BLASTX nr result
ID: Zingiber23_contig00013745
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00013745
(312 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AGE44298.1| whirly transcription factor domain containing pro... 118 9e-25
gb|EOY16919.1| Whirly 2, putative isoform 2 [Theobroma cacao] 91 2e-16
gb|EOY16918.1| Whirly 2, putative isoform 1 [Theobroma cacao] 91 2e-16
ref|XP_004250749.1| PREDICTED: single-stranded DNA-bindig protei... 87 2e-15
gb|EMS54540.1| hypothetical protein TRIUR3_19131 [Triticum urartu] 87 3e-15
ref|NP_001275393.1| single-stranded DNA-bindig protein WHY2, mit... 86 7e-15
ref|NP_001045956.1| Os02g0158400 [Oryza sativa Japonica Group] g... 85 9e-15
ref|XP_006646903.1| PREDICTED: single-stranded DNA-binding prote... 85 1e-14
gb|ACG35575.1| DNA binding protein [Zea mays] 85 1e-14
gb|EMT15491.1| hypothetical protein F775_24520 [Aegilops tauschii] 84 1e-14
gb|AFW66475.1| DNA binding protein isoform 1 [Zea mays] gi|41392... 84 1e-14
gb|ACF85629.1| unknown [Zea mays] gi|323388661|gb|ADX60135.1| PB... 84 1e-14
ref|XP_004250750.1| PREDICTED: single-stranded DNA-bindig protei... 84 3e-14
ref|XP_003574931.1| PREDICTED: uncharacterized protein LOC100825... 84 3e-14
ref|XP_006352086.1| PREDICTED: Why2 protein [Solanum tuberosum] 81 1e-13
ref|NP_001152589.1| LOC100286229 [Zea mays] gi|195657845|gb|ACG4... 81 1e-13
ref|XP_004951836.1| PREDICTED: single-stranded DNA-bindig protei... 81 2e-13
pdb|4KOP|A Chain A, Crystal Structure Of Why2 From Arabidopsis T... 80 4e-13
gb|AAG51881.1|AC016162_2 unknown protein; 79476-81015 [Arabidops... 80 4e-13
ref|XP_002888827.1| ATWHY2 [Arabidopsis lyrata subsp. lyrata] gi... 80 4e-13
>gb|AGE44298.1| whirly transcription factor domain containing protein [Musa AB
Group]
Length = 245
Score = 118 bits (295), Expect = 9e-25
Identities = 60/110 (54%), Positives = 77/110 (70%), Gaps = 13/110 (11%)
Frame = -3
Query: 292 LGRTADVKVSLWLSSKCGISTSGPDLATDARST-----------SFKRFADYTIFKGKAA 146
L R +VK S WLSS+ ISTSGP L D S+ S +R+ +YT+FKGKAA
Sbjct: 14 LERATNVKDSFWLSSQRSISTSGPGLVNDGSSSVRPPFSPTGSSSVRRYVEYTVFKGKAA 73
Query: 145 MALSPILPTFREVNS--SKYCKRGCVMMTFWPAIATKKYDWNRKQVFALS 2
+++SPILPTFREV+S S+ K+GCV++TFWPAI +KYDW +KQ FALS
Sbjct: 74 LSVSPILPTFREVDSGVSRVHKKGCVILTFWPAIGQRKYDWQKKQAFALS 123
>gb|EOY16919.1| Whirly 2, putative isoform 2 [Theobroma cacao]
Length = 198
Score = 90.5 bits (223), Expect = 2e-16
