BLASTX nr result
ID: Zingiber23_contig00012081
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00012081
(598 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002527668.1| ribonucleoprotein, chloroplast, putative [Ri... 242 5e-62
ref|XP_004164674.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop... 242 6e-62
ref|XP_004148763.1| PREDICTED: 29 kDa ribonucleoprotein B, chlor... 242 6e-62
ref|XP_006352864.1| PREDICTED: 28 kDa ribonucleoprotein, chlorop... 231 1e-58
emb|CBI33876.3| unnamed protein product [Vitis vinifera] 230 3e-58
ref|XP_002279685.1| PREDICTED: 29 kDa ribonucleoprotein B, chlor... 230 3e-58
ref|XP_004245902.1| PREDICTED: 33 kDa ribonucleoprotein, chlorop... 227 2e-57
ref|NP_001053710.1| Os04g0591000 [Oryza sativa Japonica Group] g... 227 2e-57
emb|CAH67960.1| OSIGBa0142I02-OSIGBa0101B20.3 [Oryza sativa Indi... 227 2e-57
ref|XP_006652723.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop... 226 4e-57
gb|EOY23975.1| RNA-binding family protein isoform 1 [Theobroma c... 225 6e-57
gb|EAY95360.1| hypothetical protein OsI_17193 [Oryza sativa Indi... 224 2e-56
gb|EXB32996.1| 31 kDa ribonucleoprotein [Morus notabilis] 223 3e-56
ref|NP_181084.1| RNA-binding (RRM/RBD/RNP motifs) family protein... 223 4e-56
ref|XP_006428430.1| hypothetical protein CICLE_v10012439mg [Citr... 221 2e-55
ref|XP_006294626.1| hypothetical protein CARUB_v10023663mg [Caps... 220 3e-55
ref|NP_001242808.1| uncharacterized protein LOC100793319 [Glycin... 220 3e-55
ref|XP_004976651.1| PREDICTED: 33 kDa ribonucleoprotein, chlorop... 219 3e-55
ref|XP_003534278.1| PREDICTED: 29 kDa ribonucleoprotein, chlorop... 219 4e-55
ref|XP_002879549.1| hypothetical protein ARALYDRAFT_482506 [Arab... 219 6e-55
>ref|XP_002527668.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223532973|gb|EEF34739.1| ribonucleoprotein,
chloroplast, putative [Ricinus communis]
Length = 278
Score = 242 bits (618), Expect = 5e-62
Identities = 118/179 (65%), Positives = 143/179 (79%)
Frame = +2
Query: 59 TETRRKLYVTNFPWDMSAPQIEELFGQCGTVKGVEIIKQKNGSTRGYGFVTMASGEEAQA 238
T +RKLYV N PW +S I+ LFGQCGTV VEIIKQKNG +RG+ FVT+ASGEEAQA
Sbjct: 79 TTQKRKLYVFNLPWSLSVVDIKNLFGQCGTVTDVEIIKQKNGRSRGFAFVTLASGEEAQA 138
Query: 239 AVEKLDSYELQGRIIRVEFAKRFRKXXXXXXXGFVPRQPVHKIYVSNLAWKARSSNLKEL 418
A++KLDS+E+ GRIIRVEFAKR + G R+ HKIYVSNLAWK RS++L+E
Sbjct: 139 AIDKLDSHEVSGRIIRVEFAKRLKPPSPPSPTGTSARETRHKIYVSNLAWKVRSTHLREF 198
Query: 419 FSEKFNPLSARVVFENPTGRSAGYGFVGFATKEEAESAISELDGKELMGRPIRLRISQR 595
FS F+P+S+RVVF++PTGRS+GYGFV FAT+EEAE+AIS LDGKELMGRP+RL+ S R
Sbjct: 199 FSTNFSPVSSRVVFDSPTGRSSGYGFVSFATREEAEAAISALDGKELMGRPLRLKFSDR 257
>ref|XP_004164674.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 288
Score = 242 bits (617), Expect = 6e-62
Identities = 116/190 (61%), Positives = 150/190 (78%), Gaps = 2/190 (1%)
Frame = +2
Query: 35 LSTAAEGNTET--RRKLYVTNFPWDMSAPQIEELFGQCGTVKGVEIIKQKNGSTRGYGFV 208
