EQILMWRG++WKS   
Sbjct: 393  DVRHAFEGSILVKIDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMWRGKDWKS--- 449

Query: 1313 GPLRLNTKIQKIEDGESSN--LNESGQSSASTSDTAPGIE---IISPKMFSLWKRAVESS 1477
              +  + +   +    SSN  L  SG+ S   SD   G       SPKM  LW+RA++S+
Sbjct: 450  --VISDDRSAPLPSRASSNDSLGSSGE-SVENSDLLNGNHHTIKTSPKMKLLWERAIDSN 506

Query: 1478 QALLLDDIDLTPDSLLEKIEHFEGLSQAISHSYDALILPTSKDPEGSKYSSEGRFRLEAS 1657
            +AL+LD+I L PD LLE++E FE +SQA  HSY A I  +S++      S E +   EA+
Sbjct: 507  KALMLDEIGLAPDELLERVEEFERISQATEHSYPAFI-TSSEEVSSPADSPESQDHSEAN 565

Query: 1658 DVSYDEFGRENKNGEXXXXXXXXXXXXXXXXXXXEIEHSVPFGSLPVDSIAKRLGED 1828
              S D+ GRE                         ++  VP GSLPVD IAK+L  +
Sbjct: 566  YNSDDDVGREE-------------------DLFDNVDPLVPLGSLPVDIIAKKLSSE 603


>ref|XP_003530640.1| PREDICTED: CRS2-associated factor 2, chloroplastic-like [Glycine max]
          Length = 593

 Score =  590 bits (1521), Expect(2) = e-166
 Identities = 307/542 (56%), Positives = 383/542 (70%), Gaps = 18/542 (3%)
 Frame = +2

Query: 248  HHRSRYYKPVSE--GVLTGDEIGRSVVVGPSGISYHLPGAPFEFQFSYSETPKVKPLAIR 421
            H RS+Y++PV    G++  D   R+VV+G SG+SY LPGAPFEFQFSYSETPK KP+AIR
Sbjct: 63   HRRSKYHRPVPRDGGIIASDGADRAVVIGESGVSYLLPGAPFEFQFSYSETPKAKPIAIR 122

Query: 422  EPAFLPFAPPTMNRPWTGKAPLLSKKEKERKKNIRLFEPLGHPXXXXXXXXXXXXXXXVM 601
            EPAFLPFAPPTM RPWTGKAPL  KK K+    + LF+    P               ++
Sbjct: 123  EPAFLPFAPPTMPRPWTGKAPLKGKKSKK----VPLFDSFNPPPAGTKGVK-------LV 171

Query: 602  EMAGTPAKLGWYPKDGRSREEILGIPLKKWEIHALIKPILSHNRQVNIGRDGLTHNMLEL 781
            EM G P  +G +P +G+SREEILG PLKKWEIH L+KP++S+NRQVN+GRDGLTHNMLEL
Sbjct: 172  EMPG-PFPMGQFPLEGKSREEILGEPLKKWEIHMLVKPMMSYNRQVNLGRDGLTHNMLEL 230

Query: 782  IHSHWRRQQVCKVRCRGVPTVDMNNICLHLEEKTRGKIIHRIGGVLYLFRGRNYDFRTRP 961
            IHSHW+R++VCK+RC GVPTVDM+N+C H+EEKT GKIIHR+GGV+YLFRGRNY++ TRP
Sbjct: 231  IHSHWKRRRVCKIRCLGVPTVDMDNVCHHIEEKTGGKIIHRVGGVVYLFRGRNYNYSTRP 290

Query: 962  KYPIMLWKPATPIYPKLIQEAPEGLTKLEADLLREKGKKLLPICKLARNGIYIKLVKDVR 1141
            +YP+MLWKPA P+YPKLIQ+AP GLTK EAD LR KGK LLPICKLA+NG+Y  LVKDVR
Sbjct: 291  QYPVMLWKPAAPVYPKLIQDAPGGLTKDEADELRMKGKSLLPICKLAKNGVYTSLVKDVR 350

Query: 1142 DAFEGSELVKVNCQGMEASDYKRLGAKLKELVPCVLLSFEEEQILMWRGREWKSRYQGPL 1321
            DAFEGS LVK+NC+G++ SDYK++GAKLK+LVPCVLLSF++EQILMWRG++WKSRY  PL
Sbjct: 351  DAFEGSILVKINCKGLDPSDYKKIGAKLKDLVPCVLLSFDDEQILMWRGKDWKSRYPQPL 410

Query: 1322 RLNTKIQKIEDGESSNLNESGQSSASTSDTAPGIEIISPKMFSLWKRAVESSQALLLDDI 1501
             + T  +    G   NL  SG++  +       +   SPKM SLWKRA++SS+ALLLD+ 
Sbjct: 411  PVFTPSKANIVG---NLENSGETDDNQYKHDGNMVNTSPKMLSLWKRAIQSSKALLLDEF 467

Query: 1502 DLTPDSLLEKIEHFEGLSQAISHSYDALILPTSK-DPEGS------KYSSEGRFRLE--- 1651
            +L PD+LLEK+E F+ +SQA+ HS+ A  L + + D EGS       YSS+G    E   
Sbjct: 468  NLGPDALLEKVEEFDTVSQALEHSHPAFSLSSKENDAEGSSANFENSYSSDGLHTEEDYA 527

Query: 1652 ------ASDVSYDEFGRENKNGEXXXXXXXXXXXXXXXXXXXEIEHSVPFGSLPVDSIAK 1813
                  +SD    E   E +  E                    ++ S   GSLPVD I K
Sbjct: 528  KFEDSYSSDALQTE--EEEEEEEDEDEDEDEDYYDDEDDDLYAVDTSAQPGSLPVDMIVK 585

Query: 1814 RL 1819
            +L
Sbjct: 586  KL 587



 Score = 23.5 bits (49), Expect(2) = e-166
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +3

Query: 60  TPPPAPISSHRRLPTPASTTPFRPTPHPLFLSP 158
           TPPP         PT  S TP  P P P +  P
Sbjct: 23  TPPP---------PTTVSATPQPPIPIPKYPPP 46


>ref|XP_006438328.1| hypothetical protein CICLE_v10031138mg [Citrus clementina]
            gi|557540524|gb|ESR51568.1| hypothetical protein
            CICLE_v10031138mg [Citrus clementina]
          Length = 552

 Score =  589 bits (1518), Expect = e-165
 Identities = 302/529 (57%), Positives = 375/529 (70%)
 Frame = +2

Query: 233  ALKATHHRSRYYKPVSEGVLTGDEIGRSVVVGPSGISYHLPGAPFEFQFSYSETPKVKPL 412
            A K  H  +RYYKPV+ GV++ D   R V +G SG+SY LPGAPFEFQ+SY+ETP+ KPL
Sbjct: 55   AFKLPHRHTRYYKPVNPGVISSDG-DRGVTIGESGVSYRLPGAPFEFQYSYTETPQAKPL 113

