BLASTX nr result
ID: Zingiber23_contig00011044
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00011044
(2728 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu... 1140 0.0
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici... 1122 0.0
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 1109 0.0
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu... 1107 0.0
ref|XP_004968861.1| PREDICTED: probable RNA-dependent RNA polyme... 1103 0.0
ref|XP_006645957.1| PREDICTED: probable RNA-dependent RNA polyme... 1097 0.0
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis] 1094 0.0
ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [S... 1093 0.0
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 1090 0.0
sp|Q8LHH9.1|SHL2_ORYSJ RecName: Full=Probable RNA-dependent RNA ... 1087 0.0
gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus pe... 1083 0.0
ref|XP_003561343.1| PREDICTED: probable RNA-dependent RNA polyme... 1082 0.0
emb|CBI21038.3| unnamed protein product [Vitis vinifera] 1081 0.0
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V... 1081 0.0
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa] 1077 0.0
ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 1073 0.0
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 1073 0.0
ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis... 1073 0.0
gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao] 1071 0.0
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 1070 0.0
>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
protein [Populus trichocarpa]
Length = 1200
Score = 1140 bits (2948), Expect = 0.0
Identities = 567/832 (68%), Positives = 669/832 (80%), Gaps = 4/832 (0%)
Frame = +2
Query: 5 SALLDIWSYKRSIFDAPRRLKVVQDCLLKDRKLLRQPSN--ETVEVRRLAITPTKAYCLP 178
SAL I +Y+R +F+A RRLK VQ+ LLK+ L + P + VE+RRL ITPTKAYCLP
Sbjct: 371 SALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLVITPTKAYCLP 430
Query: 179 AEVELSNRVLRKYKEVADRFLRVTFMDEGMXXXXXXXXXXXXAPIVRDITFSSFPQKTTA 358
EVELSNRVLRKYK+VADRFLRVTFMDEG+ APIVRDIT +SFPQKT
Sbjct: 431 PEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDITSNSFPQKTRI 490
Query: 359 FRRVNQILTNGFQLCGRKYSFLAFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRN 538
F+RV ILT GF LCGR+YSFLAFS+NQLRD+SAWFF+E N I+V ++++WMGKF+NRN
Sbjct: 491 FKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERN-ISVLDVKSWMGKFTNRN 549
Query: 539 VAKCTARMGQCFSSTYATINVPPNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQ 718
+AKC ARMGQCFSSTYATI VPP EVN DL DI RN YVFSDGIG ITPDLA EVAEKL+
Sbjct: 550 IAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDLAREVAEKLK 609
Query: 719 LTDNPPSAYQIRYAGCKGVVAVWLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGF 898
L +PP AYQIRYAGCKGVVA W G GDG+RLSLRPSMNKF+SNHT LE+ SWT+ QPGF
Sbjct: 610 LDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEICSWTRFQPGF 669
Query: 899 LNRQIITLLSSQQVPDSVFERMQETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLS 1078
LNRQIITLLS+ VPD+VF +MQETM+ KLNQM V++DVA++VLT SC +Q + AA+MLS
Sbjct: 670 LNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQGNVAAIMLS 729
Query: 1079 AGFRPQTEPHLKAMISCVRSSQLGDLLAKTRIFVSKARWLMGCLDELGILEQGQCFIQTS 1258
AGF+P EPHL+ M++CVR++QL DL KTRIFV RWLMGCLDELG+LEQGQCFIQ S
Sbjct: 730 AGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLEQGQCFIQVS 789
Query: 1259 SLSLENCFSKHGSRFSAPQKNRQVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCL 1438
+ SLE CF KHG++FS +KN QVI GTV +AKNPCLHPGD+R+LEAVDVP LHHL DCL
Sbjct: 790 NSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVPGLHHLYDCL 849
Query: 1439 VFPQKGDRPHTNEASGSDLDGDLYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQ 1618
VFPQKG+RPHTNEASGSDLDGDLYFVTWD++LIPPSK+S I M Y AE + L R + Q
Sbjct: 850 VFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKLLARPVNHQ 909
Query: 1619 DIIDFYLKNMINENLGVICNAHVVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTL 1798
DII+F+ KNM+N+NLG ICNAHVVHAD SEYGA D+NCL LAELAA AVDFPKTGK+V++
Sbjct: 910 DIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVDFPKTGKVVSM 969
Query: 1799 PPTLKPKCYPDFMGKDGYISYKSEKVLGKLYRKIKDVTDD--IDSSETACMVEDLPYDVD 1972
PP LKPK YPDFMGK+ Y SYKSEK+LG+LYR+IKD D+ SSE + D+PYD D
Sbjct: 970 PPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNLVPGDIPYDSD 1029
Query: 1973 LEVVGSSDYLADAMQNKDVYERRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKE 2152
LEVVG+SDY++DA K Y+ +LN LL+QY+V E EVVTGHIWS+PK++SRKQGELK+
Sbjct: 1030 LEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKYSSRKQGELKD 1089
Query: 2153 RLKNAYSSLHKEHRHAFDTMAPDFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELN 2332
RLK++Y+SL KE R F+ M +F QL D EK LYE+KASAWYQV YHP VKKSLEL
Sbjct: 1090 RLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHPHWVKKSLELQ 1149
Query: 2333 EPDLDLVPARLSFAWIAADYLVRIKIRCGDERRKLNSQRPIDSLASYLSERI 2488
+PD LSFAWIAADYL RIKIR E ++S +P++SLA YL++R+
Sbjct: 1150 DPDGAGTSVMLSFAWIAADYLARIKIR-HRETGNVDSAKPVNSLAKYLADRM 1200
>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
putative [Ricinus communis]
Length = 1203
Score = 1122 bits (2901), Expect = 0.0
Identities = 566/838 (67%), Positives = 653/838 (77%), Gaps = 10/838 (1%)
Frame = +2
Query: 5 SALLDIWSYKRSIFDAPRRLKVVQDCLLKDRKLLRQPS--NETVEVRRLAITPTKAYCLP 178
+AL I SYK +FDA +RLK VQ LLK+ KL R ++ VE+RRLAITPT+AYCLP
Sbjct: 368 AALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITPTRAYCLP 427
Query: 179 AEVELSNRVLRKYKEVADRFLRVTFMDEGMXXXXXXXXXXXXAPIVRDITFSSFPQKTTA 358
EVELSNRVLR+YK++AD+FLRVTFMDEG+ APIVRDIT +SF QKT
Sbjct: 428 PEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNSFSQKTRI 487
Query: 359 FRRVNQILTNGFQLCGRKYSFLAFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRN 538
F+RV ILT+GF LCGRKYSFLAFSSNQLRDRSAWFFAE T +VS IRNWMGKF+NRN
Sbjct: 488 FKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKT-SVSKIRNWMGKFTNRN 546
Query: 539 VAKCTARMGQCFSSTYATINVPPNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQ 718
+AKC ARMGQCFSSTYAT+ VP E DL DI RN Y+FSDGIG ITPDLA EVAEKL+
Sbjct: 547 IAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDLAKEVAEKLK 606
Query: 719 LTDNPPSAYQIRYAGCKGVVAVWLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGF 898
L NPP AYQIRYAGCKGVVA W + DGIRLSLR SMNKF SNHT LE+ SWT+ QPGF
Sbjct: 607 LEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWTRFQPGF 666
Query: 899 LNRQIITLLSSQQVPDSVFERMQETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLS 1078
LNRQIITLLS+ VPD +F +MQ M+ KLNQM +DADVA++V+T SC EQ +TAA+MLS
Sbjct: 667 LNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQGNTAAIMLS 726
Query: 1079 AGFRPQTEPHLKAMISCVRSSQLGDLLAKTRIFVSKARWLMGCLDELGILEQGQCFIQTS 1258
AGF P+TEPHL M++C+R++QL L KTRIFV RWLMGCLDELG+LE GQCFIQ S
Sbjct: 727 AGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQCFIQVS 786
Query: 1259 SLSLENCFSKHGSRFSAPQKNRQVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCL 1438
+ SLE+CF KHGSRFS +K QV+ GTV +AKNPCLHPGDIRILEAVD P LHHL DCL
Sbjct: 787 NPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPELHHLHDCL 846
Query: 1439 VFPQKGDRPHTNEASGSDLDGDLYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQ 1618
VFPQKGDRPHTNEASGSDLDGDLYFVTWD++LIPPSK+S + M Y AE + L R + Q
Sbjct: 847 VFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQLNRPVNHQ 906
Query: 1619 DIIDFYLKNMINENLGVICNAHVVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTL 1798
DIIDF+ KNM+NENLG ICNAHVVHAD SEYGA DENC+KLAELAA AVDFPKTGK+VT+
Sbjct: 907 DIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDFPKTGKLVTM 966
Query: 1799 PPTLKPKCYPDFMGKDGYISYKSEKVLGKLYRKIKDVTDDID--------SSETACMVED 1954
PP LKPK YPDFMGK+ Y SY S K+LG+LYR++KD +D D SSE + D
Sbjct: 967 PPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAATSSELNLVRGD 1026
Query: 1955 LPYDVDLEVVGSSDYLADAMQNKDVYERRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRK 2134
+PYD DLEV GSSDY+ DA K Y+ +L LLAQY+V E EVVTGHIWS+PK NSRK
Sbjct: 1027 IPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIWSMPKCNSRK 1086
Query: 2135 QGELKERLKNAYSSLHKEHRHAFDTMAPDFLQLTDAEKGVLYERKASAWYQVTYHPQLVK 2314
QGELKERLK +Y SL KE R F+ M DF QLT+ EK +LYE+KASAWYQV YHP+ V
Sbjct: 1087 QGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQVAYHPKWVN 1146
Query: 2315 KSLELNEPDLDLVPARLSFAWIAADYLVRIKIRCGDERRKLNSQRPIDSLASYLSERI 2488
KS+EL EPD + LSFAWIAADYL RIKIRC +++ +P++SL YL++RI
Sbjct: 1147 KSMELQEPDAAGCASMLSFAWIAADYLARIKIRCRG-FDGVDTSKPVNSLVKYLADRI 1203
>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp.
