BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00013746
         (3736 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1365   0.0  
gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobro...  1361   0.0  
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1358   0.0  
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1358   0.0  
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...  1349   0.0  
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]      1343   0.0  
gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare]      1328   0.0  
gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare su...  1326   0.0  
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...  1326   0.0  
ref|XP_004953848.1| PREDICTED: probable RNA-dependent RNA polyme...  1315   0.0  
ref|XP_002454320.1| hypothetical protein SORBIDRAFT_04g028630 [S...  1308   0.0  
gb|EMT27792.1| Putative RNA-dependent RNA polymerase 1 [Aegilops...  1303   0.0  
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps...  1298   0.0  
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A...  1296   0.0  
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1295   0.0  
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1293   0.0  
gb|AAR91037.1| RNA-directed RNA polymerase 2 [Hordeum vulgare su...  1291   0.0  
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1290   0.0  
gb|ACH53360.1| RNA-directed RNA polymerase 1a [Hordeum vulgare]      1287   0.0  
ref|NP_001183933.1| putative RNA-dependent RNA polymerase [Zea m...  1285   0.0  

>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score = 1365 bits (3534), Expect = 0.0
 Identities = 690/1116 (61%), Positives = 850/1116 (76%), Gaps = 11/1116 (0%)
 Frame = -1

Query: 3589 KTFRISGFPSYVTASQVTTFLEKYTFAESIVALKLRPSKNS--RAFAIVQFSKNEDARDL 3416
            KT ++ GFP+ VTA  V  FLE  T   ++ ALKLR  K    R +AIVQF+  E A  +
Sbjct: 3    KTIQVFGFPAGVTAEAVKDFLESKTGGGTVYALKLRTPKKGVGRLYAIVQFTTKEAADTI 62

Query: 3415 I-LMIQQRKLYYNGSYLTLHNVEHDIIPKPRKSMFVLKNVKLYLGCPLSPERLSVLWSVE 3239
            I L  +  KL+Y  SYL    +E D +P+PR  M  +++++L+ GC +S E+ +VLW   
Sbjct: 63   ISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVLWRGV 122

Query: 3238 EVDVKFGFEMRKIDFYLSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAAPKLY 3059
             V V FGF MRKI+F LS+    Y+LEL Y++IWEI+LH    Q +++L+ Q++ AP+++
Sbjct: 123  NVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIF 182

Query: 3058 KESSQNARSIYGDPIYNYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHK 2879
            ++  ++   +Y  P++N+FK+VPDDQWVRT DF+PS+ IGQS  LC+ELPYR +LPD  +
Sbjct: 183  QKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKE 242

Query: 2878 YFFHYKEVDSRYAVENGFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQTL 2699
             F +YKE + R+ +E G +YSR+LDLVPIV PP GI + YEILFKIN +VQNG + G  L
Sbjct: 243  NFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLL 302

Query: 2698 DREFYNLVCPCPSRPN-AYIERALEMMSVMDFSCFAPAKWLIEQYAKF--SRSKHINSPT 2528
            D  FY LV P  +  + + IE AL+ +  +   C+ P++WL +QY K+  SRSK  +SP 
Sbjct: 303  DSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKP-SSPA 361

Query: 2527 ISLDSDSGLVYVHRVQVTPSKVFFYGPEINVSNRVLRHYDEVVDDFLRISFVDEDREKMH 2348
            ISLD   GLVYVHRVQVTPS+V+F GPEINVSNRVLRH+   +D+FLRISF+DED +K+H
Sbjct: 362  ISLDD--GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIH 419

Query: 2347 SNHILERAVSVGSERRTALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSN 2168
            S  +  R  S     RT +Y RILS L+NGI IG +KFEFLAFSSSQLRE+SAWMFAS  
Sbjct: 420  STDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY 479

Query: 2167 MFCAGSIREWMGDFRRIRNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIE----QSGY 2000
               A  IREWMG+FR IRNVAKYAARLGQSFSSS ETLSV   E ++IPD++    ++ Y
Sbjct: 480  GLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKY 539

Query: 1999 VFSDGIGKISAEFAKKVAAKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSK 1820
            VFSDGIGK+SAEFA+KVA+KC LK + PSAFQIRY GYKGVVA DPTSS KLSLR SM K
Sbjct: 540  VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRK 599

Query: 1819 FESKNTKLDVLAYSKYQPCFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERA 1640
            +ES+ TKLDVLA+SKYQPCFLNRQLI+LLSTLGI D IFEKK  EAV  LD ILTDP +A
Sbjct: 600  YESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKA 659

Query: 1639 LEAVQLMHPGETANMLRELLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRA 1460
             EA++LM PGE  N+L+ELL+CGYKPDAEPF+SM+LQ FRAS+LLELRTK RIF+P GR+
Sbjct: 660  QEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRS 719

Query: 1459 MIGCLDESRSLKYGQVFVQVSCFENSRFHN-NGLFFFNREHPAVVLEGKIIVAKNPCLHP 1283
            M+GCLDE+R+L YGQVFVQ+S     + H  + LF  +R     +++G ++VAKNPCLHP
Sbjct: 720  MMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 779

Query: 1282 GDVRILEAVNVPHLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAE 1103
            GDVR+L+AVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD EL+P +   
Sbjct: 780  GDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP 839

Query: 1102 PMEYAPAPTMELDHDVTIEEVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKL 923
            PM+Y PA +M+LDHDV IE+V EYFTNYIVNDSLGIIANAHTVFAD+   KA    CL+L
Sbjct: 840  PMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKARSEPCLQL 899

Query: 922  AKLFSIAVDFPKTGVPAEIPPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDC 743
            A+ FSIAVDFPKTGVPAEIPP L VKEYPDFMEK D+ TYES+ +IGKL+RA+K+  P  
Sbjct: 900  AEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHT 959

Query: 742  VQIKTFTKQVAVQSYDADMEVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISG 563
              I+ FTK+VA +SYD DMEVDGFE+H++DA + KG YD+KLGNLMD+YGIKTEAEI++G
Sbjct: 960  SCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTG 1019

Query: 562  NIMKMSKIFTKNRDAEAIGRAVKVLRKEARSWFKDKHSXXXXXXXXXNAKASAWYYVTYH 383
            +IMKMSK FTK RDAEAIG AV+ LRKEAR+WFK+K            AKASAWY+VTYH
Sbjct: 1020 SIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSG--SDTEDDAYAKASAWYHVTYH 1077

Query: 382  HSYWGCYNEGLKRPHFLSFPWCVYDKLTQIKQKKIS 275
              YWGCYN G+ R HFLSFPWCVYD+L +IK+ K S
Sbjct: 1078 PDYWGCYNHGMNRDHFLSFPWCVYDRLVEIKKDKTS 1113


>gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
            gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
            1 isoform 1 [Theobroma cacao] gi|508709489|gb|EOY01386.1|
            RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
            cacao]
          Length = 1109

 Score = 1361 bits (3522), Expect = 0.0
 Identities = 693/1131 (61%), Positives = 853/1131 (75%), Gaps = 6/1131 (0%)
 Frame = -1

Query: 3589 KTFRISGFPSYVTASQVTTFLEKYTFAESIVALKLRPSKNS-RAFAIVQFSKNEDARDLI 3413
            KT ++S FPS V A +V TFLE YT  E++ ALK+R  KN  RA+AIVQF+K+ DA +LI
Sbjct: 3    KTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQKNGGRAYAIVQFTKSTDA-ELI 61

Query: 3412 LMIQQRKLYYNGSYLTLHNVEHDIIPKPRKSMFVLKNVKLYLGCPLSPERLSVLWSVEEV 3233
            + +  ++LYY  SYL    +E+DI+PKPR  +  ++ V L+ GC +S E+  VLW   +V
Sbjct: 62   IRLTNQRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWEEVDV 121

Query: 3232 DVKFGFEMRKIDFYLSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAAPKLYKE 3053
             V FG  MRK+ F LS+    Y+L+L Y++IW+I+LHR  +Q S++L+ Q+  AP++Y++
Sbjct: 122  TVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPRIYEK 181

Query: 3052 SSQNARSIYGDPIYNYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHKYF 2873
              +++  ++ +P+ NYF DVPDDQWVRT DF+ SS IGQS  LCLELPY   LP+  + F
Sbjct: 182  DVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLPNFRENF 241

Query: 2872 FHYKEVDSRYAVENGFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQTLDR 2693
             +YKE + ++ +E+G SYSRNL+LVPIV P  GI++ YEILFKIN +VQNG + G  LD 
Sbjct: 242  AYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGPALDA 301

Query: 2692 EFYNLVCPCPSRPNAYIERALEMMSVMDFSCFAPAKWLIEQYAKFSRSK-HINSPTISLD 2516
             FY LV PC      YI+ ALE +  +   CF P+KWL+EQY  +  SK +  SP ISLD
Sbjct: 302  NFYRLVNPCRI-DKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPVISLD 360

Query: 2515 SDSGLVYVHRVQVTPSKVFFYGPEINVSNRVLRHYDEVVDDFLRISFVDEDREKMHSNHI 2336
               GLV V RVQ+TPS+V+F GPEINVSNRVLRH+ + +D+FLRI+FVDE+ EK+HS  +
Sbjct: 361  D--GLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHSTDL 418

Query: 2335 LERAVSVGSERRTALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMFCA 2156
            L R       R T +Y RILS LKNGI IG K+FEFLAFSSSQLRENSAWMFAS     A
Sbjct: 419  LTR------NRITEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGLTA 472

Query: 2155 GSIREWMGDFRRIRNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIEQS----GYVFSD 1988
              IR WMG+F +IRNVAKYAARLGQSFSSSTETLSV   E ++I D+E       YVFSD
Sbjct: 473  ADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRDGINYVFSD 532

Query: 1987 GIGKISAEFAKKVAAKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFESK 1808
            GIGKISA+FAKKVAAKCRL G  PSAFQIR  G+KGVVAVDPTSS KLSLR SMSK+ES+
Sbjct: 533  GIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYESE 592

Query: 1807 NTKLDVLAYSKYQPCFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALEAV 1628
            NTKLDVLA+SKYQPCFLNRQLITLLSTLG+ D  FE+K  E V  L+ ILTDP +A EA+
Sbjct: 593  NTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQEAL 652

Query: 1627 QLMHPGETANMLRELLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMIGC 1448
            +LM PGE  N+L+E+LLCGY+PDAEPF+SM+LQ FRAS+LLELRTK+RIFV  GR+M+GC
Sbjct: 653  ELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMMGC 712

Query: 1447 LDESRSLKYGQVFVQVSCFENSRFHNNGLFFFNREHPAVVLEGKIIVAKNPCLHPGDVRI 1268
            LDE+R+L YGQVFVQVS               +R     +++GK++VAKNPCLHPGDVR+
Sbjct: 713  LDETRTLDYGQVFVQVSG--------------SRSEQRFIVQGKVVVAKNPCLHPGDVRV 758

Query: 1267 LEAVNVPHLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEPMEYA 1088
            L AVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WDPEL+P++   PM+Y+
Sbjct: 759  LTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQIPPMDYS 818

Query: 1087 PAPTMELDHDVTIEEVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLAKLFS 908
            PAPT  L+H+VTIEEV EYFTNYIVNDSLGIIANAHTVFAD+   KA   EC  LAKLFS
Sbjct: 819  PAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSECKWLAKLFS 878

Query: 907  IAVDFPKTGVPAEIPPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCVQIKT 728
            IAVDFPKTGVPAEIP  L+VKEYPDFMEK D+ TY+S  +IGKL+R +K+  P+   I++
Sbjct: 879  IAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDLAPNECFIRS 938

Query: 727  FTKQVAVQSYDADMEVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGNIMKM 548
             T++   + YD DMEVDG+E++++DAF+ K  YD+KLGNLM++YGIKTEAEI+SG IMKM
Sbjct: 939  LTRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIKTEAEILSGGIMKM 998

Query: 547  SKIFTKNRDAEAIGRAVKVLRKEARSWFKDKHSXXXXXXXXXNAKASAWYYVTYHHSYWG 368
            S+ FTK RDAEAIG AV+ LRKEARSWF +K +          AKASAWY+VTYH SYWG
Sbjct: 999  SRSFTKQRDAEAIGVAVRSLRKEARSWFNEKGNGLDSEADDLYAKASAWYHVTYHPSYWG 1058

Query: 367  CYNEGLKRPHFLSFPWCVYDKLTQIKQKKISQRKTASQVSLLQNRMRGLQI 215
             YNEG+ R HFLSFPWCVYDKL  IK KK++ R+ +   SL     RGL++
Sbjct: 1059 LYNEGMNRNHFLSFPWCVYDKLILIK-KKVTSRRNSRLSSLESLFARGLRL 1108


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1358 bits (3515), Expect = 0.0
 Identities = 693/1131 (61%), Positives = 845/1131 (74%), Gaps = 6/1131 (0%)
 Frame = -1

Query: 3589 KTFRISGFPSYVTASQVTTFLEKYTFAESIVALKLRPSKNS-RAFAIVQFSKNEDARDLI 3413
            KT ++ GF S V+A +V TFLE YT  E++ ALK+R  K S RAFAIVQF+++ DA  LI
Sbjct: 3    KTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSGRAFAIVQFTRSSDA-GLI 61

Query: 3412 LMIQQRKLYYNGSYLTLHNVEHDIIPKPRKSMFVLKNVKLYLGCPLSPERLSVLWSVEEV 3233
            + +  ++LYY  SYL    +E DI+PKPR  +  ++ V +  GC +S E+  VLW  + V
Sbjct: 62   IRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWKADNV 121

Query: 3232 DVKFGFEMRKIDFYLSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAAPKLYKE 3053
             + FG  MRK++F LSY S  YKLEL Y++IW+I+L   +SQ S+ L+ Q+  AP++Y++
Sbjct: 122  TLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRIYEK 181

Query: 3052 SSQNARSIYGDPIYNYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHKYF 2873
                +  ++ DP+ NYFKD+PDDQWVRT DF+ S+ IGQS  L LELP+   LP+  + F
Sbjct: 182  EVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNFRENF 241

Query: 2872 FHYKEVDSRYAVENGFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQTLDR 2693
             +YKE + R  +E+G SYS NL LVPIV P   I++ +EILFK+N +VQNG + G  LD 
Sbjct: 242  AYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPALDD 301

Query: 2692 EFYNLVCPCPSRPNAYIERALEMMSVMDFSCFAPAKWLIEQYAKFSRS-KHINSPTISLD 2516
             FY LV PC      YI+ ALE +  +   C+ P++WL E+Y  FSRS K+  SPTISLD
Sbjct: 302  TFYRLVDPCRMH-KVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISLD 360

Query: 2515 SDSGLVYVHRVQVTPSKVFFYGPEINVSNRVLRHYDEVVDDFLRISFVDEDREKMHSNHI 2336
               GLVYV RVQ+TPS+V+F GPEINVSNRVLR +   +D+FLRISFVDE+ EK+HS ++
Sbjct: 361  E--GLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNV 418

Query: 2335 LERAVSVGSERRTALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMFCA 2156
              R       RRT +Y RILS L+NGI IG+K+FEFLAFSSSQLRENSAWMFAS     A
Sbjct: 419  QARG------RRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTA 472

Query: 2155 GSIREWMGDFRRIRNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIE--QSG--YVFSD 1988
              IR WMG+F +IRNVAKYAARLGQSFSSSTETLSV   E  LIPDIE  + G  YVFSD
Sbjct: 473  ADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFSD 532

Query: 1987 GIGKISAEFAKKVAAKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFESK 1808
            GIGKISAEFAKKVAAKCRLKG  PSAFQIR  G+KGVVA+DPTSS KLSLRKSM K+ES+
Sbjct: 533  GIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESE 592

Query: 1807 NTKLDVLAYSKYQPCFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALEAV 1628
            NTKLDVLA+SKYQPCFLNRQLITLLSTLG+ D  FEKK  E V  L+ +LTDP  A EA+
Sbjct: 593  NTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQEAL 652

Query: 1627 QLMHPGETANMLRELLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMIGC 1448
            +LM PGE  N+L+E+LLCGYKPDAEPF+SM+L+ FRAS+LLELRTKARIFV KGR+M+GC
Sbjct: 653  ELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGC 712

Query: 1447 LDESRSLKYGQVFVQVSCFENSRFHNNGLFFFNREHPAVVLEGKIIVAKNPCLHPGDVRI 1268
            LDE+R+L YGQVFVQ              F  +R     +++GK+IVAKNPCLHPGDVR+
Sbjct: 713  LDETRTLNYGQVFVQ--------------FSGSRSERRFIVQGKVIVAKNPCLHPGDVRV 758

Query: 1267 LEAVNVPHLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEPMEYA 1088
            L AVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WDPEL+P +  +PM+Y+
Sbjct: 759  LRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYS 818

Query: 1087 PAPTMELDHDVTIEEVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLAKLFS 908
            PA T +LDH+VTIEE+ EYFTNYIVNDSLGII+NAHT FAD+   KA    CL+LAKLFS
Sbjct: 819  PASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLELAKLFS 878

Query: 907  IAVDFPKTGVPAEIPPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCVQIKT 728
            IAVDFPKTGVPAEIP  L+VKEYPDFMEK D+ +Y+S  +IGKL+R +K   P+   IK 
Sbjct: 879  IAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNECSIKF 938

Query: 727  FTKQVAVQSYDADMEVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGNIMKM 548
             T++   + YD DMEV+GFE++++DAFF K +YD+KLGNLMD+YG+KTEAEI+ G IMKM
Sbjct: 939  LTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGGGIMKM 998