Query: 413  AIREPAFLPFAPPTMNRPWTGKAPLLSKKEKERKKNIRLFEPLGHPXXXXXXXXXXXXXX 592
            AIREPAFLPF PPTM RPWTGK PL     K+ KK I LF+    P              
Sbjct: 114  AIREPAFLPFGPPTMPRPWTGKQPL-----KKSKKKIPLFDSFNPPLPGKKGVKH----- 163

Query: 593  XVMEMAGTPAKLGWYPKDGRSREEILGIPLKKWEIHALIKPILSHNRQVNIGRDGLTHNM 772
              +EM G P  LG YP++G++REEILG PLK+WEI  L+KP+L  NRQVN+GRDGLTHNM
Sbjct: 164  --VEMPG-PFPLGKYPQEGKTREEILGEPLKRWEISMLVKPLLKDNRQVNLGRDGLTHNM 220

Query: 773  LELIHSHWRRQQVCKVRCRGVPTVDMNNICLHLEEKTRGKIIHRIGGVLYLFRGRNYDFR 952
            LELIHSHW+R++V K++C+GVPTVDM+N+C  LEEKT GKII R+GG++YLFRGRNY++R
Sbjct: 221  LELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGGLVYLFRGRNYNYR 280

Query: 953  TRPKYPIMLWKPATPIYPKLIQEAPEGLTKLEADLLREKGKKLLPICKLARNGIYIKLVK 1132
            TRP+YP+MLWKPA P+YPKLIQEAPEGLTK EAD LR KGK LLPICKLA+NG+Y+ LV+
Sbjct: 281  TRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVR 340

Query: 1133 DVRDAFEGSELVKVNCQGMEASDYKRLGAKLKELVPCVLLSFEEEQILMWRGREWKSRYQ 1312
            DVR+AFEGS LVKVNC+GM ASDYK+LGAKLKELVPCVLLSF++EQILMWRG++WKS Y 
Sbjct: 341  DVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYP 400

Query: 1313 GPLRLNTKIQKIEDGESSNLNESGQSSASTSDTAPGIEIISPKMFSLWKRAVESSQALLL 1492
             P   +  +     G++        S   + D + G    SPKM SLWKRA+ES++AL+L
Sbjct: 401  EPPSFSNPVDLDIAGDADG------SGTPSDDPSQGTIRSSPKMISLWKRAIESTKALVL 454

Query: 1493 DDIDLTPDSLLEKIEHFEGLSQAISHSYDALILPTSKDPEGSKYSSEGRFRLEASDVSYD 1672
            D+I+L PD LL+K+E FEG+SQA  HSY AL+L  S++   S   +E     ++ +   D
Sbjct: 455  DEINLGPDDLLKKVEEFEGISQAAEHSYPALVL--SREDGASSSMAEYEDGSQSENYDED 512

Query: 1673 EFGRENKNGEXXXXXXXXXXXXXXXXXXXEIEHSVPFGSLPVDSIAKRL 1819
            EF  E+   +                   +    VP GSLPVD IA+RL
Sbjct: 513  EFYPEDDFND------------DDEFYDSDSSDVVPLGSLPVDHIAERL 549


>ref|XP_006483899.1| PREDICTED: CRS2-associated factor 2, chloroplastic-like [Citrus
            sinensis]
          Length = 552

 Score =  588 bits (1517), Expect = e-165
 Identities = 302/529 (57%), Positives = 374/529 (70%)
 Frame = +2

Query: 233  ALKATHHRSRYYKPVSEGVLTGDEIGRSVVVGPSGISYHLPGAPFEFQFSYSETPKVKPL 412
            A K  H  +RYYKPV+ GV+  D   R V +G SG+SY LPGAPFEFQ+SY+ETP+ KPL
Sbjct: 55   AFKLPHRHTRYYKPVNPGVIASDG-DRGVTIGESGVSYRLPGAPFEFQYSYTETPQAKPL 113

Query: 413  AIREPAFLPFAPPTMNRPWTGKAPLLSKKEKERKKNIRLFEPLGHPXXXXXXXXXXXXXX 592
            AIREPAFLPF PPTM RPWTGK PL     K+ KK I LF+    P              
Sbjct: 114  AIREPAFLPFGPPTMPRPWTGKQPL-----KKSKKKIPLFDSFNPPLPGKKGVKH----- 163

Query: 593  XVMEMAGTPAKLGWYPKDGRSREEILGIPLKKWEIHALIKPILSHNRQVNIGRDGLTHNM 772
              +EM G P  LG YP++G++REEILG PLK+WEI  L+KP+L  NRQVN+GRDGLTHNM
Sbjct: 164  --VEMPG-PFPLGKYPQEGKTREEILGEPLKRWEISMLVKPLLKDNRQVNLGRDGLTHNM 220

Query: 773  LELIHSHWRRQQVCKVRCRGVPTVDMNNICLHLEEKTRGKIIHRIGGVLYLFRGRNYDFR 952
            LELIHSHW+R++V K++C+GVPTVDM+N+C  LEEKT GKII R+GG++YLFRGRNY++R
Sbjct: 221  LELIHSHWKRRRVIKIKCKGVPTVDMDNVCRRLEEKTGGKIIFRVGGLVYLFRGRNYNYR 280

Query: 953  TRPKYPIMLWKPATPIYPKLIQEAPEGLTKLEADLLREKGKKLLPICKLARNGIYIKLVK 1132
            TRP+YP+MLWKPA P+YPKLIQEAPEGLTK EAD LR KGK LLPICKLA+NG+Y+ LV+
Sbjct: 281  TRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVR 340

Query: 1133 DVRDAFEGSELVKVNCQGMEASDYKRLGAKLKELVPCVLLSFEEEQILMWRGREWKSRYQ 1312
            DVR+AFEGS LVKVNC+GM ASDYK+LGAKLKELVPCVLLSF++EQILMWRG++WKS Y 
Sbjct: 341  DVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYP 400

Query: 1313 GPLRLNTKIQKIEDGESSNLNESGQSSASTSDTAPGIEIISPKMFSLWKRAVESSQALLL 1492
             P   +  +     G++        S   + D + G    SPKM SLWKRA+ES++AL+L
Sbjct: 401  EPPSFSNPVDLDIAGDADG------SGTPSDDPSQGTIRSSPKMISLWKRAIESTKALVL 454