vesca]
Length = 1197
Score = 1109 bits (2869), Expect = 0.0
Identities = 548/832 (65%), Positives = 657/832 (78%), Gaps = 4/832 (0%)
Frame = +2
Query: 5 SALLDIWSYKRSIFDAPRRLKVVQDCLLKDRKLLRQPS--NETVEVRRLAITPTKAYCLP 178
+AL + SYK +FDA +RLK+VQ+ LL++ KL++ P ++ EVRRL ITPTKAYCLP
Sbjct: 368 AALKHLCSYKHPVFDASKRLKLVQEWLLRNPKLIKNPKRLDDIAEVRRLVITPTKAYCLP 427
Query: 179 AEVELSNRVLRKYKEVADRFLRVTFMDEGMXXXXXXXXXXXXAPIVRDITFSSFPQKTTA 358
EVELSNRVLRKYKEVADRFLRVTFMDEGM APIV++IT ++FPQKT
Sbjct: 428 PEVELSNRVLRKYKEVADRFLRVTFMDEGMQTMNSNVMNSYVAPIVKEITENTFPQKTKV 487
Query: 359 FRRVNQILTNGFQLCGRKYSFLAFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRN 538
+ R+ IL NGF LCGRKYSFLAFSSNQLRDRSAWFFAE TI++ I+NWMG+F+NRN
Sbjct: 488 YVRIRAILMNGFHLCGRKYSFLAFSSNQLRDRSAWFFAED-KTISIQGIKNWMGRFTNRN 546
Query: 539 VAKCTARMGQCFSSTYATINVPPNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQ 718
VAKC ARMGQCFSSTYAT+ VP +VN +L DI RN YVFSDGIG+ITPDLA+EVAEKL+
Sbjct: 547 VAKCAARMGQCFSSTYATVEVPSTQVNHELPDIERNGYVFSDGIGRITPDLAMEVAEKLK 606
Query: 719 LTDNPPSAYQIRYAGCKGVVAVWLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGF 898
L +PPSAYQIRY GCKGVVA W GDG RLSLR SMNKF S+HT LE+ SWT++QPGF
Sbjct: 607 LDRDPPSAYQIRYGGCKGVVACWPSTGDGFRLSLRRSMNKFASDHTTLEICSWTRLQPGF 666
Query: 899 LNRQIITLLSSQQVPDSVFERMQETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLS 1078
LNRQIITLLS+ VPD +F MQETM+ KL QMLVD DVA++VLT SC EQ ++AA+MLS
Sbjct: 667 LNRQIITLLSALNVPDEIFWTMQETMVSKLKQMLVDTDVAFDVLTASCAEQGNSAAIMLS 726
Query: 1079 AGFRPQTEPHLKAMISCVRSSQLGDLLAKTRIFVSKARWLMGCLDELGILEQGQCFIQTS 1258
AGF+PQTEPHL+ M++C++++QL L KTRIFV RWLMGCLDELG+LEQGQCF+Q S
Sbjct: 727 AGFKPQTEPHLRGMLTCIQAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEQGQCFVQVS 786
Query: 1259 SLSLENCFSKHGSRFSAPQKNRQVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCL 1438
+ SLENCF+KHGSRF KN QVI G V +AKNPCLHPGDIRILEAVD P LHHL DCL
Sbjct: 787 TPSLENCFAKHGSRFDQTDKNLQVIKGFVVVAKNPCLHPGDIRILEAVDAPGLHHLHDCL 846
Query: 1439 VFPQKGDRPHTNEASGSDLDGDLYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQ 1618
VFPQKG RPHT+EASGSDLDGDLYFVTWD++LIPP KKS M+Y PAE + R + Q
Sbjct: 847 VFPQKGHRPHTDEASGSDLDGDLYFVTWDENLIPPRKKSWQPMEYEPAEAKLSGRSVTSQ 906
Query: 1619 DIIDFYLKNMINENLGVICNAHVVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTL 1798
D+I+F+++NM+NENLG ICNAHVVH+DRSEYGAFDENCLKLAELAA+AVDFPKTGK+VT+
Sbjct: 907 DLIEFFVRNMVNENLGAICNAHVVHSDRSEYGAFDENCLKLAELAAVAVDFPKTGKIVTM 966
Query: 1799 PPTLKPKCYPDFMGKDGYISYKSEKVLGKLYRKIKDVTDD--IDSSETACMVEDLPYDVD 1972
PP LKPK YPDFMGK Y SYKS K+LG+LYRKI D D+ +SSE + D+ YD+D
Sbjct: 967 PPHLKPKLYPDFMGKQDYQSYKSNKILGRLYRKICDAYDEDVANSSEQNHVPSDVKYDMD 1026
Query: 1973 LEVVGSSDYLADAMQNKDVYERRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKE 2152
LEV ++D++ADA + K Y+ +L L+ QY++ E E+VTGH+WS+PK+ SRKQGEL+E
Sbjct: 1027 LEVPKAADFIADAWERKCSYDSQLRGLMTQYKIMREEEIVTGHVWSMPKYTSRKQGELQE 1086
Query: 2153 RLKNAYSSLHKEHRHAFDTMAPDFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELN 2332
RLK++YS+L KE R F+ M F L D +K YE+KASAWYQVTYHP VKKSL+L+
Sbjct: 1087 RLKHSYSALKKEFRQFFEKMDTGFESLIDDQKNSFYEQKASAWYQVTYHPDWVKKSLDLH 1146
Query: 2333 EPDLDLVPARLSFAWIAADYLVRIKIRCGDERRKLNSQRPIDSLASYLSERI 2488
PD LSFAWIAADYL RIKI+ E ++ ++PI+ L YL++RI
Sbjct: 1147 GPDGPGDVVMLSFAWIAADYLARIKIK-RREVSNIDPKKPINILTKYLADRI 1197
>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
protein [Populus trichocarpa]
Length = 1198
Score = 1107 bits (2864), Expect = 0.0
Identities = 555/833 (66%), Positives = 655/833 (78%), Gaps = 5/833 (0%)
Frame = +2
Query: 5 SALLDIWSYKRSIFDAPRRLKVVQDCLLKDRKLLRQPS--NETVEVRRLAITPTKAYCLP 178
+AL I+ Y+R +FDA ++LKV Q+ LLK+ K + ++ E+RRL ITPTKAYCLP
Sbjct: 368 AALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITPTKAYCLP 427
Query: 179 AEVELSNRVLRKYKEVADRFLRVTFMDEGMXXXXXXXXXXXXAPIVRDITFSSFPQKTTA 358
EVELSNRVLRKYK+VADRFLRVTFMDEG+ APIVR IT SFPQKT
Sbjct: 428 PEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYSFPQKTRI 487
Query: 359 FRRVNQILTNGFQLCGRKYSFLAFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRN 538
F+RV ILT GF LCGR+YSFLAFSSNQLRDRSAWFFAE N I V I++WMGKF+N+N
Sbjct: 488 FKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRN-INVMAIKSWMGKFTNKN 546
Query: 539 VAKCTARMGQCFSSTYATINVPPNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQ 718
+AKC ARMGQCFSSTYATI VPP EVN DL DI RN Y FSDGIG ITPDLA EVAEKL+
Sbjct: 547 IAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLAREVAEKLK 606
Query: 719 LTDNPPSAYQIRYAGCKGVVAVWLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGF 898
+PP AYQIRYAGCKGVVA W GDGIRLSLR SMNKF+SNHT+LE+ SWT+ QPGF
Sbjct: 607 FDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWTRFQPGF 666
Query: 899 LNRQIITLLSSQQVPDSVFERMQETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLS 1078
LNRQIITLLS+ VPD+VF +MQE M+ KLNQMLVD+DVA++VLT SC EQ + AA+MLS
Sbjct: 667 LNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGNVAAIMLS 726
Query: 1079 AGFRPQTEPHLKAMISCVRSSQLGDLLAKTRIFVSKARWLMGCLDELGILEQGQCFIQTS 1258
AGF+PQ EPHL+ M++CVR++QL L K RIFV RWLMGCLDELG+LEQGQCFIQ S
Sbjct: 727 AGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVS 786
Query: 1259 SLSLENCFSKHGSRFSAPQKNRQVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCL 1438
+ LENCF KHGS+FS +KN QV+ GTV +AKNPCLHPGDIRILEAVD P LHHL DCL
Sbjct: 787 NSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCL 846
Query: 1439 VFPQKGDRPHTNEASGSDLDGDLYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQ 1618
VFPQKG+RPH NEASGSDLDGDLYFVTWD++LIPPSK+S I M Y AE + L R + Q
Sbjct: 847 VFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLTRPVNHQ 906
Query: 1619 DIIDFYLKNMINENLGVICNAHVVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTL 1798
DI++F+ KNM NENLG ICNAHVV AD SEYGA DE CL LAELAA AVDFPKTGK+V++
Sbjct: 907 DIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPKTGKIVSM 966
Query: 1799 PPTLKPKCYPDFMGKDGYISYKSEKVLGKLYRKIKDVTDDID---SSETACMVEDLPYDV 1969
P LKPK YPDFMGK+ + SYKS+K+LG+LYR+IKD DD D SSE + D+PYD+
Sbjct: 967 PSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFVRGDIPYDL 1026
Query: 1970 DLEVVGSSDYLADAMQNKDVYERRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELK 2149
DLEV+G++D+++DA K Y+ +LN LLAQY+V E EVVTGH+WS+PK +SRKQG+LK
Sbjct: 1027 DLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSSRKQGDLK 1086
Query: 2150 ERLKNAYSSLHKEHRHAFDTMAPDFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLEL 2329
ERLK++Y+ L +E R F+ M DF QL D EK +LYERKASAWYQVTYHP ++KSLEL
Sbjct: 1087 ERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPHWIQKSLEL 1146
Query: 2330 NEPDLDLVPARLSFAWIAADYLVRIKIRCGDERRKLNSQRPIDSLASYLSERI 2488
+ D + LSFAWIAADYL RIKIR ++S +P++SLA YL++R+
Sbjct: 1147 QDSDGAGISVMLSFAWIAADYLARIKIR-HSRIGNVDSAKPVNSLAKYLADRM 1198
>ref|XP_004968861.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like [Setaria
italica]
Length = 1211
Score = 1103 bits (2854), Expect = 0.0
Identities = 551/827 (66%), Positives = 652/827 (78%), Gaps = 1/827 (0%)
Frame = +2
Query: 5 SALLDIWSYKRSIFDAPRRLKVVQDCLLKDRKLLRQP-SNETVEVRRLAITPTKAYCLPA 181
+AL + W K +FDA RRLK +QD + ++ KLLR +E EVRRL ITPT+AYCLP
Sbjct: 385 AALREFWGDKFPVFDACRRLKNLQDRVARNPKLLRNKIGHENSEVRRLVITPTRAYCLPP 444
Query: 182 EVELSNRVLRKYKEVADRFLRVTFMDEGMXXXXXXXXXXXXAPIVRDITFSSFPQKTTAF 361
EVE SNRV+R Y+EVADRFLRVTFMDEGM A IV+D+ +SF KTT +
Sbjct: 445 EVERSNRVIRHYREVADRFLRVTFMDEGMQQLNSNVLNFSAAQIVKDLMSNSFQHKTTVY 504
Query: 362 RRVNQILTNGFQLCGRKYSFLAFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRNV 541
+RV LT GF +CGRKYSFLAFSSNQLRDRSAWFFAE T TV +IR WMG+F+++NV
Sbjct: 505 KRVKTFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAED-RTRTVESIRKWMGRFTSKNV 563
Query: 542 AKCTARMGQCFSSTYATINVPPNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQL 721
AK ARMGQCFSSTYAT+ + P+EVN LED+ RN YVFSDGIGKITPDLA+EVA+ LQL
Sbjct: 564 AKHAARMGQCFSSTYATVVMQPDEVNECLEDVERNGYVFSDGIGKITPDLAMEVAKTLQL 623
Query: 722 TDNPPSAYQIRYAGCKGVVAVWLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGFL 901
TDNPPSAYQIRYAG KGV+AVW G DGIRLSLRPSM+KFES HT+LEVVSWTK QPGFL
Sbjct: 624 TDNPPSAYQIRYAGFKGVIAVWQGENDGIRLSLRPSMHKFESTHTVLEVVSWTKFQPGFL 683
Query: 902 NRQIITLLSSQQVPDSVFERMQETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLSA 1081
NRQIITLLSS VPD++F +MQE M+ LN +L D DVA++V+TTSC EQ +TAA+MLSA
Sbjct: 684 NRQIITLLSSLNVPDAIFSQMQEAMLSNLNNILSDTDVAFDVVTTSCAEQGNTAALMLSA 743
Query: 1082 GFRPQTEPHLKAMISCVRSSQLGDLLAKTRIFVSKARWLMGCLDELGILEQGQCFIQTSS 1261
GF P TEPHLKAM+ +RSSQL LL KTRIFV K RWLMGCLDELGILEQGQCFIQ SS
Sbjct: 744 GFSPGTEPHLKAMLLAIRSSQLLGLLEKTRIFVPKGRWLMGCLDELGILEQGQCFIQASS 803
Query: 1262 LSLENCFSKHGSRFSAPQKNRQVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCLV 1441
L N KHG + S+ KN + IVGTV MAKNPCLHPGD+RILEAVDVP LHHL DCLV
Sbjct: 804 PMLNNFLVKHGPKCSSANKNAETIVGTVVMAKNPCLHPGDVRILEAVDVPELHHLVDCLV 863