L A+E N + +RKLY+ N PW +S I+ELFGQCGTV VEIIKQKNG +RG+ FV
Sbjct: 80 LEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQKNGRSRGFAFV 139
Query: 209 TMASGEEAQAAVEKLDSYELQGRIIRVEFAKRFRKXXXXXXXGFVPRQPVHKIYVSNLAW 388
TMAS +EAQAA++K DS E+ GR+I+VEFAKR +K G P + V+K+YVSNLAW
Sbjct: 140 TMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGETVNKLYVSNLAW 199
Query: 389 KARSSNLKELFSEKFNPLSARVVFENPTGRSAGYGFVGFATKEEAESAISELDGKELMGR 568
K RS+NL++ FSE FNP++ARVVF++P GRSAGYGFV FAT+EEA++A+S L+GKELMGR
Sbjct: 200 KVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSSLEGKELMGR 259
Query: 569 PIRLRISQRD 598
P+RL+ S+R+
Sbjct: 260 PLRLKFSERN 269
>ref|XP_004148763.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic-like [Cucumis
sativus]
Length = 282
Score = 242 bits (617), Expect = 6e-62
Identities = 116/190 (61%), Positives = 150/190 (78%), Gaps = 2/190 (1%)
Frame = +2
Query: 35 LSTAAEGNTET--RRKLYVTNFPWDMSAPQIEELFGQCGTVKGVEIIKQKNGSTRGYGFV 208
L A+E N + +RKLY+ N PW +S I+ELFGQCGTV VEIIKQKNG +RG+ FV
Sbjct: 74 LEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQKNGRSRGFAFV 133
Query: 209 TMASGEEAQAAVEKLDSYELQGRIIRVEFAKRFRKXXXXXXXGFVPRQPVHKIYVSNLAW 388
TMAS +EAQAA++K DS E+ GR+I+VEFAKR +K G P + V+K+YVSNLAW
Sbjct: 134 TMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGETVNKLYVSNLAW 193
Query: 389 KARSSNLKELFSEKFNPLSARVVFENPTGRSAGYGFVGFATKEEAESAISELDGKELMGR 568
K RS+NL++ FSE FNP++ARVVF++P GRSAGYGFV FAT+EEA++A+S L+GKELMGR
Sbjct: 194 KVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSSLEGKELMGR 253
Query: 569 PIRLRISQRD 598
P+RL+ S+R+
Sbjct: 254 PLRLKFSERN 263
>ref|XP_006352864.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Solanum
tuberosum]
Length = 284
Score = 231 bits (589), Expect = 1e-58
Identities = 110/178 (61%), Positives = 141/178 (79%), Gaps = 1/178 (0%)
Frame = +2
Query: 68 RRKLYVTNFPWDMSAPQIEELFGQCGTVKGVEIIKQKNGSTRGYGFVTMASGEEAQAAVE 247
RRKL+V N PW ++ P I+ +F +CG V VEIIK ++G +RG+ FVTM+SGEEAQAA++
Sbjct: 88 RRKLFVLNLPWSLTVPDIKNIFAECGIVDDVEIIKTEDGKSRGFAFVTMSSGEEAQAAID 147
Query: 248 KLDSYELQGRIIRVEFAKRFRKXXXXXXXGFVPR-QPVHKIYVSNLAWKARSSNLKELFS 424
KLDSYE+ GRIIRVEFAKRF+K P+ + HK+YVSNLAWK RS+ L+E FS
Sbjct: 148 KLDSYEVLGRIIRVEFAKRFKKPPGAPPPSTPPQGEARHKLYVSNLAWKVRSTQLREFFS 207
Query: 425 EKFNPLSARVVFENPTGRSAGYGFVGFATKEEAESAISELDGKELMGRPIRLRISQRD 598
+NP+SARV+F+N +GR+AGYGFV F TKE+AE+A+S LDGKELMGRPIRL+ S+RD
Sbjct: 208 ANYNPISARVIFDNASGRAAGYGFVSFDTKEQAEAAVSALDGKELMGRPIRLKFSERD 265
>emb|CBI33876.3| unnamed protein product [Vitis vinifera]
Length = 258
Score = 230 bits (586), Expect = 3e-58
Identities = 115/177 (64%), Positives = 135/177 (76%), Gaps = 3/177 (1%)
Frame = +2
Query: 68 RRKLYVTNFPWDMSAPQIEELFGQCGTVKGVEIIKQKNGSTRGYGFVTMASGEEAQAAVE 247
+RKL+V N PW +S I+ LFG+CGTV VEIIKQK+G +RGY FVTM SGEEAQA VE
Sbjct: 58 KRKLFVLNLPWSLSVVDIKNLFGECGTVTDVEIIKQKDGRSRGYAFVTMDSGEEAQAVVE 117
Query: 248 KLDSYELQGRIIRVEFAKRFRK---XXXXXXXGFVPRQPVHKIYVSNLAWKARSSNLKEL 418
