BLASTX nr result
ID: Zingiber23_contig00008267
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00008267
(869 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006649858.1| PREDICTED: glycine-rich RNA-binding protein ... 117 4e-24
ref|XP_003575643.1| PREDICTED: glycine-rich RNA-binding protein ... 116 1e-23
ref|XP_002284323.1| PREDICTED: cold-inducible RNA-binding protei... 112 2e-22
ref|NP_001169115.1| uncharacterized protein LOC100382959 [Zea ma... 112 2e-22
ref|XP_002461004.1| hypothetical protein SORBIDRAFT_02g039025 [S... 111 3e-22
ref|XP_004159670.1| PREDICTED: cold-inducible RNA-binding protei... 111 4e-22
ref|XP_004981486.1| PREDICTED: glycine-rich RNA-binding protein ... 110 7e-22
ref|XP_006292104.1| hypothetical protein CARUB_v10018300mg [Caps... 110 7e-22
ref|XP_004135289.1| PREDICTED: cold-inducible RNA-binding protei... 108 2e-21
ref|XP_002877450.1| hypothetical protein ARALYDRAFT_905782 [Arab... 108 2e-21
ref|NP_190188.1| RNA recognition motif-containing protein [Arabi... 108 3e-21
ref|XP_006848599.1| hypothetical protein AMTR_s00168p00066520 [A... 106 1e-20
gb|EXC35053.1| Cold-inducible RNA-binding protein [Morus notabilis] 105 2e-20
ref|XP_002533105.1| cold-inducible RNA binding protein, putative... 103 1e-19
ref|XP_003597341.1| Cold-inducible RNA-binding protein [Medicago... 101 4e-19
ref|XP_006279867.1| hypothetical protein CARUB_v10028559mg [Caps... 100 5e-19
ref|XP_002864655.1| predicted protein [Arabidopsis lyrata subsp.... 100 5e-19
ref|XP_006363377.1| PREDICTED: cold-inducible RNA-binding protei... 99 2e-18
ref|XP_004294595.1| PREDICTED: polyadenylate-binding protein, cy... 99 2e-18
ref|XP_006424765.1| hypothetical protein CICLE_v10029673mg [Citr... 99 3e-18
>ref|XP_006649858.1| PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like
[Oryza brachyantha]
Length = 105
Score = 117 bits (294), Expect = 4e-24
Identities = 54/86 (62%), Positives = 73/86 (84%)
Frame = +3
Query: 303 REYSSKIFVSRLSFYTTDDELRNTFSQFGQIKEARLIRDPRTNRPKGYGFVEYSTDAEAE 482
+ +S++IFVSRLSFYTT++EL+N F+ FG ++EARL+RD +T RPKG+GFV+YS+ AEAE
Sbjct: 19 KSFSTEIFVSRLSFYTTEEELKNIFTPFGAVEEARLVRDNQTGRPKGFGFVKYSSQAEAE 78
Query: 483 KAIKSMDGKIYGGRLIFVEHAKSEST 560
KA+K+MDG+I GRLIFVE AK +
Sbjct: 79 KAVKAMDGRILRGRLIFVEIAKERKS 104
>ref|XP_003575643.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Brachypodium distachyon]
Length = 108
Score = 116 bits (290), Expect = 1e-23
Identities = 54/85 (63%), Positives = 71/85 (83%)
Frame = +3
Query: 309 YSSKIFVSRLSFYTTDDELRNTFSQFGQIKEARLIRDPRTNRPKGYGFVEYSTDAEAEKA 488
+S++IFVS+LSFYTT++EL+N FS FG I+EARL+RD +T RPKG+GFV+YS+ AEKA
Sbjct: 24 FSTEIFVSKLSFYTTEEELKNIFSPFGAIEEARLMRDNQTGRPKGFGFVKYSSQVAAEKA 83
Query: 489 IKSMDGKIYGGRLIFVEHAKSESTG 563
+K+MDG+I GR+IFVE AK TG
Sbjct: 84 VKAMDGRIIRGRIIFVETAKERDTG 108
>ref|XP_002284323.1| PREDICTED: cold-inducible RNA-binding protein [Vitis vinifera]
gi|297746123|emb|CBI16179.3| unnamed protein product
[Vitis vinifera]
Length = 112
Score = 112 bits (280), Expect = 2e-22
Identities = 53/94 (56%), Positives = 75/94 (79%)
Frame = +3
Query: 285 RAFFSHREYSSKIFVSRLSFYTTDDELRNTFSQFGQIKEARLIRDPRTNRPKGYGFVEYS 464
+ +FS R +SS+IFV+RLS YTT++EL FS FG + +ARLI+DP+T RPKG+GFV++
Sbjct: 15 KPWFSARRFSSEIFVTRLSGYTTNEELIEMFSPFGVVTQARLIKDPKTQRPKGFGFVKFE 74
Query: 465 TDAEAEKAIKSMDGKIYGGRLIFVEHAKSESTGE 566
++ +AEKA+K+M+G+I GRLIFVE AK+ GE
Sbjct: 75 SEVDAEKALKAMNGRIVRGRLIFVEIAKTTRPGE 108
>ref|NP_001169115.1| uncharacterized protein LOC100382959 [Zea mays]