Identities = 49/112 (43%), Positives = 72/112 (64%), Gaps = 12/112 (10%)
Frame = -3
Query: 301 SRNLG-------RTADVKVSLW---LSSKCGISTSGPDLATDARSTSFKRFADYTIFKGK 152
SRNL + DV+ +LW S+ ISTS D A+ ST+ + A YT++KGK
Sbjct: 7 SRNLSSQTLLSAKRGDVRDALWSHAFESRAAISTSIHDFASKGNSTA-RVIAPYTVYKGK 65
Query: 151 AAMALSPILPTFREVNSS--KYCKRGCVMMTFWPAIATKKYDWNRKQVFALS 2
AA +++P+LPTF +++S K +RG +M+TFWPA+ +KYDW ++Q FALS
Sbjct: 66 AAFSVTPLLPTFSKIDSGNLKLDRRGAMMLTFWPAVGERKYDWEKRQRFALS 117
>gb|EOY16918.1| Whirly 2, putative isoform 1 [Theobroma cacao]
Length = 236
Score = 90.5 bits (223), Expect = 2e-16
Identities = 49/112 (43%), Positives = 72/112 (64%), Gaps = 12/112 (10%)
Frame = -3
Query: 301 SRNLG-------RTADVKVSLW---LSSKCGISTSGPDLATDARSTSFKRFADYTIFKGK 152
SRNL + DV+ +LW S+ ISTS D A+ ST+ + A YT++KGK
Sbjct: 7 SRNLSSQTLLSAKRGDVRDALWSHAFESRAAISTSIHDFASKGNSTA-RVIAPYTVYKGK 65
Query: 151 AAMALSPILPTFREVNSS--KYCKRGCVMMTFWPAIATKKYDWNRKQVFALS 2
AA +++P+LPTF +++S K +RG +M+TFWPA+ +KYDW ++Q FALS
Sbjct: 66 AAFSVTPLLPTFSKIDSGNLKLDRRGAMMLTFWPAVGERKYDWEKRQRFALS 117
>ref|XP_004250749.1| PREDICTED: single-stranded DNA-bindig protein WHY2,
mitochondrial-like isoform 1 [Solanum lycopersicum]
Length = 238
Score = 87.4 bits (215), Expect = 2e-15
Identities = 42/97 (43%), Positives = 63/97 (64%), Gaps = 5/97 (5%)
Frame = -3
Query: 277 DVKVSLW---LSSKCGISTSGPDLATDARSTSFKRFADYTIFKGKAAMALSPILPTFREV 107
DVK S+W +++ ST D+ DA + FA Y++FKGKAA++ P LPTF +
Sbjct: 23 DVKGSIWQNAINTFAAFSTVRQDVVADAGKREGRVFAPYSVFKGKAALSAEPRLPTFNRL 82
Query: 106 NSS--KYCKRGCVMMTFWPAIATKKYDWNRKQVFALS 2
+S K +RG +M+TFWP++ +KYDW ++Q+FALS
Sbjct: 83 DSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALS 119
>gb|EMS54540.1| hypothetical protein TRIUR3_19131 [Triticum urartu]
Length = 364
Score = 86.7 bits (213), Expect = 3e-15
Identities = 49/107 (45%), Positives = 73/107 (68%), Gaps = 6/107 (5%)
Frame = -3
Query: 304 VSRNLGR-TADVKVSLW---LSSKCGISTSGPDLATDARSTSFKRFADYTIFKGKAAMAL 137
+S +GR D+K LW L+ K +STS ++ +A S K++A YT+FKGKAA+++
Sbjct: 24 LSMKIGRGVTDLKDVLWSGSLTFKHALSTSAANVDENA---SVKKYASYTVFKGKAALSI 80
Query: 136 SPILPTFREVNS--SKYCKRGCVMMTFWPAIATKKYDWNRKQVFALS 2
SPILP F +V S S+ + G VM+TF+PA+ +KYD+ +KQ+FALS
Sbjct: 81 SPILPLFTKVESGGSRVDRNGSVMLTFFPAVGQRKYDYTKKQLFALS 127
>ref|NP_001275393.1| single-stranded DNA-bindig protein WHY2, mitochondrial [Solanum
tuberosum] gi|426021772|sp|D9J034.1|WHY2_SOLTU RecName:
Full=Single-stranded DNA-bindig protein WHY2,