Query: 1493 DDIDLTPDSLLEKIEHFEGLSQAISHSYDALILPTSKDPEGSKYSSEGRFRLEASDVSYD 1672
            D+I+L PD LL+K+E FEG+SQA  HSY AL+L  S++   S   +E     ++ +   D
Sbjct: 455  DEINLGPDDLLKKVEEFEGISQAAEHSYPALVL--SREDGASSSMAEYEDGSQSENYDED 512

Query: 1673 EFGRENKNGEXXXXXXXXXXXXXXXXXXXEIEHSVPFGSLPVDSIAKRL 1819
            EF  E+   +                   +    VP GSLPVD IA+RL
Sbjct: 513  EFYPEDDFND------------DDEFYDSDSSDVVPLGSLPVDHIAERL 549


>ref|XP_006416086.1| hypothetical protein EUTSA_v10007246mg [Eutrema salsugineum]
            gi|557093857|gb|ESQ34439.1| hypothetical protein
            EUTSA_v10007246mg [Eutrema salsugineum]
          Length = 563

 Score =  587 bits (1514), Expect = e-165
 Identities = 308/532 (57%), Positives = 376/532 (70%), Gaps = 1/532 (0%)
 Frame = +2

Query: 233  ALKATHHRSRYYKPVSEGVLTGDEIGRSVVVGPSGISYHLPGAPFEFQFSYSETPKVKPL 412
            ALK  H R+RYYKPV EGV++ D   R++V+G SG+SY LPGAPFEFQFSYSETPK KP+
Sbjct: 67   ALKLPHRRTRYYKPVKEGVISSDG-ERTIVIGDSGVSYQLPGAPFEFQFSYSETPKAKPV 125

Query: 413  AIREPAFLPFAPPTMNRPWTGKAPLLSKKEKERKKNIRLFEPLGHPXXXXXXXXXXXXXX 592
             IREPAFLPFAPPTM RPWTGKAPL     K+ KK I LF+    P              
Sbjct: 126  GIREPAFLPFAPPTMPRPWTGKAPL-----KKSKKKIPLFDSFNPPPAGKSGVKY----- 175

Query: 593  XVMEMAGTPAKLGWYPKDGRSREEILGIPLKKWEIHALIKPILSHNRQVNIGRDGLTHNM 772
              +EM G P   G YPK+  +R+EILG PLKKWE   LIKP +  NRQVN+GRDG THNM
Sbjct: 176  --VEMPG-PYPFGRYPKEAMTRDEILGEPLKKWEKGMLIKPHMHDNRQVNLGRDGFTHNM 232

Query: 773  LELIHSHWRRQQVCKVRCRGVPTVDMNNICLHLEEKTRGKIIHRIGGVLYLFRGRNYDFR 952
            LELIHSHW+R++VCKVRC+GVPTVDM+N+C  LEEKT G+IIHR+GGV+YLFRGRNY++R
Sbjct: 233  LELIHSHWKRRRVCKVRCKGVPTVDMDNVCRVLEEKTGGEIIHRVGGVVYLFRGRNYNYR 292

Query: 953  TRPKYPIMLWKPATPIYPKLIQEAPEGLTKLEADLLREKGKKLLPICKLARNGIYIKLVK 1132
            TRP+YP+MLWKPA P+YPKLIQE PEGLTK EA   R KGK L PICKL++NG+Y+ LVK
Sbjct: 293  TRPQYPLMLWKPAAPVYPKLIQEIPEGLTKDEAHEFRVKGKSLKPICKLSKNGVYVSLVK 352

Query: 1133 DVRDAFEGSELVKVNCQGMEASDYKRLGAKLKELVPCVLLSFEEEQILMWRGREWKSRY- 1309
            DVRDAFE S LVKV+C G+E SDYK++GAKLKELVPCVLLSF++EQILMWRGR+WKSR+ 
Sbjct: 353  DVRDAFELSPLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDDEQILMWRGRDWKSRFL 412

Query: 1310 QGPLRLNTKIQKIEDGESSNLNESGQSSASTSDTAPGIEIISPKMFSLWKRAVESSQALL 1489
              PL        IED     L+ S ++    + + P   I SPKM SLWKRA+ESS+A++
Sbjct: 413  DNPLTPLLSETNIED----ELDPSDKTGEEQTASDPNTVISSPKMISLWKRALESSKAIV 468

Query: 1490 LDDIDLTPDSLLEKIEHFEGLSQAISHSYDALILPTSKDPEGSKYSSEGRFRLEASDVSY 1669
            L+++DL+PD+LLEK+E FEG SQA  H+Y AL+LP S D        E R  +  SD+  
Sbjct: 469  LEELDLSPDNLLEKVEEFEGTSQAAEHTYTALVLP-SNDGAEDYVDDEERPPVVYSDID- 526

Query: 1670 DEFGRENKNGEXXXXXXXXXXXXXXXXXXXEIEHSVPFGSLPVDSIAKRLGE 1825
            D+F  E  + +                    +E + P GSLPVD I ++L E
Sbjct: 527  DDFDDECSDDD------------------ESLEPAGPVGSLPVDKIVRKLRE 560


>gb|EMJ28681.1| hypothetical protein PRUPE_ppa003604mg [Prunus persica]
          Length = 562

 Score =  583 bits (1504), Expect = e-164
 Identities = 299/535 (55%), Positives = 379/535 (70%), Gaps = 3/535 (0%)
 Frame = +2

Query: 233  ALKATHHRSRYYKPVSEGVLTGDEIGRSVVVGPSGISYHLPGAPFEFQFSYSETPKVKPL 412
            ALK  H R++YYKPV +GV++ D   R+VV+G +G+SY LPGAPFEFQ+SYSETPKVKPL
Sbjct: 58   ALKTVHRRTKYYKPVRDGVISSDG-DRAVVIGENGVSYLLPGAPFEFQYSYSETPKVKPL 116

Query: 413  AIREPAFLPFAPPTMNRPWTGKAPLLSKKEKERKKNIRLFEPLGHPXXXXXXXXXXXXXX 592
            AIREPAFLPFAPPTM RPWTGKAPL S KEK+ K+ + L +  G                
Sbjct: 117  AIREPAFLPFAPPTMPRPWTGKAPLKSAKEKKLKRKVPLLDSFG---------PMAPGTS 167

Query: 593  XVMEMA-GTPAKLGWYPKDGRSREEILGIPLKKWEIHALIKPILSHNRQVNIGRDGLTHN 769
             V E+    P +LG YPK  ++REEILG PLKKWEI  LI+P LS NRQVN+GRDGLTHN
Sbjct: 168  GVKEVVMARPVELGKYPKQEKTREEILGEPLKKWEIKMLIQPQLSDNRQVNLGRDGLTHN 227