K DSYEL GRIIRVEFAKRF+K G + HK+YVSNLAWK RS++L+E
Sbjct: 118 KFDSYELSGRIIRVEFAKRFKKPSPPPPPPPAGPPAGETRHKLYVSNLAWKVRSTHLREF 177
Query: 419 FSEKFNPLSARVVFENPTGRSAGYGFVGFATKEEAESAISELDGKELMGRPIRLRIS 589
FS FNP+S RVVF++P+GRS GYGF FATKEEAE+AIS LDGKELMGRP+ L+ S
Sbjct: 178 FSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEAAISALDGKELMGRPVHLKFS 234
Score = 61.2 bits (147), Expect = 2e-07
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Frame = +2
Query: 62 ETRRKLYVTNFPWDMSAPQIEELFGQCGTVKGVEII-KQKNGSTRGYGFVTMASGEEAQA 238
ETR KLYV+N W + + + E F V ++ +G + GYGF + A+ EEA+A
Sbjct: 155 ETRHKLYVSNLAWKVRSTHLREFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEA 214
Query: 239 AVEKLDSYELQGRIIRVEFA 298
A+ LD EL GR + ++F+
Sbjct: 215 AISALDGKELMGRPVHLKFS 234
>ref|XP_002279685.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic [Vitis
vinifera]
Length = 288
Score = 230 bits (586), Expect = 3e-58
Identities = 115/177 (64%), Positives = 135/177 (76%), Gaps = 3/177 (1%)
Frame = +2
Query: 68 RRKLYVTNFPWDMSAPQIEELFGQCGTVKGVEIIKQKNGSTRGYGFVTMASGEEAQAAVE 247
+RKL+V N PW +S I+ LFG+CGTV VEIIKQK+G +RGY FVTM SGEEAQA VE
Sbjct: 88 KRKLFVLNLPWSLSVVDIKNLFGECGTVTDVEIIKQKDGRSRGYAFVTMDSGEEAQAVVE 147
Query: 248 KLDSYELQGRIIRVEFAKRFRK---XXXXXXXGFVPRQPVHKIYVSNLAWKARSSNLKEL 418
K DSYEL GRIIRVEFAKRF+K G + HK+YVSNLAWK RS++L+E
Sbjct: 148 KFDSYELSGRIIRVEFAKRFKKPSPPPPPPPAGPPAGETRHKLYVSNLAWKVRSTHLREF 207
Query: 419 FSEKFNPLSARVVFENPTGRSAGYGFVGFATKEEAESAISELDGKELMGRPIRLRIS 589
FS FNP+S RVVF++P+GRS GYGF FATKEEAE+AIS LDGKELMGRP+ L+ S
Sbjct: 208 FSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEAAISALDGKELMGRPVHLKFS 264
Score = 61.2 bits (147), Expect = 2e-07
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Frame = +2
Query: 62 ETRRKLYVTNFPWDMSAPQIEELFGQCGTVKGVEII-KQKNGSTRGYGFVTMASGEEAQA 238
ETR KLYV+N W + + + E F V ++ +G + GYGF + A+ EEA+A
Sbjct: 185 ETRHKLYVSNLAWKVRSTHLREFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEA 244
Query: 239 AVEKLDSYELQGRIIRVEFA 298
A+ LD EL GR + ++F+
Sbjct: 245 AISALDGKELMGRPVHLKFS 264
>ref|XP_004245902.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Solanum
lycopersicum]
Length = 285
Score = 227 bits (579), Expect = 2e-57
Identities = 111/178 (62%), Positives = 139/178 (78%), Gaps = 1/178 (0%)
Frame = +2
Query: 68 RRKLYVTNFPWDMSAPQIEELFGQCGTVKGVEIIKQKNGSTRGYGFVTMASGEEAQAAVE 247
RRKL+V N PW ++ I+ +F +CG V VEIIK K+G +RG+ FVTM+SGEEAQAA++
Sbjct: 89 RRKLFVLNLPWSLTVADIKNIFAECGIVDDVEIIKTKDGKSRGFAFVTMSSGEEAQAAID 148
Query: 248 KLDSYELQGRIIRVEFAKRFRKXXXXXXXGFVPR-QPVHKIYVSNLAWKARSSNLKELFS 424
KLDSYE+ GRIIRVEFAKRF+K P+ + HK+YVSNLAWK RS+ L+E FS
Sbjct: 149 KLDSYEVSGRIIRVEFAKRFKKPPGAPPPSTPPQGEARHKLYVSNLAWKVRSTQLREFFS 208
Query: 425 EKFNPLSARVVFENPTGRSAGYGFVGFATKEEAESAISELDGKELMGRPIRLRISQRD 598
NP+SARVVF+N +GR+AGYGFV F TKE+AE+A+S LDGKELMGRPIRL+ S+RD
Sbjct: 209 ANNNPISARVVFDNASGRAAGYGFVTFDTKEQAEAALSALDGKELMGRPIRLKFSERD 266
