BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00008400
         (1117 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-lik...   393   e-107
emb|CBI26421.3| unnamed protein product [Vitis vinifera]              393   e-107
ref|XP_006878659.1| hypothetical protein AMTR_s00011p00266100 [A...   387   e-105
gb|EOY10268.1| Sigma factor A isoform 1 [Theobroma cacao]             383   e-104
gb|EMJ20222.1| hypothetical protein PRUPE_ppa004393mg [Prunus pe...   378   e-102
ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protei...   378   e-102
dbj|BAA88922.1| sigma factor [Nicotiana tabacum]                      376   e-101
ref|XP_004241445.1| PREDICTED: RNA polymerase sigma factor sigA-...   375   e-101
ref|XP_002319237.2| hypothetical protein POPTR_0013s07290g [Popu...   375   e-101
ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor sigA-...   375   e-101
ref|XP_006419162.1| hypothetical protein EUTSA_v10002486mg [Eutr...   374   e-101
ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-...   374   e-101
ref|XP_006347341.1| PREDICTED: RNA polymerase sigma factor sigA-...   373   e-101
ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...   373   e-101
ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citr...   372   e-100
dbj|BAA88921.1| sigma factor [Nicotiana tabacum]                      372   e-100
ref|XP_006302143.1| hypothetical protein CARUB_v10020145mg [Caps...   370   e-100
ref|XP_002886771.1| RNA polymerase sigma subunit 1 [Arabidopsis ...   370   e-100
ref|XP_004307835.1| PREDICTED: RNA polymerase sigma factor sigA-...   370   e-100
ref|NP_176666.1| RNA polymerase sigma subunit 1 [Arabidopsis tha...   368   2e-99

>ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-like isoform 2 [Vitis
            vinifera]
          Length = 497

 Score =  393 bits (1010), Expect = e-107
 Identities = 191/291 (65%), Positives = 241/291 (82%)
 Frame = +1

Query: 4    KIEAGIQMEEHRLKLKEKLRSEPSDKQLASSLRMSCAELHRKMIECSLATEKLAMSNLRL 183
            KI+AG+ +E+H+ +LKE++ SEP+D+Q+A+SLRMS AEL  K+IECSLA EKLAMSN+RL
Sbjct: 206  KIKAGLLLEDHKSRLKERIGSEPTDEQVAASLRMSRAELQSKLIECSLAREKLAMSNVRL 265

Query: 184  VMSVAQKYDNLGVDMADXXXXXXXXXXXXXXKFDSSKGFRISTYVYWWIRQGVSRALIKN 363
            VMS+AQ+YDN+G +MAD              KFDSSKGF+ISTYVYWWIRQGVSRAL++N
Sbjct: 266  VMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEN 325

Query: 364  SRTLRLPAHLHERLISIRQAKVKLEDQGITPSIMKLAESLNMSQKKVRNATQAEIKVLSL 543
            SRTLRLP+HLHERL  IR AK++LE++GITPSI ++AE LNMSQKKVRNAT+A  KV SL
Sbjct: 326  SRTLRLPSHLHERLSLIRNAKIRLEEKGITPSIDRIAECLNMSQKKVRNATEAISKVFSL 385

Query: 544  DREAFPYSNGLPGETLHDYIADSKVENTPWHVFEEWSLKDEVTQLLYTILSKRDRNIIKL 723
            DREAFP  NGLPGETLH YIAD ++EN PWH  +EW+LKDEV +L+ T L +R+R+II+L
Sbjct: 386  DREAFPSLNGLPGETLHSYIADVRLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRL 445

Query: 724  YHGIDNNCHTWEDIGKQLGLSRERVRKLGLEAMEKLKLAARSRRLGSLFIK 876
            Y+G+DN C TWEDI K++GLSRERVR++GL A+EKLK AAR  R+ ++ +K
Sbjct: 446  YYGLDNECLTWEDISKRIGLSRERVRQVGLVALEKLKNAARKGRMEAMLVK 496


>emb|CBI26421.3| unnamed protein product [Vitis vinifera]
          Length = 555

 Score =  393 bits (1010), Expect = e-107
 Identities = 191/291 (65%), Positives = 241/291 (82%)
 Frame = +1

Query: 4    KIEAGIQMEEHRLKLKEKLRSEPSDKQLASSLRMSCAELHRKMIECSLATEKLAMSNLRL 183
            KI+AG+ +E+H+ +LKE++ SEP+D+Q+A+SLRMS AEL  K+IECSLA EKLAMSN+RL
Sbjct: 264  KIKAGLLLEDHKSRLKERIGSEPTDEQVAASLRMSRAELQSKLIECSLAREKLAMSNVRL 323

Query: 184  VMSVAQKYDNLGVDMADXXXXXXXXXXXXXXKFDSSKGFRISTYVYWWIRQGVSRALIKN 363
            VMS+AQ+YDN+G +MAD              KFDSSKGF+ISTYVYWWIRQGVSRAL++N
Sbjct: 324  VMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEN 383

Query: 364  SRTLRLPAHLHERLISIRQAKVKLEDQGITPSIMKLAESLNMSQKKVRNATQAEIKVLSL 543
            SRTLRLP+HLHERL  IR AK++LE++GITPSI ++AE LNMSQKKVRNAT+A  KV SL
Sbjct: 384  SRTLRLPSHLHERLSLIRNAKIRLEEKGITPSIDRIAECLNMSQKKVRNATEAISKVFSL 443

Query: 544  DREAFPYSNGLPGETLHDYIADSKVENTPWHVFEEWSLKDEVTQLLYTILSKRDRNIIKL 723
            DREAFP  NGLPGETLH YIAD ++EN PWH  +EW+LKDEV +L+ T L +R+R+II+L
Sbjct: 444  DREAFPSLNGLPGETLHSYIADVRLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRL 503

Query: 724  YHGIDNNCHTWEDIGKQLGLSRERVRKLGLEAMEKLKLAARSRRLGSLFIK 876
            Y+G+DN C TWEDI K++GLSRERVR++GL A+EKLK AAR  R+ ++ +K
Sbjct: 504  YYGLDNECLTWEDISKRIGLSRERVRQVGLVALEKLKNAARKGRMEAMLVK 554