Query: 770  MLELIHSHWRRQQVCKVRCRGVPTVDMNNICLHLEEKTRGKIIHRIGGVLYLFRGRNYDF 949
            ML+LIHSHW+R+ VCKV+C+GVPTVDM+N+C H+EE+T+GKIIHR+GGV+YLFRGRNY +
Sbjct: 228  MLDLIHSHWKRRPVCKVKCKGVPTVDMDNVCRHIEERTKGKIIHRVGGVVYLFRGRNYSY 287

Query: 950  RTRPKYPIMLWKPATPIYPKLIQEAPEGLTKLEADLLREKGKKLLPICKLARNGIYIKLV 1129
            + RP+YP+MLWKPA P+YPKLIQEAPEGLTK +A+  R+KGK+LLPICKLA+NG+YI LV
Sbjct: 288  KDRPQYPLMLWKPAAPVYPKLIQEAPEGLTKDQAEEFRKKGKRLLPICKLAKNGVYITLV 347

Query: 1130 KDVRDAFEGSELVKVNCQGMEASDYKRLGAKLKELVPCVLLSFEEEQILMWRGREWKSRY 1309
            +DVR AFEGS LVK++C+GM ASDYK+LGAKLKELVPCVLLSF++E ILMWRG  W S +
Sbjct: 348  RDVRHAFEGSPLVKIDCRGMHASDYKKLGAKLKELVPCVLLSFDDEHILMWRGPNWISMH 407

Query: 1310 QGPLRLNTKIQKIEDGESSNLNESGQSSASTSDTAPGIEII--SPKMFSLWKRAVESSQA 1483
            Q            +  +   L+ +G+         P  + +  SPKM SLWKR+++S++A
Sbjct: 408  Q------AAPSPSDTADFDILSSTGRGKDYDKPCKPDTKTVMTSPKMMSLWKRSIDSNKA 461

Query: 1484 LLLDDIDLTPDSLLEKIEHFEGLSQAISHSYDALILPTSKDPEGSKYSSEGRFRLEASDV 1663
            LLLD++DL PD+LL+K+E FEG+SQA  HSY ALI+ +    +G+  S +    +  SD 
Sbjct: 462  LLLDELDLDPDALLKKVEEFEGVSQATEHSYPALIVSSE---DGTSSSVQVFEEVPQSD- 517

Query: 1664 SYDEFGRENKNGEXXXXXXXXXXXXXXXXXXXEIEHSVPFGSLPVDSIAKRLGED 1828
             Y E+   + N +                       S+P GSLPVD I + L  D
Sbjct: 518  PYSEYDDYSDNYDYESDDDDAFYD----------SDSIPLGSLPVDVIVEELDHD 562


>gb|ESW25745.1| hypothetical protein PHAVU_003G062100g [Phaseolus vulgaris]
          Length = 575

 Score =  583 bits (1503), Expect = e-164
 Identities = 301/533 (56%), Positives = 380/533 (71%), Gaps = 9/533 (1%)
 Frame = +2

Query: 248  HHRSRYYKPV-SEGVLTGDEIGRSVVVGPSGISYHLPGAPFEFQFSYSETPKVKPLAIRE 424
            H  S+Y+K V S+GV+  D   RSV++G SG+SY LPGAPFEFQFSYSETPK KP+AIRE
Sbjct: 68   HRNSKYHKRVPSDGVVVSDAADRSVIIGESGVSYLLPGAPFEFQFSYSETPKAKPIAIRE 127

Query: 425  PAFLPFAPPTMNRPWTGKAPLLSKKEKERKKNIRLFEPLGHPXXXXXXXXXXXXXXXVME 604
            PAFLPFAPPTM RPWTGKAPL SKK+K     I LF+    P                +E
Sbjct: 128  PAFLPFAPPTMPRPWTGKAPLKSKKKK-----IPLFDSFNPPPPGTKGVKR-------VE 175

Query: 605  MAGTPAKLGWYPKDGRSREEILGIPLKKWEIHALIKPILSHNRQVNIGRDGLTHNMLELI 784
            M G P  +G +PK+G++REEILG PLKKWE+  L++P++S+NRQVN+GRDGLTHNMLEL+
Sbjct: 176  MPG-PFPMGQFPKEGKTREEILGEPLKKWEVQMLVQPMISYNRQVNLGRDGLTHNMLELV 234

Query: 785  HSHWRRQQVCKVRCRGVPTVDMNNICLHLEEKTRGKIIHRIGGVLYLFRGRNYDFRTRPK 964
            HSHW+R ++CK+RC GVPTVDM+N+C H+EEKT GKIIHR GGV+YLFRGRNY++RTRP+
Sbjct: 235  HSHWKRSRICKIRCLGVPTVDMDNVCHHIEEKTGGKIIHRAGGVVYLFRGRNYNYRTRPQ 294

Query: 965  YPIMLWKPATPIYPKLIQEAPEGLTKLEADLLREKGKKLLPICKLARNGIYIKLVKDVRD 1144
            YP+MLWKPATP+YPKLI++AP GLTK EAD LR+KGK LLPICKLA+NG+Y  LVK+VRD
Sbjct: 295  YPVMLWKPATPVYPKLIEDAPGGLTKAEADELRKKGKSLLPICKLAKNGVYTSLVKNVRD 354

Query: 1145 AFEGSELVKVNCQGMEASDYKRLGAKLKELVPCVLLSFEEEQILMWRGREWKSRYQGPLR 1324
            AFEGS LVKVNC+G++ SDYK++GAKLK+LVPCVLLSF++EQIL+WRG++WKSRY  P+ 
Sbjct: 355  AFEGSVLVKVNCKGLDPSDYKKIGAKLKDLVPCVLLSFDDEQILIWRGKDWKSRYHQPVP 414

Query: 1325 LNTKIQKIEDGESSNLNESGQSSASTSDTAP-GIEIISPKMFSLWKRAVESSQALLLDDI 1501
            +       + G + N   SG++  + ++     +   SPKM SLWKRA+ESS+ALLLD+ 
Sbjct: 415  V---FAPSKSGFTGNSESSGEADGNQTEHGDNNVVNTSPKMLSLWKRAIESSKALLLDEF 471

Query: 1502 DLTPDSLLEKIEHFEGLSQAISHSYDALILP-TSKDPEGSK------YSSEGRFRLEASD 1660
            +L PD LLEK+E FE  SQA+ HS+ A  L     D EGS       YSS+  F  E  D
Sbjct: 472  NLGPDCLLEKVEEFEIASQALEHSHPAFSLSFKENDSEGSAANFENIYSSDD-FSAEEDD 530

Query: 1661 VSYDEFGRENKNGEXXXXXXXXXXXXXXXXXXXEIEHSVPFGSLPVDSIAKRL 1819
             + DE   ++   E                    ++ S   GSL +D I K+L
Sbjct: 531  ENEDEEDYDDYQDEDDDSYV--------------VDTSAQPGSLGIDMIVKKL 569