>ref|NP_001053710.1| Os04g0591000 [Oryza sativa Japonica Group]
gi|38346724|emb|CAE04874.2| OSJNBa0086O06.22 [Oryza
sativa Japonica Group] gi|113565281|dbj|BAF15624.1|
Os04g0591000 [Oryza sativa Japonica Group]
gi|215706340|dbj|BAG93196.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 291
Score = 227 bits (578), Expect = 2e-57
Identities = 114/181 (62%), Positives = 139/181 (76%)
Frame = +2
Query: 50 EGNTETRRKLYVTNFPWDMSAPQIEELFGQCGTVKGVEIIKQKNGSTRGYGFVTMASGEE 229
E E RRKLYV N PW AP+IE+LF QCG VK VE+IK K+G +G+ FVTMA+ EE
Sbjct: 73 EEGGEKRRKLYVANIPWSFPAPEIEKLFAQCGAVKDVEVIKGKDGKKKGFAFVTMATAEE 132
Query: 230 AQAAVEKLDSYELQGRIIRVEFAKRFRKXXXXXXXGFVPRQPVHKIYVSNLAWKARSSNL 409
A AAVEKL+S ++ GR IRVEF+K FRK G + + HK+YVSNL WKAR+ N+
Sbjct: 133 AAAAVEKLNSLDVMGRTIRVEFSKSFRKPAPPPPPGTILER--HKLYVSNLPWKARAPNM 190
Query: 410 KELFSEKFNPLSARVVFENPTGRSAGYGFVGFATKEEAESAISELDGKELMGRPIRLRIS 589
KE FS KFNPLSA+VVF++P+G+SAGYGFV F TKEEAE+A++ELDGKELMGRP+RLR
Sbjct: 191 KEFFS-KFNPLSAKVVFDSPSGKSAGYGFVSFGTKEEAEAALTELDGKELMGRPVRLRWR 249
Query: 590 Q 592
Q
Sbjct: 250 Q 250
>emb|CAH67960.1| OSIGBa0142I02-OSIGBa0101B20.3 [Oryza sativa Indica Group]
Length = 291
Score = 227 bits (578), Expect = 2e-57
Identities = 114/181 (62%), Positives = 139/181 (76%)
Frame = +2
Query: 50 EGNTETRRKLYVTNFPWDMSAPQIEELFGQCGTVKGVEIIKQKNGSTRGYGFVTMASGEE 229
E E RRKLYV N PW AP+IE+LF QCG VK VE+IK K+G +G+ FVTMA+ EE
Sbjct: 73 EEGGEKRRKLYVANIPWSFPAPEIEKLFAQCGAVKDVEVIKGKDGKKKGFAFVTMATAEE 132
Query: 230 AQAAVEKLDSYELQGRIIRVEFAKRFRKXXXXXXXGFVPRQPVHKIYVSNLAWKARSSNL 409
A AAVEKL+S ++ GR IRVEF+K FRK G + + HK+YVSNL WKAR+ N+
Sbjct: 133 AAAAVEKLNSLDVMGRTIRVEFSKSFRKPAPPPPPGTILER--HKLYVSNLPWKARAPNM 190
Query: 410 KELFSEKFNPLSARVVFENPTGRSAGYGFVGFATKEEAESAISELDGKELMGRPIRLRIS 589
KE FS KFNPLSA+VVF++P+G+SAGYGFV F TKEEAE+A++ELDGKELMGRP+RLR
Sbjct: 191 KEFFS-KFNPLSAKVVFDSPSGKSAGYGFVSFGTKEEAEAALTELDGKELMGRPVRLRWR 249
Query: 590 Q 592
Q
Sbjct: 250 Q 250
>ref|XP_006652723.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Oryza
brachyantha]
Length = 292
Score = 226 bits (576), Expect = 4e-57
Identities = 115/183 (62%), Positives = 142/183 (77%)
Frame = +2
Query: 44 AAEGNTETRRKLYVTNFPWDMSAPQIEELFGQCGTVKGVEIIKQKNGSTRGYGFVTMASG 223
A EG E RRKLYV N PW + AP+IE+LF QCG VK VE+IK K+G +G+ FVTM++
Sbjct: 75 AEEG--EKRRKLYVANIPWSLPAPEIEKLFAQCGAVKDVEVIKGKDGKKKGFAFVTMSTT 132
Query: 224 EEAQAAVEKLDSYELQGRIIRVEFAKRFRKXXXXXXXGFVPRQPVHKIYVSNLAWKARSS 403
EEA AAVEKL+S ++ GR IRVEF+K FRK G + + HK+YVSNL WKAR+
Sbjct: 133 EEAAAAVEKLNSLDVMGRTIRVEFSKSFRKPAPPPPPGTIVER--HKLYVSNLPWKARAP 190
Query: 404 NLKELFSEKFNPLSARVVFENPTGRSAGYGFVGFATKEEAESAISELDGKELMGRPIRLR 583
N+KE F+ KFNPLSA+VVF++P+G+SAGYGFV F TKEEAE+A+SELDGKELMGRP+RLR
Sbjct: 191 NMKEFFT-KFNPLSAKVVFDSPSGKSAGYGFVSFGTKEEAEAALSELDGKELMGRPVRLR 249
Query: 584 ISQ 592
Q
Sbjct: 250 WRQ 252
>gb|EOY23975.1| RNA-binding family protein isoform 1 [Theobroma cacao]