Query: 1442 FPQKGDRPHTNEASGSDLDGDLYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQD 1621
FP+KG+RPH NEASGSDLDGDLYFVTWD+ LIPP KKS MDYTPAE + LPRQ+ D
Sbjct: 864 FPKKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYTPAEAKQLPRQVSQHD 923
Query: 1622 IIDFYLKNMINENLGVICNAHVVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTLP 1801
I+DF+LKNM+NE LG I NAHVVHAD SEYGA DE C++LAELAA AVDFPKTGK+V++P
Sbjct: 924 IVDFFLKNMVNEKLGPISNAHVVHADTSEYGAMDEKCIQLAELAATAVDFPKTGKIVSMP 983
Query: 1802 PTLKPKCYPDFMGKDGYISYKSEKVLGKLYRKIKDVTDDIDSSETACMVEDLPYDVDLEV 1981
P+L+PK YPDFM KD I+YKS+K+LG+LYR I++ + E C + DLPYD D+EV
Sbjct: 984 PSLRPKLYPDFMQKDEAITYKSDKILGRLYRSIQEASSSDLVPEETCTLNDLPYDTDMEV 1043
Query: 1982 VGSSDYLADAMQNKDVYERRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKERLK 2161
G++D+L+ A K YE +LNALL QY V +E E+VT HIWSLPK++SRKQG++KERLK
Sbjct: 1044 PGATDFLSSAWLCKCSYEAQLNALLNQYGVRTEAELVTEHIWSLPKYSSRKQGDIKERLK 1103
Query: 2162 NAYSSLHKEHRHAFDTMAPDFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELNEPD 2341
N+YS+L KE R F+++ D ++++ EK +YE KASAWYQVTYHP+ V+KS E+ PD
Sbjct: 1104 NSYSALRKELRSTFESIETDETEISEDEKNRVYEMKASAWYQVTYHPKWVQKSREMLGPD 1163
Query: 2342 LDLVPARLSFAWIAADYLVRIKIRCGDERRKLNSQRPIDSLASYLSE 2482
+ +PARLSFAWIA DYL RIKIRC E R NSQRP++ LA+Y+SE
Sbjct: 1164 CEEMPARLSFAWIAVDYLARIKIRCQGEVRS-NSQRPVERLAAYISE 1209
>ref|XP_006645957.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like [Oryza
brachyantha]
Length = 1105
Score = 1097 bits (2837), Expect = 0.0
Identities = 549/829 (66%), Positives = 658/829 (79%), Gaps = 1/829 (0%)
Frame = +2
Query: 5 SALLDIWSYKRSIFDAPRRLKVVQDCLLKDRKLL-RQPSNETVEVRRLAITPTKAYCLPA 181
+AL D W K +FDA RRLK D + ++ KLL + ++ EVRRL ITPT+AYCLP
Sbjct: 280 AALKDFWGDKFPVFDACRRLKKALDRVARNPKLLCSKIGDDNEEVRRLVITPTRAYCLPP 339
Query: 182 EVELSNRVLRKYKEVADRFLRVTFMDEGMXXXXXXXXXXXXAPIVRDITFSSFPQKTTAF 361
EVE SNRVLR+Y+EVADRFLRVTFMDEGM APIV+D+ + F QKTT +
Sbjct: 340 EVERSNRVLRRYREVADRFLRVTFMDEGMEMLNNHVLNSFTAPIVKDLMSNYFQQKTTVY 399
Query: 362 RRVNQILTNGFQLCGRKYSFLAFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRNV 541
+RV +LT GF LCGRKYSFLAFSSNQLRD+SAWFFAE NT TV IR WMG+F+++NV
Sbjct: 400 KRVRLLLTEGFHLCGRKYSFLAFSSNQLRDKSAWFFAEDRNT-TVEGIRKWMGRFTSKNV 458
Query: 542 AKCTARMGQCFSSTYATINVPPNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQL 721
AK ARMGQCFSSTYAT+ + +EV+ + +DIV N+Y+FSDGIGKITPDLALEVAE+LQL
Sbjct: 459 AKHAARMGQCFSSTYATVTMQLDEVDENFDDIVHNDYIFSDGIGKITPDLALEVAERLQL 518
Query: 722 TDNPPSAYQIRYAGCKGVVAVWLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGFL 901
TDNPPSAYQIRYAG KGV+AVW GNGDGIRLSLRPSM KFES+H++LEVVSWTK QPGFL
Sbjct: 519 TDNPPSAYQIRYAGFKGVIAVWQGNGDGIRLSLRPSMRKFESSHSVLEVVSWTKFQPGFL 578
Query: 902 NRQIITLLSSQQVPDSVFERMQETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLSA 1081
NRQIITLLSS VPD++F +MQETM+ LN +L D DVA+EVLT SC E +TAA+MLSA
Sbjct: 579 NRQIITLLSSLNVPDAIFSQMQETMLSNLNNILSDRDVAFEVLT-SCAEDGNTAALMLSA 637
Query: 1082 GFRPQTEPHLKAMISCVRSSQLGDLLAKTRIFVSKARWLMGCLDELGILEQGQCFIQTSS 1261
GF P +EPHLKAM+ +RS+QL DLL K RIFV K RWLMGCLDELG+LEQGQCFI+ S
Sbjct: 638 GFEPGSEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCLDELGVLEQGQCFIRASV 697
Query: 1262 LSLENCFSKHGSRFSAPQKNRQVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCLV 1441
SL + F KHGSRFS+ +N ++IVGTV +AKNPCLHPGD+RILEAVDVP LHHL DCLV
Sbjct: 698 PSLNSYFKKHGSRFSSADRNTEIIVGTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLV 757
Query: 1442 FPQKGDRPHTNEASGSDLDGDLYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQD 1621
FPQKG+RPH NEASGSDLDGDLYFVTWD+ LIPP KKS MDY+P E + LPR + D
Sbjct: 758 FPQKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYSPPEAKQLPRPVSQHD 817
Query: 1622 IIDFYLKNMINENLGVICNAHVVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTLP 1801
IIDF+LKNMI+ENLG ICNAHVVHAD SEYGA DE C+ LAELAA AVDFPKTGK+ +P
Sbjct: 818 IIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLAELAATAVDFPKTGKLAIMP 877
Query: 1802 PTLKPKCYPDFMGKDGYISYKSEKVLGKLYRKIKDVTDDIDSSETACMVEDLPYDVDLEV 1981
LKPK YPDFMGK+ +SYKSEK+LG+LYR I++ ++ SE C DLPYD+DLEV
Sbjct: 878 QHLKPKVYPDFMGKEESLSYKSEKILGRLYRSIQEASNGDVVSEEVCTPNDLPYDIDLEV 937
Query: 1982 VGSSDYLADAMQNKDVYERRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKERLK 2161
G+SD+LA A Q K YE +L+ALL QY+V +E E+VTG+I S+ K+NS+KQGE+KERLK
Sbjct: 938 PGASDFLASAWQCKCSYEAQLSALLNQYKVHTEAELVTGNITSVTKYNSKKQGEIKERLK 997
Query: 2162 NAYSSLHKEHRHAFDTMAPDFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELNEPD 2341
AYS+L KE R F+++A D +L + EK +LYE KASAWYQVTYHP+ V+KS + +PD
Sbjct: 998 QAYSALRKEFRSTFESIASDQCELGEDEKNLLYEMKASAWYQVTYHPKWVEKSRGMLDPD 1057
Query: 2342 LDLVPARLSFAWIAADYLVRIKIRCGDERRKLNSQRPIDSLASYLSERI 2488
+ +PARLSFAWI DYLVRIK++ + R + Q+P+D LA+Y+SER+
Sbjct: 1058 GEGMPARLSFAWIPVDYLVRIKLKSHGKVR-VEGQKPVDRLATYISERL 1105
>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
Length = 1194
Score = 1094 bits (2829), Expect = 0.0
Identities = 554/837 (66%), Positives = 660/837 (78%), Gaps = 9/837 (1%)
Frame = +2
Query: 5 SALLDIWSYKRSIFDAPRRLKVVQDCLLKDRKLLRQPS--NETVEVRRLAITPTKAYCLP 178
+AL I SYKR +FDA +LK VQ+ LL++ KLL+ P ++ EVRRL ITPT+AYCLP
Sbjct: 364 AALKHISSYKRPVFDAYAKLKNVQEWLLRNPKLLKIPRQLDDIAEVRRLVITPTRAYCLP 423
Query: 179 AEVELSNRVLRKYKEVADRFLRVTFMDEGMXXXXXXXXXXXXAPIVRDITFSSFPQKTTA 358
EVELSNRVLRKYKEV+DRFLRVTFMDEGM APIV+++T +S QKT
Sbjct: 424 PEVELSNRVLRKYKEVSDRFLRVTFMDEGMQTMNLNVLTYYPAPIVKELTSNSTSQKTKV 483
Query: 359 FRRVNQILTNGFQLCGRKYSFLAFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRN 538
F+RV +LT+GF LCG++YSFLAFSSNQLRDRSAWFFAE ITV+ I+ WMG+F+NRN
Sbjct: 484 FKRVKSLLTDGFYLCGQRYSFLAFSSNQLRDRSAWFFAED-GKITVNGIKKWMGRFNNRN 542
Query: 539 VAKCTARMGQCFSSTYATINVPPNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQ 718
+AKC ARMGQCFSSTYAT+ VP EVN DLE+I RN YVFSDGIG ITPDLA EVAEKL+
Sbjct: 543 IAKCAARMGQCFSSTYATVEVPLTEVNFDLEEIERNTYVFSDGIGMITPDLAKEVAEKLK 602
Query: 719 LTDNPPSAYQIRYAGCKGVVAVWLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGF 898
L NPPSAYQIRYAGCKGVVA W GDGIRLSLR SMNKF+S HT+LE+ SWT+ QPGF
Sbjct: 603 LDINPPSAYQIRYAGCKGVVACWPPKGDGIRLSLRRSMNKFDSKHTILEICSWTRFQPGF 662
Query: 899 LNRQIITLLSSQQVPDSVFERMQETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLS 1078
LNRQI+TLLS+ V D +F +MQETM+ KLNQML DADVA+ VLT SC EQ + A+MLS
Sbjct: 663 LNRQIVTLLSTLNVRDEIFWKMQETMLFKLNQMLTDADVAFNVLTASCPEQGNVGAIMLS 722
Query: 1079 AGFRPQTEPHLKAMISCVRSSQLGDLLAKTRIFVSKARWLMGCLDELGILEQGQCFIQTS 1258
AGF+PQ+EPHL+ M++C+R++QL L K RIFV RWLMGCLDELG+LEQGQCFIQ S
Sbjct: 723 AGFKPQSEPHLQGMLTCIRAAQLWGLREKARIFVPLGRWLMGCLDELGVLEQGQCFIQVS 782
Query: 1259 SLSLENCFSKHGSRFSAPQKNRQVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCL 1438
+ SLENCFSKHGSRFS + N +VI G V +AKNPCLHPGDIRILEAVDVP LHHL DCL
Sbjct: 783 TPSLENCFSKHGSRFSETKNNLEVIKGFVVIAKNPCLHPGDIRILEAVDVPGLHHLYDCL 842
Query: 1439 VFPQKGDRPHTNEASGSDLDGDLYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQ 1618
VFPQKGDRPH NEASGSDLDGDLYFVTWD++LIPPSKKS M Y PA+ R LPR + +
Sbjct: 843 VFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKKSWNPMQYDPAKPRTLPRDVTQK 902
Query: 1619 DIIDFYLKNMINENLGVICNAHVVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTL 1798
DIIDF+ +NM+NE+LG ICNAHVVHAD S+YGA DE CL LAELAAIAVDFPKTG +VT+
Sbjct: 903 DIIDFFSRNMVNESLGAICNAHVVHADLSDYGALDEKCLSLAELAAIAVDFPKTGIIVTM 962
Query: 1799 PPTLKPKCYPDFMGKDGYISYKSEKVLGKLYRKIKD-VTDDID-SSETACMVEDLPYDVD 1972
P LKPK YPDFMGK+ Y SYKS K++G+LYR+IKD +DD+ SSE + ++P+D D
Sbjct: 963 PAHLKPKIYPDFMGKEEYQSYKSTKIMGRLYRQIKDEYSDDVSPSSELNIVSSNIPFDTD 1022
Query: 1973 LEVVGSSDYLADAMQNKDVYERRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKE 2152
LEV G++D+L DA + K Y+ +L L+ QY+V E EVVTG IWS+PK NSRK+G+LKE
Sbjct: 1023 LEVPGAADFLDDAWEKKCSYDGQLKGLMIQYKVKREEEVVTGQIWSMPKHNSRKEGDLKE 1082
Query: 2153 RLKNAYSSLHKEHRHAFDTMAPDFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELN 2332
RLK++Y+ L KE R F+ + DF QLTD EK VLYE++ASAWYQ+TYHP+ VKKS +++
Sbjct: 1083 RLKHSYTGLRKEFRQVFEKVDSDFEQLTDDEKNVLYEKRASAWYQITYHPKWVKKSQDMH 1142
Query: 2333 EPDLDLVP--ARLSFAWIAADYLVRIKIRC---GDERRKLNSQRPIDSLASYLSERI 2488
+ L+ V LSFAWIAADYL RIKIRC GD +S +PI+SL YL++RI
Sbjct: 1143 D-QLEEVKNVVMLSFAWIAADYLARIKIRCRGVGD----ADSTKPINSLGKYLADRI 1194
>ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor]
gi|241929916|gb|EES03061.1| hypothetical protein
SORBIDRAFT_03g022880 [Sorghum bicolor]
Length = 1207
Score = 1093 bits (2828), Expect = 0.0
Identities = 540/826 (65%), Positives = 650/826 (78%), Gaps = 1/826 (0%)
Frame = +2
Query: 5 SALLDIWSYKRSIFDAPRRLKVVQDCLLKDRKLLRQP-SNETVEVRRLAITPTKAYCLPA 181
+AL + W K +FDA RLK +QD + + KLLR ++ EVRRL +TPTKAYCLP
Sbjct: 381 AALREFWGDKFPVFDACGRLKNLQDRVARYPKLLRNKIGDDNSEVRRLVVTPTKAYCLPP 440
Query: 182 EVELSNRVLRKYKEVADRFLRVTFMDEGMXXXXXXXXXXXXAPIVRDITFSSFPQKTTAF 361