>ref|XP_002315689.2| hypothetical protein POPTR_0010s05230g [Populus trichocarpa]
            gi|550329113|gb|EEF01860.2| hypothetical protein
            POPTR_0010s05230g [Populus trichocarpa]
          Length = 557

 Score =  582 bits (1501), Expect = e-163
 Identities = 309/531 (58%), Positives = 375/531 (70%), Gaps = 2/531 (0%)
 Frame = +2

Query: 233  ALKATHHRSRYYKPVSEG--VLTGDEIGRSVVVGPSGISYHLPGAPFEFQFSYSETPKVK 406
            A K  H R++YYKPV +G  V+  D   RSV+VG SG+SY LPGAPFEFQFSYSETPKVK
Sbjct: 56   AFKIPHLRTKYYKPVKDGGGVIASDG-DRSVLVGDSGVSYLLPGAPFEFQFSYSETPKVK 114

Query: 407  PLAIREPAFLPFAPPTMNRPWTGKAPLLSKKEKERKKNIRLFEPLGHPXXXXXXXXXXXX 586
            PLAIREPAFLPFAPPTM RPWTGK PL     K  KK I +F+    P            
Sbjct: 115  PLAIREPAFLPFAPPTMPRPWTGKPPL-----KTSKKKIPVFDSFNPPPAGKKGVKY--- 166

Query: 587  XXXVMEMAGTPAKLGWYPKDGRSREEILGIPLKKWEIHALIKPILSHNRQVNIGRDGLTH 766
                +EM G P   G +P++G+SREEILG PLK WEI  LIKP LS NRQVN+G DGLTH
Sbjct: 167  ----VEMPG-PYPFGKFPEEGKSREEILGEPLKTWEIKLLIKPHLSDNRQVNLGEDGLTH 221

Query: 767  NMLELIHSHWRRQQVCKVRCRGVPTVDMNNICLHLEEKTRGKIIHRIGGVLYLFRGRNYD 946
            NMLEL+HSHW+R++VCKVRC+GVPTVDM+N+C HLEEKT GKIIHR+GGV+YLFRGRNY+
Sbjct: 222  NMLELVHSHWKRRRVCKVRCKGVPTVDMDNVCRHLEEKTGGKIIHRVGGVVYLFRGRNYN 281

Query: 947  FRTRPKYPIMLWKPATPIYPKLIQEAPEGLTKLEADLLREKGKKLLPICKLARNGIYIKL 1126
            +RTRP+YP+MLWKPATP+YPKLIQEAPEGLTK +AD  R+KGK LLPICKLA+NG+YI L
Sbjct: 282  YRTRPQYPVMLWKPATPVYPKLIQEAPEGLTKAQADEFRKKGKNLLPICKLAKNGVYITL 341

Query: 1127 VKDVRDAFEGSELVKVNCQGMEASDYKRLGAKLKELVPCVLLSFEEEQILMWRGREWKSR 1306
            V+DVR AFEGS LVKV+C+GME SDYK+LGAKLK+LVPCVLLSF++EQILMWRG++WKS 
Sbjct: 342  VRDVRAAFEGSPLVKVDCKGMEPSDYKKLGAKLKDLVPCVLLSFDDEQILMWRGQDWKSM 401

Query: 1307 YQGPLRLNTKIQKIEDGESSNLNESGQSSASTSDTAPGIEIISPKMFSLWKRAVESSQAL 1486
            Y  P    +     E   +S  ++SG+S     ++   I   SPKM  LWK A+ES++A+
Sbjct: 402  Y--PEARPSISFPAELDIASGSDDSGKSDDDCDNSDAKILSSSPKMMLLWKHALESNKAI 459

Query: 1487 LLDDIDLTPDSLLEKIEHFEGLSQAISHSYDALILPTSKDPEGSKYSSEGRFRLEASDVS 1666
            LLD+IDL PD+LL K+E FEG+SQA  HSY AL++           SSE     + S  S
Sbjct: 460  LLDEIDLGPDALLTKVEEFEGISQATEHSYPALVM-----------SSE-----DGSSNS 503

Query: 1667 YDEFGRENKNGEXXXXXXXXXXXXXXXXXXXEIEHSVPFGSLPVDSIAKRL 1819
               F  ++ +                     E+E S P GSL +D IA++L
Sbjct: 504  ISTFEDDSHSENFSEDDMYSDDEYYDSESFEELETSAPPGSLSIDLIAEKL 554


>ref|NP_173754.2| CRS2-associated factor 2 [Arabidopsis thaliana]
            gi|75173812|sp|Q9LDA9.1|CAF2P_ARATH RecName:
            Full=CRS2-associated factor 2, chloroplastic; AltName:
            Full=Chloroplastic group IIA intron splicing facilitator
            CRS2-associated factor 2; Flags: Precursor
            gi|8778588|gb|AAF79596.1|AC007945_16 F28C11.4
            [Arabidopsis thaliana]
            gi|9295699|gb|AAF87005.1|AC005292_14 F26F24.27
            [Arabidopsis thaliana] gi|17065312|gb|AAL32810.1| Unknown
            protein [Arabidopsis thaliana] gi|21387129|gb|AAM47968.1|
            unknown protein [Arabidopsis thaliana]
            gi|332192262|gb|AEE30383.1| CRS2-associated factor 2
            [Arabidopsis thaliana]
          Length = 564

 Score =  582 bits (1500), Expect = e-163
 Identities = 300/532 (56%), Positives = 372/532 (69%), Gaps = 1/532 (0%)
 Frame = +2

Query: 233  ALKATHHRSRYYKPVSEGVLTGDEIGRSVVVGPSGISYHLPGAPFEFQFSYSETPKVKPL 412
            ALK  HHR+RYYKPV EGV++ D   R++++G SG+SY LPGAPFEFQFSYSETPKVKP+
Sbjct: 68   ALKLPHHRTRYYKPVKEGVISSDG-DRTILIGDSGVSYQLPGAPFEFQFSYSETPKVKPV 126

Query: 413  AIREPAFLPFAPPTMNRPWTGKAPLLSKKEKERKKNIRLFEPLGHPXXXXXXXXXXXXXX 592
             IREPAF+PFAPPTM RPWTGKAPL     K+ KK I LF+    P              
Sbjct: 127  GIREPAFMPFAPPTMPRPWTGKAPL-----KKSKKKIPLFDSFNPPPAGKSGVKY----- 176

Query: 593  XVMEMAGTPAKLGWYPKDGRSREEILGIPLKKWEIHALIKPILSHNRQVNIGRDGLTHNM 772
              +EM G P   G YPK+G +REE+LG PLK+WE   LIKP +  NRQVN+GRDG THNM
Sbjct: 177  --VEMPG-PLPFGRYPKEGMNREEVLGEPLKRWEKGMLIKPHMHDNRQVNLGRDGFTHNM 233