Length = 281
Score = 225 bits (574), Expect = 6e-57
Identities = 111/180 (61%), Positives = 141/180 (78%)
Frame = +2
Query: 59 TETRRKLYVTNFPWDMSAPQIEELFGQCGTVKGVEIIKQKNGSTRGYGFVTMASGEEAQA 238
+ +RKL+V N PW + I++LFGQCG V VEIIKQK+G +R + FVTMASGEEAQA
Sbjct: 84 SNVKRKLFVLNLPWSYTVADIKDLFGQCGNVTDVEIIKQKDGRSRNFAFVTMASGEEAQA 143
Query: 239 AVEKLDSYELQGRIIRVEFAKRFRKXXXXXXXGFVPRQPVHKIYVSNLAWKARSSNLKEL 418
AV+KLDS+E+ RIIRVEFA+RF+K PR+ HK+YVSNLAWK RSS+L+E
Sbjct: 144 AVDKLDSHEVSARIIRVEFARRFKKPSPSPQPIVPPRETHHKLYVSNLAWKVRSSHLREF 203
Query: 419 FSEKFNPLSARVVFENPTGRSAGYGFVGFATKEEAESAISELDGKELMGRPIRLRISQRD 598
FS FNP++ARV+F P+G+SAGYGFV FATKEEA++AIS L+GKELM RP+RL+ S+R+
Sbjct: 204 FS-AFNPVAARVIFGTPSGQSAGYGFVSFATKEEADAAISTLNGKELMDRPLRLKFSERN 262
>gb|EAY95360.1| hypothetical protein OsI_17193 [Oryza sativa Indica Group]
Length = 290
Score = 224 bits (570), Expect = 2e-56
Identities = 113/181 (62%), Positives = 137/181 (75%)
Frame = +2
Query: 50 EGNTETRRKLYVTNFPWDMSAPQIEELFGQCGTVKGVEIIKQKNGSTRGYGFVTMASGEE 229
E E RRKLYV N PW AP+IE+LF QCG VK VE+IK K+G +G+ FVTMA+ EE
Sbjct: 73 EEGGEKRRKLYVANIPWSFPAPEIEKLFAQCGAVKDVEVIKGKDGKKKGFAFVTMATAEE 132
Query: 230 AQAAVEKLDSYELQGRIIRVEFAKRFRKXXXXXXXGFVPRQPVHKIYVSNLAWKARSSNL 409
A AAVEKL+S ++ GR IRVEF+K FRK + R HK+YVSNL WKAR+ N+
Sbjct: 133 AAAAVEKLNSLDVMGRTIRVEFSKSFRKPAPPPPGTILER---HKLYVSNLPWKARAPNM 189
Query: 410 KELFSEKFNPLSARVVFENPTGRSAGYGFVGFATKEEAESAISELDGKELMGRPIRLRIS 589
KE F KFNPLSA+VVF++P+G+SAGYGFV F TKEEAE+A++ELDGKELMGRP+RLR
Sbjct: 190 KE-FCSKFNPLSAKVVFDSPSGKSAGYGFVSFGTKEEAEAALTELDGKELMGRPVRLRWR 248
Query: 590 Q 592
Q
Sbjct: 249 Q 249
>gb|EXB32996.1| 31 kDa ribonucleoprotein [Morus notabilis]
Length = 295
Score = 223 bits (568), Expect = 3e-56
Identities = 105/186 (56%), Positives = 137/186 (73%)
Frame = +2
Query: 41 TAAEGNTETRRKLYVTNFPWDMSAPQIEELFGQCGTVKGVEIIKQKNGSTRGYGFVTMAS 220
T E +RKLYV N PW ++ I+ LFGQCGTV VEIIKQK+G RG+ FVTMA
Sbjct: 84 THLEKENNQKRKLYVVNLPWSLTVVDIKSLFGQCGTVTDVEIIKQKDGRNRGFAFVTMAC 143
Query: 221 GEEAQAAVEKLDSYELQGRIIRVEFAKRFRKXXXXXXXGFVPRQPVHKIYVSNLAWKARS 400
GEEAQA +++ + ++ GRII++E AK+F+K G P + HK+YVSN+ WK RS
Sbjct: 144 GEEAQAVIDRFNLQDVSGRIIKIELAKQFKKPSPPRPPGPQPGETTHKLYVSNIEWKVRS 203
Query: 401 SNLKELFSEKFNPLSARVVFENPTGRSAGYGFVGFATKEEAESAISELDGKELMGRPIRL 580
++L++ SE F P+SARVVF+ P GRSAGYGFV FAT+EEAE+AIS LDGKELMGRP+RL
Sbjct: 204 THLRDFVSENFKPVSARVVFDGPKGRSAGYGFVSFATREEAEAAISSLDGKELMGRPLRL 263
Query: 581 RISQRD 598
+ S+++
Sbjct: 264 KFSEKN 269
>ref|NP_181084.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana] gi|3608147|gb|AAC36180.1| putative chloroplast
RNA binding protein precursor [Arabidopsis thaliana]
gi|14596023|gb|AAK68739.1| putative chloroplast RNA
binding protein precursor [Arabidopsis thaliana]
gi|23198314|gb|AAN15684.1| putative chloroplast RNA
binding protein precursor [Arabidopsis thaliana]
gi|330254012|gb|AEC09106.1| RNA-binding (RRM/RBD/RNP