Query: 547  SKIFTKNRDAEAIGRAVKVLRKEARSWFKDKHSXXXXXXXXXNAKASAWYYVTYHHSYWG 368
            S+ FTK RDAEAI  AV+ LRKEARSWF +K S          AKASAWYYVTYH SYWG
Sbjct: 999  SRSFTKKRDAEAISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHPSYWG 1058

Query: 367  CYNEGLKRPHFLSFPWCVYDKLTQIKQKKISQRKTASQVSLLQNRMRGLQI 215
             YNEG+ R HFLSFPWCVYDKL QIK++K + R+     SL     RGL +
Sbjct: 1059 QYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEHRFQRGLHL 1109


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1358 bits (3514), Expect = 0.0
 Identities = 690/1131 (61%), Positives = 845/1131 (74%), Gaps = 6/1131 (0%)
 Frame = -1

Query: 3589 KTFRISGFPSYVTASQVTTFLEKYTFAESIVALKLRPSKNS-RAFAIVQFSKNEDARDLI 3413
            KT ++ GF S V+A +V TFLE YT  E++ ALK+R  K S RAFAIVQF+++ DA  LI
Sbjct: 3    KTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSGRAFAIVQFTRSSDA-GLI 61

Query: 3412 LMIQQRKLYYNGSYLTLHNVEHDIIPKPRKSMFVLKNVKLYLGCPLSPERLSVLWSVEEV 3233
            + +  ++LYY  SYL    +E DI+PKPR  +  ++ V +   C +S E+  VLW  + V
Sbjct: 62   IRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWKADNV 121

Query: 3232 DVKFGFEMRKIDFYLSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAAPKLYKE 3053
             + FG  MRK++F LSY S  YKLEL Y++IW+I+L   +SQ S+ L+ Q+  AP++Y++
Sbjct: 122  TLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRIYEK 181

Query: 3052 SSQNARSIYGDPIYNYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHKYF 2873
                +  ++ DP+ NYFKD+PDDQWVRT DF+ S+ IGQS  LCLELP+   LP+  + F
Sbjct: 182  EVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNFRENF 241

Query: 2872 FHYKEVDSRYAVENGFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQTLDR 2693
             +YKE + R  +E+G SYS NL LVPIV P   I++ +EILFK+N +VQNG + G  LD 
Sbjct: 242  AYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPALDD 301

Query: 2692 EFYNLVCPCPSRPNAYIERALEMMSVMDFSCFAPAKWLIEQYAKFSRS-KHINSPTISLD 2516
             FY LV PC      YI+ ALE +  +   C+ P++WL E+Y  FSRS K+  SPTISLD
Sbjct: 302  TFYRLVDPCRMH-KVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISLD 360

Query: 2515 SDSGLVYVHRVQVTPSKVFFYGPEINVSNRVLRHYDEVVDDFLRISFVDEDREKMHSNHI 2336
               GLVYV RVQ+TPS+V+F GPEINVSNRVLR +   +D+FLRISFVDE+ EK+HS ++
Sbjct: 361  E--GLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNV 418

Query: 2335 LERAVSVGSERRTALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMFCA 2156
              R       RRT +Y RILS L+NGI IG+K+FEFLAFSSSQLRENSAWMFAS     A
Sbjct: 419  QARG------RRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTA 472

Query: 2155 GSIREWMGDFRRIRNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIE--QSG--YVFSD 1988
              IR WMG+F +IRNVAKYAARLGQSFSSSTETLSV   E  LIPDIE  + G  YVF D
Sbjct: 473  ADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFPD 532

Query: 1987 GIGKISAEFAKKVAAKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFESK 1808
            GIGKISAEFAKKVAAKCRLKG  PSAFQIR  G+KGVVA+DPTSS KLSLRKSM K+ES+
Sbjct: 533  GIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESE 592

Query: 1807 NTKLDVLAYSKYQPCFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALEAV 1628
            NTKLDVLA+SKYQPCFLNRQLITLLSTLG+ D  FEKK  E V  L+ +LTDP  A EA+
Sbjct: 593  NTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQEAL 652

Query: 1627 QLMHPGETANMLRELLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMIGC 1448
            +LM PGE  N+L+E+LLCGYKPDAEPF+SM+L+ FRAS+LLELRTKARIFV KGR+M+GC
Sbjct: 653  ELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGC 712

Query: 1447 LDESRSLKYGQVFVQVSCFENSRFHNNGLFFFNREHPAVVLEGKIIVAKNPCLHPGDVRI 1268
            LDE+R+L YGQVFVQ              F  +R     +++GK+IVAKNPCLHPGDVR+
Sbjct: 713  LDETRTLNYGQVFVQ--------------FSGSRSERRFIVQGKVIVAKNPCLHPGDVRV 758

Query: 1267 LEAVNVPHLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEPMEYA 1088
            L AVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFV WDPEL+P +  +PM+Y+
Sbjct: 759  LRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYS 818

Query: 1087 PAPTMELDHDVTIEEVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLAKLFS 908
            PA T +LDH+VTIEE+ EYFTNYIVNDSLGII+NAHT FAD+   KA    CL+LAKLFS
Sbjct: 819  PASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLELAKLFS 878

Query: 907  IAVDFPKTGVPAEIPPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCVQIKT 728
            IAVDFPKTGVPAEIP  L+VKE+PDFMEK D+ +Y+S  +IGKL+R +K   P+   IK 
Sbjct: 879  IAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNECSIKL 938

Query: 727  FTKQVAVQSYDADMEVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGNIMKM 548
             T++   + YD DMEV+GF ++++DAFF+K +YD+KLGNLMD+YG+KTEAEI+SG IMKM
Sbjct: 939  LTREKMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSGGIMKM 998

Query: 547  SKIFTKNRDAEAIGRAVKVLRKEARSWFKDKHSXXXXXXXXXNAKASAWYYVTYHHSYWG 368
            S+ FTK RDAE+I  AV+ LRKEARSWF +K S          AKASAWYYVTYHHSYWG
Sbjct: 999  SRSFTKKRDAESISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHHSYWG 1058

Query: 367  CYNEGLKRPHFLSFPWCVYDKLTQIKQKKISQRKTASQVSLLQNRMRGLQI 215
             YNEG+ R HFLSFPWCVYDKL QIK++K + R+     SL     RG  +
Sbjct: 1059 QYNEGMNRDHFLSFPWCVYDKLIQIKKEKAALREALDLSSLEHRFQRGFHL 1109


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score = 1349 bits (3491), Expect = 0.0
 Identities = 677/1138 (59%), Positives = 849/1138 (74%), Gaps = 12/1138 (1%)
 Frame = -1

Query: 3592 SKTFRISGFPSYVTASQVTTFLEKYTFAESIVALKLRPSKN--SRAFAIVQFSKNEDARD 3419
            SKT ++SGFPS  TA  V  FLE +T   ++ ALK+R  +   +R +AIVQF+    A  
Sbjct: 2    SKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGARKYAIVQFTTTRAAEQ 61

Query: 3418 LILMIQQRKLYYNGSYLTLHNVEHDIIPKPRKSMFVLKNVKLYLGCPLSPERLSVLWSVE 3239
            +I +   R L+Y  SYL    ++ DIIP+PR  +  +++V L+ G   S E+ S +WS  
Sbjct: 62   IISLANPR-LWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSGN 120

Query: 3238 EVDVKFGFEMRKIDFYLSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAAPKLY 3059
             V V FG  MRK+ F+LS+    YKL L +++IW+I+LHR   Q  ++L+ Q+  AP++Y
Sbjct: 121  NVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIY 180

Query: 3058 KESSQNARSIYGDPIYNYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHK 2879
            +    ++ +++ DP+ NYF+DVPD+QWVRT DF+PS  IG S +LCLELP    LP+ ++
Sbjct: 181  ERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFNE 240

Query: 2878 YFFHYKEVDSRYAVENGFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQTL 2699
             FF+YKE +  + +E+G ++SRN DLVPIV P SG+ + Y ILF++N +VQNG L G  L
Sbjct: 241  NFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSML 300

Query: 2698 DREFYNLVCPCPSRPNAYIERALEMMSVMDFSCFAPAKWLIEQYAKFSRSKHI-NSPTIS 2522
            D  FY LV P    P   IE ALE +  +   C+ P+KW  EQY K+  S +   SP +S
Sbjct: 301  DDIFYRLVDP-NRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLS 359

Query: 2521 LDSDSGLVYVHRVQVTPSKVFFYGPEINVSNRVLRHYDEVVDDFLRISFVDEDREKMHSN 2342
            LD+  GLVYV++VQ+TP KVFF GPE+NVSNRVLR Y E +D+FLR+SFVDE+ EK+HS 
Sbjct: 360  LDA--GLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHST 417

Query: 2341 HILERAVSVGSERRTALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMF 2162
             +  R  S    RRTA+Y RILS L+NGI IG KKFEFLAFSSSQLRENS WMFAS    
Sbjct: 418  DVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGL 477

Query: 2161 CAGSIREWMGDFRRIRNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIEQSG----YVF 1994
             A  IR WMG F +IRNVA+YAARLGQSF SSTETLSV SHE ++IPDIE S     Y+F
Sbjct: 478  TAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLF 537

Query: 1993 SDGIGKISAEFAKKVAAKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFE 1814
            SDGIGKISAEFA+KVA KC  KG  PSAFQIRYAGYKGVVAVDPTSS KLSLR+SM K+E
Sbjct: 538  SDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYE 597

Query: 1813 SKNTKLDVLAYSKYQPCFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALE 1634
            S+NTKLDVLA+SKYQPCFLNRQLITLLSTLG+ D  FE+K  EAV  LD +LTDP RA E
Sbjct: 598  SENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQE 657

Query: 1633 AVQLMHPGETANMLRELLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMI 1454
            A++LM PGE  N+L+E+LLCGY+PDAEPF+SM+LQ FRAS+LLELRTK RIF+P GR+M+
Sbjct: 658  ALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 717

Query: 1453 GCLDESRSLKYGQVFVQVSCFENSRFHN----NGLFFFNREHPAVVLEGKIIVAKNPCLH 1286
            GCLDE+R+L++GQVFV+   F  SRF N    + +F         +++G ++VAKNPCLH
Sbjct: 718  GCLDETRTLEHGQVFVK---FSGSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLH 774

Query: 1285 PGDVRILEAVNVPHLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMA 1106
            PGD+RIL+AV+VP LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WDPEL+P++  
Sbjct: 775  PGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQI 834

Query: 1105 EPMEYAPAPTMELDHDVTIEEVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLK 926
             PM+Y P P ++LDHDVTIEEV EYFTNYIVNDSLG+IANAHT  ADK  LKA    C++
Sbjct: 835  SPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVE 894

Query: 925  LAKLFSIAVDFPKTGVPAEIPPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPD 746
            LA+ FSIAVDFPKTGVPAEIP  L+ +EYPDFMEK D+ +YES+ +IGKL+R +K+  P 
Sbjct: 895  LARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPR 954

Query: 745  CVQIKTFTKQVAVQSYDADMEVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIIS 566
               I++FT  VA Q YD DMEVDGFE++++DAF++K  YD+KLGNLM++YGIKTEAE++S
Sbjct: 955  TSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLS 1014

Query: 565  GNIMKMSKIFTKNRDAEAIGRAVKVLRKEARSWFKDKHSXXXXXXXXXNAKASAWYYVTY 386
            G+ MKMSK FTK RDAEAIG AV+ L+KEARSWF +K S         +AKASAWY+VTY
Sbjct: 1015 GSFMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTY 1074

Query: 385  HHSYWGCYNEGLKRPHFLSFPWCVYDKLTQIKQKKISQ-RKTASQVSLLQNRMRGLQI 215
            HH+YWGCYNEG+ R HFLSFPWCVYDKL QIK++  ++ R++    S+ +   RGL +
Sbjct: 1075 HHNYWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVERQFSRGLHL 1132


>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 1133

 Score = 1343 bits (3477), Expect = 0.0
 Identities = 680/1134 (59%), Positives = 849/1134 (74%), Gaps = 8/1134 (0%)
 Frame = -1

Query: 3589 KTFRISGFPSYVTASQVTTFLEKYTFAESIVALKLRPSKN--SRAFAIVQFSKNEDARDL 3416
            KT ++SGFPS+V+A  V  FLE +T   ++ A+K+RP+KN  SR++AIVQF   E A +L
Sbjct: 3    KTIQLSGFPSHVSAESVKEFLEGHTGRGTVYAIKIRPTKNGGSRSYAIVQFMTVETA-EL 61

Query: 3415 ILMIQQRKLYYNGSYLTLHNVEHDIIPKPRKSMFVLKNVKLYLGCPLSPERLSVLWSVEE 3236
            I+ +   +L+Y  SYL    +E DI+PKPR +++ L+NV L+ GC +S E+ S LW V  
Sbjct: 62   IIRLANPRLWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWRVGN 121

Query: 3235 VDVKFGFEMRKIDFYLSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAAPKLYK 3056
            V V FG  +R+++FYL+YG   Y+L+L Y+++W+I+LHR   Q +++L+ Q++ AP++Y+
Sbjct: 122  VSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPRVYE 181

Query: 3055 ESSQNARSIYGDPIYNYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHKY 2876
            +  + +  I  +P++NYFKD PDDQWVR  DF+ S  IG S AL LELPY  DLPD+ + 
Sbjct: 182  KEVRISFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLPDLREN 241

Query: 2875 FFHYKEVDSRYAVENGFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQTLD 2696
            F +YKE + R+ +E+G S+SRNLDLVPIV PPSGI + +E +FKIN ++QNG L G TLD
Sbjct: 242  FVYYKESEERFILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQNGCLSGPTLD 301

Query: 2695 REFYNLVCPCPSRPNAYIERALEMMSVMDFSCFAPAKWLIEQYAKF-SRSKHINSPTISL 2519
             +FY LV P   R    I  ALE +  +    + PA WL EQY K+ +  +    P I+L
Sbjct: 302  VDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPKPPAIAL 361

Query: 2518 DSDSGLVYVHRVQVTPSKVFFYGPEINVSNRVLRHYDEVVDDFLRISFVDEDREKMHSNH 2339
            DS  GLVYV RVQVTPSKV+F GPEINVSNRVLR Y + +D FLR+SFVDE+ EK+ S  
Sbjct: 362  DS--GLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKLFSTD 419

Query: 2338 ILERAVSVGSERRTALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMFC 2159
            +  R  +   +RRT +Y RILS+L+NGI IG +KFEFLAFSSSQLR+NS WMFA+ +   
Sbjct: 420  LSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAVDGHS 479

Query: 2158 AGSIREWMGDFRRIRNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIE-QSG---YVFS 1991
            A +IR+W+GDFR IRNVAKYAARLGQSF SSTETL+V+  E ++I DIE + G   YVFS
Sbjct: 480  ADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEVISDIEIERGAVKYVFS 539

Query: 1990 DGIGKISAEFAKKVAAKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFES 1811
            DGIGKIS+ FAK+VA KC LK  VPSAFQIRY GYKGVVAVDPTSS KLSLRKSM K+ES
Sbjct: 540  DGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKLSLRKSMWKYES 599

Query: 1810 KNTKLDVLAYSKYQPCFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALEA 1631
            +  KLDVLAYSK Q C+LNRQLITLLSTLG+ D +FEKK  EAV  L+ IL DP RA EA
Sbjct: 600  ELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNAILNDPLRAREA 659

Query: 1630 VQLMHPGETANMLRELLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMIG 1451
            + LM  GET N+L+ELL CGY+P+AEPF+SM+LQAFRAS+L ELRTK RI +P GRAM+G
Sbjct: 660  LDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTRISIPDGRAMMG 719

Query: 1450 CLDESRSLKYGQVFVQVSCFENSRFHNNGLFFFNR-EHPAVVLEGKIIVAKNPCLHPGDV 1274
            CLDE R+L+YG+VFVQ S   +  F  +             ++ G+++VAKNPCLHPGDV
Sbjct: 720  CLDEMRTLEYGEVFVQFSGITHRPFFEDSFMLGGTGSGQNYIVVGRVVVAKNPCLHPGDV 779

Query: 1273 RILEAVNVPHLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEPME 1094
            R+L AVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD EL+P +  EPM+
Sbjct: 780  RVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDDELIPQKQFEPMD 839

Query: 1093 YAPAPTMELDHDVTIEEVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLAKL 914
            Y+PAPT  LDHDV IEEV EYFTNYIVNDSLGIIANAHT FADK   KA    C++LA+L
Sbjct: 840  YSPAPTTRLDHDVRIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPSKAMSPSCIELARL 899

Query: 913  FSIAVDFPKTGVPAEIPPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCVQI 734
            FSIAVDFPKTGVPA IP  L VKEYPDFMEK ++ TYES+ +IGKL+R +K+  P+   +
Sbjct: 900  FSIAVDFPKTGVPAVIPQELYVKEYPDFMEKLNKPTYESQNVIGKLFREVKDIAPNVGSL 959

Query: 733  KTFTKQVAVQSYDADMEVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGNIM 554
              FTK+VA +SYD DME DGFE++++DAF++K  YD+KLGNL+D+YGIK+EAEII G+IM
Sbjct: 960  HFFTKEVASRSYDPDMEYDGFEDYIDDAFYYKSNYDYKLGNLLDYYGIKSEAEIIGGSIM 1019