Query: 773  LELIHSHWRRQQVCKVRCRGVPTVDMNNICLHLEEKTRGKIIHRIGGVLYLFRGRNYDFR 952
            LELIHSHW+R++VCKVRC+GVPTVDMNN+C  LEEKT G+IIHR+GGV+YLFRGRNY++R
Sbjct: 234  LELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVGGVVYLFRGRNYNYR 293

Query: 953  TRPKYPIMLWKPATPIYPKLIQEAPEGLTKLEADLLREKGKKLLPICKLARNGIYIKLVK 1132
            TRP+YP+MLWKPA P+YPKLIQE PEGLTK EA   R KGK L PICKL++NG+Y+ LVK
Sbjct: 294  TRPQYPLMLWKPAAPVYPKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVK 353

Query: 1133 DVRDAFEGSELVKVNCQGMEASDYKRLGAKLKELVPCVLLSFEEEQILMWRGREWKSRYQ 1312
            DVRDAFE S LVKV+C G+E SDYK++GAKLKELVPCVLLSF++EQILMWRGREWKSR+ 
Sbjct: 354  DVRDAFELSSLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDDEQILMWRGREWKSRFV 413

Query: 1313 GPLRLNTKIQKIEDGESSN-LNESGQSSASTSDTAPGIEIISPKMFSLWKRAVESSQALL 1489
                 N  I  + +  ++N L+ S + S   +   P   I SPKM SLW+RA+ESS+A++
Sbjct: 414  D----NPLIPSLSETNTTNELDPSDKPSEEQTVANPSTTISSPKMISLWQRALESSKAVI 469

Query: 1490 LDDIDLTPDSLLEKIEHFEGLSQAISHSYDALILPTSKDPEGSKYSSEGRFRLEASDVSY 1669
            L+++DL PD LL+K+E  EG S A  H+Y A++L  +          + R     SD+  
Sbjct: 470  LEELDLGPDDLLKKVEELEGTSLAAEHTYTAMVLSNTDGAAEDYVDEKDRSEEYYSDID- 528

Query: 1670 DEFGRENKNGEXXXXXXXXXXXXXXXXXXXEIEHSVPFGSLPVDSIAKRLGE 1825
            D+F  E  + E                    ++   P GSLPVD I ++L E
Sbjct: 529  DDFDDECSDDE-------------------SLDPVGPVGSLPVDKIVRKLRE 561


>ref|XP_002893285.1| hypothetical protein ARALYDRAFT_335585 [Arabidopsis lyrata subsp.
            lyrata] gi|297339127|gb|EFH69544.1| hypothetical protein
            ARALYDRAFT_335585 [Arabidopsis lyrata subsp. lyrata]
          Length = 565

 Score =  580 bits (1494), Expect = e-162
 Identities = 303/532 (56%), Positives = 374/532 (70%), Gaps = 1/532 (0%)
 Frame = +2

Query: 233  ALKATHHRSRYYKPVSEGVLTGDEIGRSVVVGPSGISYHLPGAPFEFQFSYSETPKVKPL 412
            ALK  HHR+RYYKPV EGV++ D   R++V+G SG+SY LPGAPFEFQFSYSETPK KP+
Sbjct: 70   ALKLPHHRTRYYKPVKEGVISSDG-DRTIVIGESGVSYQLPGAPFEFQFSYSETPKAKPV 128

Query: 413  AIREPAFLPFAPPTMNRPWTGKAPLLSKKEKERKKNIRLFEPLGHPXXXXXXXXXXXXXX 592
             IREPAF+PFAPPTM RPWTGKAPL     K+ KK I LF+    P              
Sbjct: 129  GIREPAFMPFAPPTMPRPWTGKAPL-----KKSKKKIPLFDSFNPPPAGKSGVKY----- 178

Query: 593  XVMEMAGTPAKLGWYPKDGRSREEILGIPLKKWEIHALIKPILSHNRQVNIGRDGLTHNM 772
              +EM G P   G YPK+G +REEILG PLKKWE   LIKP +  NRQVN+GRDG THNM
Sbjct: 179  --VEMPG-PLPFGRYPKEGMNREEILGEPLKKWEKGMLIKPHMHDNRQVNLGRDGFTHNM 235

Query: 773  LELIHSHWRRQQVCKVRCRGVPTVDMNNICLHLEEKTRGKIIHRIGGVLYLFRGRNYDFR 952
            LELIHSHW+R++VCKVRC+GVPTVDM+N+C  LEEKT G+IIHR+GGV+YLFRGRNY++R
Sbjct: 236  LELIHSHWKRRRVCKVRCKGVPTVDMDNVCRVLEEKTGGEIIHRVGGVVYLFRGRNYNYR 295

Query: 953  TRPKYPIMLWKPATPIYPKLIQEAPEGLTKLEADLLREKGKKLLPICKLARNGIYIKLVK 1132
            TRP+YP+MLWKPA P+YPKLIQE PEGLTK EA   R KGK L PICKL++NG+Y+ LVK
Sbjct: 296  TRPQYPLMLWKPAAPVYPKLIQEVPEGLTKEEALEFRVKGKSLRPICKLSKNGVYVSLVK 355

Query: 1133 DVRDAFEGSELVKVNCQGMEASDYKRLGAKLKELVPCVLLSFEEEQILMWRGREWKSRYQ 1312
            DVRDAFE S LVKV+C G+E SDYK++GAKLKELVPCVLLSF++EQILMWRGR+WKSR+ 
Sbjct: 356  DVRDAFELSPLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDDEQILMWRGRDWKSRFV 415

Query: 1313 GPLRLNTKIQKIEDGESSN-LNESGQSSASTSDTAPGIEIISPKMFSLWKRAVESSQALL 1489
                 N  I  + +   +N L+ S + S   + + P   I SPKM SLWKRA+ESS+A++
Sbjct: 416  D----NPLIPSLSETNIANELDPSDKPSDEQTVSDPSSTISSPKMISLWKRALESSKAVI 471

Query: 1490 LDDIDLTPDSLLEKIEHFEGLSQAISHSYDALILPTSKDPEGSKYSSEGRFRLEASDVSY 1669
            L+++DL PD LL+K+E  EG S A  HSY A++L ++ D     Y  +     E SD+  
Sbjct: 472  LEELDLGPDDLLKKVEELEGTSLAAEHSYTAMVL-SNTDGAAEDYVDDKDRSEEYSDID- 529

Query: 1670 DEFGRENKNGEXXXXXXXXXXXXXXXXXXXEIEHSVPFGSLPVDSIAKRLGE 1825
            D+F  E  + E                    ++   P G+LPVD I ++L E
Sbjct: 530  DDFDDECSDDE-------------------SLDPVGPVGTLPVDKIVRKLRE 562