motifs) family protein [Arabidopsis thaliana]
Length = 308
Score = 223 bits (567), Expect = 4e-56
Identities = 111/184 (60%), Positives = 140/184 (76%), Gaps = 4/184 (2%)
Frame = +2
Query: 56 NTETRRKLYVTNFPWDMSAPQIEELFGQCGTVKGVEIIKQKNGSTRGYGFVTMASGEEAQ 235
N+ +RKL+V N PW MS I ELFGQCGTV VEII+QK+G RG+ FVTMASGEEAQ
Sbjct: 90 NSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQ 149
Query: 236 AAVEKLDSYELQGRIIRVEFAKRFRKXXXXXXXGF---VPRQPVHKIYVSNLAWKARSSN 406
AA++K D++++ GRII V FA+RF+K P HK+YVSNLAWKARS++
Sbjct: 150 AAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTH 209
Query: 407 LKELF-SEKFNPLSARVVFENPTGRSAGYGFVGFATKEEAESAISELDGKELMGRPIRLR 583
L+ELF + FNP+SARVVF +P GRS+GYGFV FAT+EEAE+AI++L+GKE+MGRPI L+
Sbjct: 210 LRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLK 269
Query: 584 ISQR 595
S R
Sbjct: 270 FSLR 273
>ref|XP_006428430.1| hypothetical protein CICLE_v10012439mg [Citrus clementina]
gi|567871683|ref|XP_006428431.1| hypothetical protein
CICLE_v10012439mg [Citrus clementina]
gi|567871685|ref|XP_006428432.1| hypothetical protein
CICLE_v10012439mg [Citrus clementina]
gi|568877400|ref|XP_006491727.1| PREDICTED:
ribonucleoprotein At2g37220, chloroplastic-like isoform
X1 [Citrus sinensis] gi|568877402|ref|XP_006491728.1|
PREDICTED: ribonucleoprotein At2g37220,
chloroplastic-like isoform X2 [Citrus sinensis]
gi|568877404|ref|XP_006491729.1| PREDICTED:
ribonucleoprotein At2g37220, chloroplastic-like isoform
X3 [Citrus sinensis] gi|557530487|gb|ESR41670.1|
hypothetical protein CICLE_v10012439mg [Citrus
clementina] gi|557530488|gb|ESR41671.1| hypothetical
protein CICLE_v10012439mg [Citrus clementina]
gi|557530489|gb|ESR41672.1| hypothetical protein
CICLE_v10012439mg [Citrus clementina]
Length = 275
Score = 221 bits (562), Expect = 2e-55
Identities = 108/177 (61%), Positives = 132/177 (74%)
Frame = +2
Query: 68 RRKLYVTNFPWDMSAPQIEELFGQCGTVKGVEIIKQKNGSTRGYGFVTMASGEEAQAAVE 247
RRK+YV N PW S +I+ LF CGTV VEIIK K G R + FVTMAS EEAQAAV
Sbjct: 78 RRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVN 137
Query: 248 KLDSYELQGRIIRVEFAKRFRKXXXXXXXGFVPRQPVHKIYVSNLAWKARSSNLKELFSE 427
+ D+ E+ GRIIRVEFAK+F+K R+ HK+YVSNL+WK RS++L+E FS
Sbjct: 138 QFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSA 197
Query: 428 KFNPLSARVVFENPTGRSAGYGFVGFATKEEAESAISELDGKELMGRPIRLRISQRD 598
FNP+S++VVFE+ GRSAGYGFV FATKEEAE+AIS LDGKELMGRP+RL+ Q++
Sbjct: 198 NFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 254
>ref|XP_006294626.1| hypothetical protein CARUB_v10023663mg [Capsella rubella]
gi|482563334|gb|EOA27524.1| hypothetical protein
CARUB_v10023663mg [Capsella rubella]
Length = 318
Score = 220 bits (560), Expect = 3e-55
Identities = 115/193 (59%), Positives = 142/193 (73%), Gaps = 10/193 (5%)
Frame = +2
Query: 41 TAAEGNTET------RRKLYVTNFPWDMSAPQIEELFGQCGTVKGVEIIKQKNGSTRGYG 202
T+ E TE +RKL+V N PW MS I +LF QCGTV VEII+QK+G RG+