>ref|XP_006878659.1| hypothetical protein AMTR_s00011p00266100 [Amborella trichopoda]
            gi|548832002|gb|ERM94804.1| hypothetical protein
            AMTR_s00011p00266100 [Amborella trichopoda]
          Length = 497

 Score =  387 bits (994), Expect = e-105
 Identities = 185/291 (63%), Positives = 240/291 (82%)
 Frame = +1

Query: 4    KIEAGIQMEEHRLKLKEKLRSEPSDKQLASSLRMSCAELHRKMIECSLATEKLAMSNLRL 183
            KI AG+ +EEH+ +LKEKL  +PSD+ LASSL++S +ELH K+IECSLA EKLAMSN+RL
Sbjct: 206  KIRAGLSLEEHKSRLKEKLGFDPSDELLASSLKISRSELHSKLIECSLAKEKLAMSNIRL 265

Query: 184  VMSVAQKYDNLGVDMADXXXXXXXXXXXXXXKFDSSKGFRISTYVYWWIRQGVSRALIKN 363
            VMS+AQKYDN+G++MAD              KFDSSKGF+ISTYVYWWIRQGVSRA+++N
Sbjct: 266  VMSIAQKYDNMGIEMADLIQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRAMVEN 325

Query: 364  SRTLRLPAHLHERLISIRQAKVKLEDQGITPSIMKLAESLNMSQKKVRNATQAEIKVLSL 543
            SRTLRLP HLHERL  IR AK++L++QG+TPSI ++A+SLNMS+KKV+NAT+A  KV SL
Sbjct: 326  SRTLRLPTHLHERLSLIRNAKIRLKEQGLTPSIHRIAKSLNMSKKKVKNATEAMTKVFSL 385

Query: 544  DREAFPYSNGLPGETLHDYIADSKVENTPWHVFEEWSLKDEVTQLLYTILSKRDRNIIKL 723
            DREAFP  NGLPGETLH YIAD+ + N PWH  +EW LK EV +L+ + L++R+++II+L
Sbjct: 386  DREAFPTLNGLPGETLHSYIADNNLMNNPWHGVDEWLLKAEVNKLISSTLAEREQDIIRL 445

Query: 724  YHGIDNNCHTWEDIGKQLGLSRERVRKLGLEAMEKLKLAARSRRLGSLFIK 876
            Y+G+D  CHTWEDI +++GLSRERVR++GL A+EKLK AAR++RL ++ +K
Sbjct: 446  YYGLDKECHTWEDISRKIGLSRERVRQVGLVALEKLKNAARNKRLEAMLVK 496


>gb|EOY10268.1| Sigma factor A isoform 1 [Theobroma cacao]
          Length = 508

 Score =  383 bits (984), Expect = e-104
 Identities = 187/291 (64%), Positives = 237/291 (81%)
 Frame = +1

Query: 4    KIEAGIQMEEHRLKLKEKLRSEPSDKQLASSLRMSCAELHRKMIECSLATEKLAMSNLRL 183
            KI+AG+ +EEHRL+LKE+L  EPSD+QLA+SL++S AEL  K+IECSLA EKLAMSN+RL
Sbjct: 217  KIKAGLSLEEHRLRLKERLGCEPSDEQLATSLKISRAELRSKLIECSLAREKLAMSNVRL 276

Query: 184  VMSVAQKYDNLGVDMADXXXXXXXXXXXXXXKFDSSKGFRISTYVYWWIRQGVSRALIKN 363
            VMS+AQ+YDN+G +M+D              KFDSSKG++ISTYVYWWIRQGVSRAL++N
Sbjct: 277  VMSIAQRYDNMGAEMSDLIQGGLIGLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALVEN 336

Query: 364  SRTLRLPAHLHERLISIRQAKVKLEDQGITPSIMKLAESLNMSQKKVRNATQAEIKVLSL 543
            SRTLRLP HLHERL  IR AK++LE++GITP+I ++AESLNMSQKKVRNAT+A  KV SL
Sbjct: 337  SRTLRLPTHLHERLGLIRNAKIRLEEKGITPTIDRIAESLNMSQKKVRNATEAVSKVFSL 396

Query: 544  DREAFPYSNGLPGETLHDYIADSKVENTPWHVFEEWSLKDEVTQLLYTILSKRDRNIIKL 723
            DR+AFP  NGLPGET H YIAD+ VEN PWH  +EW+LKDEV +L+   L +R+R II+L
Sbjct: 397  DRDAFPSLNGLPGETHHSYIADNHVENIPWHGVDEWALKDEVNRLITITLGEREREIIRL 456

Query: 724  YHGIDNNCHTWEDIGKQLGLSRERVRKLGLEAMEKLKLAARSRRLGSLFIK 876
            Y+G+D    TWEDI K++GLSRERVR++GL A+EKLK AAR +++ ++ +K
Sbjct: 457  YYGLDKESLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAMLVK 507


>gb|EMJ20222.1| hypothetical protein PRUPE_ppa004393mg [Prunus persica]
          Length = 512

 Score =  378 bits (971), Expect = e-102
 Identities = 183/291 (62%), Positives = 237/291 (81%)
 Frame = +1

Query: 4    KIEAGIQMEEHRLKLKEKLRSEPSDKQLASSLRMSCAELHRKMIECSLATEKLAMSNLRL 183
            KI+ G+ +EEH+ +LKE+L  EPSD+QLA+SLR+S A+L  K+IEC LA EKLAMSN+RL
Sbjct: 221  KIKVGLSVEEHKSRLKERLGCEPSDEQLATSLRISRAQLQSKLIECKLAREKLAMSNVRL 280

Query: 184  VMSVAQKYDNLGVDMADXXXXXXXXXXXXXXKFDSSKGFRISTYVYWWIRQGVSRALIKN 363
            VMS+AQ+YDN+G +MAD              KFDSSKGF+ISTYVYWWIRQGVSRAL++N
Sbjct: 281  VMSIAQRYDNMGAEMADLIQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEN 340