>ref|XP_006307133.1| hypothetical protein CARUB_v10008723mg [Capsella rubella]
            gi|482575844|gb|EOA40031.1| hypothetical protein
            CARUB_v10008723mg [Capsella rubella]
          Length = 565

 Score =  579 bits (1493), Expect = e-162
 Identities = 302/532 (56%), Positives = 372/532 (69%), Gaps = 1/532 (0%)
 Frame = +2

Query: 233  ALKATHHRSRYYKPVSEGVLTGDEIGRSVVVGPSGISYHLPGAPFEFQFSYSETPKVKPL 412
            ALK  HHR+RYYKPV EGV++  E  R++++G SG+SY LPGAPFEFQFSYSETPKVKP+
Sbjct: 69   ALKLPHHRTRYYKPVKEGVISS-EGDRTILIGDSGVSYQLPGAPFEFQFSYSETPKVKPV 127

Query: 413  AIREPAFLPFAPPTMNRPWTGKAPLLSKKEKERKKNIRLFEPLGHPXXXXXXXXXXXXXX 592
             IREPAF+PFAPPTM RPWTGKAPL     K+ KK I LF+    P              
Sbjct: 128  GIREPAFMPFAPPTMPRPWTGKAPL-----KKSKKKIPLFDSFNPPPAGKSGVKY----- 177

Query: 593  XVMEMAGTPAKLGWYPKDGRSREEILGIPLKKWEIHALIKPILSHNRQVNIGRDGLTHNM 772
              +EM G P   G YPK+G +R+EILG PLK+WE   LIKP +  NRQVN+GRDG THNM
Sbjct: 178  --VEMPG-PLPFGRYPKEGLNRDEILGEPLKRWEKGMLIKPHMHDNRQVNLGRDGFTHNM 234

Query: 773  LELIHSHWRRQQVCKVRCRGVPTVDMNNICLHLEEKTRGKIIHRIGGVLYLFRGRNYDFR 952
            LELIHSHW+R++VCKVRC+GVPTVDM+N+C  LEEKT G+IIHR+GGV+YLFRGRNY++R
Sbjct: 235  LELIHSHWKRRRVCKVRCKGVPTVDMDNVCRVLEEKTGGEIIHRVGGVVYLFRGRNYNYR 294

Query: 953  TRPKYPIMLWKPATPIYPKLIQEAPEGLTKLEADLLREKGKKLLPICKLARNGIYIKLVK 1132
            TRP+YP+MLWKPA P+YPKLIQE PEGLTK EA   R KGK L PICKL++NG+Y+ LVK
Sbjct: 295  TRPQYPLMLWKPAAPVYPKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVK 354

Query: 1133 DVRDAFEGSELVKVNCQGMEASDYKRLGAKLKELVPCVLLSFEEEQILMWRGREWKSRY- 1309
            DVRDAFE S LVKV+C G+E SDYK++GAKLKELVPCVLLSF++EQILMWRGREWKSR+ 
Sbjct: 355  DVRDAFELSSLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDDEQILMWRGREWKSRFL 414

Query: 1310 QGPLRLNTKIQKIEDGESSNLNESGQSSASTSDTAPGIEIISPKMFSLWKRAVESSQALL 1489
              PL  N      E    + L+ S ++      + P   I SPKM SLWKRA+E+S+A++
Sbjct: 415  DNPLIPNLS----ETNIVNELDPSDKAIEEEPVSDPNTVISSPKMISLWKRALETSKAVI 470

Query: 1490 LDDIDLTPDSLLEKIEHFEGLSQAISHSYDALILPTSKDPEGSKYSSEGRFRLEASDVSY 1669
            L+++DL PD LL+K+E  EG S A  H+Y AL+LP S D    +Y  +    +E      
Sbjct: 471  LEELDLGPDDLLKKVEELEGTSLAAEHTYTALVLPDS-DGAAEEYVEDKDQSVEYYSDID 529

Query: 1670 DEFGRENKNGEXXXXXXXXXXXXXXXXXXXEIEHSVPFGSLPVDSIAKRLGE 1825
            D+F  E  + E                    ++   P GSLPVD I ++L E
Sbjct: 530  DDFDDEGSDDE-------------------SLDPVGPVGSLPVDKIVRKLRE 562


>ref|NP_001105669.1| CRS2-associated factor 2, chloroplastic precursor [Zea mays]
            gi|75147311|sp|Q84N48.1|CAF2P_MAIZE RecName:
            Full=CRS2-associated factor 2, chloroplastic; AltName:
            Full=Chloroplastic group IIA intron splicing facilitator
            CRS2-associated factor 2; Flags: Precursor
            gi|30349369|gb|AAP22136.1| CRS2-associated factor 2 [Zea
            mays] gi|414877310|tpg|DAA54441.1| TPA: crs2 associated
            factor2 [Zea mays]
          Length = 611

 Score =  578 bits (1491), Expect = e-162
 Identities = 302/550 (54%), Positives = 381/550 (69%), Gaps = 18/550 (3%)
 Frame = +2

Query: 233  ALKATHHRSRYYKPV--------SEGVLTGDEI----GRSVVVGPSGISYHLPGAPFEFQ 376
            A +A H R+ Y KPV         E +L  D      GR+VVVGPSG+S+ LPGAPF+FQ
Sbjct: 76   AFRAAHLRTAYRKPVPPAAAAGEGEALLAADPTDAASGRAVVVGPSGLSFRLPGAPFDFQ 135

Query: 377  FSYSETPKVKPLAIREPAFLPFAPPTMNRPWTGKAPLLSKKEKERKKNIRLFEPLGHPXX 556
            FSYSE P+  PLAIREPAFLPFAPPTM RPWTGKAPLL+K+EK R++ +RL  PLG    
Sbjct: 136  FSYSEAPRAPPLAIREPAFLPFAPPTMPRPWTGKAPLLTKEEKARRRGVRLHTPLGQETP 195

Query: 557  XXXXXXXXXXXXXV---MEMAGTPAKLGWYPKDGRSREEILGIPLKKWEIHALIKPILSH 727
                             M++A         P DGRSREE+LG PL   E+ AL+KP +SH
Sbjct: 196  QTVSAHGIMMEVRERRKMDLARVS------PGDGRSREEVLGEPLTPSEVRALVKPHISH 249

Query: 728  NRQVNIGRDGLTHNMLELIHSHWRRQQVCKVRCRGVPTVDMNNICLHLEEKTRGKIIHRI 907
            NRQ+NIGRDGLTHNMLE+IH HWRRQ++CKVRCRGVPTVDM N+C HLEEK+ GK+IHR+
Sbjct: 250  NRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVIHRV 309