mitochondrial; AltName: Full=Protein WHIRLY 2;
Short=StWHY2; Flags: Precursor
gi|298359665|gb|ADI77438.1| Why2 protein [Solanum
tuberosum]
Length = 238
Score = 85.5 bits (210), Expect = 7e-15
Identities = 41/96 (42%), Positives = 63/96 (65%), Gaps = 5/96 (5%)
Frame = -3
Query: 274 VKVSLW---LSSKCGISTSGPDLATDARSTSFKRFADYTIFKGKAAMALSPILPTFREVN 104
VK S+W +++ G ST ++ DA + FA Y++FKGKAA++ P LPTF ++
Sbjct: 24 VKGSIWQHAINTFAGFSTVRQNVVADAGKREGRVFAPYSVFKGKAALSAEPRLPTFNRLD 83
Query: 103 SS--KYCKRGCVMMTFWPAIATKKYDWNRKQVFALS 2
S K +RG +M+TFWP++ +KYDW ++Q+FALS
Sbjct: 84 SGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALS 119
>ref|NP_001045956.1| Os02g0158400 [Oryza sativa Japonica Group]
gi|50251252|dbj|BAD28032.1| putative Chain C, Structure
Of The Plant Transcriptional Regulator Pbf-2 [Oryza
sativa Japonica Group] gi|50252182|dbj|BAD28177.1|
putative Chain C, Structure Of The Plant Transcriptional
Regulator Pbf-2 [Oryza sativa Japonica Group]
gi|113535487|dbj|BAF07870.1| Os02g0158400 [Oryza sativa
Japonica Group] gi|215692593|dbj|BAG88013.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|215704516|dbj|BAG94149.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|215740785|dbj|BAG96941.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|218190103|gb|EEC72530.1| hypothetical protein
OsI_05924 [Oryza sativa Indica Group]
gi|222622212|gb|EEE56344.1| hypothetical protein
OsJ_05450 [Oryza sativa Japonica Group]
Length = 228
Score = 85.1 bits (209), Expect = 9e-15
Identities = 45/100 (45%), Positives = 69/100 (69%), Gaps = 5/100 (5%)
Frame = -3
Query: 286 RTADVKVSLW---LSSKCGISTSGPDLATDARSTSFKRFADYTIFKGKAAMALSPILPTF 116
R D+K +LW L+ + +ST D +TS ++FA YT+FKGKAA+++ PILP+F
Sbjct: 14 RVTDLKDALWSGSLTFQHALSTFAAD-----ENTSGRKFASYTVFKGKAALSMQPILPSF 68
Query: 115 REVNS--SKYCKRGCVMMTFWPAIATKKYDWNRKQVFALS 2
++ S S+ K G VM+TF+PA+ +KYD+++KQ+FALS
Sbjct: 69 SKLESGGSRVNKNGSVMLTFFPAVGQRKYDYSKKQLFALS 108
>ref|XP_006646903.1| PREDICTED: single-stranded DNA-binding protein WHY2,
mitochondrial-like [Oryza brachyantha]
Length = 230
Score = 84.7 bits (208), Expect = 1e-14
Identities = 43/100 (43%), Positives = 69/100 (69%), Gaps = 5/100 (5%)
Frame = -3
Query: 286 RTADVKVSLW---LSSKCGISTSGPDLATDARSTSFKRFADYTIFKGKAAMALSPILPTF 116
R D+K +LW L+ + +ST D +TS ++FA YT+FKGKAA+++ P+LP+F
Sbjct: 16 RVTDLKDALWSGSLTFQHALSTLSAD-----ENTSGRKFASYTVFKGKAALSMHPVLPSF 70
Query: 115 REVNS--SKYCKRGCVMMTFWPAIATKKYDWNRKQVFALS 2
