BLASTX nr result
ID: Zingiber23_contig00010260
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00010260
(394 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EEE58387.1| hypothetical protein OsJ_09549 [Oryza sativa Japo... 99 4e-19
gb|EMT05432.1| 40S ribosomal protein S28 [Aegilops tauschii] 99 8e-19
gb|EMS68105.1| 40S ribosomal protein S28 [Triticum urartu] 99 8e-19
tpg|DAA43569.1| TPA: 40S ribosomal protein S28 [Zea mays] 99 8e-19
tpg|DAA43568.1| TPA: 40S ribosomal protein S28, partial [Zea mays] 99 8e-19
gb|EEC74585.1| hypothetical protein OsI_10164 [Oryza sativa Indi... 99 8e-19
gb|EEC66929.1| hypothetical protein OsI_33537 [Oryza sativa Indi... 99 8e-19
gb|ACG31085.1| 40S ribosomal protein S28 [Zea mays] 99 8e-19
ref|NP_001064584.1| Os10g0411700 [Oryza sativa Japonica Group] g... 99 8e-19
gb|AAP80664.1|AF479045_1 S28 ribosomal protein, partial [Triticu... 99 8e-19
ref|XP_003575874.1| PREDICTED: uncharacterized protein LOC100831... 98 1e-18
ref|XP_003575873.1| PREDICTED: 40S ribosomal protein S28-like [B... 98 1e-18
ref|XP_003574115.1| PREDICTED: 40S ribosomal protein S28-like [B... 98 1e-18
emb|CAA04565.1| rpS28 [Hordeum vulgare subsp. vulgare] 96 5e-18
ref|NP_001105548.1| 40S ribosomal protein S28 [Zea mays] gi|1173... 96 6e-18
ref|XP_006481678.1| PREDICTED: 40S ribosomal protein S28-like [C... 95 8e-18
ref|XP_006429965.1| hypothetical protein CICLE_v10013157mg [Citr... 95 8e-18
gb|ACG26633.1| 40S ribosomal protein S28 [Zea mays] 95 8e-18
gb|EOY09636.1| Nucleic acid-binding, OB-fold-like protein [Theob... 95 1e-17
ref|XP_002520788.1| ribosomal protein S28, putative [Ricinus com... 95 1e-17
>gb|EEE58387.1| hypothetical protein OsJ_09549 [Oryza sativa Japonica Group]
Length = 93
Score = 99.4 bits (246), Expect = 4e-19
Identities = 49/52 (94%), Positives = 51/52 (98%)
Frame = +2
Query: 2 IMDSQAKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 157
+MD+Q KLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 28 LMDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 79
>gb|EMT05432.1| 40S ribosomal protein S28 [Aegilops tauschii]
Length = 107
Score = 98.6 bits (244), Expect = 8e-19
Identities = 49/51 (96%), Positives = 50/51 (98%)
Frame = +2
Query: 5 MDSQAKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 157
MD+Q KLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 43 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 93
>gb|EMS68105.1| 40S ribosomal protein S28 [Triticum urartu]
Length = 115
Score = 98.6 bits (244), Expect = 8e-19
Identities = 49/51 (96%), Positives = 50/51 (98%)
Frame = +2
Query: 5 MDSQAKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 157
MD+Q KLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 51 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 101
>tpg|DAA43569.1| TPA: 40S ribosomal protein S28 [Zea mays]
Length = 68
Score = 98.6 bits (244), Expect = 8e-19
Identities = 49/51 (96%), Positives = 50/51 (98%)
Frame = +2
Query: 5 MDSQAKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 157
MD+Q KLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 4 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 54
>tpg|DAA43568.1| TPA: 40S ribosomal protein S28, partial [Zea mays]
Length = 103
Score = 98.6 bits (244), Expect = 8e-19
Identities = 49/51 (96%), Positives = 50/51 (98%)
Frame = +2
Query: 5 MDSQAKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 157
MD+Q KLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 39 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 89
>gb|EEC74585.1| hypothetical protein OsI_10164 [Oryza sativa Indica Group]
Length = 101
Score = 98.6 bits (244), Expect = 8e-19
Identities = 49/51 (96%), Positives = 50/51 (98%)
Frame = +2
Query: 5 MDSQAKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 157
MD+Q KLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 37 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 87
>gb|EEC66929.1| hypothetical protein OsI_33537 [Oryza sativa Indica Group]
Length = 400
Score = 98.6 bits (244), Expect = 8e-19
Identities = 49/51 (96%), Positives = 50/51 (98%)
Frame = +2
Query: 5 MDSQAKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 157
MD+Q KLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 336 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 386