EVE SNRV+R Y+EV DRFLRVTFMDEGM A IV+D+ +SF KTT +
Sbjct: 441 EVERSNRVIRHYREVTDRFLRVTFMDEGMQLLNSNVLNFSAAQIVKDLMSNSFLHKTTVY 500
Query: 362 RRVNQILTNGFQLCGRKYSFLAFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRNV 541
+R+ LT GF +CGRKYSFLAFSSNQLRDRSAWFFAE TV IR WMG+F+++NV
Sbjct: 501 KRIKTFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAED-RMRTVETIRKWMGRFTSKNV 559
Query: 542 AKCTARMGQCFSSTYATINVPPNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQL 721
AK ARMGQCFSSTYAT+ + P+EVN LE++ RN Y+FSDGIGKIT DLALEVA+KL+L
Sbjct: 560 AKHAARMGQCFSSTYATVVMQPHEVNECLEEVERNGYIFSDGIGKITCDLALEVAQKLRL 619
Query: 722 TDNPPSAYQIRYAGCKGVVAVWLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGFL 901
TDNPPSAYQIRYAG KGV+AVW G DGIRLSLRPSM+KFESNH +LEVVSWTK QPGFL
Sbjct: 620 TDNPPSAYQIRYAGFKGVIAVWEGENDGIRLSLRPSMHKFESNHNVLEVVSWTKFQPGFL 679
Query: 902 NRQIITLLSSQQVPDSVFERMQETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLSA 1081
NRQIITLLSS VPD++F +MQE M+ LN +L D DVA++++TTSC EQ +TAA+MLSA
Sbjct: 680 NRQIITLLSSLNVPDAIFSQMQEAMLSNLNNILSDTDVAFDIVTTSCAEQGNTAALMLSA 739
Query: 1082 GFRPQTEPHLKAMISCVRSSQLGDLLAKTRIFVSKARWLMGCLDELGILEQGQCFIQTSS 1261
G P TEPHLKAM+ +RSSQL LL KTRIFV K RWLMGCLDELGILEQGQCFI+ SS
Sbjct: 740 GISPGTEPHLKAMLLAIRSSQLLGLLEKTRIFVPKGRWLMGCLDELGILEQGQCFIRASS 799
Query: 1262 LSLENCFSKHGSRFSAPQKNRQVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCLV 1441
SL NC KHG RFS+ KN + IVGT+ MAKNPCLHPGD+RILEAVDVP LHHL DCLV
Sbjct: 800 PSLNNCLVKHGPRFSSANKNAETIVGTIVMAKNPCLHPGDVRILEAVDVPELHHLVDCLV 859
Query: 1442 FPQKGDRPHTNEASGSDLDGDLYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQD 1621
FP+KG+RPH NEASGSDLDGDLYFVTWD++LIPP KKS MDY+P E + LPR + P D
Sbjct: 860 FPKKGERPHANEASGSDLDGDLYFVTWDENLIPPGKKSWNPMDYSPTEAKQLPRAVSPHD 919
Query: 1622 IIDFYLKNMINENLGVICNAHVVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTLP 1801
I+DF+LKNM+NE LG I NAHVVHAD SEYGA DE C++LAELAA AVDFPKTGK+V++P
Sbjct: 920 IVDFFLKNMVNEKLGPISNAHVVHADMSEYGAMDEKCIQLAELAATAVDFPKTGKIVSMP 979
Query: 1802 PTLKPKCYPDFMGKDGYISYKSEKVLGKLYRKIKDVTDDIDSSETACMVEDLPYDVDLEV 1981
P+L+PK YPDFMGK+ ISYKSEK+LG+LYR I++ + E C + DLPYD D+EV
Sbjct: 980 PSLRPKLYPDFMGKEDAISYKSEKILGRLYRSIQEASSGDLVPEETCTLNDLPYDADMEV 1039
Query: 1982 VGSSDYLADAMQNKDVYERRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKERLK 2161
G++D+L+ A + K YE +LNALL QY V +E E+VT HIWSLPK++SRKQG++KERLK
Sbjct: 1040 PGATDFLSSAWECKCSYETQLNALLNQYGVRTEAELVTEHIWSLPKYSSRKQGDIKERLK 1099
Query: 2162 NAYSSLHKEHRHAFDTMAPDFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELNEPD 2341
NAYS+LHK+ R F++ D +++D EK YE KASAWYQVTYHP+ V+KS E+ +PD
Sbjct: 1100 NAYSALHKDFRSIFESFVTDQTEISDDEKIRFYEMKASAWYQVTYHPKWVQKSREMLKPD 1159
Query: 2342 LDLVPARLSFAWIAADYLVRIKIRCGDERRKLNSQRPIDSLASYLS 2479
+ +PARLSFAWI ++L RIKIRC E K++S+RP++ LA+Y+S
Sbjct: 1160 FEDMPARLSFAWIGVEHLARIKIRCHGE-VKVDSRRPVERLAAYIS 1204
>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
sinensis]
Length = 1197
Score = 1090 bits (2818), Expect = 0.0
Identities = 553/833 (66%), Positives = 654/833 (78%), Gaps = 5/833 (0%)
Frame = +2
Query: 5 SALLDIWSYKRSIFDAPRRLKVVQDCLLKDRKLLRQPS--NETVEVRRLAITPTKAYCLP 178
+AL I+SYK +FDA +RLK+VQ+ LLKD +L + P ++ VEVRRL ITPTKAYCLP
Sbjct: 368 AALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLP 427
Query: 179 AEVELSNRVLRKYKEVADRFLRVTFMDEGMXXXXXXXXXXXXAPIVRDITFSSFPQKTTA 358
EVELSNRVLRKYK++ADRFLRVTFMDEG+ APIVRDIT +SF QKT
Sbjct: 428 PEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRV 487
Query: 359 FRRVNQILTNGFQLCGRKYSFLAFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRN 538
F+RV IL+ GF LCGRK+SFLAFSS+QLRD SAWFF+E T +V +I+ WMG+F+++N
Sbjct: 488 FKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKT-SVLDIKKWMGRFTDKN 546
Query: 539 VAKCTARMGQCFSSTYATINVPPNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQ 718
+AKC ARMGQCFSSTYAT+ VPP EV+P+L DI RN YVFSDGIGKITPDLA+EVA+KL+
Sbjct: 547 IAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLK 606
Query: 719 LTDNPPS-AYQIRYAGCKGVVAVWLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPG 895
L NPP AYQIRYAGCKGVVA W GDGIR+SLR SMNKF+S+HT LE+ SWT+ QPG
Sbjct: 607 LDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPG 666
Query: 896 FLNRQIITLLSSQQVPDSVFERMQETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMML 1075
FLNRQIITLLS+ VPD +F MQ++M+ KLNQMLVD+DVA+EVLT +C EQ +TAA+ML
Sbjct: 667 FLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIML 726
Query: 1076 SAGFRPQTEPHLKAMISCVRSSQLGDLLAKTRIFVSKARWLMGCLDELGILEQGQCFIQT 1255
SAGF PQTEPHL+ M++C+R++QL L K RIFV RWLMGCLDELG+LE GQCFIQ
Sbjct: 727 SAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQV 786
Query: 1256 SSLSLENCFSKHGSRFSAPQKNRQVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDC 1435
S L NCFSKHGSRF A K QVI G V +AKNPCLHPGDIRILEAVD P LHHL DC
Sbjct: 787 SEPFLGNCFSKHGSRF-AETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDC 845
Query: 1436 LVFPQKGDRPHTNEASGSDLDGDLYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFP 1615
LVFPQKGDRPHTNEASGSDLDGDLYFVTWD++LIPPSKKS M+Y AE + L R +
Sbjct: 846 LVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQ 905
Query: 1616 QDIIDFYLKNMINENLGVICNAHVVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVT 1795
+DII+F+ K+M+NENLG ICNAHVVHAD SEYGA DENC+ LAELAA AVDFPKTGK+VT
Sbjct: 906 RDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVT 965
Query: 1796 LPPTLKPKCYPDFMGKDGYISYKSEKVLGKLYRKIKDVTD-DID-SSETACMVEDLPYDV 1969
+P LKPK YPDFMGK+ Y SYKS K+LG+LYR+ KD D DI SSE D+ YD
Sbjct: 966 MPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDT 1025
Query: 1970 DLEVVGSSDYLADAMQNKDVYERRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELK 2149
DLEV S D++ADA K Y+ +LN LL QY+V+ E E+VTGHIWS+PK+NSRKQGELK
Sbjct: 1026 DLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELK 1085
Query: 2150 ERLKNAYSSLHKEHRHAFDTMAPDFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLEL 2329
ERLK++YS+L KE R F+ M D L++ EK L+ERKASAWYQVTYHP+ VKKSL+L
Sbjct: 1086 ERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDL 1145
Query: 2330 NEPDLDLVPARLSFAWIAADYLVRIKIRCGDERRKLNSQRPIDSLASYLSERI 2488
E D LSFAWIA DYL RIKIRC E +++ +P++ LA Y+++RI
Sbjct: 1146 QEQDSARSVVLLSFAWIANDYLARIKIRC-REMANIDTSKPVNYLARYVADRI 1197
>sp|Q8LHH9.1|SHL2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase SHL2; AltName:
Full=Protein SHOOTLESS 2 gi|21328146|dbj|BAC00725.1|
putative RNA-dependent RNA polymerase [Oryza sativa
Japonica Group] gi|157279691|dbj|BAF80151.1| SHOOTLESS2
[Oryza sativa Japonica Group]
Length = 1218
Score = 1087 bits (2810), Expect = 0.0
Identities = 542/829 (65%), Positives = 650/829 (78%), Gaps = 1/829 (0%)
Frame = +2
Query: 5 SALLDIWSYKRSIFDAPRRLKVVQDCLLKDRKLL-RQPSNETVEVRRLAITPTKAYCLPA 181
+AL D W K +FDA RLK + + ++ KLL + ++ EVRRL ITPT+AYCLP
Sbjct: 392 AALRDFWGDKFPVFDACGRLKKALNRVARNPKLLCSKVGDDHAEVRRLVITPTRAYCLPP 451
Query: 182 EVELSNRVLRKYKEVADRFLRVTFMDEGMXXXXXXXXXXXXAPIVRDITFSSFPQKTTAF 361
EVE SNRVLR Y EVADRFLRVTFMDEGM APIV+D+ + F QKTT +
Sbjct: 452 EVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLMSNFFQQKTTVY 511
Query: 362 RRVNQILTNGFQLCGRKYSFLAFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRNV 541
+RV +LT GF +CGRKYSFLAFSSNQLRD+SAWFFAE T TV IR WMG+F+++NV
Sbjct: 512 KRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKT-TVEAIRKWMGRFTSKNV 570
Query: 542 AKCTARMGQCFSSTYATINVPPNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQL 721
AK ARMGQCFSSTYAT+ + P+EV+ +D+V NEY+FSDGIGKITPDLALEVAE+LQL
Sbjct: 571 AKHAARMGQCFSSTYATVTMRPDEVDESFDDVVHNEYIFSDGIGKITPDLALEVAERLQL 630
Query: 722 TDNPPSAYQIRYAGCKGVVAVWLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGFL 901
TDNPPSAYQIR+AG KGV+AVW G+GDG RL LRPSM KFESNH +LEVVSWTK QPGFL
Sbjct: 631 TDNPPSAYQIRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHLVLEVVSWTKFQPGFL 690
Query: 902 NRQIITLLSSQQVPDSVFERMQETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLSA 1081
NRQII LLSS VPDS+F +MQETM+ LN +L D DVA+EVLTTSC + +TAA+MLSA
Sbjct: 691 NRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFEVLTTSCADDGNTAALMLSA 750
Query: 1082 GFRPQTEPHLKAMISCVRSSQLGDLLAKTRIFVSKARWLMGCLDELGILEQGQCFIQTSS 1261
GF P+TEPHLKAM+ +RS+QL DLL K RIFV K RWLMGCLDELG+LEQGQCFI+ +
Sbjct: 751 GFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCLDELGVLEQGQCFIRATV 810
Query: 1262 LSLENCFSKHGSRFSAPQKNRQVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCLV 1441
SL + F KHGSRFS+ KN +VI+GTV +AKNPCLHPGD+RILEAVDVP LHHL DCLV
Sbjct: 811 PSLNSYFVKHGSRFSSTDKNTEVILGTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLV 870
Query: 1442 FPQKGDRPHTNEASGSDLDGDLYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQD 1621
FPQKG+RPH NEASGSDLDGDLYFVTWD+ LIPP KKS MDY+P E + LPRQ+ D
Sbjct: 871 FPQKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYSPPEAKQLPRQVSQHD 930
Query: 1622 IIDFYLKNMINENLGVICNAHVVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTLP 1801
IIDF+LKNMI+ENLG ICNAHVVHAD SEYGA DE C+ LAELAA AVDFPKTGK+ +P
Sbjct: 931 IIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLAELAATAVDFPKTGKLAIMP 990
Query: 1802 PTLKPKCYPDFMGKDGYISYKSEKVLGKLYRKIKDVTDDIDSSETACMVEDLPYDVDLEV 1981
P LKPK YPDFMGK+ SYKSEK+LG+LYR I++ ++ S+ C DLPYD+DLEV
Sbjct: 991 PHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQEASNGDVVSQEVCTPNDLPYDIDLEV 1050
Query: 1982 VGSSDYLADAMQNKDVYERRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKERLK 2161
G+SD+LA A Q K Y+ +L+ALL+QYRV +E E+VTGHI L K +S+KQG++K+RLK
Sbjct: 1051 PGASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHITFLVKNSSKKQGDIKDRLK 1110
Query: 2162 NAYSSLHKEHRHAFDTMAPDFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELNEPD 2341
AYS+L KE + F+++A D ++ D EK +LYE KASAWYQVTYHP+ V+KS + PD
Sbjct: 1111 TAYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQVTYHPKWVEKSRGILGPD 1170
Query: 2342 LDLVPARLSFAWIAADYLVRIKIRCGDERRKLNSQRPIDSLASYLSERI 2488
+ +PA LSFAWI DYL RIK+RC + R + Q+P++ LA+Y+SERI
Sbjct: 1171 GEEIPASLSFAWIPVDYLARIKLRCHGKVR-VEGQKPVERLAAYISERI 1218
>gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
Length = 1196
Score = 1083 bits (2801), Expect = 0.0
Identities = 549/834 (65%), Positives = 652/834 (78%), Gaps = 6/834 (0%)
Frame = +2
Query: 5 SALLDIWSYKRSIFDAPRRLKVVQDCLLKDRKLLRQPS--NETVEVRRLAITPTKAYCLP 178
+AL + SY+ +FDA RLKVVQD LLK+ KL++ P ++ EVRRL ITPTKAYCLP
Sbjct: 367 AALKHLCSYRSPVFDACERLKVVQDWLLKNPKLVKDPKRLDDIAEVRRLVITPTKAYCLP 426
Query: 179 AEVELSNRVLRKYKEVADRFLRVTFMDEGMXXXXXXXXXXXXAPIVRDITFSSFPQKTTA 358
EVELSNRVLRKYKEVADRFLRVTFMDEGM APIV++IT +SF QKT
Sbjct: 427 PEVELSNRVLRKYKEVADRFLRVTFMDEGMQKINSNVLNYYVAPIVKEITSNSFLQKTNV 486
Query: 359 FRRVNQILTNGFQLCGRKYSFLAFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRN 538
F+R IL +GF LCGRKY+FLAFSSNQLRDRSAWFFAE VN I+V I +WMGKF+N+N
Sbjct: 487 FKRFRTILNDGFYLCGRKYTFLAFSSNQLRDRSAWFFAECVN-ISVGKITSWMGKFNNKN 545
Query: 539 VAKCTARMGQCFSSTYATINVPPNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQ 718
VAKC ARMGQCFSSTYAT+ V +EVN D+ DI RN YVFSDGIG ITPDLALEVAEKL+
Sbjct: 546 VAKCAARMGQCFSSTYATVEVTSSEVN-DIPDIKRNGYVFSDGIGMITPDLALEVAEKLK 604
Query: 719 LTDNPPSAYQIRYAGCKGVVAVWLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGF 898
L NPP AYQIR+AGCKGVVA W GDG RLSLR SMNKFES HT LE+ SWT+ QPGF
Sbjct: 605 LDRNPPCAYQIRFAGCKGVVACWPSKGDGFRLSLRTSMNKFESKHTTLEICSWTRYQPGF 664
Query: 899 LNRQIITLLSSQQVPDSVFERMQETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLS 1078
LNRQIITLLS+ V D +F RMQE M+ KLNQMLVD DVA++VLT SC EQ + AA+MLS
Sbjct: 665 LNRQIITLLSTLNVEDEIFWRMQEKMVLKLNQMLVDTDVAFDVLTASCAEQGNAAAIMLS 724
Query: 1079 AGFRPQTEPHLKAMISCVRSSQLGDLLAKTRIFVSKARWLMGCLDELGILEQGQCFIQTS 1258
AGF+PQTEPHL+ M++C++++QL L K RIFV RWLMG LDELG+LEQGQCF+Q S
Sbjct: 725 AGFKPQTEPHLRGMLTCIQAAQLWGLREKARIFVHSGRWLMGVLDELGVLEQGQCFVQVS 784
Query: 1259 SLSLENCFSKHGSRFSAPQKNRQVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCL 1438
+ LE+CF+KHGS F+ ++N QVI G V +AKNPCLHPGDIRILEAVD P LHHL DCL
Sbjct: 785 TPLLESCFAKHGSSFAQIERNLQVIKGHVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCL 844
Query: 1439 VFPQKGDRPHTNEASGSDLDGDLYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQ 1618
VFPQKGDRPHT+EASGSDLDGDLYFVTWD++LIPPSKKS + M Y PAE + R + Q
Sbjct: 845 VFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSKKSWMPMQYDPAEAKLQGRPVTQQ 904
Query: 1619 DIIDFYLKNMINENLGVICNAHVVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTL 1798
DIIDF++KNM NENLG ICNAHVVHADRS+YGA D NCLKLAELAA+AVDFPKTGK+V+L
Sbjct: 905 DIIDFFVKNMTNENLGPICNAHVVHADRSDYGALDVNCLKLAELAALAVDFPKTGKIVSL 964
Query: 1799 PPTLKPKCYPDFMGKDGYISYKSEKVLGKLYRKIKDVTDD--IDSSETACMVEDLPYDVD 1972
P LKP+ YPDF+GK+ SYKS K+LG+LYRK++D D+ SSE D+PYD+D
Sbjct: 965 PQHLKPRLYPDFLGKEDNQSYKSTKILGRLYRKVRDAYDEDAATSSELHYFPSDIPYDMD 1024
Query: 1973 LEVVGSSDYLADAMQNKDVYERRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKE 2152
LEV G++D++ DA + K Y+ +L L+ QY+V E E+VTGH+WS+PK NS+KQGELKE
Sbjct: 1025 LEVPGAADFVFDAWEKKCSYDGQLKGLMGQYKVKREEEIVTGHVWSIPKSNSKKQGELKE 1084
Query: 2153 RLKNAYSSLHKEHRHAFDTMAPDFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELN 2332
RL ++Y++L KE R F+ + + LTD EK +L E+KASAWYQVTYHP+ VK+S L
Sbjct: 1085 RLSHSYNALKKEFRQMFENLDSNLEALTDDEKNLLCEKKASAWYQVTYHPKWVKQSPPLQ 1144
Query: 2333 EPD-LDLVPARLSFAWIAADYLVRIKIRC-GDERRKLNSQRPIDSLASYLSERI 2488
EPD V LSFAWIAADYL RIKI+C G E ++S +PI+SL YL++RI
Sbjct: 1145 EPDGPGDVVVMLSFAWIAADYLARIKIKCHGVEH--IDSTKPINSLKRYLADRI 1196
>ref|XP_003561343.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like
[Brachypodium distachyon]
Length = 1208
Score = 1082 bits (2797), Expect = 0.0
Identities = 541/830 (65%), Positives = 650/830 (78%), Gaps = 2/830 (0%)
Frame = +2
Query: 5 SALLDIWSYKRSIFDAPRRLKVVQDCLLKDRKLLR--QPSNETVEVRRLAITPTKAYCLP 178
+AL + W K +F+A +RL+ + + KLLR + ++ VEVRRL ITPT A CLP
Sbjct: 383 AALKEFWGDKFPVFNARKRLEHAHRRVASNPKLLRSGKVGDDNVEVRRLVITPTSASCLP 442
Query: 179 AEVELSNRVLRKYKEVADRFLRVTFMDEGMXXXXXXXXXXXXAPIVRDITFSSFPQKTTA 358
++ELSNRVLR Y EVADRFLRVTFMDEGM APIV+ + +SF QKT
Sbjct: 443 PQIELSNRVLRHYHEVADRFLRVTFMDEGMQSLNNNVLNFYTAPIVKALRPNSFQQKTAV 502
Query: 359 FRRVNQILTNGFQLCGRKYSFLAFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRN 538
++RV LT GF +CGRKYSFLAFSSNQLRDRSAWFFAE T TV +IR WMG+F+++N
Sbjct: 503 YKRVKMFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAEDSKT-TVESIRKWMGRFTSKN 561
Query: 539 VAKCTARMGQCFSSTYATINVPPNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQ 718
VAK ARMGQCFSSTYAT+ V P+EVN LED+ RN Y FSDGIGKITPDLA+EVAEKLQ
Sbjct: 562 VAKHAARMGQCFSSTYATVMVKPDEVNESLEDVERNNYTFSDGIGKITPDLAMEVAEKLQ 621
Query: 719 LTDNPPSAYQIRYAGCKGVVAVWLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGF 898
L D+PPSAYQIRYAG KGV+AVW GN +GIRLSLRPSM KFES H++LEVVSWT+ QPGF
Sbjct: 622 LMDSPPSAYQIRYAGYKGVIAVWQGNNNGIRLSLRPSMKKFESKHSVLEVVSWTRFQPGF 681
Query: 899 LNRQIITLLSSQQVPDSVFERMQETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLS 1078
LNRQII LLSS V D +F +MQE+M+ LN++L+D+DVA+EV+TTSC EQ +TAA+MLS
Sbjct: 682 LNRQIILLLSSLNVSDDIFSQMQESMLFNLNKILLDSDVAFEVVTTSCAEQGNTAALMLS 741
Query: 1079 AGFRPQTEPHLKAMISCVRSSQLGDLLAKTRIFVSKARWLMGCLDELGILEQGQCFIQTS 1258
AGF P TEPHL+ M+ +RS+QL DLL KTRIFV K RWLMGCLDELG+LEQGQCF+Q S
Sbjct: 742 AGFGPGTEPHLRGMLLAIRSAQLQDLLEKTRIFVPKGRWLMGCLDELGVLEQGQCFVQAS 801
Query: 1259 SLSLENCFSKHGSRFSAPQKNRQVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCL 1438
+ SL+ CF KHGSRFSA KN +IVGTV +AKNPCLHPGD+RILEAVDVP LHHL DCL
Sbjct: 802 AASLDRCFLKHGSRFSA-NKNTDIIVGTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCL 860
Query: 1439 VFPQKGDRPHTNEASGSDLDGDLYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQ 1618
VFPQKG+RPH NEASGSDLDGDLYFVTWD+ L+PP KKS MDY+PAE + RQ+
Sbjct: 861 VFPQKGERPHPNEASGSDLDGDLYFVTWDEKLVPPGKKSWNPMDYSPAEAKQQQRQVSQH 920
Query: 1619 DIIDFYLKNMINENLGVICNAHVVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTL 1798
DI+DF+LKNM+NENLG ICNAHVVHAD SEYGA DE C++LAELAA AVDFPKTGK+VT+
Sbjct: 921 DIVDFFLKNMVNENLGPICNAHVVHADLSEYGAMDEKCIRLAELAATAVDFPKTGKLVTM 980
Query: 1799 PPTLKPKCYPDFMGKDGYISYKSEKVLGKLYRKIKDVTDDIDSSETACMVEDLPYDVDLE 1978
PP L+PK YPDFM K+ SYKSEK+LG+LYR I++ + SE AC + DL YD DLE
Sbjct: 981 PPELRPKIYPDFMLKEESRSYKSEKILGRLYRSIQEASGGDLVSEEACTLNDLLYDTDLE 1040
Query: 1979 VVGSSDYLADAMQNKDVYERRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKERL 2158
V G+S +L A + K YE +LN LL Q RV +E E+VTGH+WSLPK+NSRKQGE++ER+
Sbjct: 1041 VPGASRFLTSAWECKCNYEGQLNVLLNQSRVCTEAELVTGHVWSLPKYNSRKQGEIRERI 1100
Query: 2159 KNAYSSLHKEHRHAFDTMAPDFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELNEP 2338
KNAY++L KE+R F+++ D Q+TD EK +LYERKASAWYQVTYHP+ V+K + +
Sbjct: 1101 KNAYAALQKEYRSVFESLT-DQCQITDDEKNLLYERKASAWYQVTYHPKWVEKLRAMLDE 1159
Query: 2339 DLDLVPARLSFAWIAADYLVRIKIRCGDERRKLNSQRPIDSLASYLSERI 2488
D + PARLSFAWIA DYLVRIK+R K ++P++ LA+Y+SERI
Sbjct: 1160 DGEERPARLSFAWIAVDYLVRIKLR-SHGGVKAEGRKPVERLAAYISERI 1208
>emb|CBI21038.3| unnamed protein product [Vitis vinifera]
Length = 1035
Score = 1081 bits (2796), Expect = 0.0
Identities = 559/834 (67%), Positives = 651/834 (78%), Gaps = 6/834 (0%)
Frame = +2
Query: 5 SALLDIWSYKRSIFDAPRRLKVVQDCLLKDRKLLRQPS--NETVEVRRLAITPTKAYCLP 178
+AL I SY+ +FDA +RLK+V LLK+ KLL+ P ++ VEVRRL ITP+KAYCLP
Sbjct: 208 AALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVITPSKAYCLP 267
Query: 179 AEVELSNRVLRKYKEVADRFLRVTFMDEGMXXXXXXXXXXXXAPIVRDITFSSFPQKTTA 358
EVELSNRVLR YKEV+DRFLRVTFMDEGM APIV+ IT +SFPQKT
Sbjct: 268 PEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITSNSFPQKTRV 327
Query: 359 FRRVNQILTNGFQLCGRKYSFLAFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRN 538