Query: 364  SRTLRLPAHLHERLISIRQAKVKLEDQGITPSIMKLAESLNMSQKKVRNATQAEIKVLSL 543
            SRTLRLP HLHERL  IR AK++LE++GITPSI ++AESLNMS+KKVRNAT+A  KV SL
Sbjct: 341  SRTLRLPTHLHERLGLIRNAKIRLEEKGITPSIDRIAESLNMSKKKVRNATEAISKVFSL 400

Query: 544  DREAFPYSNGLPGETLHDYIADSKVENTPWHVFEEWSLKDEVTQLLYTILSKRDRNIIKL 723
            DR+AFP  NGLPGET H YIAD+++EN PWH  + W+LK+EV++L+  +L +R++ II+L
Sbjct: 401  DRDAFPSLNGLPGETHHSYIADNRLENIPWHGVDAWALKEEVSKLINMMLGEREKEIIQL 460

Query: 724  YHGIDNNCHTWEDIGKQLGLSRERVRKLGLEAMEKLKLAARSRRLGSLFIK 876
            Y+G++N C TWEDI K++GLSRERVR++GL A+EKLK AAR R + ++ +K
Sbjct: 461  YYGLENECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEAMLLK 511


>ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protein [Populus trichocarpa]
            gi|222862757|gb|EEF00264.1| RNA POLYMERASE SIGMA SUBUNIT
            1 family protein [Populus trichocarpa]
          Length = 509

 Score =  378 bits (970), Expect = e-102
 Identities = 184/290 (63%), Positives = 231/290 (79%)
 Frame = +1

Query: 7    IEAGIQMEEHRLKLKEKLRSEPSDKQLASSLRMSCAELHRKMIECSLATEKLAMSNLRLV 186
            I AG+  E+H+ +LKE+L  EPSD+Q+A SLR+S A+L  K+I+CSLA EKLAMSN+RLV
Sbjct: 219  IRAGLSFEDHKSRLKERLGCEPSDEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLV 278

Query: 187  MSVAQKYDNLGVDMADXXXXXXXXXXXXXXKFDSSKGFRISTYVYWWIRQGVSRALIKNS 366
            MS+AQKYDN+G +MAD              KFDSSKGF+ISTYVYWWIRQGVSRAL+ NS
Sbjct: 279  MSIAQKYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNS 338

Query: 367  RTLRLPAHLHERLISIRQAKVKLEDQGITPSIMKLAESLNMSQKKVRNATQAEIKVLSLD 546
            RTLRLP HLHERL  IR AK++LE++G+TPSI ++AESLNMSQ+KVRNAT+A  KV SLD
Sbjct: 339  RTLRLPNHLHERLGLIRNAKIRLEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLD 398

Query: 547  REAFPYSNGLPGETLHDYIADSKVENTPWHVFEEWSLKDEVTQLLYTILSKRDRNIIKLY 726
            REAFP  NGLPGET H YIAD++ EN PWH  +EW+LK+EV +L+ + L +R++ II+LY
Sbjct: 399  REAFPSLNGLPGETHHSYIADNRPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLY 458

Query: 727  HGIDNNCHTWEDIGKQLGLSRERVRKLGLEAMEKLKLAARSRRLGSLFIK 876
            HG+D  C TWEDI K++GLSRERVR++GL A+EKLK AAR R   ++ +K
Sbjct: 459  HGLDQECLTWEDISKRMGLSRERVRQVGLVALEKLKHAARKRNTEAMLVK 508


>dbj|BAA88922.1| sigma factor [Nicotiana tabacum]
          Length = 502

 Score =  376 bits (965), Expect = e-101
 Identities = 185/291 (63%), Positives = 229/291 (78%)
 Frame = +1

Query: 4    KIEAGIQMEEHRLKLKEKLRSEPSDKQLASSLRMSCAELHRKMIECSLATEKLAMSNLRL 183
            KI+ G+ +EE + +LKE+L  EPSD QLA SL++S A+L   +IECSLA EKLAMSN+RL
Sbjct: 211  KIKFGLYLEEQKSRLKERLGCEPSDDQLAISLKISRADLRSTLIECSLAREKLAMSNVRL 270

Query: 184  VMSVAQKYDNLGVDMADXXXXXXXXXXXXXXKFDSSKGFRISTYVYWWIRQGVSRALIKN 363
            VMS+AQ+YD  G +MAD              KFD S+GF+ISTYVYWWIRQGVSRAL++N
Sbjct: 271  VMSIAQRYDTNGTEMADLIQGGLIGLLRGIEKFDHSRGFKISTYVYWWIRQGVSRALVEN 330

Query: 364  SRTLRLPAHLHERLISIRQAKVKLEDQGITPSIMKLAESLNMSQKKVRNATQAEIKVLSL 543
            SRTLRLP HLHERL  IR AK+KL++ GITPSI K+AE LNMSQKKVRNAT+A  KV SL
Sbjct: 331  SRTLRLPIHLHERLSLIRNAKIKLKENGITPSIEKIAECLNMSQKKVRNATEASSKVFSL 390

Query: 544  DREAFPYSNGLPGETLHDYIADSKVENTPWHVFEEWSLKDEVTQLLYTILSKRDRNIIKL 723
            DREAFP  NGLPGETLH YIAD+++EN PWH  +EW LKDEV  L+ + L +R+R I++L
Sbjct: 391  DREAFPSLNGLPGETLHSYIADNRLENIPWHGVDEWMLKDEVNNLISSTLREREREIVRL 450

Query: 724  YHGIDNNCHTWEDIGKQLGLSRERVRKLGLEAMEKLKLAARSRRLGSLFIK 876
            Y+G+DN C TWEDI +++GLSRERVR++GL A+EKLK AAR RRL ++ +K
Sbjct: 451  YYGLDNECLTWEDISRRIGLSRERVRQVGLVALEKLKHAARKRRLDAMLVK 501


>ref|XP_004241445.1| PREDICTED: RNA polymerase sigma factor sigA-like [Solanum
            lycopersicum]
          Length = 505

 Score =  375 bits (963), Expect = e-101
 Identities = 184/291 (63%), Positives = 230/291 (79%)
 Frame = +1