Query: 553  KMSKIFTKNRDAEAIGRAVKVLRKEARSWFKDKHSXXXXXXXXXNAKASAWYYVTYHHSY 374
            +MSK FTK RDAE+I  AV+ LRKEAR+WF +K S          AKASAWYYVTYHHSY
Sbjct: 1020 RMSKSFTKRRDAESINMAVRALRKEARTWFNEKGSSLDSAADDVYAKASAWYYVTYHHSY 1079

Query: 373  WGCYNEGLKRPHFLSFPWCVYDKLTQIKQKKISQRKTASQVSLLQNRMRGLQIG 212
            WGCYNEG+ R H+LSFPWCVYDKL QIK+ K S R++    SL +   R L +G
Sbjct: 1080 WGCYNEGMNRDHYLSFPWCVYDKLVQIKRSKASVRRSLQMSSLERAFDRRLHLG 1133


>gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare]
          Length = 1115

 Score = 1328 bits (3437), Expect = 0.0
 Identities = 690/1132 (60%), Positives = 838/1132 (74%), Gaps = 8/1132 (0%)
 Frame = -1

Query: 3598 MSSKTFRISGFPSYVTASQVTTFLEKYTFAESIVALKLRPSKN----SRAFAIVQFSKNE 3431
            M  KT ++SGFPS V A  V   LE+     ++ A+KLRP KN    SR+FAIVQF    
Sbjct: 1    MGGKTLQVSGFPSTVNADHVKDLLEQIVGTGNVFAVKLRPPKNISANSRSFAIVQFQSEA 60

Query: 3430 DARDLILMIQQRKLYYNGS-YLTLHNVEHDIIPKPRKSMFVLKNVKLYLGCPLSPERLSV 3254
             A  L+L   QR    +GS YL     E DI+P+PR ++F L+  KL+ GC L    LSV
Sbjct: 61   HA-SLVLNAAQRNALRSGSHYLKARYAERDIVPRPRTTIFNLQGAKLHFGCLLKERVLSV 119

Query: 3253 LWSVEEVDVKFGFEMRKIDFYLSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVA 3074
            LWS   V V+FGF M++IDF L Y S  YKLEL+Y+SIWEIQLHR    + +FL+ QV A
Sbjct: 120  LWSGTNVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLLIQVQA 179

Query: 3073 APKLYKESSQNARSIYGDPIYNYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDL 2894
            APK+Y+++ + + S+Y DP++NYF+D  DDQW RT DF+PS+SIGQS  LCLELP+   L
Sbjct: 180  APKIYEQNIRLSGSMYDDPLFNYFRDDTDDQWTRTTDFTPSASIGQSYILCLELPHICYL 239

Query: 2893 PDIHKYFFHYKEVDSRYAVENGFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGIL 2714
            P+I +YF +Y+  +  + ++ G+SYS N   VP+V+     +V YEILFKIN++VQNG L
Sbjct: 240  PNIREYFVYYEVHNDIFNLQPGYSYSSNTCFVPVVKSHYFTDVPYEILFKINHLVQNGTL 299

Query: 2713 IGQTLDREFYNLVCPCPSRPNAYIERALEMMSVMDFSCFAPAKWLIEQYAKFSRSKHINS 2534
             G TLD  FY LV P   R +  I+RALE MS +  +C  P  WL EQY K  RS+ + S
Sbjct: 300  SGPTLDDNFYRLVSPGYERIDR-IKRALEKMSYLKKTCLNPTNWLSEQYKKMRRSRVLTS 358

Query: 2533 PTISLDSDSGLVYVHRVQVTPSKVFFYGPEINVSNRVLRHYDEVVDDFLRISFVDEDREK 2354
            P I+LD D GLVYV+RVQ+TP+KV+FYGPEINVSNRV+R+Y   +D+FLRISFVDED EK
Sbjct: 359  PNITLDDD-GLVYVYRVQITPAKVYFYGPEINVSNRVVRNYAADLDNFLRISFVDEDCEK 417

Query: 2353 MHSNHILERAVSVGSERRTALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFAS 2174
            + S  + +R+    + RRTALY R+LS+L NGITIG K F+FLAFSSSQLR+NSAWMFAS
Sbjct: 418  LRSTDLSQRSAPGNNTRRTALYNRVLSVLSNGITIGDKHFDFLAFSSSQLRDNSAWMFAS 477

Query: 2173 SNMFCAGSIREWMGDFRRIRNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIEQ-SGYV 1997
                 A  IREWMG+FR IRNVAKYAARLGQSFSSSTETL V  +E +  PD+   + YV
Sbjct: 478  RPGLSASDIREWMGNFRNIRNVAKYAARLGQSFSSSTETLKVHKYEVKEAPDVTNGTEYV 537

Query: 1996 FSDGIGKISAEFAKKVAAKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKF 1817
            FSDGIG ISA+FA +V+ KC L    PSAFQIRY GYKGVVA+DPTS  KLSLRKSMSKF
Sbjct: 538  FSDGIGTISADFADEVSKKCNLTRFTPSAFQIRYGGYKGVVAIDPTSQWKLSLRKSMSKF 597

Query: 1816 ESKNTKLDVLAYSKYQPCFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERAL 1637
            +S N  LDVLAYSKYQPCFLNRQLITLLSTLG+ID IFE K +EAV  L+ ++ +P+ A+
Sbjct: 598  QSDNITLDVLAYSKYQPCFLNRQLITLLSTLGVIDSIFELKQQEAVQQLNRMVAEPQAAI 657

Query: 1636 EAVQLMHPGETANMLRELLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAM 1457
            +A++LM  GE  N+++ELLLCGY+PD EP+VSMLLQ FRAS+LLEL+T++RIFVPKGRAM
Sbjct: 658  DAIELMPMGEITNIVKELLLCGYRPDVEPYVSMLLQTFRASKLLELKTRSRIFVPKGRAM 717

Query: 1456 IGCLDESRSLKYGQVFVQVSCFENSRFHNNGLFFFNREHPAVVLEGKIIVAKNPCLHPGD 1277
            +GCLDE+R+LKYGQVF+Q S   + R  +             V+ GK+IVAKNPC+HPGD
Sbjct: 718  MGCLDETRTLKYGQVFIQASNSADDRGKS-------------VVTGKVIVAKNPCIHPGD 764

Query: 1276 VRILEAVNVPHLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEPM 1097
            +RIL+AV+ P L HMV+CVVFPQ G RPHPNECSGSDLDGDIYFVSWDP+L+P RM  PM
Sbjct: 765  IRILQAVHSPLLGHMVNCVVFPQLGPRPHPNECSGSDLDGDIYFVSWDPDLIPTRMVAPM 824

Query: 1096 EYAPAPTMELDHDVTIEEVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLAK 917
            +Y PAPT  LDHDV IEEV EYFTNYIVN+SLGIIANAH VFAD+  LKAE  +C+KLA+
Sbjct: 825  DYTPAPTETLDHDVMIEEVHEYFTNYIVNESLGIIANAHVVFADRQSLKAESTQCIKLAE 884

Query: 916  LFSIAVDFPKTGVPAEIPPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCVQ 737
            LFSIAVD+PKTGVPA+IP  L VKEYPDFMEK DR TY S+G+IGKLYR IK+  P    
Sbjct: 885  LFSIAVDYPKTGVPAQIPHELHVKEYPDFMEKLDRATYVSEGVIGKLYREIKKQNP---H 941

Query: 736  IKTFTKQVAVQSYDADMEVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGNI 557
            I+ FTK VA  SYD D+ VDG+++++ +A +FK EYDFKLGNLM+HYGI +EAEIISG I
Sbjct: 942  IRHFTKDVATLSYDTDLIVDGYQDYITEAVWFKEEYDFKLGNLMEHYGINSEAEIISGCI 1001

Query: 556  MKMSKIFTKNRDAEAIGRAVKVLRKEARSWFKDKHS-XXXXXXXXXNAKASAWYYVTYHH 380
            +KM+K FTK  DA+AI  AVK LRKEARSWF +  S           AKASAWY+VTYH 
Sbjct: 1002 LKMAKNFTKKSDADAIRLAVKSLRKEARSWFSEMGSDESGDGHKALVAKASAWYHVTYHP 1061

Query: 379  SYWGCYNEGL-KRPHFLSFPWCVYDKLTQIKQKKISQRKTASQVSLLQNRMR 227
             YWGCYN+G   RPH +SFPWCVYDKL  IKQKK   RK       LQNRMR
Sbjct: 1062 QYWGCYNKGYDHRPHLISFPWCVYDKLILIKQKKNIARKMLD----LQNRMR 1109


>gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare subsp. vulgare]
          Length = 1115

 Score = 1327 bits (3433), Expect = 0.0
 Identities = 690/1132 (60%), Positives = 838/1132 (74%), Gaps = 8/1132 (0%)
 Frame = -1

Query: 3598 MSSKTFRISGFPSYVTASQVTTFLEKYTFAESIVALKLRPSKN----SRAFAIVQFSKNE 3431
            M  KT ++SGFPS V A  V   LE+     ++ A+KLRP KN    SR+FAIVQF    
Sbjct: 1    MGGKTLQVSGFPSTVNADHVKDLLEQIVGTGNVFAVKLRPPKNISANSRSFAIVQFQSEA 60

Query: 3430 DARDLILMIQQRKLYYNGS-YLTLHNVEHDIIPKPRKSMFVLKNVKLYLGCPLSPERLSV 3254
             A  L+L   QR    +GS YL     E DI+P+PR ++F L+  KL+ GC L    LSV
Sbjct: 61   HA-SLVLNAAQRNALRSGSHYLKARYAERDIVPRPRTTIFNLQGAKLHFGCLLKERVLSV 119

Query: 3253 LWSVEEVDVKFGFEMRKIDFYLSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVA 3074
            LWS  +V V+FGF M++IDF L Y S  YKLEL+Y+SIWEIQLHR    + +FL+ QV A
Sbjct: 120  LWSGTDVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLLIQVQA 179

Query: 3073 APKLYKESSQNARSIYGDPIYNYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDL 2894
            APK+Y+++ + + S+Y DP++NYF+D  DDQW RT DF+PS+SIGQS  L LELP+   L
Sbjct: 180  APKIYEQNIRLSGSMYDDPLFNYFRDDTDDQWTRTTDFTPSASIGQSYILSLELPHICYL 239

Query: 2893 PDIHKYFFHYKEVDSRYAVENGFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGIL 2714
            P+I +YF +Y+  +  + ++ G+SYS N   VP+V+     +V YEILFKIN++VQNG L
Sbjct: 240  PNIREYFVYYEVHNDIFNLQPGYSYSSNTCFVPVVKSHYFTDVPYEILFKINHLVQNGTL 299

Query: 2713 IGQTLDREFYNLVCPCPSRPNAYIERALEMMSVMDFSCFAPAKWLIEQYAKFSRSKHINS 2534
             G TLD  FY LV P   R +  I+RALE MS +  +C  P  WL EQY K  RS+ + S
Sbjct: 300  SGPTLDDNFYRLVSPGYERIDR-IKRALEKMSYLKKTCLNPTNWLSEQYKKMRRSRVLTS 358

Query: 2533 PTISLDSDSGLVYVHRVQVTPSKVFFYGPEINVSNRVLRHYDEVVDDFLRISFVDEDREK 2354
            P I+LD D GLVYV+RVQ+TP+KV+FYGPEINVSNRV+R+Y   +D+FLRISFVDED EK
Sbjct: 359  PNITLDDD-GLVYVYRVQITPAKVYFYGPEINVSNRVVRNYAADLDNFLRISFVDEDCEK 417

Query: 2353 MHSNHILERAVSVGSERRTALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFAS 2174
            + S  + +R+    + RRTALY R+LS+L NGITIG K F+FLAFSSSQLR+NSAWMFAS
Sbjct: 418  LRSTDLSQRSAPGNNTRRTALYNRVLSVLSNGITIGDKHFDFLAFSSSQLRDNSAWMFAS 477

Query: 2173 SNMFCAGSIREWMGDFRRIRNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIEQ-SGYV 1997
                 A  IREWMG+FR IRNVAKYAARLGQSFSSSTETL V  +E +  PD+   + YV
Sbjct: 478  RPGLSASDIREWMGNFRNIRNVAKYAARLGQSFSSSTETLKVHKYEVKEAPDVTNGTEYV 537

Query: 1996 FSDGIGKISAEFAKKVAAKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKF 1817
            FSDGIG ISA+FA +V+ KC L    PSAFQIRY GYKGVVA+DPTS  KLSLRKSMSKF
Sbjct: 538  FSDGIGTISADFADEVSKKCNLTRFTPSAFQIRYGGYKGVVAIDPTSQWKLSLRKSMSKF 597

Query: 1816 ESKNTKLDVLAYSKYQPCFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERAL 1637
            +S N  LDVLAYSKYQPCFLNRQLITLLSTLG+ID IFE K +EAV  L+ ++ +P+ A+
Sbjct: 598  QSDNITLDVLAYSKYQPCFLNRQLITLLSTLGVIDSIFELKQQEAVQQLNRMVAEPQAAI 657

Query: 1636 EAVQLMHPGETANMLRELLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAM 1457
            +A++LM  GE  N+++ELLLCGY+PD EP+VSMLLQ FRAS+LLEL+T++RIFVPKGRAM
Sbjct: 658  DAIELMPMGEITNIVKELLLCGYRPDVEPYVSMLLQTFRASKLLELKTRSRIFVPKGRAM 717

Query: 1456 IGCLDESRSLKYGQVFVQVSCFENSRFHNNGLFFFNREHPAVVLEGKIIVAKNPCLHPGD 1277
            +GCLDE+R+LKYGQVF+Q S   + R  +             V+ GK+IVAKNPC+HPGD
Sbjct: 718  MGCLDETRTLKYGQVFIQASNSADDRGKS-------------VVTGKVIVAKNPCIHPGD 764

Query: 1276 VRILEAVNVPHLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEPM 1097
            +RIL+AV+ P L HMV+CVVFPQ G RPHPNECSGSDLDGDIYFVSWDP+L+P RM  PM
Sbjct: 765  IRILQAVHSPLLGHMVNCVVFPQLGPRPHPNECSGSDLDGDIYFVSWDPDLIPTRMVAPM 824

Query: 1096 EYAPAPTMELDHDVTIEEVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLAK 917
            +Y PAPT  LDHDV IEEV EYFTNYIVN+SLGIIANAH VFAD+  LKAE  +C+KLA+
Sbjct: 825  DYTPAPTETLDHDVMIEEVHEYFTNYIVNESLGIIANAHVVFADRQSLKAESTQCIKLAE 884

Query: 916  LFSIAVDFPKTGVPAEIPPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCVQ 737
            LFSIAVD+PKTGVPA+IP  L VKEYPDFMEK DR TY S+G+IGKLYR IK+  P    
Sbjct: 885  LFSIAVDYPKTGVPAQIPHELHVKEYPDFMEKLDRATYVSEGVIGKLYREIKKQNP---H 941

Query: 736  IKTFTKQVAVQSYDADMEVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGNI 557
            I+ FTK VA  SYD D+ VDG+++++ +A +FK EYDFKLGNLM+HYGI +EAEIISG I
Sbjct: 942  IRHFTKDVATLSYDTDLIVDGYQDYITEAVWFKEEYDFKLGNLMEHYGINSEAEIISGCI 1001

Query: 556  MKMSKIFTKNRDAEAIGRAVKVLRKEARSWFKDKHS-XXXXXXXXXNAKASAWYYVTYHH 380
            +KM+K FTK  DA+AI  AVK LRKEARSWF +  S           AKASAWY+VTYH 
Sbjct: 1002 LKMAKNFTKKSDADAIRLAVKSLRKEARSWFSEMGSDESGDGHKALVAKASAWYHVTYHP 1061

Query: 379  SYWGCYNEGL-KRPHFLSFPWCVYDKLTQIKQKKISQRKTASQVSLLQNRMR 227
             YWGCYNEG   RPH +SFPWCVYDKL  IKQKK   RK       LQNRMR
Sbjct: 1062 QYWGCYNEGYDHRPHLISFPWCVYDKLILIKQKKNIARKMLD----LQNRMR 1109


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score = 1326 bits (3431), Expect = 0.0
 Identities = 685/1137 (60%), Positives = 841/1137 (73%), Gaps = 10/1137 (0%)
 Frame = -1

Query: 3592 SKTFRISGFPSYVTASQVTTFLEKYTFAESIVALKLRPSKN--SRAFAIVQFSKNEDARD 3419
            SKT ++ GFPS V+A ++  FLEKYT   +I AL+++  ++  S   A VQF+  E A +
Sbjct: 2    SKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGASMTHAKVQFTSFELA-E 60

Query: 3418 LILMIQQRKLYYNGSYLTLHNVEHDIIPKPRKSMFVLKNVKLYLGCPLSPERLSVLWSVE 3239
             I+ + ++K++Y  +YL    ++ DIIPKPR  +  +  + L+ GC +S ER  VLW   
Sbjct: 61   FIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKAI 120

Query: 3238 EVDVKFGFEMRKIDFYLSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAAPKLY 3059
             V VKFG  +RK  F+LS+GS  YKLEL+Y++IW+IQL     Q ++FL+ Q++ AP++Y
Sbjct: 121  NVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQIY 180

Query: 3058 KESSQNARSIYGDPIYNY-FKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIH 2882
            ++           P+ +Y FK+ PDDQWVR IDF+PS  IGQS ALCLELPY   LP+  
Sbjct: 181  EKDV---------PVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFR 231

Query: 2881 KYFFHYKEVDSRYAVENGFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQT 2702
            + F +YKE D ++ +E+G SYS NL LVPI+ PP G  + ++ILFKIN +VQNG L G T
Sbjct: 232  ENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPT 291