F+RV ILT+GF LCGRKYSFLAFSSNQLRDRSAWFFAE T +V I++WMGKF+NRN
Sbjct: 328 FKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKT-SVRAIKSWMGKFTNRN 386
Query: 539 VAKCTARMGQCFSSTYATINVPPNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQ 718
VAKC ARMGQCFSSTYAT+ VP EV +L DI RN Y FSDGIGKI PDLA+EVAEKL+
Sbjct: 387 VAKCAARMGQCFSSTYATVEVPSWEVK-ELPDIKRNGYDFSDGIGKIVPDLAMEVAEKLK 445
Query: 719 LTDNPPSAYQIRYAGCKGVVAVWLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGF 898
L + PSAYQIRYAGCKGVVA W + DGIRLS RPSMNKF S+HT+LE+ SWT+ QPGF
Sbjct: 446 L-EGTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICSWTRFQPGF 504
Query: 899 LNRQIITLLSSQQVPDSVFERMQETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLS 1078
LNRQI+TLLS+ VPD +F +MQE+MI KLNQML D DVA++VL SC EQ +TAA+MLS
Sbjct: 505 LNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQGNTAAIMLS 564
Query: 1079 AGFRPQTEPHLKAMISCVRSSQLGDLLAKTRIFVSKARWLMGCLDELGILEQGQCFIQTS 1258
AGF+PQTEPHL+ M++C+R++Q L K RIFV RWLMGCLDELG+LEQGQCFIQ S
Sbjct: 565 AGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVS 624
Query: 1259 SLSLENCFSKHGSRFSAPQKNRQVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCL 1438
S SLENCF KHGSRFSA QKN +VI G VA+AKNPCLHPGD+RILEAVD P L HL DCL
Sbjct: 625 SPSLENCFLKHGSRFSA-QKNLKVIKGIVAIAKNPCLHPGDVRILEAVDAPGLEHLVDCL 683
Query: 1439 VFPQKGDRPHTNEASGSDLDGDLYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQ 1618
VFPQKGDRPH+NEASGSDLDGDLYFVTW++ LIPPSK+S M Y AE + L R++
Sbjct: 684 VFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKALAREVTSL 743
Query: 1619 DIIDFYLKNMINENLGVICNAHVVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTL 1798
DIIDF+ KNM+NENLG ICNAHVVHADRSEYGA DE CL LAE AA AVDFPKTGK+VTL
Sbjct: 744 DIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFPKTGKLVTL 803
Query: 1799 PPTLKPKCYPDFMGKDGYISYKSEKVLGKLYRKIKDV--TDDIDSSETACMVEDLPYDVD 1972
PP LKPK YPDFMGK+ + +Y+S K+LGK+YR+IKD D +SSE + +P+D D
Sbjct: 804 PPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGADKVPFDED 863
Query: 1973 LEVVGSSDYLADAMQNKDVYERRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKE 2152
L + GS+D++ DA +K Y+ +LN LL QY+V E EVVTGH+WS+PK+ SRKQGEL E
Sbjct: 864 LGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKSRKQGELTE 923
Query: 2153 RLKNAYSSLHKEHRHAFDTMAPDFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELN 2332
RLK+AYSSL KE R F+ M DF QLTD EK LYE+KASAWYQVTYHP VKKSLEL
Sbjct: 924 RLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTWVKKSLELQ 983
Query: 2333 EPDLDLVPAR--LSFAWIAADYLVRIKIRCGDERRKLNSQRPIDSLASYLSERI 2488
PD ++ R LSFAWI ADYL RIKIR ++S +PI+SLA +L +RI
Sbjct: 984 NPD-EVFGERVMLSFAWITADYLARIKIR-RKGTGNVDSSKPINSLARFLVDRI 1035
>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
Length = 1197
Score = 1081 bits (2796), Expect = 0.0
Identities = 559/834 (67%), Positives = 651/834 (78%), Gaps = 6/834 (0%)
Frame = +2
Query: 5 SALLDIWSYKRSIFDAPRRLKVVQDCLLKDRKLLRQPS--NETVEVRRLAITPTKAYCLP 178
+AL I SY+ +FDA +RLK+V LLK+ KLL+ P ++ VEVRRL ITP+KAYCLP
Sbjct: 370 AALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVITPSKAYCLP 429
Query: 179 AEVELSNRVLRKYKEVADRFLRVTFMDEGMXXXXXXXXXXXXAPIVRDITFSSFPQKTTA 358
EVELSNRVLR YKEV+DRFLRVTFMDEGM APIV+ IT +SFPQKT
Sbjct: 430 PEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITSNSFPQKTRV 489
Query: 359 FRRVNQILTNGFQLCGRKYSFLAFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRN 538
F+RV ILT+GF LCGRKYSFLAFSSNQLRDRSAWFFAE T +V I++WMGKF+NRN
Sbjct: 490 FKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKT-SVRAIKSWMGKFTNRN 548
Query: 539 VAKCTARMGQCFSSTYATINVPPNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQ 718
VAKC ARMGQCFSSTYAT+ VP EV +L DI RN Y FSDGIGKI PDLA+EVAEKL+
Sbjct: 549 VAKCAARMGQCFSSTYATVEVPSWEVK-ELPDIKRNGYDFSDGIGKIVPDLAMEVAEKLK 607
Query: 719 LTDNPPSAYQIRYAGCKGVVAVWLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGF 898
L + PSAYQIRYAGCKGVVA W + DGIRLS RPSMNKF S+HT+LE+ SWT+ QPGF
Sbjct: 608 L-EGTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICSWTRFQPGF 666
Query: 899 LNRQIITLLSSQQVPDSVFERMQETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLS 1078
LNRQI+TLLS+ VPD +F +MQE+MI KLNQML D DVA++VL SC EQ +TAA+MLS
Sbjct: 667 LNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQGNTAAIMLS 726
Query: 1079 AGFRPQTEPHLKAMISCVRSSQLGDLLAKTRIFVSKARWLMGCLDELGILEQGQCFIQTS 1258
AGF+PQTEPHL+ M++C+R++Q L K RIFV RWLMGCLDELG+LEQGQCFIQ S
Sbjct: 727 AGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVS 786
Query: 1259 SLSLENCFSKHGSRFSAPQKNRQVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCL 1438
S SLENCF KHGSRFSA QKN +VI G VA+AKNPCLHPGD+RILEAVD P L HL DCL
Sbjct: 787 SPSLENCFLKHGSRFSA-QKNLKVIKGIVAIAKNPCLHPGDVRILEAVDAPGLEHLVDCL 845
Query: 1439 VFPQKGDRPHTNEASGSDLDGDLYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQ 1618
VFPQKGDRPH+NEASGSDLDGDLYFVTW++ LIPPSK+S M Y AE + L R++
Sbjct: 846 VFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKALAREVTSL 905
Query: 1619 DIIDFYLKNMINENLGVICNAHVVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTL 1798
DIIDF+ KNM+NENLG ICNAHVVHADRSEYGA DE CL LAE AA AVDFPKTGK+VTL
Sbjct: 906 DIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFPKTGKLVTL 965
Query: 1799 PPTLKPKCYPDFMGKDGYISYKSEKVLGKLYRKIKDV--TDDIDSSETACMVEDLPYDVD 1972
PP LKPK YPDFMGK+ + +Y+S K+LGK+YR+IKD D +SSE + +P+D D
Sbjct: 966 PPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGADKVPFDED 1025
Query: 1973 LEVVGSSDYLADAMQNKDVYERRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKE 2152
L + GS+D++ DA +K Y+ +LN LL QY+V E EVVTGH+WS+PK+ SRKQGEL E
Sbjct: 1026 LGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKSRKQGELTE 1085
Query: 2153 RLKNAYSSLHKEHRHAFDTMAPDFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELN 2332
RLK+AYSSL KE R F+ M DF QLTD EK LYE+KASAWYQVTYHP VKKSLEL
Sbjct: 1086 RLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTWVKKSLELQ 1145
Query: 2333 EPDLDLVPAR--LSFAWIAADYLVRIKIRCGDERRKLNSQRPIDSLASYLSERI 2488
PD ++ R LSFAWI ADYL RIKIR ++S +PI+SLA +L +RI
Sbjct: 1146 NPD-EVFGERVMLSFAWITADYLARIKIR-RKGTGNVDSSKPINSLARFLVDRI 1197
>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
Length = 1197
Score = 1077 bits (2786), Expect = 0.0
Identities = 549/835 (65%), Positives = 653/835 (78%), Gaps = 7/835 (0%)
Frame = +2
Query: 5 SALLDIWSYKRSIFDAPRRLKVVQDCLLKDRKLLRQPS--NETVEVRRLAITPTKAYCLP 178
+AL ++SYK + DA ++L +Q LLK+ KLL + ++ VEVRRL ITPTKAYCLP
Sbjct: 368 AALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLERTGELDDIVEVRRLVITPTKAYCLP 427
Query: 179 AEVELSNRVLRKYKEVADRFLRVTFMDEGMXXXXXXXXXXXXAPIVRDITFSSFPQKTTA 358
VELSNRVLR YK VADRFLRVTFMDEGM A IVR+IT +S PQ+T
Sbjct: 428 PTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAI 487
Query: 359 FRRVNQILTNGFQLCGRKYSFLAFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRN 538
F+RV IL+ GF LCGRKYSFLAFS+NQLRDRSAWFFAE I V I +WMG+FSNRN
Sbjct: 488 FQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPK-IRVPGIISWMGRFSNRN 546
Query: 539 VAKCTARMGQCFSSTYATINVPPNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQ 718
VAKC ARMGQCFSSTYAT+ VP +EVN +L DI RN YVFSDGIG I+ DLA+EVAEKL
Sbjct: 547 VAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEVAEKLH 606
Query: 719 LTDNPPSAYQIRYAGCKGVVAVWLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGF 898
L+ NPP+AYQIRYAGCKGVVA W DGIRLSLRPSM KF+SNHT+LE+ SWT+ QPGF
Sbjct: 607 LSVNPPAAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGF 666
Query: 899 LNRQIITLLSSQQVPDSVFERMQETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLS 1078
LNRQI+TLLSS V D +F MQ+ MI L++MLVD+DVA++V+T SC E +TAA+MLS
Sbjct: 667 LNRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFDVITASCAEAGNTAALMLS 726
Query: 1079 AGFRPQTEPHLKAMISCVRSSQLGDLLAKTRIFVSKARWLMGCLDELGILEQGQCFIQTS 1258
AGF+PQ+EPHL+ M+S +R+SQLGDL K RIFV RWLMGCLDELG LEQGQCFIQ S
Sbjct: 727 AGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVS 786
Query: 1259 SLSLENCFSKHGSRFSAPQKNRQVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCL 1438
S SLENCF KHGS+FS +KN QV+ G V +AKNPCLHPGD+RILEAVDVPSL HL DCL
Sbjct: 787 SPSLENCFVKHGSKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCL 846
Query: 1439 VFPQKGDRPHTNEASGSDLDGDLYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQ 1618
VFPQKGDRPH+NEASGSDLDGDLYFVTWD+++IPPSKKS I M+Y PAEV+ L RQ+
Sbjct: 847 VFPQKGDRPHSNEASGSDLDGDLYFVTWDENIIPPSKKSWIPMNYEPAEVKQLGRQVNHM 906
Query: 1619 DIIDFYLKNMINENLGVICNAHVVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTL 1798
DIIDF+ KNM+ E+LG ICNAHVVHAD SE+GA DE CLKLAELAA+AVDFPKTGK+VT+
Sbjct: 907 DIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTM 966
Query: 1799 PPTLKPKCYPDFMGKDGYISYKSEKVLGKLYRKIKDVTDDID--SSETACMVEDLPYDVD 1972
P LKPK YPDFMGK+ + SYKS+K+LGKLYR++KDV D S+ + +D+PYD
Sbjct: 967 PFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDTT 1026