++ S S+ + G VM+TF+PA+ +KYD+++KQ+FALS
Sbjct: 71 SKLESGGSRVSRNGSVMLTFFPAVGQRKYDYSKKQIFALS 110
>gb|ACG35575.1| DNA binding protein [Zea mays]
Length = 230
Score = 84.7 bits (208), Expect = 1e-14
Identities = 47/101 (46%), Positives = 67/101 (66%), Gaps = 6/101 (5%)
Frame = -3
Query: 286 RTADVKVSLWLSSKCGISTSGPDLATDARST----SFKRFADYTIFKGKAAMALSPILPT 119
R D+K SLW CG T ++T A + S K+FA YT+FKGKAA+++ PILP+
Sbjct: 14 RGFDLKESLW----CGSLTFQQAVSTAATNLDGNLSGKKFASYTVFKGKAALSIHPILPS 69
Query: 118 FREVNS--SKYCKRGCVMMTFWPAIATKKYDWNRKQVFALS 2
F ++ S S+ K G VM+TF+PA+ +KYD+ +KQ+FALS
Sbjct: 70 FSKLESGGSRVSKNGSVMLTFFPAVGQRKYDYTKKQLFALS 110
>gb|EMT15491.1| hypothetical protein F775_24520 [Aegilops tauschii]
Length = 352
Score = 84.3 bits (207), Expect = 1e-14
Identities = 51/121 (42%), Positives = 75/121 (61%), Gaps = 18/121 (14%)
Frame = -3
Query: 310 FLVSRNLGRTADVKVSLW---LSSKCGISTSGPDL-------------ATDARSTSFKRF 179
FL S + G T D+K LW L+ K +STS ++ + A + S K++
Sbjct: 7 FLPSTSRGVT-DLKDVLWSGSLTFKHALSTSAANVDARYMLQSLTARTSLSAENASVKKY 65
Query: 178 ADYTIFKGKAAMALSPILPTFREVNS--SKYCKRGCVMMTFWPAIATKKYDWNRKQVFAL 5
A YT+FKGKAA+++SPILP F +V S S+ + G VM+TF+PA+ +KYD+ +KQ+FAL
Sbjct: 66 ASYTVFKGKAALSISPILPLFTKVESGGSRVDRNGSVMLTFFPAVGQRKYDYTKKQLFAL 125
Query: 4 S 2
S
Sbjct: 126 S 126
>gb|AFW66475.1| DNA binding protein isoform 1 [Zea mays]
gi|413926544|gb|AFW66476.1| DNA binding protein isoform
2 [Zea mays]
Length = 274
Score = 84.3 bits (207), Expect = 1e-14
Identities = 46/100 (46%), Positives = 69/100 (69%), Gaps = 5/100 (5%)
Frame = -3
Query: 286 RTADVKVSLW---LSSKCGISTSGPDLATDARSTSFKRFADYTIFKGKAAMALSPILPTF 116
R D+K SLW L+ + +ST+ +L + S K+FA YT+FKGKAA+++ PILP+F
Sbjct: 56 RGFDLKESLWSGSLTFQQAVSTAATNLDGNL---SGKKFASYTVFKGKAALSIHPILPSF 112
Query: 115 REVNS--SKYCKRGCVMMTFWPAIATKKYDWNRKQVFALS 2
++ S S+ K G VM+TF+PA+ +KYD+ +KQ+FALS
Sbjct: 113 SKLESGGSRVSKNGSVMLTFFPAVGQRKYDYTKKQLFALS 152
>gb|ACF85629.1| unknown [Zea mays] gi|323388661|gb|ADX60135.1| PBF-2 like
transcription factor [Zea mays]
gi|323388771|gb|ADX60190.1| PBF-2 like transcription
factor [Zea mays]
Length = 232
Score = 84.3 bits (207), Expect = 1e-14
Identities = 46/100 (46%), Positives = 69/100 (69%), Gaps = 5/100 (5%)
Frame = -3
Query: 286 RTADVKVSLW---LSSKCGISTSGPDLATDARSTSFKRFADYTIFKGKAAMALSPILPTF 116
R D+K SLW L+ + +ST+ +L + S K+FA YT+FKGKAA+++ PILP+F
Sbjct: 14 RGFDLKESLWSGSLTFQQAVSTAATNLDGNL---SGKKFASYTVFKGKAALSIHPILPSF 70