Query: 2701 LDREFYNLVCPCPSRPNAYIERALEMMSVMDFSCFAPAKWLIEQYAKFSRSKHINSPTIS 2522
            LD  F+ LV P    P ++IE ALE +  +   C+ P +WL EQY  + +     SP IS
Sbjct: 292  LDTSFFRLVDP-ERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTYVKKPVAGSPAIS 350

Query: 2521 LDSDSGLVYVHRVQVTPSKVFFYGPEINVSNRVLRHYDEVVDDFLRISFVDEDREKMHSN 2342
            LD+  GLVYV RVQ+TP KV+F GPE+NVSNRVLR+Y E +D+FLR+SF+DE+ EK+HS 
Sbjct: 351  LDT--GLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHST 408

Query: 2341 HILERAVSVGSERRTALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMF 2162
             I  R    G  RRT +Y RILSIL+NGI IG KKF+FLAFSSSQLR+NSAWMFAS    
Sbjct: 409  VISPRMSKEG--RRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGL 466

Query: 2161 CAGSIREWMGDFRRIRNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIE----QSGYVF 1994
             A  IR WMGDF +IRNVAKYAARLGQSFSSS ETL V   E + IPDIE    ++ YVF
Sbjct: 467  TAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYVF 526

Query: 1993 SDGIGKISAEFAKKVAAKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFE 1814
            SDGIGKIS + A +VA KC  K S PSAFQIRY GYKGVVAVDPTSS KLSLRKSM K+E
Sbjct: 527  SDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYE 586

Query: 1813 SKNTKLDVLAYSKYQPCFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALE 1634
            S NT LDVLA+SKYQP FLNRQLITLLSTLG+ D +FEKK   AV  LD IL DP  A E
Sbjct: 587  SDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQE 646

Query: 1633 AVQLMHPGETANMLRELLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMI 1454
            A++LM PGE  N+L+E+L+CGYKPDAEPF+SM+LQ FRA++LLELRTK RIFVP GR+M+
Sbjct: 647  ALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMM 706

Query: 1453 GCLDESRSLKYGQVFVQVSCFENSRFHNNGLFF--FNREHPAVVLEGKIIVAKNPCLHPG 1280
            GCLDE+R+L+YG+VFVQ+S     +   + L F      H   +LEGKI+VAKNPCLHPG
Sbjct: 707  GCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCLHPG 766

Query: 1279 DVRILEAVNVPHLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEP 1100
            DVR+L AVNVP LHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV WD +L+P +   P
Sbjct: 767  DVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINP 826

Query: 1099 MEYAPAPTMELDHDVTIEEVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLA 920
            M+Y PAPT  LDHDV IEEV EYFTNYIVNDSLGIIANAHTVFADK   KA C  C +LA
Sbjct: 827  MDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELA 886

Query: 919  KLFSIAVDFPKTGVPAEIPPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCV 740
            KLFSIAVDFPKTGVPAEIP  L+VKEYPDFMEK D+ TYES+ +IGKL+R +K+  P   
Sbjct: 887  KLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNC 946

Query: 739  QIKTFTKQVAVQSYDADMEVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGN 560
             I++FT+ VA QSYD DMEV GFE++++DAF++K EYD+KLGNLMD+YGIKTE+EI+SG+
Sbjct: 947  NIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGS 1006

Query: 559  IMKMSKIFTKNRDAEAIGRAVKVLRKEARSWFKDKHSXXXXXXXXXNAKASAWYYVTYHH 380
            IM+MSK F + +DAEAIG AVK LRKEAR+WF    S          AKASAWY+VTYH 
Sbjct: 1007 IMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHP 1066

Query: 379  SYWGCYNEGLKRPHFLSFPWCVYDKLTQIKQKKISQRKTASQVSLLQNRM-RGLQIG 212
             YWGCYNEG+ R HFLSFPWCVYDKL   K+KK+S R  +  +S L+ R+ +GL++G
Sbjct: 1067 DYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGR--SLHLSSLERRLSQGLRLG 1121


>ref|XP_004953848.1| PREDICTED: probable RNA-dependent RNA polymerase 1-like [Setaria
            italica]
          Length = 1123

 Score = 1315 bits (3402), Expect = 0.0
 Identities = 675/1131 (59%), Positives = 834/1131 (73%), Gaps = 11/1131 (0%)
 Frame = -1

Query: 3589 KTFRISGFPSYVTASQVTTFLEKYTFAESIVALKLRPSKN----SRAFAIVQFSKNEDAR 3422
            +T ++SGF    +A  V  FLE+   A ++ ALKLR  +N    S+AFAIVQF   E A 
Sbjct: 3    RTIQVSGFALTDSAEYVKDFLERIAGAGTVYALKLRHPRNITATSKAFAIVQFQTQECAS 62

Query: 3421 DLILMIQQRKLYYNGSYLTLHNVEHDIIPKPRKSMFVLKNVKLYLGCPLSPERLSVLWSV 3242
             +    Q+  L     YL     + DI+P+PR +MF L    L+LGC +    L  L+SV
Sbjct: 63   LVENAAQRNALRSRCIYLKARPADRDIVPRPRIAMFSLDAAALHLGCLVKENILYTLFSV 122

Query: 3241 EEVDVKFGFEMRKIDFYLSYGSCSYKLELAYDSIWEIQLHR--SYSQRSQFLVFQVVAAP 3068
              + V+FGF+M+KI FYLSY    YKLEL+Y+SIWE+QLHR  +Y  +++FL+FQV AAP
Sbjct: 123  RNISVQFGFDMKKIYFYLSYNLIKYKLELSYESIWEMQLHRPPAYLSQTKFLLFQVQAAP 182

Query: 3067 KLYKESSQNARSIYGDPIYNYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPD 2888
            K+Y+   + +  +Y DP +N+F+D  D+QW RTIDF+PS+SIGQS  LCLE+P + +LP+
Sbjct: 183  KIYELLPRRSGLMYEDPFFNWFRDDTDEQWTRTIDFTPSASIGQSSILCLEVPQQCELPN 242

Query: 2887 IHKYFFHYKEVDSRYAVENGFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIG 2708
            I  YF +YKE +  +  + G+SYS     VPIV+ P  IEV YEILFKIN++VQNG L G
Sbjct: 243  IADYFVYYKEHNLDFECQKGYSYSCGNSFVPIVKSPDYIEVPYEILFKINHLVQNGTLSG 302

Query: 2707 QTLDREFYNLVCPCPSRPNAYIERALEMMSVMDFSCFAPAKWLIEQYAKFSRSKHINSPT 2528
             TLD  F+ LV P    P  +I+RAL  MS +  +C  P  WL  QY+K  +S++    +
Sbjct: 303  PTLDDNFFCLVSP-KHVPIDHIKRALLKMSYLKSTCLNPTNWLALQYSKIRKSRYALQRS 361

Query: 2527 ISLDSDSGLVYVHRVQVTPSKVFFYGPEINVSNRVLRHYDEVVDDFLRISFVDEDREKMH 2348
              +  D GLVYVHRVQVTP+KV+FYGPEINVSNRV+RH+   +D+FLRISFVDED EK+ 
Sbjct: 362  SGISLDDGLVYVHRVQVTPAKVYFYGPEINVSNRVVRHFSADLDNFLRISFVDEDCEKLR 421

Query: 2347 SNHILERAVSVGSERRTALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSN 2168
            S  +  R+ S    RRTALY R+LS+L NGI+IG K FEFLAFSSSQLR+NSAWMFAS  
Sbjct: 422  SVDLSPRSASGNDARRTALYNRVLSVLSNGISIGGKHFEFLAFSSSQLRDNSAWMFASRP 481

Query: 2167 MFCAGSIREWMGDFRRIRNVAKYAARLGQSFSSSTETLSVESHEFQLIPDI----EQSGY 2000
               A  IR+WMGDFR IRNVAKYAARLGQSFSSSTETL V  +E + IPDI    + + Y
Sbjct: 482  GLTASDIRKWMGDFRNIRNVAKYAARLGQSFSSSTETLKVPRYEVEEIPDITDITDGTEY 541

Query: 1999 VFSDGIGKISAEFAKKVAAKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSK 1820
            +FSDGIGKISA FA +VA KC+LK   PS FQIRY GYKGVVA+DP S+ KLSLRKSMSK
Sbjct: 542  IFSDGIGKISANFALEVAMKCKLKRFAPSVFQIRYGGYKGVVAIDPASNRKLSLRKSMSK 601

Query: 1819 FESKNTKLDVLAYSKYQPCFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERA 1640
            F+S+N  LDVLAYSKYQPCFLNRQLITLLSTLG+   +FE K EEAV  L+ ++T+P+ A
Sbjct: 602  FQSENITLDVLAYSKYQPCFLNRQLITLLSTLGVSGTVFELKQEEAVRQLNRMVTEPQAA 661

Query: 1639 LEAVQLMHPGETANMLRELLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRA 1460
             EA++LM  GE  N+++ELL CGY+PD EP++SMLLQ FRAS+LLEL+TK+RIF+P+GRA
Sbjct: 662  SEAIELMPMGEVTNVVKELLSCGYQPDHEPYLSMLLQTFRASKLLELKTKSRIFIPQGRA 721

Query: 1459 MIGCLDESRSLKYGQVFVQVSCFENSRFHNNGLFFFNREHPAVVLEGKIIVAKNPCLHPG 1280
            M+GCLDE+R+LKYGQVF+Q S             +   +H   V+ GK++VAKNPCLHPG
Sbjct: 722  MMGCLDETRTLKYGQVFIQAS-------------YCADDHRKFVVTGKVVVAKNPCLHPG 768

Query: 1279 DVRILEAVNVPHLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEP 1100
            D+R+L AV+VP+LHHM DCVVFPQ+G RPHPNECSGSDLDGDIYFVSWD  L+P+RM EP
Sbjct: 769  DIRVLHAVDVPYLHHMFDCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDQTLIPSRMVEP 828

Query: 1099 MEYAPAPTMELDHDVTIEEVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLA 920
            M+Y PAP   LDHDVTIEE+ EYFTNYIVN+SLGIIANAH VFADK +LKAE   C+KLA
Sbjct: 829  MDYTPAPADILDHDVTIEEIQEYFTNYIVNESLGIIANAHVVFADKERLKAESLPCIKLA 888

Query: 919  KLFSIAVDFPKTGVPAEIPPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCV 740
            KLFS+AVDFPKTGVPA IPP L VKEYPDFMEK D+VTY+S G+IG+LYR IK+H P   
Sbjct: 889  KLFSVAVDFPKTGVPALIPPELHVKEYPDFMEKLDKVTYKSSGVIGRLYREIKKHTP--- 945

Query: 739  QIKTFTKQVAVQSYDADMEVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGN 560
             IK FT+ VA QSYD D+ VDG+E+++++A  FK EYDFKLGNLMDHYGIK+EAEIISG 
Sbjct: 946  HIKHFTRDVARQSYDTDLIVDGYEDYISEAVEFKEEYDFKLGNLMDHYGIKSEAEIISGC 1005

Query: 559  IMKMSKIFTKNRDAEAIGRAVKVLRKEARSWFKDKHS-XXXXXXXXXNAKASAWYYVTYH 383
            I+KM+K FTK+ DA+AI  AV+ LRKEARSWF +  +           AKASAWY+VTYH
Sbjct: 1006 ILKMAKNFTKSSDADAIRMAVRSLRKEARSWFNEMSTGEDGIGQDAIEAKASAWYHVTYH 1065

Query: 382  HSYWGCYNEGLKRPHFLSFPWCVYDKLTQIKQKKISQRKTASQVSLLQNRM 230
              YWG YNEG  RPH +SFPWCVYD+L  IKQ++   RK    ++ L N M
Sbjct: 1066 PQYWGSYNEGYDRPHLISFPWCVYDRLLCIKQRRNFLRKMEPDLTSLLNNM 1116


>ref|XP_002454320.1| hypothetical protein SORBIDRAFT_04g028630 [Sorghum bicolor]
            gi|241934151|gb|EES07296.1| hypothetical protein
            SORBIDRAFT_04g028630 [Sorghum bicolor]
          Length = 1114

 Score = 1308 bits (3384), Expect = 0.0
 Identities = 667/1113 (59%), Positives = 824/1113 (74%), Gaps = 7/1113 (0%)
 Frame = -1

Query: 3598 MSSKTFRISGFPSYVTASQVTTFLEKYTFAESIVALKLRP----SKNSRAFAIVQFSKNE 3431
            M  +T ++ GF    +A  V  FLE+ + A +I ALKLR     S NSRAFAIVQF   E
Sbjct: 1    MVGRTIQVHGFALTDSAESVKEFLERISGAGTIYALKLRHPRNISANSRAFAIVQFQSQE 60

Query: 3430 DARDLILMIQQRKLYYNGSYLTLHNVEHDIIPKPRKSMFVLKNVKLYLGCPLSPERLSVL 3251
             A  +  ++Q+        YL     + DI+P+PR  MF L++  L+LGC +    LS L
Sbjct: 61   SASLVEDVVQRNAPRIGRFYLKTRPADRDIVPRPRIPMFSLEDTVLHLGCLVKENILSAL 120

Query: 3250 WSVEEVDVKFGFEMRKIDFYLSYGSCSYKLELAYDSIWEIQLHR--SYSQRSQFLVFQVV 3077
            ++   V V+FGF+M+KI FYLSY    YKLEL+Y+SIWEIQLHR  +Y  R++FL+ QV 
Sbjct: 121  FTASNVSVQFGFDMKKIYFYLSYNFIKYKLELSYESIWEIQLHRPPAYRSRTKFLLIQVQ 180

Query: 3076 AAPKLYKESSQNARSIYGDPIYNYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYD 2897
            AAPK+Y+   +    +Y DP +N+F D  D+QW RTIDF+PS SIGQS   CLE+P + +
Sbjct: 181  AAPKIYELLPRRPGLMYEDPFFNWFMDDTDEQWTRTIDFTPSVSIGQSSIFCLEVPQQCE 240

Query: 2896 LPDIHKYFFHYKEVDSRYAVENGFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGI 2717
            LP I  YF +YKE +  +   NG+SYS    LVPIV+ P  IEV YEILFKIN++VQNG 
Sbjct: 241  LPRIGDYFVYYKERNLDFECRNGYSYSCGNCLVPIVKSPDYIEVPYEILFKINHLVQNGT 300

Query: 2716 LIGQTLDREFYNLVCPCPSRPNAYIERALEMMSVMDFSCFAPAKWLIEQYAKFSRSKHIN 2537
            L G T+D  F+  V P    P  +I+RAL  MS +  +C  P  WL  QY++  RS+H +
Sbjct: 301  LSGPTVDHSFFCHVSP-EFEPIDHIKRALLKMSYLKSTCLNPTNWLSVQYSRIRRSRHAS 359

Query: 2536 SPTISLDSDSGLVYVHRVQVTPSKVFFYGPEINVSNRVLRHYDEVVDDFLRISFVDEDRE 2357
              + ++  D GLVYVHRVQVTP+KV+FYGPEINVSNRV+R++   +D+FLRISFVDED E
Sbjct: 360  QRSSNISLDDGLVYVHRVQVTPAKVYFYGPEINVSNRVVRNFSADIDNFLRISFVDEDCE 419

Query: 2356 KMHSNHILERAVSVGSERRTALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFA 2177
            K+ S  +  R+ S    RRTALY R+LS+L NGI IG K FEFLAFSSSQLR+NSAWMFA
Sbjct: 420  KLRSLDLSPRSTSGNDARRTALYNRVLSVLSNGINIGDKHFEFLAFSSSQLRDNSAWMFA 479

Query: 2176 SSNMFCAGSIREWMGDFRRIRNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIEQ-SGY 2000
            S     A  IR+WMGDFR IRNVAKYAARLGQSFSSSTETL V  HE + IPDI+  + Y
Sbjct: 480  SRQGLTASDIRKWMGDFRDIRNVAKYAARLGQSFSSSTETLIVRKHEVEQIPDIKNGTNY 539

Query: 1999 VFSDGIGKISAEFAKKVAAKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSK 1820
            +FSDG+GKISA FAK+VA KC+L+   PS FQIRY GYKGVVAVDP S+ KLSLR+SM K
Sbjct: 540  IFSDGVGKISANFAKEVAMKCKLRRFAPSVFQIRYGGYKGVVAVDPRSNRKLSLRRSMLK 599

Query: 1819 FESKNTKLDVLAYSKYQPCFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERA 1640
            F+S+N  LDVLAYSKYQPCFLNRQLITLLSTLG+ D +FE K +EA+  L+ ++T+P+ A
Sbjct: 600  FQSENITLDVLAYSKYQPCFLNRQLITLLSTLGVGDNVFELKQKEAIKQLNRMVTEPQAA 659

Query: 1639 LEAVQLMHPGETANMLRELLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRA 1460
             EAV+LM  GE  N+++ELL CGY+PD EP++SMLLQ FRAS+LLEL+TK+RIF+ +GRA
Sbjct: 660  REAVELMPMGEVTNVVKELLSCGYQPDHEPYLSMLLQTFRASKLLELKTKSRIFITQGRA 719

Query: 1459 MIGCLDESRSLKYGQVFVQVSCFENSRFHNNGLFFFNREHPAVVLEGKIIVAKNPCLHPG 1280
            M+GCLDE+R+LKYGQVF+Q S             +   +H  +V+ GK++VAKNPCLHPG
Sbjct: 720  MMGCLDETRTLKYGQVFIQAS-------------YCADDHHKIVVTGKVVVAKNPCLHPG 766