Query: 4    KIEAGIQMEEHRLKLKEKLRSEPSDKQLASSLRMSCAELHRKMIECSLATEKLAMSNLRL 183
            KI+ G+ +EE +  LKE+L  EPSD QLA SL+MS A+L   ++ECSLA EKLAMSN+RL
Sbjct: 214  KIKFGLYLEEQKASLKERLGCEPSDDQLAVSLKMSLADLRSTLMECSLAREKLAMSNVRL 273

Query: 184  VMSVAQKYDNLGVDMADXXXXXXXXXXXXXXKFDSSKGFRISTYVYWWIRQGVSRALIKN 363
            VMS+AQ+YD++G +MAD              KFD S+GF+ISTYVYWWIRQGVSRAL+ N
Sbjct: 274  VMSIAQRYDSMGTEMADLIQGGLIGLLRGIEKFDHSRGFKISTYVYWWIRQGVSRALVDN 333

Query: 364  SRTLRLPAHLHERLISIRQAKVKLEDQGITPSIMKLAESLNMSQKKVRNATQAEIKVLSL 543
            SRTLRLP HLHERL  IR AKVKL+D GITPSI K+AE LNMSQKKVRNAT+A  KV SL
Sbjct: 334  SRTLRLPIHLHERLSLIRNAKVKLKDSGITPSIEKIAECLNMSQKKVRNATEASSKVFSL 393

Query: 544  DREAFPYSNGLPGETLHDYIADSKVENTPWHVFEEWSLKDEVTQLLYTILSKRDRNIIKL 723
            DREA+P  NGLPG TLH YIAD+++EN PWH  + W+LKDEV  L+ +IL +R+R+II+L
Sbjct: 394  DREAYPSLNGLPGATLHSYIADNRLENNPWHGVDGWALKDEVNNLISSILRERERDIIRL 453

Query: 724  YHGIDNNCHTWEDIGKQLGLSRERVRKLGLEAMEKLKLAARSRRLGSLFIK 876
            Y+G+DN C TWEDI +++GLSRERVR++GL A+EKLK AAR ++L ++ +K
Sbjct: 454  YYGLDNECLTWEDISRRIGLSRERVRQVGLVALEKLKHAARKKQLDAMLVK 504


>ref|XP_002319237.2| hypothetical protein POPTR_0013s07290g [Populus trichocarpa]
            gi|550325184|gb|EEE95160.2| hypothetical protein
            POPTR_0013s07290g [Populus trichocarpa]
          Length = 499

 Score =  375 bits (962), Expect = e-101
 Identities = 183/290 (63%), Positives = 232/290 (80%)
 Frame = +1

Query: 7    IEAGIQMEEHRLKLKEKLRSEPSDKQLASSLRMSCAELHRKMIECSLATEKLAMSNLRLV 186
            I AG+ +E+H+  LKE+L  EPSD+QLA SLR+S A+L  ++I+CSLA EKLAMSN+RLV
Sbjct: 209  IRAGLSLEDHKSSLKERLGCEPSDEQLADSLRISRADLQSQLIQCSLAREKLAMSNVRLV 268

Query: 187  MSVAQKYDNLGVDMADXXXXXXXXXXXXXXKFDSSKGFRISTYVYWWIRQGVSRALIKNS 366
            MS+AQK DN+G +MAD              KFDSSKGF+ISTYVYWWIRQGVSRAL++N 
Sbjct: 269  MSIAQKNDNMGAEMADLVQAGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENP 328

Query: 367  RTLRLPAHLHERLISIRQAKVKLEDQGITPSIMKLAESLNMSQKKVRNATQAEIKVLSLD 546
            RTLRLP HLHERL  IR AK++LE++G+TPSI ++AESLNMSQ+KVRNAT+A  KV SLD
Sbjct: 329  RTLRLPNHLHERLGLIRNAKIRLEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLD 388

Query: 547  REAFPYSNGLPGETLHDYIADSKVENTPWHVFEEWSLKDEVTQLLYTILSKRDRNIIKLY 726
            REAFP  NGLPGET H YIAD+++EN PWH  +EW+LK+EV +L+ + L +R+R II+LY
Sbjct: 389  REAFPSLNGLPGETHHSYIADNRLENNPWHGVDEWALKEEVNKLIDSALQEREREIIRLY 448

Query: 727  HGIDNNCHTWEDIGKQLGLSRERVRKLGLEAMEKLKLAARSRRLGSLFIK 876
            HG+D  C TWEDI K++GLSRERVR++GL A+EKLK AAR  +L ++ +K
Sbjct: 449  HGLDKECLTWEDISKRMGLSRERVRQVGLVALEKLKHAARKGKLEAMLVK 498


>ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor sigA-like [Glycine max]
          Length = 503

 Score =  375 bits (962), Expect = e-101
 Identities = 184/291 (63%), Positives = 233/291 (80%)
 Frame = +1

Query: 4    KIEAGIQMEEHRLKLKEKLRSEPSDKQLASSLRMSCAELHRKMIECSLATEKLAMSNLRL 183
            KI+ G+ +EEH+ +LKEKL  EPSD Q+A+SL++S  EL  +MIECSLA EKLAMSN+RL
Sbjct: 212  KIKVGLSLEEHKSRLKEKLGCEPSDDQMATSLKISRTELRARMIECSLAREKLAMSNVRL 271

Query: 184  VMSVAQKYDNLGVDMADXXXXXXXXXXXXXXKFDSSKGFRISTYVYWWIRQGVSRALIKN 363
            VMS+AQKYDNLG +M D              KFDSSKGF+ISTYVYWWIRQGVSRAL++N
Sbjct: 272  VMSIAQKYDNLGAEMGDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEN 331

Query: 364  SRTLRLPAHLHERLISIRQAKVKLEDQGITPSIMKLAESLNMSQKKVRNATQAEIKVLSL 543
            SRTLRLPAHLHERL  IR AK +LE++GITP+I ++A+ LNMSQKKVRNAT+A  K++SL
Sbjct: 332  SRTLRLPAHLHERLSLIRNAKFRLEERGITPTIDRIAKYLNMSQKKVRNATEAISKIISL 391