Query: 115 REVNS--SKYCKRGCVMMTFWPAIATKKYDWNRKQVFALS 2
++ S S+ K G VM+TF+PA+ +KYD+ +KQ+FALS
Sbjct: 71 SKLESGGSRVSKNGSVMLTFFPAVGQRKYDYTKKQLFALS 110
>ref|XP_004250750.1| PREDICTED: single-stranded DNA-bindig protein WHY2,
mitochondrial-like isoform 2 [Solanum lycopersicum]
Length = 235
Score = 83.6 bits (205), Expect = 3e-14
Identities = 41/97 (42%), Positives = 63/97 (64%), Gaps = 5/97 (5%)
Frame = -3
Query: 277 DVKVSLW---LSSKCGISTSGPDLATDARSTSFKRFADYTIFKGKAAMALSPILPTFREV 107
DVK S+W +++ ST D+ D + + FA Y++FKGKAA++ P LPTF +
Sbjct: 21 DVKGSIWQNAINTFAAFSTVRQDVVADGKREG-RVFAPYSVFKGKAALSAEPRLPTFNRL 79
Query: 106 NSS--KYCKRGCVMMTFWPAIATKKYDWNRKQVFALS 2
+S K +RG +M+TFWP++ +KYDW ++Q+FALS
Sbjct: 80 DSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALS 116
>ref|XP_003574931.1| PREDICTED: uncharacterized protein LOC100825843 [Brachypodium
distachyon]
Length = 231
Score = 83.6 bits (205), Expect = 3e-14
Identities = 44/100 (44%), Positives = 70/100 (70%), Gaps = 5/100 (5%)
Frame = -3
Query: 286 RTADVKVSLWLSS---KCGISTSGPDLATDARSTSFKRFADYTIFKGKAAMALSPILPTF 116
+ +D+K LW S + +STS ++ +A S ++FA YT+FKGKAA+++SPILP F
Sbjct: 14 KVSDLKDVLWSGSVTFEHALSTSAANVDENA---SARKFASYTVFKGKAALSISPILPNF 70
Query: 115 REVNS--SKYCKRGCVMMTFWPAIATKKYDWNRKQVFALS 2
++ S S+ K G VM+TF+PA+ ++YD+++KQ+FALS
Sbjct: 71 TKIESGGSRVKKNGSVMLTFFPAVGQRQYDYSKKQLFALS 110
>ref|XP_006352086.1| PREDICTED: Why2 protein [Solanum tuberosum]
Length = 238
Score = 81.3 bits (199), Expect = 1e-13
Identities = 39/95 (41%), Positives = 60/95 (63%), Gaps = 5/95 (5%)
Frame = -3
Query: 274 VKVSLW---LSSKCGISTSGPDLATDARSTSFKRFADYTIFKGKAAMALSPILPTFREVN 104
VK S+W +++ G ST ++ DA + FA Y++FKGKAA++ P LPTF ++
Sbjct: 24 VKGSIWQHAINTFAGFSTVRQNVVADAGKREGRVFAPYSVFKGKAALSAEPRLPTFNRLD 83
Query: 103 SS--KYCKRGCVMMTFWPAIATKKYDWNRKQVFAL 5
S K +RG +M+TFWP++ +KYDW ++QV L
Sbjct: 84 SGGVKLNRRGVIMLTFWPSVGERKYDWEKRQVMCL 118
>ref|NP_001152589.1| LOC100286229 [Zea mays] gi|195657845|gb|ACG48390.1| DNA binding
protein [Zea mays]
Length = 232
Score = 81.3 bits (199), Expect = 1e-13
Identities = 45/100 (45%), Positives = 68/100 (68%), Gaps = 5/100 (5%)
Frame = -3
Query: 286 RTADVKVSLW---LSSKCGISTSGPDLATDARSTSFKRFADYTIFKGKAAMALSPILPTF 116
R D+K SLW L+ + +ST+ +L + S K+FA YT+FKGKAA+++ PIL +F
Sbjct: 14 RGFDLKESLWSGSLTFQQAVSTAATNLDGNL---SGKKFASYTVFKGKAALSIHPILXSF 70
Query: 115 REVNS--SKYCKRGCVMMTFWPAIATKKYDWNRKQVFALS 2
++ S S+ K G VM+TF+PA+ +KYD+ +KQ+FALS