>gb|ACG31085.1| 40S ribosomal protein S28 [Zea mays]
Length = 65
Score = 98.6 bits (244), Expect = 8e-19
Identities = 49/51 (96%), Positives = 50/51 (98%)
Frame = +2
Query: 5 MDSQAKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 157
MD+Q KLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 51
>ref|NP_001064584.1| Os10g0411700 [Oryza sativa Japonica Group]
gi|226492207|ref|NP_001147283.1| 40S ribosomal protein
S28 [Zea mays] gi|226528567|ref|NP_001147474.1| 40S
ribosomal protein S28 [Zea mays]
gi|226530547|ref|NP_001147106.1| 40S ribosomal protein
S28 [Zea mays] gi|297600386|ref|NP_001049079.2|
Os03g0167100 [Oryza sativa Japonica Group]
gi|242042107|ref|XP_002468448.1| hypothetical protein
SORBIDRAFT_01g046070 [Sorghum bicolor]
gi|514816860|ref|XP_004983165.1| PREDICTED: 40S
ribosomal protein S28-like [Setaria italica]
gi|514821804|ref|XP_004985578.1| PREDICTED: 40S
ribosomal protein S28-like [Setaria italica]
gi|582044877|pdb|3J60|CC Chain c, Localization Of The
Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-em
Map Of Triticum Aestivum Translating 80s Ribosome
gi|113639193|dbj|BAF26498.1| Os10g0411700 [Oryza sativa
Japonica Group] gi|194704454|gb|ACF86311.1| unknown [Zea
mays] gi|195605026|gb|ACG24343.1| 40S ribosomal protein
S28 [Zea mays] gi|195605034|gb|ACG24347.1| 40S ribosomal
protein S28 [Zea mays] gi|195607258|gb|ACG25459.1| 40S
ribosomal protein S28 [Zea mays]
gi|195609472|gb|ACG26566.1| 40S ribosomal protein S28
[Zea mays] gi|195609816|gb|ACG26738.1| 40S ribosomal
protein S28 [Zea mays] gi|195610066|gb|ACG26863.1| 40S
ribosomal protein S28 [Zea mays]
gi|195611640|gb|ACG27650.1| 40S ribosomal protein S28
[Zea mays] gi|195618106|gb|ACG30883.1| 40S ribosomal
protein S28 [Zea mays] gi|195618338|gb|ACG30999.1| 40S
ribosomal protein S28 [Zea mays]
gi|195618690|gb|ACG31175.1| 40S ribosomal protein S28
[Zea mays] gi|195619662|gb|ACG31661.1| 40S ribosomal
protein S28 [Zea mays] gi|195620148|gb|ACG31904.1| 40S
ribosomal protein S28 [Zea mays]
gi|195655603|gb|ACG47269.1| 40S ribosomal protein S28
[Zea mays] gi|195655989|gb|ACG47462.1| 40S ribosomal
protein S28 [Zea mays] gi|222612816|gb|EEE50948.1|
hypothetical protein OsJ_31495 [Oryza sativa Japonica
Group] gi|241922302|gb|EER95446.1| hypothetical protein
SORBIDRAFT_01g046070 [Sorghum bicolor]
gi|255674234|dbj|BAF10993.2| Os03g0167100 [Oryza sativa
Japonica Group] gi|326509929|dbj|BAJ87180.1| predicted
protein [Hordeum vulgare subsp. vulgare]
gi|326526071|dbj|BAJ93212.1| predicted protein [Hordeum
vulgare subsp. vulgare] gi|413956006|gb|AFW88655.1| 40S
ribosomal protein S28 isoform 1 [Zea mays]
gi|413956007|gb|AFW88656.1| 40S ribosomal protein S28
isoform 2 [Zea mays] gi|414865013|tpg|DAA43570.1| TPA:
40S ribosomal protein S28 [Zea mays]
gi|414866364|tpg|DAA44921.1| TPA: 40S ribosomal protein
S28 isoform 1 [Zea mays] gi|414866365|tpg|DAA44922.1|
TPA: 40S ribosomal protein S28 isoform 2 [Zea mays]
gi|414866366|tpg|DAA44923.1| TPA: 40S ribosomal protein
S28 isoform 3 [Zea mays] gi|414866367|tpg|DAA44924.1|
TPA: 40S ribosomal protein S28 isoform 4 [Zea mays]
gi|474386341|gb|EMS64988.1| 40S ribosomal protein S28
[Triticum urartu] gi|475553296|gb|EMT11959.1| 40S
ribosomal protein S28 [Aegilops tauschii]
Length = 65
Score = 98.6 bits (244), Expect = 8e-19
Identities = 49/51 (96%), Positives = 50/51 (98%)
Frame = +2
Query: 5 MDSQAKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 157
MD+Q KLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 51
>gb|AAP80664.1|AF479045_1 S28 ribosomal protein, partial [Triticum aestivum]
Length = 86
Score = 98.6 bits (244), Expect = 8e-19
Identities = 49/51 (96%), Positives = 50/51 (98%)
Frame = +2
Query: 5 MDSQAKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 157
MD+Q KLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 22 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 72
>ref|XP_003575874.1| PREDICTED: uncharacterized protein LOC100831577 [Brachypodium
distachyon]
Length = 554
Score = 98.2 bits (243), Expect = 1e-18
Identities = 48/51 (94%), Positives = 50/51 (98%)
Frame = +2
Query: 5 MDSQAKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 157
MD+Q KLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGP+REGDI