Query: 544  DREAFPYSNGLPGETLHDYIADSKVENTPWHVFEEWSLKDEVTQLLYTILSKRDRNIIKL 723
            DREAFP  NGL GET H YIAD++VEN PW+  +EW+LKDEV +L+   L +R+R II+L
Sbjct: 392  DREAFPSLNGLQGETHHSYIADNRVENIPWNGVDEWALKDEVNRLINVTLVEREREIIRL 451

Query: 724  YHGIDNNCHTWEDIGKQLGLSRERVRKLGLEAMEKLKLAARSRRLGSLFIK 876
            Y+G++  C TWEDI K++GLSRERVR++GL A+EKLK AAR R++ ++ +K
Sbjct: 452  YYGLEKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRQMEAMLLK 502


>ref|XP_006419162.1| hypothetical protein EUTSA_v10002486mg [Eutrema salsugineum]
            gi|557097090|gb|ESQ37598.1| hypothetical protein
            EUTSA_v10002486mg [Eutrema salsugineum]
          Length = 519

 Score =  374 bits (961), Expect = e-101
 Identities = 179/291 (61%), Positives = 236/291 (81%)
 Frame = +1

Query: 4    KIEAGIQMEEHRLKLKEKLRSEPSDKQLASSLRMSCAELHRKMIECSLATEKLAMSNLRL 183
            KI++G+++++H+ +LK++L  EPSD+QLA SL++S  EL   ++EC LA EKLAMSN+RL
Sbjct: 228  KIKSGLRLDDHKSRLKDRLGCEPSDEQLAISLKISRGELQAWLMECHLAREKLAMSNVRL 287

Query: 184  VMSVAQKYDNLGVDMADXXXXXXXXXXXXXXKFDSSKGFRISTYVYWWIRQGVSRALIKN 363
            VMS+AQ+YDN+G +M+D              KFDSSKGFRISTYVYWWIRQGVSRAL+ N
Sbjct: 288  VMSIAQRYDNMGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDN 347

Query: 364  SRTLRLPAHLHERLISIRQAKVKLEDQGITPSIMKLAESLNMSQKKVRNATQAEIKVLSL 543
            SRTLRLP HLHERL  IR AK++L+++GITPSI ++AESLNMSQKKVRNAT+A  K+ SL
Sbjct: 348  SRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKIFSL 407

Query: 544  DREAFPYSNGLPGETLHDYIADSKVENTPWHVFEEWSLKDEVTQLLYTILSKRDRNIIKL 723
            DR+AFP  NGLPGET H YIAD+++EN PWH ++EW+LKDEV++L+   L +R+R II+L
Sbjct: 408  DRDAFPSLNGLPGETHHSYIADNRLENNPWHGYDEWALKDEVSKLISATLGEREREIIRL 467

Query: 724  YHGIDNNCHTWEDIGKQLGLSRERVRKLGLEAMEKLKLAARSRRLGSLFIK 876
            Y+G+D  C TWEDI K++GLSRERVR++GL A+EKLK AAR R++ ++ +K
Sbjct: 468  YYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILK 518


>ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Citrus
            sinensis] gi|568862456|ref|XP_006484699.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X2 [Citrus
            sinensis] gi|568862458|ref|XP_006484700.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X3 [Citrus
            sinensis]
          Length = 508

 Score =  374 bits (959), Expect = e-101
 Identities = 181/291 (62%), Positives = 233/291 (80%)
 Frame = +1

Query: 4    KIEAGIQMEEHRLKLKEKLRSEPSDKQLASSLRMSCAELHRKMIECSLATEKLAMSNLRL 183
            KI+ G+ +++H+L+LKE+L  EPS +QLA+SLR+S  EL   ++ECSLA EKL MSN+RL
Sbjct: 217  KIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRL 276

Query: 184  VMSVAQKYDNLGVDMADXXXXXXXXXXXXXXKFDSSKGFRISTYVYWWIRQGVSRALIKN 363
            VMS+AQ+YDN+G DMAD              KFDSSKGF+ISTYVYWWIRQGVSRAL++N
Sbjct: 277  VMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEN 336

Query: 364  SRTLRLPAHLHERLISIRQAKVKLEDQGITPSIMKLAESLNMSQKKVRNATQAEIKVLSL 543
            SRTLRLP HLHERL  IR AK++LE++G+TPS+ ++AE LNMSQKKVRNAT+A  KV SL
Sbjct: 337  SRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSL 396

Query: 544  DREAFPYSNGLPGETLHDYIADSKVENTPWHVFEEWSLKDEVTQLLYTILSKRDRNIIKL 723
            DREAFP  NGLPGET H YIAD++VEN PWH  ++W+LKDEV +L+   L +R+R II+L
Sbjct: 397  DREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRL 456

Query: 724  YHGIDNNCHTWEDIGKQLGLSRERVRKLGLEAMEKLKLAARSRRLGSLFIK 876
            Y+G+D  C TWEDI K++GLSRERVR++GL A+EKLK AAR +++ ++ +K
Sbjct: 457  YYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAMLVK 507


>ref|XP_006347341.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Solanum
            tuberosum] gi|565361192|ref|XP_006347342.1| PREDICTED:
            RNA polymerase sigma factor sigA-like isoform X2 [Solanum
            tuberosum]
          Length = 505

 Score =  373 bits (957), Expect = e-101
 Identities = 182/291 (62%), Positives = 229/291 (78%)
 Frame = +1

Query: 4    KIEAGIQMEEHRLKLKEKLRSEPSDKQLASSLRMSCAELHRKMIECSLATEKLAMSNLRL 183
            KI+ G+ +EE +  LKE+L  EPSD QLA SL+MS A+L   ++ECSLA EKLAMSN+RL
Sbjct: 214  KIKFGLYLEEQKASLKERLGCEPSDDQLAVSLKMSLADLRSTLMECSLAREKLAMSNVRL 273