Sbjct: 78 TSQEDKTEETQKSNLKRKLFVFNLPWSMSVHDISDLFRQCGTVNNVEIIRQKDGKNRGFA 137
Query: 203 FVTMASGEEAQAAVEKLDSYELQGRIIRVEFAKRFRKXXXXXXXGF---VPRQPVHKIYV 373
FVTMASGEEAQAAV+K D++E+ GRIIRV FA+RF+K P HK+YV
Sbjct: 138 FVTMASGEEAQAAVDKFDAFEVSGRIIRVNFARRFKKPTPKPPNALPSPPPGDTRHKLYV 197
Query: 374 SNLAWKARSSNLKELF-SEKFNPLSARVVFENPTGRSAGYGFVGFATKEEAESAISELDG 550
SNLAWKARS++L+ELF + FNP+SARVVF +P GRS+GYGFV FAT+EEAE+AI++LDG
Sbjct: 198 SNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLDG 257
Query: 551 KELMGRPIRLRIS 589
KE+MGRPI L+ S
Sbjct: 258 KEIMGRPIILKFS 270
>ref|NP_001242808.1| uncharacterized protein LOC100793319 [Glycine max]
gi|255639879|gb|ACU20232.1| unknown [Glycine max]
Length = 289
Score = 220 bits (560), Expect = 3e-55
Identities = 113/181 (62%), Positives = 139/181 (76%), Gaps = 2/181 (1%)
Frame = +2
Query: 59 TETRRKLYVTNFPWDMSAPQIEELFGQCGTVKGVEIIKQKNGSTRGYGFVTMASGEEAQA 238
T+ +KLYV N W ++A I +LF Q GTV VEIIK K+G ++GY FVTMASGEEAQA
Sbjct: 76 TDNVKKLYVVNLSWSLTAADINDLFAQSGTVTDVEIIKSKDGRSKGYAFVTMASGEEAQA 135
Query: 239 AVEKLDSYELQGRIIRVEFAKRFRK-XXXXXXXGFVPRQPVHKIYVSNLAWKARSSNLKE 415
AV+K DSYEL GRIIRVE AKRF+K G P + H IY SNLAWKARS++L++
Sbjct: 136 AVDKFDSYELSGRIIRVELAKRFKKPPSPPPPPGPRPGETRHVIYASNLAWKARSTHLRQ 195
Query: 416 LFSEKF-NPLSARVVFENPTGRSAGYGFVGFATKEEAESAISELDGKELMGRPIRLRISQ 592
LF+E F P SARVVF++P+GRSAGYGFV F TKE+AE+AIS +DGKELMGRP+RL+ S+
Sbjct: 196 LFAENFKTPSSARVVFDSPSGRSAGYGFVSFLTKEDAEAAISTVDGKELMGRPLRLKFSE 255
Query: 593 R 595
+
Sbjct: 256 K 256
Score = 63.5 bits (153), Expect = 4e-08
Identities = 30/84 (35%), Positives = 52/84 (61%)
Frame = +2
Query: 344 PRQPVHKIYVSNLAWKARSSNLKELFSEKFNPLSARVVFENPTGRSAGYGFVGFATKEEA 523
P V K+YV NL+W ++++ +LF++ ++ ++ GRS GY FV A+ EEA
Sbjct: 75 PTDNVKKLYVVNLSWSLTAADINDLFAQSGTVTDVEII-KSKDGRSKGYAFVTMASGEEA 133
Query: 524 ESAISELDGKELMGRPIRLRISQR 595
++A+ + D EL GR IR+ +++R
Sbjct: 134 QAAVDKFDSYELSGRIIRVELAKR 157
>ref|XP_004976651.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like isoform X2
[Setaria italica]
Length = 277
Score = 219 bits (559), Expect = 3e-55
Identities = 112/181 (61%), Positives = 139/181 (76%)
Frame = +2
Query: 38 STAAEGNTETRRKLYVTNFPWDMSAPQIEELFGQCGTVKGVEIIKQKNGSTRGYGFVTMA 217
+ A E E RRKLYV N PW + AP++E+LF QCGTVK VE+IK K+G RG+ FVTM+
Sbjct: 60 AAAEELQGEKRRKLYVANLPWSVPAPEVEKLFAQCGTVKDVELIKGKDGRNRGFAFVTMS 119
Query: 218 SGEEAQAAVEKLDSYELQGRIIRVEFAKRFRKXXXXXXXGFVPRQPVHKIYVSNLAWKAR 397
+ EEA AAVEKL+S+E+ GR I+VEF+K FRK G + + HK+YVSNL WKAR
Sbjct: 120 TAEEAAAAVEKLNSHEVMGRKIKVEFSKSFRKPAPTPPPGTIIER--HKLYVSNLPWKAR 177
Query: 398 SSNLKELFSEKFNPLSARVVFENPTGRSAGYGFVGFATKEEAESAISELDGKELMGRPIR 577
+ N+KE FS KFNPLSA V+F+N G++AGYGFV F TKEEAE+A+SELDGKELMGRP+R
Sbjct: 178 APNVKEFFS-KFNPLSANVIFDN--GKAAGYGFVSFGTKEEAEAALSELDGKELMGRPVR 234
Query: 578 L 580
L
Sbjct: 235 L 235
Score = 66.6 bits (161), Expect = 5e-09
Identities = 34/85 (40%), Positives = 47/85 (55%)
Frame = +2
Query: 41 TAAEGNTETRRKLYVTNFPWDMSAPQIEELFGQCGTVKGVEIIKQKNGSTRGYGFVTMAS 220