Sbjct: 71 SKLESGGSRVSKNGSVMLTFFPAVGQRKYDYTKKQLFALS 110
>ref|XP_004951836.1| PREDICTED: single-stranded DNA-bindig protein WHY2,
mitochondrial-like [Setaria italica]
Length = 229
Score = 80.9 bits (198), Expect = 2e-13
Identities = 44/100 (44%), Positives = 68/100 (68%), Gaps = 5/100 (5%)
Frame = -3
Query: 286 RTADVKVSLW---LSSKCGISTSGPDLATDARSTSFKRFADYTIFKGKAAMALSPILPTF 116
R D K +LW L+ + +STS +L ++S K+FA YT+FKGKAA+++ PILP+F
Sbjct: 14 RGFDPKEALWSGSLTFQQAVSTSAANLD---ENSSGKKFASYTVFKGKAALSIHPILPSF 70
Query: 115 --REVNSSKYCKRGCVMMTFWPAIATKKYDWNRKQVFALS 2
E +S+ + G VM+TF+PA+ +KYD+ +KQ+F+LS
Sbjct: 71 CKMESGASRINRNGSVMLTFFPAVGQRKYDYTKKQLFSLS 110
>pdb|4KOP|A Chain A, Crystal Structure Of Why2 From Arabidopsis Thaliana
gi|557805000|pdb|4KOP|B Chain B, Crystal Structure Of
Why2 From Arabidopsis Thaliana gi|557805001|pdb|4KOP|C
Chain C, Crystal Structure Of Why2 From Arabidopsis
Thaliana gi|557805002|pdb|4KOP|D Chain D, Crystal
Structure Of Why2 From Arabidopsis Thaliana
Length = 177
Score = 79.7 bits (195), Expect = 4e-13
Identities = 38/71 (53%), Positives = 52/71 (73%), Gaps = 2/71 (2%)
Frame = -3
Query: 208 DARSTSFKRFADYTIFKGKAAMALSPILPTFREVNSS--KYCKRGCVMMTFWPAIATKKY 35
DA S + FA Y+IFKGKAA+++ P+LP+F E++S + +RG +MMTF PAI +KY
Sbjct: 3 DAAKPSGRLFAPYSIFKGKAALSVEPVLPSFTEIDSGNLRIDRRGSLMMTFMPAIGERKY 62
Query: 34 DWNRKQVFALS 2
DW +KQ FALS
Sbjct: 63 DWEKKQKFALS 73
>gb|AAG51881.1|AC016162_2 unknown protein; 79476-81015 [Arabidopsis thaliana]
Length = 237
Score = 79.7 bits (195), Expect = 4e-13
Identities = 38/71 (53%), Positives = 52/71 (73%), Gaps = 2/71 (2%)
Frame = -3
Query: 208 DARSTSFKRFADYTIFKGKAAMALSPILPTFREVNSS--KYCKRGCVMMTFWPAIATKKY 35
DA S + FA Y+IFKGKAA+++ P+LP+F E++S + +RG +MMTF PAI +KY
Sbjct: 45 DAAKPSGRLFAPYSIFKGKAALSVEPVLPSFTEIDSGNLRIDRRGSLMMTFMPAIGERKY 104
Query: 34 DWNRKQVFALS 2
DW +KQ FALS
Sbjct: 105 DWEKKQKFALS 115
>ref|XP_002888827.1| ATWHY2 [Arabidopsis lyrata subsp. lyrata]
gi|297334668|gb|EFH65086.1| ATWHY2 [Arabidopsis lyrata
subsp. lyrata]
Length = 242
Score = 79.7 bits (195), Expect = 4e-13
Identities = 44/89 (49%), Positives = 59/89 (66%), Gaps = 3/89 (3%)
Frame = -3
Query: 259 WLSSKCGISTSGPDLA-TDARSTSFKRFADYTIFKGKAAMALSPILPTFREVNSS--KYC 89
W SS ST G + DA S + FA Y+IFKGKAA+++ P+LP+F E++S +
Sbjct: 36 WSSS----STPGRGFSGKDAPKPSGRLFAPYSIFKGKAALSVEPVLPSFTEIDSGNLRID 91
Query: 88 KRGCVMMTFWPAIATKKYDWNRKQVFALS 2
+RG +MMTF PAI +KYDW +KQ FALS
Sbjct: 92 RRGSLMMTFMPAIGERKYDWEKKQKFALS 120