Query: 184  VMSVAQKYDNLGVDMADXXXXXXXXXXXXXXKFDSSKGFRISTYVYWWIRQGVSRALIKN 363
            VMS+AQ+YD++G +MAD              KFD S+GF+ISTYVYWWIRQGVSRAL+ N
Sbjct: 274  VMSIAQRYDSMGTEMADLIQGGLIGLLRGIEKFDHSRGFKISTYVYWWIRQGVSRALVDN 333

Query: 364  SRTLRLPAHLHERLISIRQAKVKLEDQGITPSIMKLAESLNMSQKKVRNATQAEIKVLSL 543
            SRTLRLP HLHERL  IR AKVKL+D GITPSI K+AE LNMSQKKVRNAT+A  KV SL
Sbjct: 334  SRTLRLPIHLHERLSLIRNAKVKLKDNGITPSIEKIAECLNMSQKKVRNATEASSKVFSL 393

Query: 544  DREAFPYSNGLPGETLHDYIADSKVENTPWHVFEEWSLKDEVTQLLYTILSKRDRNIIKL 723
            DREA+P  NGLPG TLH YIAD+++EN PWH  + W+LKDEV  L+ + L +R+R+I++L
Sbjct: 394  DREAYPSLNGLPGATLHSYIADNRLENNPWHGVDGWALKDEVNNLISSTLRERERDIVRL 453

Query: 724  YHGIDNNCHTWEDIGKQLGLSRERVRKLGLEAMEKLKLAARSRRLGSLFIK 876
            Y+G+DN C TWEDI +++GLSRERVR++GL A+EKLK AAR ++L ++ +K
Sbjct: 454  YYGLDNECLTWEDISRRIGLSRERVRQVGLVALEKLKHAARKKQLDAMLVK 504


>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 508

 Score =  373 bits (957), Expect = e-101
 Identities = 182/290 (62%), Positives = 234/290 (80%)
 Frame = +1

Query: 7    IEAGIQMEEHRLKLKEKLRSEPSDKQLASSLRMSCAELHRKMIECSLATEKLAMSNLRLV 186
            I+AG+ +E+H+ +LKE+L  +PSD+Q+A+SL++S AEL  K I CSLA EKLAMSN+RLV
Sbjct: 218  IKAGLSLEDHKSRLKERLGCDPSDEQVATSLKISRAELQSKSIACSLAREKLAMSNVRLV 277

Query: 187  MSVAQKYDNLGVDMADXXXXXXXXXXXXXXKFDSSKGFRISTYVYWWIRQGVSRALIKNS 366
            MS+AQ+YDN+G +MAD              KFDSSKGFRISTYVYWWIRQGVSRAL++NS
Sbjct: 278  MSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENS 337

Query: 367  RTLRLPAHLHERLISIRQAKVKLEDQGITPSIMKLAESLNMSQKKVRNATQAEIKVLSLD 546
            RTLRLP HLHERL  IR AK++LE++G+TPSI ++AESLN+SQKKVRNAT+A  KV SLD
Sbjct: 338  RTLRLPNHLHERLGLIRNAKIRLEEKGVTPSIDRIAESLNISQKKVRNATEAVSKVFSLD 397

Query: 547  REAFPYSNGLPGETLHDYIADSKVENTPWHVFEEWSLKDEVTQLLYTILSKRDRNIIKLY 726
            REAFP  NGLPGET H YIAD+ +EN PWH  ++W+LKDEV +L+   L +R++ II+LY
Sbjct: 398  REAFPSLNGLPGETHHSYIADNCLENNPWHGVDDWALKDEVNKLINLTLQEREQEIIRLY 457

Query: 727  HGIDNNCHTWEDIGKQLGLSRERVRKLGLEAMEKLKLAARSRRLGSLFIK 876
            +G+DN   TWEDI K++GLSRERVR++GL A+EKLK AAR ++L ++ +K
Sbjct: 458  YGLDNESLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKLEAMLVK 507


>ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citrus clementina]
            gi|557539599|gb|ESR50643.1| hypothetical protein
            CICLE_v10031289mg [Citrus clementina]
          Length = 508

 Score =  372 bits (956), Expect = e-100
 Identities = 180/291 (61%), Positives = 233/291 (80%)
 Frame = +1

Query: 4    KIEAGIQMEEHRLKLKEKLRSEPSDKQLASSLRMSCAELHRKMIECSLATEKLAMSNLRL 183
            KI+ G+ +++H+L+LKE+L  EPS +QLA+SLR+S  EL   ++ECSLA EKL MSN+RL
Sbjct: 217  KIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRL 276

Query: 184  VMSVAQKYDNLGVDMADXXXXXXXXXXXXXXKFDSSKGFRISTYVYWWIRQGVSRALIKN 363
            VMS+AQ+YDN+G DMAD              KFDSSKGF+ISTYVYWWIRQGVSRAL++N
Sbjct: 277  VMSIAQRYDNMGADMADLIQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEN 336

Query: 364  SRTLRLPAHLHERLISIRQAKVKLEDQGITPSIMKLAESLNMSQKKVRNATQAEIKVLSL 543
            SRTLRLP HLHERL  IR AK++LE++G+TP++ ++AE LNMSQKKVRNAT+A  KV SL
Sbjct: 337  SRTLRLPNHLHERLGLIRNAKLRLEEKGVTPAVDRIAEYLNMSQKKVRNATEAIGKVFSL 396

Query: 544  DREAFPYSNGLPGETLHDYIADSKVENTPWHVFEEWSLKDEVTQLLYTILSKRDRNIIKL 723
            DREAFP  NGLPGET H YIAD++VEN PWH  ++W+LKDEV +L+   L +R+R II+L
Sbjct: 397  DREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRL 456

Query: 724  YHGIDNNCHTWEDIGKQLGLSRERVRKLGLEAMEKLKLAARSRRLGSLFIK 876
            Y+G+D  C TWEDI K++GLSRERVR++GL A+EKLK AAR +++ ++ +K
Sbjct: 457  YYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAMLVK 507


>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
          Length = 508

 Score =  372 bits (955), Expect = e-100
 Identities = 183/292 (62%), Positives = 228/292 (78%)
 Frame = +1