Query: 1973 LEVVGSSDYLADAMQNKDVYERRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKE 2152
LE++GS+ ++ DA +K Y+ +LN LL QY+V+ E EVVTGHIWS+PK++++KQGELKE
Sbjct: 1027 LEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKE 1086
Query: 2153 RLKNAYSSLHKEHRHAFDTMAPDFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELN 2332
RLK+AY++L KE R+ F+ M PDF L D EK +YERKASAWYQVTYHP V +SLEL
Sbjct: 1087 RLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWVARSLELQ 1146
Query: 2333 EPDLDLVPARLSFAWIAADYLVRIKIRCGDERRKL---NSQRPIDSLASYLSERI 2488
PD LSFAWIAADYL RIKIR R L +S +PI+SL YL+++I
Sbjct: 1147 IPDAVSSTVMLSFAWIAADYLARIKIR----HRGLPYSDSTKPINSLGRYLADKI 1197
>ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
Length = 1197
Score = 1073 bits (2774), Expect = 0.0
Identities = 531/833 (63%), Positives = 646/833 (77%), Gaps = 5/833 (0%)
Frame = +2
Query: 5 SALLDIWSYKRSIFDAPRRLKVVQDCLLKDRKLLRQPSN--ETVEVRRLAITPTKAYCLP 178
+AL I +++R + DA ++LK+VQ+ LLK+ LL++ + VE+RRL ITP+KAYC P
Sbjct: 367 AALSHIHAFRRPVLDACKKLKLVQEWLLKNPTLLKRSKELVDIVEIRRLVITPSKAYCFP 426
Query: 179 AEVELSNRVLRKYKEVADRFLRVTFMDEGMXXXXXXXXXXXXAPIVRDITFSSFPQKTTA 358
EVELSNRVLR+YK+VADRFLRVTFMDEGM APIV++IT SSFPQKT
Sbjct: 427 PEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSFPQKTKI 486
Query: 359 FRRVNQILTNGFQLCGRKYSFLAFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRN 538
F R+ IL +GF LCGRKYSFLA+SSNQLRD+SAWFFAE +I+V I WMGKF+N+N
Sbjct: 487 FARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAEC-KSISVDAILGWMGKFTNKN 545
Query: 539 VAKCTARMGQCFSSTYATINVPPNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQ 718
VAKC AR+GQCFSSTYATI VP N VN DL D+ RN YVFSDGIG ITPDLA EVA+KL+
Sbjct: 546 VAKCAARIGQCFSSTYATIEVPRNMVNHDLSDVERNGYVFSDGIGTITPDLAQEVADKLK 605
Query: 719 LTDNPPSAYQIRYAGCKGVVAVWLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGF 898
+ +PP AYQIRYAG KGVVA W DGIRL+LRPSMNKFESNH +LE+ SWT+ QPGF
Sbjct: 606 MDGSPPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSMNKFESNHRILEICSWTRFQPGF 665
Query: 899 LNRQIITLLSSQQVPDSVFERMQETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLS 1078
LNRQIITLLS+ VPD +F MQETMI KL++M+ D DVA+EVLT SC EQ + AA+MLS
Sbjct: 666 LNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGNAAAIMLS 725
Query: 1079 AGFRPQTEPHLKAMISCVRSSQLGDLLAKTRIFVSKARWLMGCLDELGILEQGQCFIQTS 1258
AGF P+TEPHL+ M+ C+R++QL L K RIFV++ RW MGC DE G+L++GQCFIQ S
Sbjct: 726 AGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQCFIQVS 785
Query: 1259 SLSLENCFSKHGSRFSAPQKNRQVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCL 1438
+ LE CFSKHGS F+ + N V+ GTV +AKNPCLHPGD+RILEAVD P LHHL DCL
Sbjct: 786 TPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHHLYDCL 845
Query: 1439 VFPQKGDRPHTNEASGSDLDGDLYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQ 1618
VFP+ G+RPHTNEASGSDLDGDLYF TWD +LIPPSKKS M+Y PAEV+ L R+I
Sbjct: 846 VFPRNGERPHTNEASGSDLDGDLYFTTWDGNLIPPSKKSWPPMEYAPAEVKTLQRKITRW 905
Query: 1619 DIIDFYLKNMINENLGVICNAHVVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTL 1798
DI++F+ KNMINE+LG ICNAHVVHADRS++GA DENC++L+ELAA AVDFPKTGK+VT+
Sbjct: 906 DIMEFFAKNMINESLGTICNAHVVHADRSKHGALDENCIQLSELAATAVDFPKTGKLVTM 965
Query: 1799 PPTLKPKCYPDFMGKDGYISYKSEKVLGKLYRKIKDVTDD---IDSSETACMVEDLPYDV 1969
PP LKPK YPDFMGK+ SYKS K+LGK+YR+I+D DD I S E D+ YDV
Sbjct: 966 PPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGDVHYDV 1025
Query: 1970 DLEVVGSSDYLADAMQNKDVYERRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELK 2149
DLEV G+ D++A+A K Y+ +L+ LL QY+V+ E E+VTGHIWS+PK+ SRKQGELK
Sbjct: 1026 DLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRKQGELK 1085
Query: 2150 ERLKNAYSSLHKEHRHAFDTMAPDFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLEL 2329
E+LK++YS+L K+ R F+ + P+F QLT E+ LYE+KASAWYQV YHP +KKSLEL
Sbjct: 1086 EKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNALYEKKASAWYQVAYHPTWLKKSLEL 1145
Query: 2330 NEPDLDLVPARLSFAWIAADYLVRIKIRCGDERRKLNSQRPIDSLASYLSERI 2488
EPD LSF WIAADYL RIKI+C + + +PI+SLASYLS+R+
Sbjct: 1146 REPDAPEAVPMLSFPWIAADYLARIKIKC-RRTKSFDPTKPINSLASYLSDRM 1197
>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 1073 bits (2774), Expect = 0.0
Identities = 549/835 (65%), Positives = 650/835 (77%), Gaps = 7/835 (0%)
Frame = +2
Query: 5 SALLDIWSYKRSIFDAPRRLKVVQDCLLKDRKLLRQPS--NETVEVRRLAITPTKAYCLP 178
+AL ++SYK + DA ++L +Q LLK+ KLL + ++ VEVRRL ITPTKAYCLP
Sbjct: 368 AALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLDRTGELDDIVEVRRLVITPTKAYCLP 427
Query: 179 AEVELSNRVLRKYKEVADRFLRVTFMDEGMXXXXXXXXXXXXAPIVRDITFSSFPQKTTA 358
VELSNRVLR YK VADRFLRVTFMDEGM A IVR+IT +S PQ+T
Sbjct: 428 PTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAI 487
Query: 359 FRRVNQILTNGFQLCGRKYSFLAFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRN 538
F+RV IL+ GF LCGRKYSFLAFS+NQLRDRSAWFFAE I V I +WMG+FSNRN
Sbjct: 488 FQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPK-IRVPGIISWMGRFSNRN 546
Query: 539 VAKCTARMGQCFSSTYATINVPPNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQ 718
VAKC ARMGQCFSSTYAT+ VP +EVN +L DI RN YVFSDGIG I+ DLA+EVAEKL
Sbjct: 547 VAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAIEVAEKLH 606
Query: 719 LTDNPPSAYQIRYAGCKGVVAVWLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGF 898
L+ NPPSAYQIRYAGCKGVVA W DGIRLSLRPSM KF+SNHT+LE+ SWT+ QPGF
Sbjct: 607 LSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGF 666
Query: 899 LNRQIITLLSSQQVPDSVFERMQETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLS 1078
LNRQI+TLLSS V D +F MQ+ MI L++MLVD+DVA++V+T SC E +TAA+MLS
Sbjct: 667 LNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAALMLS 726
Query: 1079 AGFRPQTEPHLKAMISCVRSSQLGDLLAKTRIFVSKARWLMGCLDELGILEQGQCFIQTS 1258
AGF+PQ+EPHL+ M+S +R+SQLGDL K RIFV RWLMGCLDELG LEQGQCFIQ S
Sbjct: 727 AGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVS 786
Query: 1259 SLSLENCFSKHGSRFSAPQKNRQVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCL 1438
S SLENCF KHG +FS +KN QV+ G V +AKNPCLHPGD+RILEAVDVPSL HL DCL
Sbjct: 787 SPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCL 846
Query: 1439 VFPQKGDRPHTNEASGSDLDGDLYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQ 1618
VFPQKGDRPH+NEASGSDLDGDLYFVTWD++LIPPSKKS I M+Y PAEV+ L RQ+
Sbjct: 847 VFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHM 906
Query: 1619 DIIDFYLKNMINENLGVICNAHVVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTL 1798
DIIDF+ KNM+ E+LG ICNAHVVHAD SE+GA DE CLKLAELAA+AVDFPKTGK+VT+
Sbjct: 907 DIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTM 966
Query: 1799 PPTLKPKCYPDFMGKDGYISYKSEKVLGKLYRKIKDVTDDID--SSETACMVEDLPYDVD 1972
P LKPK YPDFMGK+ + SYKS+K+LGKLYR++KDV D S+ + +D+PYD
Sbjct: 967 PFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDTT 1026
Query: 1973 LEVVGSSDYLADAMQNKDVYERRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKE 2152
LE++GS+ ++ DA +K Y+ +LN LL QY+V+ E EVVTG+IWS+PK+N++KQGELKE
Sbjct: 1027 LEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGYIWSMPKYNAKKQGELKE 1086
Query: 2153 RLKNAYSSLHKEHRHAFDTMAPDFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELN 2332
RLK+AY++L KE R+ F+ M PDF L D EK +YERKASAWYQVTYHP V +SLEL
Sbjct: 1087 RLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWVARSLELQ 1146
Query: 2333 EPDLDLVPARLSFAWIAADYLVRIKIRCGDERRKL---NSQRPIDSLASYLSERI 2488
D LSFAWIAADYL RIKIR R+L +S +PI+SL YL + I
Sbjct: 1147 LADAVSNTVMLSFAWIAADYLARIKIR----HRRLQYSDSTKPINSLGRYLVDNI 1197
>ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis sativus]
gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase
6 [Cucumis sativus]
Length = 1197
Score = 1073 bits (2774), Expect = 0.0
Identities = 531/833 (63%), Positives = 646/833 (77%), Gaps = 5/833 (0%)
Frame = +2
Query: 5 SALLDIWSYKRSIFDAPRRLKVVQDCLLKDRKLLRQPSN--ETVEVRRLAITPTKAYCLP 178
+AL I +++R + DA ++LK+VQ+ LLK+ LL++ + VE+RRL ITP+KAYC P
Sbjct: 367 AALSHIHAFRRPVLDACKKLKLVQEWLLKNPTLLKRSKELVDIVEIRRLVITPSKAYCFP 426
Query: 179 AEVELSNRVLRKYKEVADRFLRVTFMDEGMXXXXXXXXXXXXAPIVRDITFSSFPQKTTA 358
EVELSNRVLR+YK+VADRFLRVTFMDEGM APIV++IT SSFPQKT
Sbjct: 427 PEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSFPQKTKI 486
Query: 359 FRRVNQILTNGFQLCGRKYSFLAFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRN 538
F R+ IL +GF LCGRKYSFLA+SSNQLRD+SAWFFAE +I+V I WMGKF+N+N
Sbjct: 487 FARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAEC-KSISVDAILGWMGKFTNKN 545
Query: 539 VAKCTARMGQCFSSTYATINVPPNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQ 718
VAKC AR+GQCFSSTYATI VP N VN DL D+ RN YVFSDGIG ITPDLA EVA+KL+
Sbjct: 546 VAKCAARIGQCFSSTYATIEVPRNMVNHDLSDVERNGYVFSDGIGTITPDLAQEVADKLK 605
Query: 719 LTDNPPSAYQIRYAGCKGVVAVWLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGF 898