Query: 1279 DVRILEAVNVPHLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEP 1100
            D+R+L+AV+VP LHHM DCVVFPQ+G RPHPNECSGSDLDGDIYFVSWDP+L+P+ M +P
Sbjct: 767  DIRVLQAVDVPSLHHMFDCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPDLIPSHMEDP 826

Query: 1099 MEYAPAPTMELDHDVTIEEVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLA 920
            M+Y PAP   LDHDVTIEE+ EYFTNYIVN+SLGIIANAH V+ADK  LKA+   CL+LA
Sbjct: 827  MDYTPAPAETLDHDVTIEEIQEYFTNYIVNESLGIIANAHVVYADKEDLKAKSRPCLELA 886

Query: 919  KLFSIAVDFPKTGVPAEIPPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCV 740
            KLFSIAVDFPKTGVPA IPP L VKEYPDFMEK D+ TYESKG+IGKLYR IK+H P   
Sbjct: 887  KLFSIAVDFPKTGVPALIPPELHVKEYPDFMEKLDKATYESKGVIGKLYREIKKHTP--- 943

Query: 739  QIKTFTKQVAVQSYDADMEVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGN 560
             I+ FT++VA +SYD D+ VDG+E+++ +A  FK EYDF+LGNLMDHYGIK+EAEIISG 
Sbjct: 944  HIRHFTREVAKRSYDTDLIVDGYEDYITEAIEFKEEYDFRLGNLMDHYGIKSEAEIISGC 1003

Query: 559  IMKMSKIFTKNRDAEAIGRAVKVLRKEARSWFKDKHSXXXXXXXXXNAKASAWYYVTYHH 380
             +KM+K FTK+ DA+AI  AV+ LRKEARSWF +  S          AKASAWY+VTY  
Sbjct: 1004 FLKMAKNFTKSSDADAIRMAVRSLRKEARSWFNEM-STSEDDQDATEAKASAWYHVTYDP 1062

Query: 379  SYWGCYNEGLKRPHFLSFPWCVYDKLTQIKQKK 281
             YWG YNEG  RPH +SFPWCVYDKL  IKQ++
Sbjct: 1063 QYWGNYNEGYDRPHLISFPWCVYDKLVIIKQRR 1095


>gb|EMT27792.1| Putative RNA-dependent RNA polymerase 1 [Aegilops tauschii]
          Length = 1144

 Score = 1303 bits (3371), Expect = 0.0
 Identities = 688/1161 (59%), Positives = 840/1161 (72%), Gaps = 37/1161 (3%)
 Frame = -1

Query: 3598 MSSKTFRISGFPSYVTASQVTTFLEKYTFAESIVALKLRPSKN----SRAFAIVQFSKNE 3431
            M  KT ++SGFPS V A  V   LE+     ++ A+KLRP KN    S++FAIVQF    
Sbjct: 1    MGGKTIQVSGFPSTVNADHVKDLLEQIVGTGNVFAIKLRPPKNISANSKSFAIVQFQSEA 60

Query: 3430 DARDLILMIQQRKLYYNGS-YLTLHNVEHDIIPKPRKSMFVLKNVKLYLGCPLSPERLSV 3254
             A  L+L   +R    +GS +L     E DI+P+PR ++F L++  L+ GC L  + LSV
Sbjct: 61   HA-SLVLNAARRNALRSGSNHLKARYAERDIVPRPRTTIFNLQDATLHFGCLLREKALSV 119

Query: 3253 LWSVEEVDVKFGFEMRKIDFYLSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFL------ 3092
            LWS   V V+FGF M++IDF L Y S  YKLEL+Y+SIWEIQLHR    + +FL      
Sbjct: 120  LWSGTNVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLLIQLRD 179

Query: 3091 ----------VFQVVAAPKLYKESSQNARSIYGDPIYNYFKDVPDDQWVRTIDFSPSSSI 2942
                      V QV AAPK+Y+++ + + S+Y DP++NYF+D  DDQW RT DF+PS+SI
Sbjct: 180  FDNLSWRNVSVSQVQAAPKIYEQNIRRSGSMYDDPLFNYFRDDTDDQWTRTTDFTPSASI 239

Query: 2941 GQSCALCLELPYRYDLPDIHKYFFHYKEVDSRYAVENGFSYSRNLDLVPIVEPPSGIEVS 2762
            GQS  LCLELP+   LP+I +YF +Y+  D  + ++ G SYS N   VP+V+     +V 
Sbjct: 240  GQSYILCLELPHICYLPNIREYFVYYEVHDDVFHLQRGHSYSSNTCFVPVVKSHHFTDVP 299

Query: 2761 YEILFKINYMVQNGILIGQTLDREFYNLVCPCPSRPNAYIERALEMMSVMDFSCFAPAKW 2582
            YEILFKIN++VQNG L G TLD  FY LV P     + +I+RALE MS +  +C  P KW
Sbjct: 300  YEILFKINHLVQNGTLSGPTLDDNFYRLVSPGYECID-HIKRALEKMSYLKKTCLNPTKW 358

Query: 2581 LIEQYAKFSRSKH-INSPTISLDSDSGLVYVHRVQVTPSKVFFYGPEINVSNRVLRHYDE 2405
            L EQY K  RS++ +  P I+LD D GLVYV+RVQ+TP+KV+FYGPEINVSNRV+RHY  
Sbjct: 359  LSEQYKKKRRSRYMLKLPNITLDDD-GLVYVYRVQITPAKVYFYGPEINVSNRVVRHYAA 417

Query: 2404 VVDDFLRISFVDEDREKMHSNHILERAVSVGSERRTALYWRILSILKNGITIGSKKFEFL 2225
             +D+FLRISFVDED EK+ S  + +R+    + RRTALY R+LS+L NGITIG K F+FL
Sbjct: 418  DLDNFLRISFVDEDCEKLRSTDLSQRSAPGNNTRRTALYNRVLSVLSNGITIGDKHFDFL 477

Query: 2224 AFSSSQLRENSAWMFASSNMFCAGSIREWMGDFRRIRNVAKYAARLGQSFSSSTETLSVE 2045
            AFSSSQLR+NSAWMFAS     A  IREWMGDFR IRNVAKYAARLGQSFSSSTETL V 
Sbjct: 478  AFSSSQLRDNSAWMFASRPGLSASDIREWMGDFRNIRNVAKYAARLGQSFSSSTETLKVH 537

Query: 2044 SHEFQLIPDIEQ-SGYVFSDGIGKISAEFAKKVAAKCRLKGSVPSAFQIRYAGYKGVVAV 1868
             +E +  PD+   + YVFSDGIG ISA+FA +V+ KC L    PSAFQIRY GYKGVVA+
Sbjct: 538  KYEVKEAPDVTNGTKYVFSDGIGTISADFADEVSKKCNLTRFTPSAFQIRYGGYKGVVAI 597

Query: 1867 DPTSSVKLSLRKSMSKFESKNTKLDVLAYSKYQPCFLNRQLITLLSTLGIIDCIFEKKIE 1688
            DPTS  KLSLRKSMSKF+S+N  LDVLAYSKYQPCFLNRQLITLLSTLG+ D IFE K +
Sbjct: 598  DPTSRWKLSLRKSMSKFQSENITLDVLAYSKYQPCFLNRQLITLLSTLGVRDSIFELKQQ 657

Query: 1687 EAVYDLDIILTDPERALEAVQLMHPGETANMLRELLLCGYKPDAEPFVSMLLQAFRASRL 1508
            EAV  L+ ++ +P+ A++A++LM  GE  N+++ELLLCGY+PD EP+VSMLLQ FRAS+L
Sbjct: 658  EAVKQLNRMVAEPQAAIDAIELMPMGEVTNVVKELLLCGYQPDLEPYVSMLLQTFRASKL 717

Query: 1507 LELRTKARIFVPKGRAMIGCLDESRSLKYGQVFVQVSCFENSRFHNNGLFFFNREHPAVV 1328
            LEL+T++RIFVPKGRAM+GCLDE+R+LKYGQVF+Q S   + R  +             +
Sbjct: 718  LELKTRSRIFVPKGRAMMGCLDETRTLKYGQVFIQASNSADDRGKS-------------I 764

Query: 1327 LEGKIIVAKNPCLHPGDVRILEAVNVPHLHHMVDCVVFPQKGKR------------PHPN 1184
            + GK++VAKNPC+HPGD+RIL+AV  P L HMV+CVVFPQ G R            PHPN
Sbjct: 765  VTGKVVVAKNPCIHPGDIRILQAVQSPLLGHMVNCVVFPQLGPRQVFSNAFFYVFQPHPN 824

Query: 1183 ECSGSDLDGDIYFVSWDPELMPARMAEPMEYAPAPTMELDHDVTIEEVMEYFTNYIVNDS 1004
            ECSGSDLDGDIYFVSWDP+L+P RM  PM+Y PAPT  LDHDV IEEV EYFTNYIVN+S
Sbjct: 825  ECSGSDLDGDIYFVSWDPDLIPTRMVAPMDYTPAPTETLDHDVMIEEVHEYFTNYIVNES 884

Query: 1003 LGIIANAHTVFADKSKLKAECHECLKLAKLFSIAVDFPKTGVPAEIPPTLQVKEYPDFME 824
            LGIIANAH VFAD+  LKAE   C+KLA+LFSIAVD+PKTGVPA+IPP L VKEYPDFME
Sbjct: 885  LGIIANAHVVFADREILKAESTPCIKLAELFSIAVDYPKTGVPAQIPPELHVKEYPDFME 944

Query: 823  KQDRVTYESKGIIGKLYRAIKEHKPDCVQIKTFTKQVAVQSYDADMEVDGFEEHLNDAFF 644
            K DR TY S+GIIGKLYR IK+  P    I  FTK VA +SYD D+ VDG+++++ +A +
Sbjct: 945  KLDRATYVSEGIIGKLYREIKKQNP---HIGHFTKDVARRSYDTDLIVDGYQDYITEAVW 1001

Query: 643  FKGEYDFKLGNLMDHYGIKTEAEIISGNIMKMSKIFTKNRDAEAIGRAVKVLRKEARSWF 464
            FK +YDFKLGNLM+HYGI +EAEIISG I+KM+  FTK  DA+AI  AVK LRKEARSWF
Sbjct: 1002 FKEQYDFKLGNLMEHYGINSEAEIISGCILKMANNFTKKNDADAIRLAVKSLRKEARSWF 1061

Query: 463  KDKHS-XXXXXXXXXNAKASAWYYVTYHHSYWGCYNEGL-KRPHFLSFPWCVYDKLTQIK 290
             +  S          +AKASAWY+VTYH  YWGCYNEG   RPHF+SFPWCVYDKL QIK
Sbjct: 1062 SEMGSDESGDGHEASDAKASAWYHVTYHPEYWGCYNEGYDHRPHFISFPWCVYDKLIQIK 1121

Query: 289  QKKISQRKTASQVSLLQNRMR 227
            +KK   RK       LQNRMR
Sbjct: 1122 RKKNFVRKMLD----LQNRMR 1138


>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
            gi|482575337|gb|EOA39524.1| hypothetical protein
            CARUB_v10008144mg [Capsella rubella]
          Length = 1107

 Score = 1298 bits (3360), Expect = 0.0
 Identities = 669/1131 (59%), Positives = 825/1131 (72%), Gaps = 11/1131 (0%)
 Frame = -1

Query: 3589 KTFRISGFPSYVTASQVTTFLEKYTFAESIVALKLRPSKNS--RAFAIVQFSKNEDARDL 3416
            KT ++ GFP  V    V  FLE+ T + ++ A+K+R  K    R FAIVQF+    AR +
Sbjct: 3    KTIQVFGFPVGVNTDDVKIFLERLTGSGTVYAIKVRQPKRGGPRVFAIVQFTSERHARLI 62

Query: 3415 ILMIQQRKLYYNGSYLTLHNVEHDIIPKPRKSMFVLKNVKLYLGCPLSPERLSVLWSVEE 3236
            I M  +R LYY  SYL    +E DI+PKPR S+  + N+K+Y GC +SP++L  LWS   
Sbjct: 63   ITMAAER-LYYGRSYLKAFEMEQDIVPKPRASLHSISNLKMYFGCQVSPKKLLTLWSAHN 121

Query: 3235 VDVKFGFEMRKIDFYLSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAAPKLYK 3056
            V V FG  MRK+ F +S+    Y+LEL+Y++IW+I LH      S+FLV QV+ APK+++
Sbjct: 122  VCVSFGTGMRKLHFSMSWYQKDYRLELSYENIWQIDLHSPQGGSSKFLVIQVIGAPKIFE 181

Query: 3055 ESSQNARSIYGDPIYNYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHKY 2876
            +  Q    ++G  + +++ D  D+QW+RT DF+ SS IGQS A CLELP    +PD  + 
Sbjct: 182  KEDQPVNFLFG--MMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHVHVPDFREN 239

Query: 2875 FFHYKEVD-SRYAVENGFSYSRNLD-LVPIVEPPSGIEVSYEILFKINYMVQNGILIGQT 2702
            F +Y E   S + +++G SYS N + LVP+V+PP G ++ +EILFK+N +VQN  L G  
Sbjct: 240  FANYAEHRASTFLIQSGSSYSSNANKLVPVVDPPPGFDLPFEILFKVNTLVQNACLPGPA 299

Query: 2701 LDREFYNLVCPCPSRPNAYIERALEMMSVMDFSCFAPAKWLIEQYAKFSRSKHIN-SPTI 2525
            LD EFY L+ P      A I+ +LE +  +   C+ PA+WL E+Y K + SK +  SPTI
Sbjct: 300  LDLEFYQLLNP-KKYDRALIDHSLEKLFHLGECCYEPARWLREEYKKLNSSKKLPLSPTI 358

Query: 2524 SLDSDSGLVYVHRVQVTPSKVFFYGPEINVSNRVLRHYDEVVDDFLRISFVDEDREKMHS 2345
            SLD   GLVY++RV VTP++V+F GPE+NVSNRVLRHY E +++FLRISFVDED EK+HS
Sbjct: 359  SLDD--GLVYIYRVLVTPARVYFLGPEVNVSNRVLRHYSEYINNFLRISFVDEDLEKIHS 416

Query: 2344 NHILERAVSVGSERRTALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNM 2165
              +  R+    ++RRT LY RI S+L++GI IG KKFEFLAFSSSQLRENSAWMFA  + 
Sbjct: 417  MDLSPRS---STQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPRDR 473

Query: 2164 FCAGSIREWMGDFRRIRNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIE----QSGYV 1997
              A  IR WMGDF  IRNVAKYAARLGQSFSSS ETL+V S E ++IPD+E     + YV
Sbjct: 474  LTAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEAMYLDTRYV 533

Query: 1996 FSDGIGKISAEFAKKVAAKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKF 1817
            FSDGIGKISAEFA+KVA KC L    PSAFQIRY GYKGVVAVDP SS KLSLRKSMSKF
Sbjct: 534  FSDGIGKISAEFARKVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKF 593

Query: 1816 ESKNTKLDVLAYSKYQPCFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERAL 1637
            ES NTKLDVLA+SKYQPC+LNRQ+ITLLSTLG+ D +FEKK  E V  LD ILTDP  A 
Sbjct: 594  ESGNTKLDVLAWSKYQPCYLNRQIITLLSTLGVKDNVFEKKQREVVDRLDAILTDPLEAH 653

Query: 1636 EAVQLMHPGETANMLRELLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAM 1457
            EA+ LM PGE  N+L++LLLCGYKPDAEPF+SM+LQ FRAS+LLELRTK RIF+P GR+M
Sbjct: 654  EALGLMAPGENTNILKQLLLCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIPGGRSM 713

Query: 1456 IGCLDESRSLKYGQVFVQVSCFENSRFHNNGLFFFNREHPA--VVLEGKIIVAKNPCLHP 1283
            +GCLDE+R+L+YGQV VQ S               N   P    ++ G ++VAKNPCLHP
Sbjct: 714  MGCLDETRTLEYGQVVVQYS---------------NPTMPGKRYIITGPVVVAKNPCLHP 758

Query: 1282 GDVRILEAVNVPHLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAE 1103
            GDVR+L+AVNVP L+HMVDCVVFPQKG RPHPNECSGSDLDGDIYF+ WD EL+P R +E
Sbjct: 759  GDVRVLQAVNVPALYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFICWDHELIPPRTSE 818

Query: 1102 PMEYAPAPTMELDHDVTIEEVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKL 923
            PM+Y P P   LDHDVTIEEV EYF NYIVNDSLGIIANAHT FADK  LKA    C++L
Sbjct: 819  PMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIEL 878

Query: 922  AKLFSIAVDFPKTGVPAEIPPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDC 743
            A+ FSIAVDFPKTG+ AEIP  L VKEYPDFM+K D+ TYESK +IGKL+R +KE  P  
Sbjct: 879  ARKFSIAVDFPKTGIAAEIPQHLYVKEYPDFMDKPDKPTYESKNVIGKLFREVKERAPPL 938

Query: 742  VQIKTFTKQVAVQSYDADMEVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISG 563
            + I++FT  VA++SYD DMEV+GFEE++++AFF KG YD++LGNLMD+YGIKTEAEI+SG
Sbjct: 939  ISIRSFTLDVALKSYDKDMEVEGFEEYIDEAFFHKGNYDYRLGNLMDYYGIKTEAEILSG 998