Query: 4    KIEAGIQMEEHRLKLKEKLRSEPSDKQLASSLRMSCAELHRKMIECSLATEKLAMSNLRL 183
            KI+ G+ +EE + +LKE+L  EPSD QLA SL+MS  +L   +IECSLA E+LAMSN+RL
Sbjct: 217  KIQVGLYLEEQKSRLKERLGCEPSDDQLAVSLKMSRTDLQSTLIECSLARERLAMSNVRL 276

Query: 184  VMSVAQKYDNLGVDMADXXXXXXXXXXXXXXKFDSSKGFRISTYVYWWIRQGVSRALIKN 363
            VMS+AQ+YDN+G +MAD              KFD SKG++ISTYVYWWIRQGVSRAL++N
Sbjct: 277  VMSIAQRYDNVGAEMADLVQGGLIGLLRGIEKFDPSKGYKISTYVYWWIRQGVSRALVEN 336

Query: 364  SRTLRLPAHLHERLISIRQAKVKLEDQGITPSIMKLAESLNMSQKKVRNATQAEIKVLSL 543
            SRTLRLP +LHERL  IR AK +LE++GITPS+  +A SLNMSQKKVRNAT+A  K+ SL
Sbjct: 337  SRTLRLPTYLHERLSLIRNAKARLEEKGITPSVNNIAASLNMSQKKVRNATEASSKMYSL 396

Query: 544  DREAFPYSNGLPGETLHDYIADSKVENTPWHVFEEWSLKDEVTQLLYTILSKRDRNIIKL 723
            DREAFP  NGLPGETLH YIAD+ +EN PWH  + W+LKDEV  L+ + L  R+R II+L
Sbjct: 397  DREAFPSLNGLPGETLHSYIADNHLENNPWHGVDVWALKDEVNNLISSTLRDREREIIRL 456

Query: 724  YHGIDNNCHTWEDIGKQLGLSRERVRKLGLEAMEKLKLAARSRRLGSLFIKQ 879
            Y+G+DN C TWEDI K++GLSRERVR++GL A+EKLK AAR R+L ++ IKQ
Sbjct: 457  YYGLDNECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRQLDAMLIKQ 508


>ref|XP_006302143.1| hypothetical protein CARUB_v10020145mg [Capsella rubella]
            gi|482570853|gb|EOA35041.1| hypothetical protein
            CARUB_v10020145mg [Capsella rubella]
          Length = 521

 Score =  370 bits (950), Expect = e-100
 Identities = 179/291 (61%), Positives = 236/291 (81%)
 Frame = +1

Query: 4    KIEAGIQMEEHRLKLKEKLRSEPSDKQLASSLRMSCAELHRKMIECSLATEKLAMSNLRL 183
            KI++G+++++H+ +LK++L  EPSD+QLA SL++S AEL   ++EC LA EKLAMSN+RL
Sbjct: 230  KIKSGLRLDDHKSRLKDRLGCEPSDEQLAISLKISRAELQAWLMECHLAREKLAMSNVRL 289

Query: 184  VMSVAQKYDNLGVDMADXXXXXXXXXXXXXXKFDSSKGFRISTYVYWWIRQGVSRALIKN 363
            VMS+AQ+YDNLG +M+D              KFDSSKGFRISTYVYWWIRQGVSRAL+ N
Sbjct: 290  VMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDN 349

Query: 364  SRTLRLPAHLHERLISIRQAKVKLEDQGITPSIMKLAESLNMSQKKVRNATQAEIKVLSL 543
            SRTLRLP HLHERL  IR AK++L+++GITPSI ++AESLNMSQKKVRNAT+A  K+ SL
Sbjct: 350  SRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKIFSL 409

Query: 544  DREAFPYSNGLPGETLHDYIADSKVENTPWHVFEEWSLKDEVTQLLYTILSKRDRNIIKL 723
            DR+AFP  NGLPGET H YIAD+++EN PWH ++E +LK+EV++L+   L +R+R II+L
Sbjct: 410  DRDAFPSLNGLPGETHHSYIADNRLENNPWHGYDELALKEEVSKLITATLGEREREIIRL 469

Query: 724  YHGIDNNCHTWEDIGKQLGLSRERVRKLGLEAMEKLKLAARSRRLGSLFIK 876
            Y+G+D  C TWEDI K++GLSRERVR++GL A+EKLK AAR R++ ++ +K
Sbjct: 470  YYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILK 520


>ref|XP_002886771.1| RNA polymerase sigma subunit 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297332612|gb|EFH63030.1| RNA polymerase sigma subunit
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 503

 Score =  370 bits (950), Expect = e-100
 Identities = 179/291 (61%), Positives = 236/291 (81%)
 Frame = +1

Query: 4    KIEAGIQMEEHRLKLKEKLRSEPSDKQLASSLRMSCAELHRKMIECSLATEKLAMSNLRL 183
            KI++G+++++H+ +LK++L  EPSD+QLA SL++S AEL   ++EC LA EKLAMSN+RL
Sbjct: 212  KIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRL 271

Query: 184  VMSVAQKYDNLGVDMADXXXXXXXXXXXXXXKFDSSKGFRISTYVYWWIRQGVSRALIKN 363
            VMS+AQ+YDNLG +M+D              KFDSSKGFRISTYVYWWIRQGVSRAL+ N
Sbjct: 272  VMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDN 331

Query: 364  SRTLRLPAHLHERLISIRQAKVKLEDQGITPSIMKLAESLNMSQKKVRNATQAEIKVLSL 543
            SRTLRLP HLHERL  IR AK++L+++GITPSI ++AESLNMSQKKVRNAT+A  K+ SL
Sbjct: 332  SRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKIFSL 391

Query: 544  DREAFPYSNGLPGETLHDYIADSKVENTPWHVFEEWSLKDEVTQLLYTILSKRDRNIIKL 723
            DR+AFP  NGLPGET H YIAD++VEN PWH +++ +LK+EV++L+   L +R+R II+L
Sbjct: 392  DRDAFPSLNGLPGETHHSYIADNRVENNPWHGYDDLALKEEVSKLISATLGEREREIIRL 451