Sbjct: 490 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPIREGDI 540
>ref|XP_003575873.1| PREDICTED: 40S ribosomal protein S28-like [Brachypodium distachyon]
Length = 115
Score = 98.2 bits (243), Expect = 1e-18
Identities = 48/51 (94%), Positives = 50/51 (98%)
Frame = +2
Query: 5 MDSQAKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 157
MD+Q KLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGP+REGDI
Sbjct: 51 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPIREGDI 101
>ref|XP_003574115.1| PREDICTED: 40S ribosomal protein S28-like [Brachypodium distachyon]
Length = 65
Score = 98.2 bits (243), Expect = 1e-18
Identities = 48/51 (94%), Positives = 50/51 (98%)
Frame = +2
Query: 5 MDSQAKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 157
MD+Q KLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGP+REGDI
Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPIREGDI 51
>emb|CAA04565.1| rpS28 [Hordeum vulgare subsp. vulgare]
Length = 65
Score = 95.9 bits (237), Expect = 5e-18
Identities = 48/51 (94%), Positives = 49/51 (96%)
Frame = +2
Query: 5 MDSQAKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 157
MD+Q KLAVVVKVMGRTGSRGQVTQVRVKFLD QNRLIMRNVKGPVREGDI
Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDHQNRLIMRNVKGPVREGDI 51
>ref|NP_001105548.1| 40S ribosomal protein S28 [Zea mays]
gi|1173237|sp|P46302.1|RS28_MAIZE RecName: Full=40S
ribosomal protein S28 gi|557682|emb|CAA57636.1| small
subunit ribosomal protein S28 [Zea mays]
Length = 65
Score = 95.5 bits (236), Expect = 6e-18
Identities = 48/51 (94%), Positives = 49/51 (96%)
Frame = +2
Query: 5 MDSQAKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 157
MD+Q KLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPV EGDI
Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDI 51
>ref|XP_006481678.1| PREDICTED: 40S ribosomal protein S28-like [Citrus sinensis]
Length = 65
Score = 95.1 bits (235), Expect = 8e-18
Identities = 48/51 (94%), Positives = 48/51 (94%)
Frame = +2
Query: 5 MDSQAKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 157
MDSQ K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPVREGDI
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 51
>ref|XP_006429965.1| hypothetical protein CICLE_v10013157mg [Citrus clementina]
gi|557532022|gb|ESR43205.1| hypothetical protein
CICLE_v10013157mg [Citrus clementina]
Length = 114
Score = 95.1 bits (235), Expect = 8e-18
Identities = 48/51 (94%), Positives = 48/51 (94%)
Frame = +2
Query: 5 MDSQAKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 157
MDSQ K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPVREGDI
Sbjct: 50 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 100
>gb|ACG26633.1| 40S ribosomal protein S28 [Zea mays]
Length = 65
Score = 95.1 bits (235), Expect = 8e-18
Identities = 47/51 (92%), Positives = 49/51 (96%)
Frame = +2
Query: 5 MDSQAKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 157
MD+Q KLAVVVKVMGRTGSRGQVTQV+VKFLDDQNRLIMRNV GPVREGDI
Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVKVKFLDDQNRLIMRNVXGPVREGDI 51
>gb|EOY09636.1| Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
Length = 65
Score = 94.7 bits (234), Expect = 1e-17
Identities = 48/51 (94%), Positives = 48/51 (94%)
Frame = +2
Query: 5 MDSQAKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 157
MDSQ K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPVREGDI
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDI 51
>ref|XP_002520788.1| ribosomal protein S28, putative [Ricinus communis]
gi|255581574|ref|XP_002531592.1| ribosomal protein S28,
putative [Ricinus communis] gi|223528788|gb|EEF30795.1|
ribosomal protein S28, putative [Ricinus communis]
gi|223539919|gb|EEF41497.1| ribosomal protein S28,
putative [Ricinus communis] gi|313586485|gb|ADR71253.1|
40S ribosomal protein S28A [Hevea brasiliensis]
gi|313586487|gb|ADR71254.1| 40S ribosomal protein S28B
[Hevea brasiliensis]
Length = 65
Score = 94.7 bits (234), Expect = 1e-17
Identities = 47/51 (92%), Positives = 48/51 (94%)
Frame = +2
Query: 5 MDSQAKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 157
MDSQ K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPVREGD+
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDV 51