+ +PP AYQIRYAG KGVVA W DGIRL+LRPSMNKFESNH +LE+ SWT+ QPGF
Sbjct: 606 MDGSPPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSMNKFESNHRILEICSWTRFQPGF 665
Query: 899 LNRQIITLLSSQQVPDSVFERMQETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLS 1078
LNRQIITLLS+ VPD +F MQETMI KL++M+ D DVA+EVLT SC EQ + AA+MLS
Sbjct: 666 LNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLTASCAEQGNAAAIMLS 725
Query: 1079 AGFRPQTEPHLKAMISCVRSSQLGDLLAKTRIFVSKARWLMGCLDELGILEQGQCFIQTS 1258
AGF P+TEPHL+ M+ C+R++QL L K RIFV++ RW MGC DE G+L++GQCFIQ S
Sbjct: 726 AGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQCFIQVS 785
Query: 1259 SLSLENCFSKHGSRFSAPQKNRQVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCL 1438
+ LE CFSKHGS F+ + N V+ GTV +AKNPCLHPGD+RILEAVD P LHHL DCL
Sbjct: 786 TPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHHLYDCL 845
Query: 1439 VFPQKGDRPHTNEASGSDLDGDLYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQ 1618
VFP+ G+RPHTNEASGSDLDGDLYF TWD +LIPPSKKS M+Y PAEV+ L R+I
Sbjct: 846 VFPRNGERPHTNEASGSDLDGDLYFTTWDGNLIPPSKKSWPPMEYAPAEVKTLQRKITRW 905
Query: 1619 DIIDFYLKNMINENLGVICNAHVVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTL 1798
DI++F+ KNMINE+LG ICNAHVVHADRS++GA DENC++L+ELAA AVDFPKTGK+VT+
Sbjct: 906 DIMEFFAKNMINESLGTICNAHVVHADRSKHGALDENCIQLSELAATAVDFPKTGKLVTM 965
Query: 1799 PPTLKPKCYPDFMGKDGYISYKSEKVLGKLYRKIKDVTDD---IDSSETACMVEDLPYDV 1969
PP LKPK YPDFMGK+ SYKS K+LGK+YR+I+D DD I S E D+ YDV
Sbjct: 966 PPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGDVHYDV 1025
Query: 1970 DLEVVGSSDYLADAMQNKDVYERRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELK 2149
DLEV G+ D++A+A K Y+ +L+ LL QY+V+ E E+VTGHIWS+PK+ SRKQGELK
Sbjct: 1026 DLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRKQGELK 1085
Query: 2150 ERLKNAYSSLHKEHRHAFDTMAPDFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLEL 2329
E+LK++YS+L K+ R F+ + P+F QLT E+ LYE+KASAWYQV YHP +KKSLEL
Sbjct: 1086 EKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNALYEKKASAWYQVAYHPTWLKKSLEL 1145
Query: 2330 NEPDLDLVPARLSFAWIAADYLVRIKIRCGDERRKLNSQRPIDSLASYLSERI 2488
EPD LSF WIAADYL RIKI+C + + +PI+SLASYLS+R+
Sbjct: 1146 REPDAPEAVPMLSFPWIAADYLARIKIKC-RRTKSFDPTKPINSLASYLSDRM 1197
>gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
Length = 1197
Score = 1071 bits (2770), Expect = 0.0
Identities = 543/832 (65%), Positives = 640/832 (76%), Gaps = 4/832 (0%)
Frame = +2
Query: 5 SALLDIWSYKRSIFDAPRRLKVVQDCLLKDRKLLRQPS--NETVEVRRLAITPTKAYCLP 178
+AL I+SY+R +FDA +RLK V D LL++ L + P ++ VE+RRL ITPTKA+CL
Sbjct: 368 AALKHIYSYRRPVFDAYKRLKTVHDWLLRNPILFKSPKQLDDIVEIRRLVITPTKAHCLL 427
Query: 179 AEVELSNRVLRKYKEVADRFLRVTFMDEGMXXXXXXXXXXXXAPIVRDITFSSFPQKTTA 358
EVELSNRVLRKYKEVADRFLRVTFMDEGM A IVRD+T + F QKT
Sbjct: 428 PEVELSNRVLRKYKEVADRFLRVTFMDEGMQTINANVLTYYAASIVRDVTSTFFSQKTGV 487
Query: 359 FRRVNQILTNGFQLCGRKYSFLAFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRN 538
F+RV ILT+GF LCGRKYSFLAFS+NQLRD SAWFFAE T +V I WMGKF+NRN
Sbjct: 488 FKRVRSILTDGFYLCGRKYSFLAFSANQLRDSSAWFFAEDGKT-SVLQILRWMGKFTNRN 546
Query: 539 VAKCTARMGQCFSSTYATINVPPNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQ 718
+AKC ARMGQCFSSTYAT+ VP EVNP L DI RN YVFSDGIGKITPDLA EVA+KL+
Sbjct: 547 IAKCAARMGQCFSSTYATVEVPSTEVNPFLPDIERNGYVFSDGIGKITPDLAKEVAQKLK 606
Query: 719 LTDNPPSAYQIRYAGCKGVVAVWLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGF 898
L NPP AYQIRYAGCKGVVA W GDG+RLSLR SMNKF S+HT LE+ SWT+ QPGF
Sbjct: 607 LDLNPPCAYQIRYAGCKGVVACWPEEGDGVRLSLRCSMNKFFSDHTTLEICSWTRFQPGF 666
Query: 899 LNRQIITLLSSQQVPDSVFERMQETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLS 1078
LNRQIITLLS+Q VPD VF MQ TM+ KLN++LVD DVA+EVLT+SC+EQ + AA+MLS
Sbjct: 667 LNRQIITLLSTQYVPDEVFWEMQNTMVSKLNKILVDTDVAFEVLTSSCSEQGNAAAIMLS 726
Query: 1079 AGFRPQTEPHLKAMISCVRSSQLGDLLAKTRIFVSKARWLMGCLDELGILEQGQCFIQTS 1258
AGF+PQTEPHL+ +++CVR+SQL L K RIFV RWLMG LDELG+LEQGQCFIQ S
Sbjct: 727 AGFKPQTEPHLRGILTCVRASQLCGLREKARIFVPSGRWLMGVLDELGVLEQGQCFIQVS 786
Query: 1259 SLSLENCFSKHGSRFSAPQKNRQVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCL 1438
+ S+ENCF KHGSRF+ +KN +VI G V +AKNPCLHPGDIRILEAVD P LHHL DCL
Sbjct: 787 NPSVENCFLKHGSRFAETKKNFEVIQGLVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCL 846
Query: 1439 VFPQKGDRPHTNEASGSDLDGDLYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQ 1618
VFPQKG+RPHTNEASGSDLDGDLYFVTW+ LIPP KKS M Y P E + + R++ +
Sbjct: 847 VFPQKGERPHTNEASGSDLDGDLYFVTWEDLLIPPGKKSWPPMQYDPGETKEIQREVNHK 906
Query: 1619 DIIDFYLKNMINENLGVICNAHVVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTL 1798
DIIDF+ KNM+NE+LG ICNAHVVHAD SEYGA DE C+ LAELAA AVDFPKTGK+V++
Sbjct: 907 DIIDFFAKNMVNEHLGTICNAHVVHADLSEYGALDEKCIHLAELAATAVDFPKTGKIVSM 966
Query: 1799 PPTLKPKCYPDFMGKDGYISYKSEKVLGKLYRKIKDVTDD--IDSSETACMVEDLPYDVD 1972
P LKPK YPDFMGK+ Y SYKS K+LG+LYR IKDV D+ +SSE D+ YD D
Sbjct: 967 PANLKPKLYPDFMGKEEYQSYKSRKILGRLYRHIKDVYDEDLSESSEINLDSPDINYDTD 1026
Query: 1973 LEVVGSSDYLADAMQNKDVYERRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKE 2152
LEV GS+DY+ DA K Y+R+L LL QY+V E EVVTGHIWS+PK+ SRK G+LKE
Sbjct: 1027 LEVTGSADYIDDAWVKKCSYDRQLIGLLGQYKVKREEEVVTGHIWSMPKYTSRKLGDLKE 1086
Query: 2153 RLKNAYSSLHKEHRHAFDTMAPDFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELN 2332
+L ++Y +L KE R F++M + QL + E+ LYERKASAWYQVTYHP+ V+K LEL
Sbjct: 1087 KLGHSYGALRKEFRQIFESMDSEIEQLNEDERNELYERKASAWYQVTYHPKWVEKKLELQ 1146
Query: 2333 EPDLDLVPARLSFAWIAADYLVRIKIRCGDERRKLNSQRPIDSLASYLSERI 2488
+ D LSFAWIAADYL RIKIR ++ +P++SL YL+++I
Sbjct: 1147 KSDGADPVVMLSFAWIAADYLARIKIR-SQGTGNVDFSKPVNSLVKYLADKI 1197
>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 1070 bits (2767), Expect = 0.0
Identities = 548/835 (65%), Positives = 650/835 (77%), Gaps = 7/835 (0%)
Frame = +2
Query: 5 SALLDIWSYKRSIFDAPRRLKVVQDCLLKDRKLLRQPS--NETVEVRRLAITPTKAYCLP 178
+AL ++SYK + DA ++L +Q LLK+ KLL + ++ VEVRRL ITPTKAYCLP
Sbjct: 368 AALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLDRTGELDDIVEVRRLVITPTKAYCLP 427
Query: 179 AEVELSNRVLRKYKEVADRFLRVTFMDEGMXXXXXXXXXXXXAPIVRDITFSSFPQKTTA 358
VELSNRVLR YK VADRFLRVTFMDEGM A IVR+IT +S PQ+T
Sbjct: 428 PTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAI 487
Query: 359 FRRVNQILTNGFQLCGRKYSFLAFSSNQLRDRSAWFFAEVVNTITVSNIRNWMGKFSNRN 538
F+RV IL+ GF LCGRKYSFLAFS+NQLRDRSAWFFAE I V I +WMG+FSNRN
Sbjct: 488 FQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPK-IRVPGIISWMGRFSNRN 546
Query: 539 VAKCTARMGQCFSSTYATINVPPNEVNPDLEDIVRNEYVFSDGIGKITPDLALEVAEKLQ 718
VAKC ARMGQCFSSTYAT+ VP EVN +L DI RN YVFSDGIG I+ DLA+EVAEKL
Sbjct: 547 VAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLAIEVAEKLH 606
Query: 719 LTDNPPSAYQIRYAGCKGVVAVWLGNGDGIRLSLRPSMNKFESNHTMLEVVSWTKIQPGF 898
L+ NPPSAYQIRYAGCKGVVA W DGIRLSLRPSM KF+SNHT+LE+ SWT+ QPGF
Sbjct: 607 LSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGF 666
Query: 899 LNRQIITLLSSQQVPDSVFERMQETMIHKLNQMLVDADVAYEVLTTSCTEQSSTAAMMLS 1078
LNRQI+TLLSS V D +F MQ+ MI L++MLVD+DVA++V+T SC E +TAA+MLS
Sbjct: 667 LNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAAIMLS 726
Query: 1079 AGFRPQTEPHLKAMISCVRSSQLGDLLAKTRIFVSKARWLMGCLDELGILEQGQCFIQTS 1258
AGF+PQ+EPHL+ M+S +R+SQLGDL K RIFV RWLMGCLDELG LEQGQCFIQ S
Sbjct: 727 AGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVS 786
Query: 1259 SLSLENCFSKHGSRFSAPQKNRQVIVGTVAMAKNPCLHPGDIRILEAVDVPSLHHLSDCL 1438
S SLENCF KHG +FS ++N QV+ G V +AKNPCLHPGD+RILEAVDVPSL HL DCL
Sbjct: 787 SPSLENCFVKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCL 846
Query: 1439 VFPQKGDRPHTNEASGSDLDGDLYFVTWDQDLIPPSKKSSIAMDYTPAEVRNLPRQIFPQ 1618
VFPQKGDRPH+NEASGSDLDGDLYFVTWD++LIPPSKKS I M+Y PAEV+ L RQ+
Sbjct: 847 VFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHM 906
Query: 1619 DIIDFYLKNMINENLGVICNAHVVHADRSEYGAFDENCLKLAELAAIAVDFPKTGKMVTL 1798
DIIDF+ KNM+ E+LG ICNAHVVHAD SE+GA DE CLKLAELAA+AVDFPKTGK+VT+
Sbjct: 907 DIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTM 966
Query: 1799 PPTLKPKCYPDFMGKDGYISYKSEKVLGKLYRKIKDVTDDID--SSETACMVEDLPYDVD 1972
P LKPK YPDFMGK+ + SYKS+K+LGKLYR++KDV D S+ + +D+PYD
Sbjct: 967 PFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDST 1026
Query: 1973 LEVVGSSDYLADAMQNKDVYERRLNALLAQYRVSSEGEVVTGHIWSLPKFNSRKQGELKE 2152
LE++GS+ ++ DA +K Y+ +L+ LL QY+V+ E EVVTGHIWS+PK++++KQGELKE
Sbjct: 1027 LEILGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKE 1086
Query: 2153 RLKNAYSSLHKEHRHAFDTMAPDFLQLTDAEKGVLYERKASAWYQVTYHPQLVKKSLELN 2332
RLK+AY++L KE R+ F+ M PDF L D EK +YERKASAWYQVTYHP V +SLEL
Sbjct: 1087 RLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYHPHWVARSLELQ 1146
Query: 2333 EPDLDLVPARLSFAWIAADYLVRIKIRCGDERRKL---NSQRPIDSLASYLSERI 2488
PD LSFAWIAADYL RIKIR R+L +S +PI+SL YL + I
Sbjct: 1147 LPDAVSNTVMLSFAWIAADYLARIKIR----HRRLQYSDSTKPINSLGRYLVDNI 1197