Query: 724  YHGIDNNCHTWEDIGKQLGLSRERVRKLGLEAMEKLKLAARSRRLGSLFIK 876
            Y+G+D  C TWEDI K++GLSRERVR++GL A+EKLK AAR R++ ++ +K
Sbjct: 452  YYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILK 502


>ref|XP_004307835.1| PREDICTED: RNA polymerase sigma factor sigA-like [Fragaria vesca
            subsp. vesca]
          Length = 511

 Score =  370 bits (949), Expect = e-100
 Identities = 183/291 (62%), Positives = 231/291 (79%)
 Frame = +1

Query: 4    KIEAGIQMEEHRLKLKEKLRSEPSDKQLASSLRMSCAELHRKMIECSLATEKLAMSNLRL 183
            KI+ G+ +EEH+ +LKEKL  EPS +QLA+SLR+S  EL  K+I+CSLA EKL MSN+RL
Sbjct: 220  KIKIGLSVEEHKSRLKEKLGCEPSVEQLATSLRISRTELQSKLIQCSLAREKLTMSNVRL 279

Query: 184  VMSVAQKYDNLGVDMADXXXXXXXXXXXXXXKFDSSKGFRISTYVYWWIRQGVSRALIKN 363
            VMS+AQ+YDN+G +MAD              KFD+SKGF+ISTYVYWWIRQGVSRAL++N
Sbjct: 280  VMSIAQRYDNMGAEMADLIQGGLIGLLRGIEKFDASKGFKISTYVYWWIRQGVSRALVEN 339

Query: 364  SRTLRLPAHLHERLISIRQAKVKLEDQGITPSIMKLAESLNMSQKKVRNATQAEIKVLSL 543
            SRTLRLP HLHERL  IR AKV+LE++GITPSI  +AESLNMS+KKVRNAT+A  KV SL
Sbjct: 340  SRTLRLPTHLHERLGLIRNAKVRLEEKGITPSIDSIAESLNMSKKKVRNATEAISKVFSL 399

Query: 544  DREAFPYSNGLPGETLHDYIADSKVENTPWHVFEEWSLKDEVTQLLYTILSKRDRNIIKL 723
            DR+AFP  NGLPGET H YIAD++ EN PWH  +E +LKDEV +L+  +L +R+R II+L
Sbjct: 400  DRDAFPSLNGLPGETHHSYIADNRHENIPWHGLDELALKDEVNKLINLMLGEREREIIRL 459

Query: 724  YHGIDNNCHTWEDIGKQLGLSRERVRKLGLEAMEKLKLAARSRRLGSLFIK 876
            Y+G+DN C TWEDI K++GLSRERVR++GL A+EKLK  AR + L ++ ++
Sbjct: 460  YYGLDNECLTWEDISKRIGLSRERVRQVGLVALEKLKHGARKKELEAMLVQ 510


>ref|NP_176666.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
            gi|75098242|sp|O24629.1|SIGA_ARATH RecName: Full=RNA
            polymerase sigma factor sigA; Short=Sigma factor A;
            Short=Sigma-A; AltName: Full=RNA polymerase sigma factor
            sig1; Short=Atsig1; Short=Sigma factor 1; AltName:
            Full=RNA polymerase sigma factor sig2; Short=Atsig2;
            Short=Sigma factor 2; AltName: Full=RNA polymerase sigma
            factor sigB; Short=Sigma factor B; Short=Sigma-B; Flags:
            Precursor gi|5042421|gb|AAD38260.1|AC006193_16 RNA
            polymerase sigma subunit 1 [Arabidopsis thaliana]
            gi|2353171|gb|AAB69384.1| sigma factor 1 [Arabidopsis
            thaliana] gi|2443408|dbj|BAA22421.1| SigA [Arabidopsis
            thaliana] gi|2558514|emb|CAA74640.1| plastid RNA
            polymerase sigma factor [Arabidopsis thaliana]
            gi|5478439|dbj|BAA82448.1| sigma factor SigA [Arabidopsis
            thaliana] gi|17064900|gb|AAL32604.1| RNA polymerase sigma
            subunit 1 [Arabidopsis thaliana]
            gi|20259916|gb|AAM13305.1| RNA polymerase sigma subunit 1
            [Arabidopsis thaliana] gi|222423019|dbj|BAH19492.1|
            AT1G64860 [Arabidopsis thaliana]
            gi|332196177|gb|AEE34298.1| RNA polymerase sigma subunit
            1 [Arabidopsis thaliana]
          Length = 502

 Score =  368 bits (945), Expect = 2e-99
 Identities = 178/291 (61%), Positives = 236/291 (81%)
 Frame = +1

Query: 4    KIEAGIQMEEHRLKLKEKLRSEPSDKQLASSLRMSCAELHRKMIECSLATEKLAMSNLRL 183
            KI++G+++++H+ +LK++L  EPSD+QLA SL++S AEL   ++EC LA EKLAMSN+RL
Sbjct: 211  KIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRL 270

Query: 184  VMSVAQKYDNLGVDMADXXXXXXXXXXXXXXKFDSSKGFRISTYVYWWIRQGVSRALIKN 363
            VMS+AQ+YDNLG +M+D              KFDSSKGFRISTYVYWWIRQGVSRAL+ N
Sbjct: 271  VMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDN 330

Query: 364  SRTLRLPAHLHERLISIRQAKVKLEDQGITPSIMKLAESLNMSQKKVRNATQAEIKVLSL 543
            SRTLRLP HLHERL  IR AK++L+++GITPSI ++AESLNMSQKKVRNAT+A  KV SL
Sbjct: 331  SRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSL 390

Query: 544  DREAFPYSNGLPGETLHDYIADSKVENTPWHVFEEWSLKDEVTQLLYTILSKRDRNIIKL 723
            DR+AFP  NGLPGET H YIAD+++EN PWH +++ +LK+EV++L+   L +R++ II+L
Sbjct: 391  DRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRL 450

Query: 724  YHGIDNNCHTWEDIGKQLGLSRERVRKLGLEAMEKLKLAARSRRLGSLFIK 876
            Y+G+D  C TWEDI K++GLSRERVR++GL A+EKLK AAR R++ ++ +K
Sbjct: 451  YYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILK 501