Query: 562  NIMKMSKIFTKNRDAEAIGRAVKVLRKEARSWFKDKHSXXXXXXXXXNAKASAWYYVTYH 383
             IM+MSK FTK RDAE+IGRAV+ LRKEA SWF +            +AKASAWY+VTYH
Sbjct: 999  GIMRMSKSFTKRRDAESIGRAVRALRKEALSWFNNAED---KNDFDESAKASAWYHVTYH 1055

Query: 382  HSYWGCYNEGLKRPHFLSFPWCVYDKLTQIKQKKISQRKTASQVSLLQNRM 230
             SYWG YNEGL R HFLSF WCVYDKL +IK+  + +R+    +  L   M
Sbjct: 1056 SSYWGVYNEGLNRDHFLSFAWCVYDKLVRIKKANVGRRQRQEALEQLGRLM 1106


>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
            gi|548853371|gb|ERN11375.1| hypothetical protein
            AMTR_s00176p00039530 [Amborella trichopoda]
          Length = 1210

 Score = 1296 bits (3355), Expect = 0.0
 Identities = 650/1138 (57%), Positives = 824/1138 (72%), Gaps = 13/1138 (1%)
 Frame = -1

Query: 3589 KTFRISGFPSYVTASQVTTFLEKYTFAESIVALKLRPSK---NSRAFAIVQFSKNEDARD 3419
            +T ++SGFP    A  V  FLE  T   ++  LK+R  K   NSR FAIVQF+ ++ A  
Sbjct: 76   RTVQVSGFPQGTCAEAVKKFLESITGFGTVYHLKIRIHKSKPNSRVFAIVQFTTSKSAEV 135

Query: 3418 LILMIQQRK-LYYNGSYLTLHNVEHDIIPKPRKSMFVLKNVKLYLGCPLSPERLSVLWSV 3242
            +  +  Q K LY+  SY+ +  +E+DI+P PR +  VL++++LY G  +S E  ++LWS 
Sbjct: 136  IYSLAPQPKSLYFGNSYVIVRYMENDIVPNPRVTYHVLESIQLYFGNQISEESFAILWSN 195

Query: 3241 EEVDVKFGFEMRKIDFYLSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAAPKL 3062
              V V+FGF ++KI FYL++    YKL+L Y++IW+IQL R  ++ +++LV Q+  AP++
Sbjct: 196  TNVKVEFGFGLKKIFFYLAHTGVDYKLDLYYENIWQIQLRRPGTEGTRYLVLQMQGAPRI 255

Query: 3061 YKESSQNARSIYGDPIYNYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIH 2882
            +++    +  IY  P++NY+KD PD+QWVR+IDF+PS SIGQS +LCL LP    +P+I 
Sbjct: 256  FQKPLSFSSDIYDSPLFNYYKDFPDEQWVRSIDFTPSCSIGQSSSLCLALPNGTRIPNIR 315

Query: 2881 KYFFHYKEVDSRYAVENGFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQT 2702
            + F +YKE+   + ++ G S+S +L LVPIV PP  I++ Y+ILF++N +VQNG L+G T
Sbjct: 316  ENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIKLPYKILFRVNSLVQNGFLVGPT 375

Query: 2701 LDREFYNLVCPCPSRPNAYIERALEMMSVMDFSCFAPAKWLIEQYAKFSRSKHINSPTIS 2522
            LD EFYNL+   PS    ++ER+LE +S +   C  PAKWL EQY K+       SP  +
Sbjct: 376  LDTEFYNLLNGLPS---PFVERSLEDISRLTNCCLEPAKWLQEQYKKYRNLPRRPSPA-A 431

Query: 2521 LDSDSGLVYVHRVQVTPSKVFFYGPEINVSNRVLRHYDEVVDDFLRISFVDEDREKMHSN 2342
            +  + GLVYVHRVQVTPSKV+FYGPE+NVSNRVLR +   +D+FLRISF+DED   + S 
Sbjct: 432  ISLEPGLVYVHRVQVTPSKVYFYGPEVNVSNRVLRQFSNYIDNFLRISFIDEDFGSIRST 491

Query: 2341 HILERAVSVGSERRTALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMF 2162
             + +R  S   E+ T +Y R+LS LKNGI IG KKFEFLAFSSSQLR+NSAWMF+  +  
Sbjct: 492  DLSKRMASGAEEKHTTVYGRVLSTLKNGIVIGDKKFEFLAFSSSQLRDNSAWMFSPIDGI 551

Query: 2161 CAGSIREWMGDFRRIRNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIEQSGYVFSDGI 1982
             A +IR+WMGDF  IRNVAK AAR+GQSF SSTETL+V+  E + I DI+   YVFSDGI
Sbjct: 552  TAANIRQWMGDFSGIRNVAKCAARMGQSFGSSTETLNVKPEEVERISDIKNGKYVFSDGI 611

Query: 1981 GKISAEFAKKVAAKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFESKNT 1802
            GKIS EFAKKVA KC      PSAFQIRY GYKGVVAVDPTS  KLSLR SM K+ S NT
Sbjct: 612  GKISLEFAKKVALKCGCSEKTPSAFQIRYGGYKGVVAVDPTSRYKLSLRGSMRKYSSNNT 671

Query: 1801 KLDVLAYSKYQPCFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALEAVQL 1622
            KLDVLAYSK+QPCFLNRQ+ITLLSTLG+ D +FE K ++AV  LD IL DPE A EA++L
Sbjct: 672  KLDVLAYSKFQPCFLNRQVITLLSTLGVQDNVFETKQKDAVSQLDKILVDPESAFEALEL 731

Query: 1621 MHPGETANMLRELLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMIGCLD 1442
            M PGE  N+L+E+L CGY PD+EPF+SM+LQ FR  +L EL+TK RIF+P GR+M+GCLD
Sbjct: 732  MSPGENVNVLKEMLFCGYLPDSEPFLSMMLQTFRGLKLSELKTKTRIFIPNGRSMMGCLD 791

Query: 1441 ESRSLKYGQVFVQVSCFENSRFHNNGLFFFNR---EHPAVVLEGKIIVAKNPCLHPGDVR 1271
            E+  L+YGQVFVQ S   N R H  GL   N    +    V+ GK+IVAKNPCLHPGDVR
Sbjct: 792  ETGILEYGQVFVQFSAIGNRRLHEFGLSKINESGSDQRVRVVVGKVIVAKNPCLHPGDVR 851

Query: 1270 ILEAVNVPHLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEPMEY 1091
            IL A++VP LHHMV+CVVFPQKGKRPHPNECSGSDLDGDIYFVSWDP L+P     PMEY
Sbjct: 852  ILTAIDVPALHHMVNCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPMLIPCHQGTPMEY 911

Query: 1090 APAPTMELDHDVTIEEVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLAKLF 911
             PAP  +LDH+VTIEE+ EYFTNY++NDSLGIIANAHTVFADK  +KA+   C+ LA LF
Sbjct: 912  EPAPNNDLDHEVTIEEIEEYFTNYMINDSLGIIANAHTVFADKEPMKADSTPCVDLANLF 971

Query: 910  SIAVDFPKTGVPAEIPPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCVQIK 731
            S+AVDFPKTGVPA+IP  L VKEYPDFM+K D+ TY+S+ +IGKL+R +K+  P    I 
Sbjct: 972  SVAVDFPKTGVPADIPQHLYVKEYPDFMDKTDKPTYQSRRVIGKLFREVKDLPPHTSAIT 1031

Query: 730  TFTKQVAVQSYDADMEVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGNIMK 551
            +FTK VA++SYD DMEVDGFE +L+DA ++K EYDFKL  LMDHYGIKTEAEI+SGNI+ 
Sbjct: 1032 SFTKSVALKSYDLDMEVDGFELYLDDAHWYKSEYDFKLAGLMDHYGIKTEAEIVSGNILS 1091

Query: 550  MSKIFTKNRDAEAIGRAVKVLRKEARSWFKDKHS----XXXXXXXXXNAKASAWYYVTYH 383
            ++K FTK RDAEAI  A++ LRKE R WFK+K S              AKASAWY++TYH
Sbjct: 1092 LAKSFTKRRDAEAIALAMRSLRKEVRGWFKEKRSVVDEGDYSLDDDVYAKASAWYHITYH 1151

Query: 382  HSYWGCY--NEGLKRPHFLSFPWCVYDKLTQIKQKKISQRKTASQVSLLQNRMRGLQI 215
              YWG Y   +G  R HF+SFPWC+YDKL  IK+ +I + + +   SL     R L +
Sbjct: 1152 PEYWGSYFEEDGRNRAHFISFPWCIYDKLIHIKRHRIGRGRNSRSSSLASTMERTLML 1209


>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
            vesca]
          Length = 1119

 Score = 1295 bits (3350), Expect = 0.0
 Identities = 667/1128 (59%), Positives = 837/1128 (74%), Gaps = 7/1128 (0%)
 Frame = -1

Query: 3589 KTFRISGFPSYVTASQVTTFLEKYTFAESIVALKLRPSKNS-RAFAIVQFSKNEDARDLI 3413
            KT ++ GFPS  TA  +  FLEK+T   S+ ALKLRP+K+  R +AI+QF     A  +I
Sbjct: 3    KTIQLHGFPSGQTAENIKEFLEKHTGEGSVFALKLRPAKSGGRFYAIIQFQSISQAEKII 62

Query: 3412 LMIQQRKLYYNGSYLTLHNVEHDIIPKPRKSMFVLKNVKLYLGCPLSPERLSVLWSVEEV 3233
             +   R L+Y  SYL      HDI+PKPR  +  L+++ L++GC ++ ++ SVLW   EV
Sbjct: 63   SLANAR-LWYGRSYLNARPA-HDIVPKPRTFLHSLRDLVLHVGCQVAKDKFSVLWGTAEV 120

Query: 3232 DVKFGFEMRKIDFYLSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAAPKLYK- 3056
             V FGF MR + F L Y    Y+L+L+Y++IW+I+LH    + +++LV Q+   P++Y+ 
Sbjct: 121  SVDFGFGMRNLQFRLLYRQKVYRLQLSYENIWQIELHHQRGRSAKYLVIQLYGNPRIYQQ 180

Query: 3055 ESSQNARSIYGDPIYNYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHKY 2876
            E   +  + Y D   NYF+D PDD WVRT DF+P S IGQS +LCL L    +LPD  + 
Sbjct: 181  EVCSSGGNGYED--MNYFRD-PDD-WVRTTDFTPGSCIGQSSSLCLVLTSDGELPDFEEN 236

Query: 2875 FFHYKEVDSRYAVENGFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQTLD 2696
            F +YK+ D ++ +ENG ++SRN DLVPIV  P+GI++ Y+ILFKIN +VQ G L G TLD
Sbjct: 237  FAYYKKTDGQFILENGSTFSRNRDLVPIVGSPAGIDLPYDILFKINLLVQQGCLSGPTLD 296

Query: 2695 REFYNLVCPCP-SRPNAYIERALEMMSVMDFSCFAPAKWLIEQYAKFSRSKHINSPTISL 2519
              FY LV P   SRP   IE AL+ +S +  SC+ PA WL E+Y K+  SK    P + +
Sbjct: 297  NNFYRLVDPRRISRP--CIEFALDKLSNLKESCYEPAVWLNEEYRKYMMSKKPPKPAL-I 353

Query: 2518 DSDSGLVYVHRVQVTPSKVFFYGPEINVSNRVLRHYDEVVDDFLRISFVDEDREKMHSNH 2339
              DSGLVYV RVQ+TPSKV+F GPE+NVSNR+LR Y   +D+FLR+SFVDE+ EK++S  
Sbjct: 354  SLDSGLVYVRRVQITPSKVYFSGPEVNVSNRILRQYSSDIDNFLRVSFVDEEMEKLYSTD 413

Query: 2338 ILERAVSVGSERRTALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMFC 2159
            +  R     S R+T +Y R+LS+L++GI +G KKFEFLAFSSSQLRENS WMFA ++   
Sbjct: 414  LSPRT----STRKTRIYNRVLSVLRDGIVVGKKKFEFLAFSSSQLRENSLWMFAPTDEDS 469

Query: 2158 AGSIREWMGDFRRIRNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIEQSG----YVFS 1991
            A +IR  MGDFR+IRNVAKYAARLGQSF SSTETLSV  +E ++IPD+  +     YVFS
Sbjct: 470  ADTIRAGMGDFRQIRNVAKYAARLGQSFGSSTETLSVGRNEMEVIPDVTVNSCGIKYVFS 529

Query: 1990 DGIGKISAEFAKKVAAKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFES 1811
            DGIGKISA+FA++VA KC  K   PSAFQIRY GYKGVVAVDPTSS+KLSLRKSMSK+ES
Sbjct: 530  DGIGKISADFAERVAKKCGYKAFTPSAFQIRYGGYKGVVAVDPTSSMKLSLRKSMSKYES 589

Query: 1810 KNTKLDVLAYSKYQPCFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALEA 1631
            +NTKLDVLA SKYQPCFLNRQLITLLSTL + D +F KK   AV  L+ ILTDP +A EA
Sbjct: 590  ENTKLDVLACSKYQPCFLNRQLITLLSTLEVQDHVFLKKQRAAVQQLNAILTDPLKAEEA 649

Query: 1630 VQLMHPGETANMLRELLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMIG 1451
            + LM  GE+ N+L+ELL+CGYKP+ EPF+SM+LQ FRAS+LLELRTK RIF+P GRAM+G
Sbjct: 650  LDLMSAGESTNVLKELLMCGYKPNVEPFLSMMLQTFRASKLLELRTKTRIFIPDGRAMMG 709

Query: 1450 CLDESRSLKYGQVFVQVSCFENSRFHNNGLFFFNREHPAVVLEGKIIVAKNPCLHPGDVR 1271
            CLDE+R+L+YGQVFVQ S     +  ++ +   +      ++EGK++VAKNPCLHPGDVR
Sbjct: 710  CLDETRTLEYGQVFVQFSGKRRRQLFDD-ICIHSSLDSCFIIEGKVVVAKNPCLHPGDVR 768

Query: 1270 ILEAVNVPHLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEPMEY 1091
            +L AVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WDPEL+P +  +PM+Y
Sbjct: 769  VLRAVNVPDLHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPELIPPKQIQPMDY 828

Query: 1090 APAPTMELDHDVTIEEVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLAKLF 911
             PAP +E+D DVTIEEV EYF NYIVNDSLGIIANAHTVFAD    KA  H CL+LAKLF
Sbjct: 829  TPAPPIEMDQDVTIEEVEEYFVNYIVNDSLGIIANAHTVFADSKLDKAMSHPCLQLAKLF 888

Query: 910  SIAVDFPKTGVPAEIPPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCVQIK 731
            SIAVDFPKTGVPAEIPP L  KEYPDFMEK D+ TY S  +IG+L+R +K+  P    I 
Sbjct: 889  SIAVDFPKTGVPAEIPPELYAKEYPDFMEKPDKRTYISHNVIGQLFREVKDIAPHDSSIA 948

Query: 730  TFTKQVAVQSYDADMEVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGNIMK 551
            +FT+QVA + YD DMEVDGFE++L DAF+ KG YD+KLGN++D+YGIKTEAEI+SG+IM 
Sbjct: 949  SFTRQVATKCYDPDMEVDGFEDYLEDAFYHKGNYDYKLGNMLDYYGIKTEAEILSGSIMT 1008

Query: 550  MSKIFTKNRDAEAIGRAVKVLRKEARSWFKDKHSXXXXXXXXXNAKASAWYYVTYHHSYW 371
            +SK FTK RDA+AI  AVK LRKEAR+WF +K +          AKASAWY+VTYH +Y+
Sbjct: 1009 LSKSFTKRRDADAINVAVKSLRKEARAWFNEKDTGIDSGDDDVYAKASAWYHVTYHPNYF 1068

Query: 370  GCYNEGLKRPHFLSFPWCVYDKLTQIKQKKISQRKTASQVSLLQNRMR 227
            G YNEG+ R HF+SFPWCV+DKL  IK++K++Q   A  +S L+NR+R
Sbjct: 1069 GLYNEGMNRAHFISFPWCVFDKLGHIKKEKVNQ---ARLISSLENRLR 1113


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score = 1293 bits (3345), Expect = 0.0
 Identities = 669/1116 (59%), Positives = 823/1116 (73%), Gaps = 9/1116 (0%)
 Frame = -1

Query: 3589 KTFRISGFPSYVTASQVTTFLEKYTFAESIVALKLRPSKN--SRAFAIVQFSKNEDARDL 3416
            KT ++ G PS V+A+++  FLEKYT   +I AL+++  K+  S   A VQF+    A  +
Sbjct: 3    KTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVSMTHAKVQFTSLRLAELI 62

Query: 3415 ILMIQQRKLYYNGSYLTLHNVEHDIIPKPRKSMFVLKNVKLYLGCPLSPERLSVLWSVEE 3236
            I + +Q  L+Y G+YL    ++ DIIPKPR  +  +  + L+ G  +S ER  VLW    
Sbjct: 63   ISLAKQ--LWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWKAIN 120

Query: 3235 VDVKFGFEMRKIDFYLSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAAPKLYK 3056
            V VKFGF +RK  F+LS+GS  YKLEL+ ++IW+IQL     Q ++FL+ Q++ AP++Y+
Sbjct: 121  VSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQIYE 180

Query: 3055 ESSQNARSIYGDPIYNYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIHKY 2876
            +              +YFK+ PDDQWVR IDF+PS SIGQS ALCLELP+   LP+  + 
Sbjct: 181  KDVS---------ALSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFCEN 231