Query: 908  GGVLYLFRGRNYDFRTRPKYPIMLWKPATPIYPKLIQEAPEGLTKLEADLLREKGKKLLP 1087
            GGV++L+RGR+YD +TRP+YP+MLWKPATP+YPKLI+EAP+G TK EAD +R KG+ LLP
Sbjct: 310  GGVVFLYRGRHYDPKTRPRYPLMLWKPATPVYPKLIKEAPDGFTKEEADEMRRKGRDLLP 369

Query: 1088 ICKLARNGIYIKLVKDVRDAFEGSELVKVNCQGMEASDYKRLGAKLKELVPCVLLSFEEE 1267
            ICKLA+NGIYI LVKDVRDAFEGS+LVK++C+G+  SDYK++GAKL++LVPCVLLSF++E
Sbjct: 370  ICKLAKNGIYITLVKDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSFDDE 429

Query: 1268 QILMWRGREWKSRYQGPLRLNTKIQKIEDGESSNLNESGQSSASTSDTAPGIEIISPKMF 1447
            QILM RG+EWKSRY  PL L  K+ K     +S +N S + S + +  A   E++ PKMF
Sbjct: 430  QILMHRGKEWKSRYSKPLTLIPKVPKNNLAMTSVMNSSDEVSDANTQVAIR-EVLRPKMF 488

Query: 1448 SLWKRAVESSQALLLDDID---LTPDSLLEKIEHFEGLSQAISHSYDALILPTSKDPEGS 1618
             LWK AV+SS ALLLDD +   LTPDSLL  +E F   SQA+ HS+ AL++ T+ D    
Sbjct: 489  KLWKSAVDSSLALLLDDAEANNLTPDSLLTLVEEFSVTSQAVEHSFPALLV-TNGDASTD 547

Query: 1619 KYSSEGRFRLEASDVSYDEFGRENKNGEXXXXXXXXXXXXXXXXXXXEIEHSVPFGSLPV 1798
              S+E  +  +  + S       N+ G+                    +E SVP GSLP+
Sbjct: 548  SLSAE--YMNDEPETSV----AGNEEGQLEQSPDLRDDEHFDVDMFERLESSVPLGSLPI 601

Query: 1799 DSIAKRLGED 1828
            DS+ +RL  +
Sbjct: 602  DSMIERLNSE 611


>ref|XP_004298480.1| PREDICTED: CRS2-associated factor 2, chloroplastic-like [Fragaria
            vesca subsp. vesca]
          Length = 572

 Score =  578 bits (1490), Expect = e-162
 Identities = 301/546 (55%), Positives = 384/546 (70%), Gaps = 14/546 (2%)
 Frame = +2

Query: 233  ALKATHHRSRYYKPVSEGVLTGDEIGRSVVVGPSGISYHLPGAPFEFQFSYSETPKVKPL 412
            ALK  H R++YYKPV +GV+T D   R+VV+G +G+SY LPGAPFEFQ+SYSETPK KPL
Sbjct: 59   ALKNFHRRTKYYKPVRDGVITSDG-DRAVVIGENGLSYQLPGAPFEFQYSYSETPKAKPL 117

Query: 413  AIREPAFLPFAPPTMNRPWTGKAPLLSKKEKERKKNIRLFEPLGHPXXXXXXXXXXXXXX 592
            AIREPAFLPFA P M RPWTGKAPL S KEK+ K+ + LF+    P              
Sbjct: 118  AIREPAFLPFATPEMPRPWTGKAPLKSAKEKKMKRKVPLFDSFNPPAPGTKGVKR----- 172

Query: 593  XVMEMAGTPAKLGWYPKDGRSREEILGIPLKKWEIHALIKPILSHNRQVNIGRDGLTHNM 772
              +EM G P  LG  PK G++REEILG PLKKWE+  L++  +S +RQVN+GRDGLTHNM
Sbjct: 173  --VEMPG-PFDLGKRPKPGKTREEILGEPLKKWEVQMLVQEQMSDSRQVNLGRDGLTHNM 229

Query: 773  LELIHSHWRRQQVCKVRCRGVPTVDMNNICLHLEEKTRGKIIHRIGGVLYLFRGRNYDFR 952
            L+LIHSHW+R++VC+V+C+GVPTVDM+NIC H+EE+T GKIIHR+GGV+YLFRGRNY++ 
Sbjct: 230  LDLIHSHWKRRRVCRVKCKGVPTVDMDNICRHIEERTGGKIIHRVGGVVYLFRGRNYNYN 289

Query: 953  TRPKYPIMLWKPATPIYPKLIQEAPEGLTKLEADLLREKGKKLLPICKLARNGIYIKLVK 1132
            TRP+YP+MLWKPA P+YPKLIQEAPEGLTK EA+ LR+KGK+LLPICKLA+NG+YI LV+
Sbjct: 290  TRPQYPLMLWKPAAPVYPKLIQEAPEGLTKAEAEELRKKGKRLLPICKLAKNGVYITLVR 349

Query: 1133 DVRDAFEGSELVKVNCQGMEASDYKRLGAKLKELVPCVLLSFEEEQILMWRGREWKSRYQ 1312
            DVR AFEGS LVK++C+GM ASDYK+LGAKLKELVPCVLLSF++EQILMWRG +W S   
Sbjct: 350  DVRHAFEGSSLVKIDCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGPDWVS--I 407

Query: 1313 GPLRLNTKIQKIEDGESSNLNESGQSSASTSDTAPGIE--IISPKMFSLWKRAVESSQAL 1486
               RL +    +   +   +   G+     + + P  +  I SPKM SLW+R++E+ +AL
Sbjct: 408  SGTRLPSAYSDVY-SDVDIITSKGRVKDDDASSKPDTKTVISSPKMMSLWRRSIETKKAL 466

Query: 1487 LLDDIDLTPDSLLEKIEHFEGLSQAISHSYDALILPTSKD------------PEGSKYSS 1630
            LL+++DL PD+LLEK+E FEG+SQ   HSY ALIL +S+D            P    YS 
Sbjct: 467  LLEELDLDPDALLEKVEEFEGISQVTEHSYPALIL-SSEDGTSNAIQVYEDAPPNGPYS- 524

Query: 1631 EGRFRLEASDVSYDEFGRENKNGEXXXXXXXXXXXXXXXXXXXEIEHSVPFGSLPVDSIA 1810
               +    SD + D++  E+ + +                       SVP GSLP+D IA
Sbjct: 525  --EYEEAYSDDNDDDYVYEDDSDDDALYD----------------SDSVPLGSLPIDVIA 566

Query: 1811 KRLGED 1828
            ++L  D
Sbjct: 567  EKLDHD 572