T G R KLYV+N PW AP ++E F + + I NG GYGFV+ +
Sbjct: 155 TPPPGTIIERHKLYVSNLPWKARAPNVKEFFSKFNPLSANVIFD--NGKAAGYGFVSFGT 212
Query: 221 GEEAQAAVEKLDSYELQGRIIRVEF 295
EEA+AA+ +LD EL GR +R+ +
Sbjct: 213 KEEAEAALSELDGKELMGRPVRLNW 237
>ref|XP_003534278.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 282
Score = 219 bits (558), Expect = 4e-55
Identities = 111/182 (60%), Positives = 140/182 (76%), Gaps = 2/182 (1%)
Frame = +2
Query: 59 TETRRKLYVTNFPWDMSAPQIEELFGQCGTVKGVEIIKQKNGSTRGYGFVTMASGEEAQA 238
T+ +KLYV N W ++A I +LF QCGTV VEIIK K+G ++GY FVTMASGEEAQA
Sbjct: 69 TDNVKKLYVVNLSWSLTAADITDLFAQCGTVTDVEIIKSKDGRSKGYAFVTMASGEEAQA 128
Query: 239 AVEKLDSYELQGRIIRVEFAKRFRK-XXXXXXXGFVPRQPVHKIYVSNLAWKARSSNLKE 415
AV+K DSYEL GRIIRVE AKR +K G P + H IY SNLAWKARS++L++
Sbjct: 129 AVDKFDSYELSGRIIRVELAKRLKKPPSLPPPPGPRPGETRHVIYASNLAWKARSTHLRQ 188
Query: 416 LFSEKF-NPLSARVVFENPTGRSAGYGFVGFATKEEAESAISELDGKELMGRPIRLRISQ 592
+F+E F P SARVVF++P+GRSAGYGFV F T+E+AE+AIS +DGKELMGRP+RL+ S+
Sbjct: 189 VFTENFKTPSSARVVFDSPSGRSAGYGFVSFLTREDAEAAISTVDGKELMGRPLRLKFSE 248
Query: 593 RD 598
++
Sbjct: 249 KN 250
Score = 62.0 bits (149), Expect = 1e-07
Identities = 30/84 (35%), Positives = 52/84 (61%)
Frame = +2
Query: 344 PRQPVHKIYVSNLAWKARSSNLKELFSEKFNPLSARVVFENPTGRSAGYGFVGFATKEEA 523
P V K+YV NL+W ++++ +LF++ ++ ++ GRS GY FV A+ EEA
Sbjct: 68 PTDNVKKLYVVNLSWSLTAADITDLFAQCGTVTDVEII-KSKDGRSKGYAFVTMASGEEA 126
Query: 524 ESAISELDGKELMGRPIRLRISQR 595
++A+ + D EL GR IR+ +++R
Sbjct: 127 QAAVDKFDSYELSGRIIRVELAKR 150
>ref|XP_002879549.1| hypothetical protein ARALYDRAFT_482506 [Arabidopsis lyrata subsp.
lyrata] gi|297325388|gb|EFH55808.1| hypothetical protein
ARALYDRAFT_482506 [Arabidopsis lyrata subsp. lyrata]
Length = 308
Score = 219 bits (557), Expect = 6e-55
Identities = 111/180 (61%), Positives = 136/180 (75%), Gaps = 4/180 (2%)
Frame = +2
Query: 68 RRKLYVTNFPWDMSAPQIEELFGQCGTVKGVEIIKQKNGSTRGYGFVTMASGEEAQAAVE 247
+RKL+V N PW MS I ELFGQCGTV VEII+QK+G RG+ FVTMASGEEAQAA++
Sbjct: 94 KRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAID 153
Query: 248 KLDSYELQGRIIRVEFAKRFRKXXXXXXXGF---VPRQPVHKIYVSNLAWKARSSNLKEL 418
K D+ ++ GRII V FA+RF+K P HK+YVSNLAWKARS++L+EL
Sbjct: 154 KFDTSQVSGRIISVNFARRFKKPTPKPPNDLPSPPPGDTRHKLYVSNLAWKARSTHLREL 213
Query: 419 F-SEKFNPLSARVVFENPTGRSAGYGFVGFATKEEAESAISELDGKELMGRPIRLRISQR 595
F + FNP+SARVVF +P GRS+GYGFV FAT+EEAE AI++LDGKE+MGRPI L+ S R
Sbjct: 214 FTASDFNPVSARVVFADPEGRSSGYGFVSFATREEAEDAIAKLDGKEIMGRPIILKFSLR 273
Score = 60.8 bits (146), Expect = 3e-07
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Frame = +2
Query: 62 ETRRKLYVTNFPWDMSAPQIEELF--GQCGTVKGVEIIKQKNGSTRGYGFVTMASGEEAQ 235
+TR KLYV+N W + + ELF V + G + GYGFV+ A+ EEA+
Sbjct: 191 DTRHKLYVSNLAWKARSTHLRELFTASDFNPVSARVVFADPEGRSSGYGFVSFATREEAE 250
Query: 236 AAVEKLDSYELQGRIIRVEFAKR 304
A+ KLD E+ GR I ++F+ R
Sbjct: 251 DAIAKLDGKEIMGRPIILKFSLR 273