Query: 2875 FFHYKEVDSRYAVENGFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQTLD 2696
            F  YKE D ++ +E+G S+S NL LVPIV PP G  + ++ILFKIN +VQNG L G TLD
Sbjct: 232  FARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGPTLD 291

Query: 2695 REFYNLVCPCPSRPN-AYIERALEMMSVMDFSCFAPAKWLIEQYAKFSRSKHINSPTISL 2519
              F+  V P   R N ++IE ALE +  ++  C+ P +WL EQY  +   +   SP ISL
Sbjct: 292  TNFFRWVDP--QRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTYISKQVAGSPAISL 349

Query: 2518 DSDSGLVYVHRVQVTPSKVFFYGPEINVSNRVLRHYDEVVDDFLRISFVDEDREKMHSNH 2339
            D+  GLVYV RVQ+TP KV+F GPE+NVSNRVLR+Y E +D+FLR+SF+DE+ EK+HS  
Sbjct: 350  DT--GLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTV 407

Query: 2338 ILERAVSVGSERRTALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNMFC 2159
            I  R  + G  RRT +Y RILSIL+NGI IG KKF+FLA SSSQLR+NSAWMFAS     
Sbjct: 408  ISPRMSNEG--RRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLT 465

Query: 2158 AGSIREWMGDFRRIRNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIEQ----SGYVFS 1991
            A  IR  MGDF +IRNVAKYAARLGQSFSSS ETL V  HE ++IPDIE     + YVFS
Sbjct: 466  AADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVFS 525

Query: 1990 DGIGKISAEFAKKVAAKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSKFES 1811
            DGIGKISAE A +VA KC  K S PSAFQIRY GYKGVVAVDPTSS KLSLRKSM K+ES
Sbjct: 526  DGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYES 585

Query: 1810 KNTKLDVLAYSKYQPCFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERALEA 1631
            +NT LDVL++SKY+PCFLNRQLITLLSTLG+ D +FEKK  EAV  LD IL DP RA EA
Sbjct: 586  ENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQEA 645

Query: 1630 VQLMHPGETANMLRELLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRAMIG 1451
            ++LM PGE  N+L+E+L+CGYKPDAEPF+SM+LQ FRA++LLELRTK RIFVP GR+M+G
Sbjct: 646  LELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMG 705

Query: 1450 CLDESRSLKYGQVFVQVSCFENSRFHNNGLFFFNR--EHPAVVLEGKIIVAKNPCLHPGD 1277
            CLDE+R+L+YG+VFVQ+S     +   + L F+     H   +LEGK++VAKNPCLHPGD
Sbjct: 706  CLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVAKNPCLHPGD 765

Query: 1276 VRILEAVNVPHLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEPM 1097
            VRIL AV+VP LHHMVDCVVFPQKG RPHP+ECSGSDLDGDIYFV WD +L+P R   PM
Sbjct: 766  VRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQINPM 825

Query: 1096 EYAPAPTMELDHDVTIEEVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLAK 917
            +Y PAPT  LDHDV IEEV EYFTNYI ND LGIIANAHTVFADK   KA C  C +LAK
Sbjct: 826  DYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPPCKELAK 885

Query: 916  LFSIAVDFPKTGVPAEIPPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCVQ 737
            LFSIA++FPKTGVPAEIP  L VKEYPDFMEK ++ TYES+ +IGKL+R +K+  P    
Sbjct: 886  LFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYD 945

Query: 736  IKTFTKQVAVQSYDADMEVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGNI 557
            +++FT+ VA+QSYDADMEVDGFE+++ DAF++K +YDFKLG+LMD  GI+TE+EI+SG+I
Sbjct: 946  VRSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILSGSI 1005

Query: 556  MKMSKIFTKNRDAEAIGRAVKVLRKEARSWFKDKHSXXXXXXXXXNAKASAWYYVTYHHS 377
            MKMSK F K +DAEAI  AV+ LRKEAR+WF    S          A ASAWY+VTYH  
Sbjct: 1006 MKMSKSFDKRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVTYHPY 1065

Query: 376  YWGCYNEGLKRPHFLSFPWCVYDKLTQIKQKKISQR 269
            YWGCYNEG+   HFLSFPWCVYDKL QIK+ K+S R
Sbjct: 1066 YWGCYNEGMYHDHFLSFPWCVYDKLIQIKRDKMSIR 1101


>gb|AAR91037.1| RNA-directed RNA polymerase 2 [Hordeum vulgare subsp. vulgare]
          Length = 1115

 Score = 1291 bits (3340), Expect = 0.0
 Identities = 670/1134 (59%), Positives = 826/1134 (72%), Gaps = 10/1134 (0%)
 Frame = -1

Query: 3598 MSSKTFRISGFPSYVTASQVTTFLEKYTFAESIVALKLRPSKN----SRAFAIVQFSKNE 3431
            M  KT ++SGFP+ V    V   LE+      + A+KLRP KN    SR+FAIVQF    
Sbjct: 1    MGGKTLQVSGFPATVNVHHVKDLLEQIVGLGKVCAVKLRPPKNISANSRSFAIVQFETEA 60

Query: 3430 DARDLILMIQQRKLYYNGSYLTLHNVEHDIIPKPRKSMFVLKNVKLYLGCPLSPERLSVL 3251
             A  ++   +   L    +YL +   E DII KPR ++F L++  L+ GC L    LSVL
Sbjct: 61   HASLVVNAARGNALRSGSNYLKVRPAERDIILKPRTALFNLEDATLHFGCLLRERVLSVL 120

Query: 3250 WSVEEVDVKFGFEMRKIDFYLSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAA 3071
            WS   V V+FGF M+KIDF L+Y    YKLEL+Y+SIWEIQL+     + +FL+ QV+AA
Sbjct: 121  WSGTGVSVEFGFAMKKIDFCLTYNLKKYKLELSYESIWEIQLYHPPGSQKKFLLIQVMAA 180

Query: 3070 PKLYKESSQNARSIYGDPIYNYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLP 2891
            PK+Y+++  ++ S+Y DP++NYF+D  DDQW RT DF+P +SIGQS  LCLELP    LP
Sbjct: 181  PKIYEQNLWHSGSMYDDPLFNYFRDDTDDQWTRTTDFTPLASIGQSYILCLELPADCYLP 240

Query: 2890 DIHKYFFHYKEVDSRYAVENGFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILI 2711
            +I +YF +YK  +  +    G SYS N   VPIV+     +V YEILFKIN +VQNGIL 
Sbjct: 241  NIREYFVYYKNHNHDFHCMRGHSYSSNSCFVPIVKSQYFTDVPYEILFKINNLVQNGILS 300

Query: 2710 GQTLDREFYNLVCP---CPSRPNAYIERALEMMSVMDFSCFAPAKWLIEQYAKFSRSKH- 2543
            G TLD  FY+LV P   C      +I+ ALE MS +  +C  P  WL E+Y +   S+H 
Sbjct: 301  GPTLDDNFYSLVSPGYVCID----HIKHALENMSYLKKTCLNPINWLSEKYKEIQISRHM 356

Query: 2542 INSPTISLDSDSGLVYVHRVQVTPSKVFFYGPEINVSNRVLRHYDEVVDDFLRISFVDED 2363
            + SP I+LD D GL YV+RVQ+TP+KV+FYGPEINVSNRV+R+Y   +++FLRISFVDED
Sbjct: 357  LTSPNIALDDD-GLAYVYRVQITPAKVYFYGPEINVSNRVVRNYSADLENFLRISFVDED 415

Query: 2362 REKMHSNHILERAVSVGSERRTALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWM 2183
             EK+ S  +  R+    +  RTALY RILS+L NGITIG+K FEFLAFSSSQLR+NSAWM
Sbjct: 416  CEKLRSTDLSPRSAPGNNASRTALYNRILSVLSNGITIGNKHFEFLAFSSSQLRDNSAWM 475

Query: 2182 FASSNMFCAGSIREWMGDFRRIRNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIEQ-S 2006
            FAS     A  IREWMG+FR IRNVAKYAARLGQSFS+STETL V  +E Q +P++   +
Sbjct: 476  FASRTGLSASDIREWMGNFRNIRNVAKYAARLGQSFSASTETLKVHKYEVQALPEVTNGT 535

Query: 2005 GYVFSDGIGKISAEFAKKVAAKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSM 1826
             YVFSDGIG ISA+FA +V+ KC+L    PSAFQIRY GYKGVVA+DP S  KLSLR SM
Sbjct: 536  KYVFSDGIGTISADFADEVSRKCKLARFTPSAFQIRYGGYKGVVAIDPRSHWKLSLRSSM 595

Query: 1825 SKFESKNTKLDVLAYSKYQPCFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPE 1646
            SKF S+N  LDVLAYSKYQPCFLNRQLITLLSTLG+ D IFE K + AV  L+ ++T+P+
Sbjct: 596  SKFPSENITLDVLAYSKYQPCFLNRQLITLLSTLGVRDNIFELKQQAAVMQLNRLVTEPQ 655

Query: 1645 RALEAVQLMHPGETANMLRELLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKG 1466
             A++A++LM  GE  N+++ELLLCGY+PD EP++SM+LQ FRAS+LLEL+TK+RIF+P+G
Sbjct: 656  AAIDAIELMPMGEITNVVKELLLCGYQPDVEPYLSMILQTFRASKLLELKTKSRIFIPEG 715

Query: 1465 RAMIGCLDESRSLKYGQVFVQVSCFENSRFHNNGLFFFNREHPAVVLEGKIIVAKNPCLH 1286
            RAM+GCLDE+R+LKYG+VF+Q S   N             E    V+ GK++VAKNPCLH
Sbjct: 716  RAMMGCLDETRTLKYGEVFIQASNSAN-------------ESDKFVVTGKVVVAKNPCLH 762

Query: 1285 PGDVRILEAVNVPHLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMA 1106
            PGD+RILEAV  P L HMV+CVVFPQ+G RPHPNECSGSDLDGDIYFVSWDP+L+P RM 
Sbjct: 763  PGDIRILEAVYTPVLDHMVNCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPDLIPTRMV 822

Query: 1105 EPMEYAPAPTMELDHDVTIEEVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLK 926
             PM+Y PAPT  LDHDV IEEV EYF NYIVN+SLGIIANAH VFADK  LKAE  +C+K
Sbjct: 823  APMDYTPAPTETLDHDVVIEEVHEYFANYIVNESLGIIANAHVVFADKESLKAESTQCIK 882

Query: 925  LAKLFSIAVDFPKTGVPAEIPPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPD 746
            LA+LFSIAVD+PKTGVPA+IP  L V+EYPDFMEK DR TY SKG+IGKLYR IK+  P 
Sbjct: 883  LAELFSIAVDYPKTGVPAQIPSKLHVREYPDFMEKLDRATYISKGVIGKLYREIKKQSP- 941

Query: 745  CVQIKTFTKQVAVQSYDADMEVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIIS 566
               I  FTK VA +SYD D+ VDG+++++ +A +FKGEYDFKLGNLM+HYGIK+EAEIIS
Sbjct: 942  --HIGHFTKDVARRSYDTDLIVDGYQDYITEAVWFKGEYDFKLGNLMEHYGIKSEAEIIS 999

Query: 565  GNIMKMSKIFTKNRDAEAIGRAVKVLRKEARSWFKDKHS-XXXXXXXXXNAKASAWYYVT 389
            G I+KM+K FTK+ DA+AI  AVK LRKEARSWF D  +           AKASAWY+VT
Sbjct: 1000 GCILKMAKNFTKSSDADAIRLAVKSLRKEARSWFSDMSADESGDVHEASYAKASAWYHVT 1059

Query: 388  YHHSYWGCYNEGLKRPHFLSFPWCVYDKLTQIKQKKISQRKTASQVSLLQNRMR 227
            YH  Y+GCYN+  +RPH +SFPWCVYDKL  IKQ+K  +R+       LQN MR
Sbjct: 1060 YHPEYYGCYNKIYERPHLISFPWCVYDKLLHIKQRKSLRRRLLD----LQNGMR 1109


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
            max] gi|571439308|ref|XP_006574822.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
            max] gi|571439310|ref|XP_006574823.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
            max]
          Length = 1125

 Score = 1290 bits (3337), Expect = 0.0
 Identities = 657/1127 (58%), Positives = 828/1127 (73%), Gaps = 13/1127 (1%)
 Frame = -1

Query: 3589 KTFRISGFPSYVTASQVTTFLEKYTFAESIVALKLRPSKNS--RAFAIVQFSKNEDARDL 3416
            KT  + GFP+ V  S V TF+E+YT   ++ A+KLR  K    RAFAI+QF+    A  +
Sbjct: 3    KTIELYGFPTSVNVSDVKTFVEQYTGEGTVFAIKLRHGKGRVPRAFAIIQFTTANSATSM 62

Query: 3415 ILMIQQ--RKLYYNGSYLTLHNVEHDIIPKPRKSMFVLKNVKLYLGCPLSPERLSVLWSV 3242
            +       R L Y  SYL    +E DI+P+PR  +  L +VKL  GC +S  R SVLW  
Sbjct: 63   MSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSVLWKK 122

Query: 3241 EEVDVKFGFEMRKIDFYLSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAAPKL 3062
            ++V V FG  MRK+ F  S+ +  YKLEL+Y++IW+I+LHR  ++ +++L+ Q++ AP++
Sbjct: 123  QDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNETTRYLLIQLLGAPRV 182

Query: 3061 YKESSQNARSIYGDPIYNYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLPDIH 2882
            ++     + +I+ DP++N+FKD PD+QW+R IDF+P S IGQS A+CLELP    LP+  
Sbjct: 183  FENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGRQLPNFR 242

Query: 2881 KYFFHYKEVDSRYAVENGFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILIGQT 2702
            + F +Y+E + +Y ++ G  +S+N  LVPIV PP G+++SY+ILFK+N +VQ+  L G  
Sbjct: 243  ENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKISYDILFKVNSLVQHACLAGPA 302

Query: 2701 LDREFYNLVCPCPSRPNAYIERALEMMSVMDFSCFAPAKWLIEQYAKFSRSK-HINSPTI 2525
            LD +FY LV P    P  +IE ALE +      C+ P KWL +QY  +  SK H  SP I
Sbjct: 303  LDGDFYRLVDP-RRMPREFIEYALEKIYYSKEFCYEPTKWLTDQYKTYLESKNHPRSPAI 361

Query: 2524 SLDSDSGLVYVHRVQVTPSKVFFYGPEINVSNRVLRHYDEVVDDFLRISFVDEDREKMHS 2345
            SLD+  GLVYV RVQ+TP KV+F GPE+NVSNRVLRH+ E +D+FLR+SFVDE+ +K+ S
Sbjct: 362  SLDT--GLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDEELDKLFS 419

Query: 2344 NHILERAVSVGSERRTALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFASSNM 2165
              +  R+      ++T +Y RILSILKNGI +G KKFEFLAFSSSQLRENS WMFA +  
Sbjct: 420  TDLSSRS----QNKKTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRENSLWMFAPTET 475

Query: 2164 FC-AGSIREWMGDFRRIRNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIEQ-----SG 2003
             C A  IR+WMG+F +IRNVAKYAARLGQSF SSTETLSV   E ++IPD+++     + 
Sbjct: 476  GCTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEIIPDVKKLTYDGNE 535

Query: 2002 YVFSDGIGKISAEFAKKVAAKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMS 1823
            YVFSDGIGKIS EFA+KVA KC      PSAFQIRY GYKGVVAVDP S  KLSLRKSM 
Sbjct: 536  YVFSDGIGKISLEFAQKVAKKCGYD-CTPSAFQIRYGGYKGVVAVDPKSCYKLSLRKSMR 594

Query: 1822 KFESKNTKLDVLAYSKYQPCFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPER 1643
            K++S NTKLDVLA SK+QPC+LNRQLI+LLSTLGI D +FEKK  E V  L+ ILTD  +
Sbjct: 595  KYDSDNTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETVNQLNTILTDSLK 654

Query: 1642 ALEAVQLMHPGETANMLRELLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGR 1463
            A E + LM  GE  N+L+E+L+CGYKP+ EPF+SM+LQ FRAS+LLELR K+RIF+PKGR
Sbjct: 655  AQEVLDLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLELRLKSRIFIPKGR 714

Query: 1462 AMIGCLDESRSLKYGQVFVQVSCFENSRFHNNGLFFFNREHPA-VVLEGKIIVAKNPCLH 1286
            AM+GCLDE+R+L+YGQVFVQ   F N+R  N    FF+ + P   +++GK++VAKNPCLH
Sbjct: 715  AMMGCLDETRTLEYGQVFVQ---FSNNRLQNLSDDFFSYDLPKNYMVKGKVVVAKNPCLH 771

Query: 1285 PGDVRILEAVNVPHLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMA 1106
            PGDVR+L+AV+VP L+HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV WD EL+P+R  
Sbjct: 772  PGDVRVLQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDHELIPSRPI 831

Query: 1105 EPMEYAPAPTMELDHDVTIEEVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLK 926
            +PM+Y    T+ELDHDV IEEV EYF NYIVNDSLGIIANAHTVFADK  LKA   +C+K
Sbjct: 832  DPMDYTAPATVELDHDVMIEEVEEYFANYIVNDSLGIIANAHTVFADKEHLKAMSDQCVK 891

Query: 925  LAKLFSIAVDFPKTGVPAEIPPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPD 746
            LA+LFS AVDFPKTGVPA IPP L VKEYPDFMEK D+ TY+S  +IGKL+R +KE    
Sbjct: 892  LARLFSTAVDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIGKLFREVKEISTS 951

Query: 745  CVQIKTFTKQVAVQSYDADMEVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIIS 566
               I +FTK VA  SYD +MEVDGF ++++DAF+ K  YD+KLGNLMD+YGIKTEAEI+ 
Sbjct: 952  AGSITSFTKLVARDSYDHEMEVDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKTEAEILG 1011

Query: 565  GNIMKMSKIFTKNRDAEAIGRAVKVLRKEARSWFKDKHS-XXXXXXXXXNAKASAWYYVT 389
            GNIMKMSK F K RDAEAI  AV+ LRKEAR+WF +  S           AKASAWY+VT
Sbjct: 1012 GNIMKMSKSFNKRRDAEAINMAVRSLRKEARAWFNENSSGDVDSGSSDVYAKASAWYHVT 1071

Query: 388  YHHSYWGCYNEGLKRPHFLSFPWCVYDKLTQIKQKKISQRKTASQVS 248
            YH SYWGCYNEG+ R H+LSF WCVY  L QIK++K+S R+++ + S
Sbjct: 1072 YHPSYWGCYNEGMNRDHYLSFSWCVYPLLVQIKKEKLSIRRSSLEYS 1118


>gb|ACH53360.1| RNA-directed RNA polymerase 1a [Hordeum vulgare]
          Length = 1114

 Score = 1287 bits (3331), Expect = 0.0
 Identities = 669/1134 (58%), Positives = 824/1134 (72%), Gaps = 10/1134 (0%)
 Frame = -1

Query: 3598 MSSKTFRISGFPSYVTASQVTTFLEKYTFAESIVALKLRPSKN----SRAFAIVQFSKNE 3431
            M  KT ++SGFP+ V    V   LE+      + A+KLRP KN    SR+FAIVQF    
Sbjct: 1    MGGKTLQVSGFPATVNVHHVKDLLEQIVGLGKVCAVKLRPPKNISANSRSFAIVQFETEA 60

Query: 3430 DARDLILMIQQRKLYYNGSYLTLHNVEHDIIPKPRKSMFVLKNVKLYLGCPLSPERLSVL 3251
             A  ++   +   L    +YL +   E DII KPR ++F L++  L+ GC L    LSVL
Sbjct: 61   HASLVVNAARGNALRSGSNYLKVRPAERDIILKPRTALFNLEDATLHFGCLLRERVLSVL 120

Query: 3250 WSVEEVDVKFGFEMRKIDFYLSYGSCSYKLELAYDSIWEIQLHRSYSQRSQFLVFQVVAA 3071
            WS   V V+FGF M+KIDF L+Y    YKLEL+Y+SIWEIQL+     + +FL+ QV+AA
Sbjct: 121  WSGTGVSVEFGFAMKKIDFCLTYNLKKYKLELSYESIWEIQLYHPPGSQKKFLLIQVMAA 180

Query: 3070 PKLYKESSQNARSIYGDPIYNYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYDLP 2891
            PK+Y+++  ++ S+Y DP++NYF+D  DDQW RT DF+P +SIGQS  LCLELP    LP
Sbjct: 181  PKIYEQNLWHSGSMYDDPLFNYFRDDTDDQWTRTTDFTPLASIGQSYILCLELPADCYLP 240

Query: 2890 DIHKYFFHYKEVDSRYAVENGFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGILI 2711
            +I +YF +YK  +  +    G SYS N   VPIV+     +V YEILFKIN +VQNGIL 
Sbjct: 241  NIREYFAYYKNHNHDFHCMRGHSYSSNSCFVPIVKSQYFTDVPYEILFKINNLVQNGILS 300

Query: 2710 GQTLDREFYNLVCP---CPSRPNAYIERALEMMSVMDFSCFAPAKWLIEQYAKFSRSKH- 2543
            G TLD  FY LV P   C      +I+ ALE MS +  +C  P  WL E+Y +   S+H 
Sbjct: 301  GPTLDDNFYRLVSPGYVCID----HIKHALENMSYLKKTCLNPINWLSEKYKEIQISRHM 356

Query: 2542 INSPTISLDSDSGLVYVHRVQVTPSKVFFYGPEINVSNRVLRHYDEVVDDFLRISFVDED 2363
            + SP I+LD D GL YV+RVQ+TP+KV+FYGPEINVSNRV+R+Y   +++FLRISFVDED
Sbjct: 357  LTSPNIALDDD-GLAYVYRVQITPAKVYFYGPEINVSNRVVRNYSADLENFLRISFVDED 415

Query: 2362 REKMHSNHILERAVSVGSERRTALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWM 2183
             EK+ S  +  R     +  RTALY RILS+L NGITIG+K FEFLAFSSSQLR+NSAWM
Sbjct: 416  CEKLRSTDLSPRYAPGNNASRTALYNRILSVLSNGITIGNKHFEFLAFSSSQLRDNSAWM 475

Query: 2182 FASSNMFCAGSIREWMGDFRRIRNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIEQ-S 2006
            FAS     A  IREWMG+FR IRNVAKYAARLGQSFS+STETL V  +E Q +P++   +
Sbjct: 476  FASRTGLSASDIREWMGNFRNIRNVAKYAARLGQSFSASTETLKVHKYEVQALPEVTNGT 535

Query: 2005 GYVFSDGIGKISAEFAKKVAAKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSM 1826
             YVFSDGIG ISA+FA +V+ KC+L    PSAFQIRY GYKGVVA+DP S  KLSLR SM
Sbjct: 536  KYVFSDGIGTISADFADEVSRKCKLARFTPSAFQIRYGGYKGVVAIDPRSHWKLSLRSSM 595

Query: 1825 SKFESKNTKLDVLAYSKYQPCFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPE 1646
            SKF S+N  LDVLAYSKYQPCFLNRQLITLLSTLG+ D IFE K + AV  L+ ++T+P+
Sbjct: 596  SKFPSENITLDVLAYSKYQPCFLNRQLITLLSTLGVRDNIFELKQQAAVMQLNRLVTEPQ 655

Query: 1645 RALEAVQLMHPGETANMLRELLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKG 1466
             A++A++LM  GE  N+++ELLLCGY+PD EP++SM+LQ FRAS+LLEL+TK+RIF+P+G
Sbjct: 656  AAIDAIELMPMGEITNVVKELLLCGYQPDVEPYLSMILQTFRASKLLELKTKSRIFIPEG 715

Query: 1465 RAMIGCLDESRSLKYGQVFVQVSCFENSRFHNNGLFFFNREHPAVVLEGKIIVAKNPCLH 1286
            RAM+GCLDE+R+LKYG+VF+Q S   N             E    V+ GK++VAKNPCLH
Sbjct: 716  RAMMGCLDETRTLKYGEVFIQASNSAN-------------ESDKFVVTGKVVVAKNPCLH 762

Query: 1285 PGDVRILEAVNVPHLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMA 1106
            PGD+RIL+AV  P L HMV+CVVFPQ+G RPHPNECSGSDLDGDIYFVSWDP+L+P RM 
Sbjct: 763  PGDIRILKAVYTPVLDHMVNCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPDLIPTRMV 822

Query: 1105 EPMEYAPAPTMELDHDVTIEEVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLK 926
             PM+Y PAPT  LDHDV IEEV EYF NYIVN+SLGIIANAH VFADK  LKAE  +C+K
Sbjct: 823  APMDYTPAPTETLDHDVVIEEVHEYFANYIVNESLGIIANAHVVFADKESLKAESTQCIK 882

Query: 925  LAKLFSIAVDFPKTGVPAEIPPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPD 746
            LA+LFSIAVD+PKTGVPA+IP  L V+EYPDFMEK DR TY SKG+IGKLYR IK+  P 
Sbjct: 883  LAELFSIAVDYPKTGVPAQIPSELHVREYPDFMEKLDRATYISKGVIGKLYREIKKQSP- 941

Query: 745  CVQIKTFTKQVAVQSYDADMEVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIIS 566
               I  FTK VA +SYD D+ VDG+++++ +A +FKGEYDFKLGNLM+HYGIK+EAEIIS
Sbjct: 942  --HIGHFTKDVARRSYDTDLIVDGYQDYITEAVWFKGEYDFKLGNLMEHYGIKSEAEIIS 999

Query: 565  GNIMKMSKIFTKNRDAEAIGRAVKVLRKEARSWFKDKHS-XXXXXXXXXNAKASAWYYVT 389
            G I+KM+K FTK+ DA+AI  AVK LRKEARSWF D  +           AKASAWY+VT
Sbjct: 1000 GCILKMAKNFTKSSDADAIRLAVKSLRKEARSWFSDMSADESGDVHEASYAKASAWYHVT 1059

Query: 388  YHHSYWGCYNEGLKRPHFLSFPWCVYDKLTQIKQKKISQRKTASQVSLLQNRMR 227
            YH  Y+GCYN+  +RPH +SFPWCVYDKL  IKQ+K  +R+       LQN MR
Sbjct: 1060 YHPEYYGCYNKIYERPHLISFPWCVYDKLLHIKQRKSLRRRLLD----LQNGMR 1109


>ref|NP_001183933.1| putative RNA-dependent RNA polymerase [Zea mays]
            gi|254838301|gb|ACT83377.1| putative RNA-dependent RNA
            polymerase [Zea mays]
          Length = 1108

 Score = 1285 bits (3325), Expect = 0.0
 Identities = 660/1111 (59%), Positives = 810/1111 (72%), Gaps = 7/1111 (0%)
 Frame = -1

Query: 3598 MSSKTFRISGFPSYVTASQVTTFLEKYTFAESIVALKLRP----SKNSRAFAIVQFSKNE 3431
            M  +T ++ GF    +A  V  FLE+   A +I ALKLR     S NSRAFAI QF   E
Sbjct: 1    MVGRTIQVQGFALTDSAEPVKLFLERIAGAGTICALKLRHPRNISANSRAFAIAQFQSQE 60

Query: 3430 DARDLILMIQQRKLYYNGSYLTLHNVEHDIIPKPRKSMFVLKNVKLYLGCPLSPERLSVL 3251
             A  +    Q+  L     YL     + DI+P+PR  MF L+++ L+LGC +    LS L
Sbjct: 61   SASLVENATQRLVLKIGRFYLRTRPADRDIVPRPRIPMFSLEDIVLHLGCLVKENILSAL 120

Query: 3250 WSVEEVDVKFGFEMRKIDFYLSYGSCSYKLELAYDSIWEIQLHR--SYSQRSQFLVFQVV 3077
            +    V V+FGF+M+KI FYLSY    +KLEL+Y+SIWE+QLHR  +Y  R+QFL+ QV 
Sbjct: 121  FRASNVSVQFGFDMKKIYFYLSYNFTKFKLELSYESIWEMQLHRPPAYRSRTQFLLIQVQ 180

Query: 3076 AAPKLYKESSQNARSIYGDPIYNYFKDVPDDQWVRTIDFSPSSSIGQSCALCLELPYRYD 2897
            AAPK+YK        ++ DP +N+F+D  D+QW RTIDF+PS+SIGQS         + +
Sbjct: 181  AAPKIYKLLPGRPGLMFEDPFFNWFRDEKDEQWTRTIDFTPSASIGQSSIYVWRCQQQCE 240

Query: 2896 LPDIHKYFFHYKEVDSRYAVENGFSYSRNLDLVPIVEPPSGIEVSYEILFKINYMVQNGI 2717
            LP I  YF +YKE +  +   NG+SYS    LVPIV+ P  IEV YEILFKIN++VQNG 
Sbjct: 241  LPRIGDYFVYYKEQNLDFECRNGYSYSCGSSLVPIVKSPDYIEVPYEILFKINHLVQNGT 300

Query: 2716 LIGQTLDREFYNLVCPCPSRPNAYIERALEMMSVMDFSCFAPAKWLIEQYAKFSRSKHIN 2537
            L G T+D  F+  V P    P  +I+RAL  M+ +  +C  P  WL  QY++  +S+H +
Sbjct: 301  LSGSTVDHSFFRHVSP-KFEPIDHIKRALLKMTYLKSTCLNPTDWLSVQYSRIRKSRHAS 359

Query: 2536 SPTISLDSDSGLVYVHRVQVTPSKVFFYGPEINVSNRVLRHYDEVVDDFLRISFVDEDRE 2357
                ++  D GLVYVHRVQVTP+KV+FYGPEINVSNRV+RH+   +D+FLRISFVDED E
Sbjct: 360  QKLSNISLDDGLVYVHRVQVTPAKVYFYGPEINVSNRVVRHFSADIDNFLRISFVDEDCE 419

Query: 2356 KMHSNHILERAVSVGSERRTALYWRILSILKNGITIGSKKFEFLAFSSSQLRENSAWMFA 2177
            K+ S  +  R+ S    RRTALY R+LS+L NGI IG K FEFLAFSSSQLR+NSAWMFA
Sbjct: 420  KLRSADLSPRSTSGNDARRTALYNRVLSVLSNGINIGDKHFEFLAFSSSQLRDNSAWMFA 479

Query: 2176 SSNMFCAGSIREWMGDFRRIRNVAKYAARLGQSFSSSTETLSVESHEFQLIPDIEQ-SGY 2000
            S     A  IR+WMGDFR IRNVAKYAA LGQSFSSSTETL V   E + IPDI   + Y
Sbjct: 480  SRQGLTASDIRKWMGDFRDIRNVAKYAAILGQSFSSSTETLKVHKSEVERIPDITNGTKY 539

Query: 1999 VFSDGIGKISAEFAKKVAAKCRLKGSVPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMSK 1820
            +FSDG+GKISA FA +VA KC+LK   PS FQIRY GYKGVVAVD  S+ KLSLRKSMSK
Sbjct: 540  IFSDGVGKISANFAVEVAMKCKLKRFAPSVFQIRYGGYKGVVAVDTRSNHKLSLRKSMSK 599

Query: 1819 FESKNTKLDVLAYSKYQPCFLNRQLITLLSTLGIIDCIFEKKIEEAVYDLDIILTDPERA 1640
            F+S+N  LDVLAYSKYQPCFLNRQLITLLSTLG+ D +FE K +EA+  L+ ++T+P+ A
Sbjct: 600  FQSENITLDVLAYSKYQPCFLNRQLITLLSTLGVSDNVFELKQKEALRQLNRMVTEPQAA 659

Query: 1639 LEAVQLMHPGETANMLRELLLCGYKPDAEPFVSMLLQAFRASRLLELRTKARIFVPKGRA 1460
             EAV+LM  GE  N+++ELL CGY+PD EP++SMLLQ FRAS+LLEL+TK+RIF+ +GRA
Sbjct: 660  REAVELMPMGEVTNVVKELLSCGYQPDHEPYLSMLLQTFRASKLLELKTKSRIFITQGRA 719

Query: 1459 MIGCLDESRSLKYGQVFVQVSCFENSRFHNNGLFFFNREHPAVVLEGKIIVAKNPCLHPG 1280
            M+GCLDE+ +LKYGQVFVQ S             +   +H  VV+ GK++VAKNPCLHPG
Sbjct: 720  MMGCLDETCTLKYGQVFVQAS-------------YSADDHRKVVVTGKVVVAKNPCLHPG 766

Query: 1279 DVRILEAVNVPHLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPELMPARMAEP 1100
            D+R+L+AV+VP LHH+ DCVVFPQ+G RPHPNECSGSDLDGDIYFVSWDP L+P+R+ +P
Sbjct: 767  DIRVLQAVDVPALHHLFDCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPHLIPSRLVDP 826

Query: 1099 MEYAPAPTMELDHDVTIEEVMEYFTNYIVNDSLGIIANAHTVFADKSKLKAECHECLKLA 920
            M+Y PA    LDHDVTIEE+ EYFTNYIVN+SLGIIANAH VF D+ ++KAE   C++LA
Sbjct: 827  MDYTPASAETLDHDVTIEEIQEYFTNYIVNESLGIIANAHVVFTDQERMKAESPPCVQLA 886

Query: 919  KLFSIAVDFPKTGVPAEIPPTLQVKEYPDFMEKQDRVTYESKGIIGKLYRAIKEHKPDCV 740
            KLFSIAVDFPKTGVPA IP  L VKEYPDFMEK D+VTYESKG+IGKLYR IK+H P   
Sbjct: 887  KLFSIAVDFPKTGVPALIPHELHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTP--- 943

Query: 739  QIKTFTKQVAVQSYDADMEVDGFEEHLNDAFFFKGEYDFKLGNLMDHYGIKTEAEIISGN 560
             IK FT++VA +SYD D+ VDG+E+++ +A  FK EYDF+LGNLMDHYGIK+EAEIISG 
Sbjct: 944  HIKHFTREVARRSYDTDLIVDGYEDYITEAIEFKEEYDFRLGNLMDHYGIKSEAEIISGC 1003

Query: 559  IMKMSKIFTKNRDAEAIGRAVKVLRKEARSWFKDKHSXXXXXXXXXNAKASAWYYVTYHH 380
            I+KM+K FTK+ DA+AI  AV+ LRKEARSWF +  S          AKASAWY+VTYH 
Sbjct: 1004 ILKMAKNFTKSSDADAIRMAVRSLRKEARSWFNEM-STGEDGQDAMEAKASAWYHVTYHQ 1062

Query: 379  SYWGCYNEGLKRPHFLSFPWCVYDKLTQIKQ 287
             YWG YNEG  RPH +SFPWCVYDKL  IKQ
Sbjct: 1063 QYWGSYNEGYDRPHLISFPWCVYDKLVAIKQ 1093