gi|223975005|gb|ACN31690.1| unknown [Zea mays]
gi|414887554|tpg|DAA63568.1| TPA: hypothetical protein
ZEAMMB73_633512 [Zea mays]
Length = 103
Score = 112 bits (280), Expect = 2e-22
Identities = 54/86 (62%), Positives = 71/86 (82%)
Frame = +3
Query: 303 REYSSKIFVSRLSFYTTDDELRNTFSQFGQIKEARLIRDPRTNRPKGYGFVEYSTDAEAE 482
R +S++IFVSRLSFYTT++E ++ FS FG ++EARL+RD +T R KG+GFV+YS+ AEAE
Sbjct: 17 RCFSTEIFVSRLSFYTTEEEFKDIFSPFGTVEEARLMRDHQTGRMKGFGFVKYSSQAEAE 76
Query: 483 KAIKSMDGKIYGGRLIFVEHAKSEST 560
KA+K+MDGKI GRLIFVE AK +
Sbjct: 77 KAVKAMDGKILRGRLIFVEMAKGHES 102
>ref|XP_002461004.1| hypothetical protein SORBIDRAFT_02g039025 [Sorghum bicolor]
gi|241924381|gb|EER97525.1| hypothetical protein
SORBIDRAFT_02g039025 [Sorghum bicolor]
Length = 83
Score = 111 bits (278), Expect = 3e-22
Identities = 53/82 (64%), Positives = 70/82 (85%)
Frame = +3
Query: 303 REYSSKIFVSRLSFYTTDDELRNTFSQFGQIKEARLIRDPRTNRPKGYGFVEYSTDAEAE 482
R +S++IFVSRLSFYTT++E ++ FS FG ++EARL+RD +T R KG+GFV+YS+ AEAE
Sbjct: 2 RCFSTEIFVSRLSFYTTEEEFKDVFSSFGTVEEARLMRDQQTGRIKGFGFVKYSSQAEAE 61
Query: 483 KAIKSMDGKIYGGRLIFVEHAK 548
KA+K+MDG+I GRLIFVE AK
Sbjct: 62 KAVKAMDGRILRGRLIFVEMAK 83
>ref|XP_004159670.1| PREDICTED: cold-inducible RNA-binding protein B-like [Cucumis
sativus]
Length = 95
Score = 111 bits (277), Expect = 4e-22
Identities = 53/83 (63%), Positives = 67/83 (80%)
Frame = +3
Query: 315 SKIFVSRLSFYTTDDELRNTFSQFGQIKEARLIRDPRTNRPKGYGFVEYSTDAEAEKAIK 494
S++F+SRLS YTT + L+N FS FG I EARLIRDP+T RPKG+GFV + + AEA+KA+K
Sbjct: 7 SELFISRLSSYTTLERLKNLFSPFGSISEARLIRDPKTERPKGFGFVTFQSPAEAKKALK 66
Query: 495 SMDGKIYGGRLIFVEHAKSESTG 563
+MDG+I GRLIFVE AK+E G
Sbjct: 67 AMDGRIVDGRLIFVEFAKTEKHG 89
>ref|XP_004981486.1| PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like
isoform X1 [Setaria italica]
gi|514813407|ref|XP_004981487.1| PREDICTED: glycine-rich
RNA-binding protein 4, mitochondrial-like isoform X2
[Setaria italica]
Length = 104
Score = 110 bits (275), Expect = 7e-22
Identities = 53/86 (61%), Positives = 70/86 (81%)
Frame = +3
Query: 303 REYSSKIFVSRLSFYTTDDELRNTFSQFGQIKEARLIRDPRTNRPKGYGFVEYSTDAEAE 482
R +S++IFVSRLSFYTT++EL++ FS FG +KEARL+RD +T R KG+GFV YS+ AEAE
Sbjct: 19 RCFSTEIFVSRLSFYTTEEELKDVFSPFGNVKEARLMRDSQTGRLKGFGFVNYSSQAEAE 78
Query: 483 KAIKSMDGKIYGGRLIFVEHAKSEST 560
KA+K+M G+I GRLIFVE A+ +
Sbjct: 79 KAVKAMHGRILRGRLIFVEMAQGRKS 104
>ref|XP_006292104.1| hypothetical protein CARUB_v10018300mg [Capsella rubella]
gi|482560811|gb|EOA25002.1| hypothetical protein
CARUB_v10018300mg [Capsella rubella]
Length = 100
Score = 110 bits (275), Expect = 7e-22
Identities = 53/83 (63%), Positives = 66/83 (79%)
Frame = +3
Query: 303 REYSSKIFVSRLSFYTTDDELRNTFSQFGQIKEARLIRDPRTNRPKGYGFVEYSTDAEAE 482
+ S+++FVSRLS Y TD LR FSQFGQIKEARLIRD +T RPKG+GF+ Y ++ +A
Sbjct: 3 KRVSAQLFVSRLSAYATDQSLRQLFSQFGQIKEARLIRDSKTQRPKGFGFITYESEDDAR 62
Query: 483 KAIKSMDGKIYGGRLIFVEHAKS 551
KA+KS+DGKI GRLIFVE AK+
Sbjct: 63 KAMKSLDGKIVDGRLIFVEVAKN 85
>ref|XP_004135289.1| PREDICTED: cold-inducible RNA-binding protein B-like isoform 1
[Cucumis sativus] gi|449435013|ref|XP_004135290.1|
PREDICTED: cold-inducible RNA-binding protein B-like
isoform 2 [Cucumis sativus]
Length = 89
Score = 108 bits (271), Expect = 2e-21
Identities = 52/83 (62%), Positives = 66/83 (79%)
Frame = +3
Query: 315 SKIFVSRLSFYTTDDELRNTFSQFGQIKEARLIRDPRTNRPKGYGFVEYSTDAEAEKAIK 494
S++F+SRLS YTT + L+N FS FG I EARLIRDP+T RPKG+GFV + + AEA+KA+K
Sbjct: 7 SELFISRLSSYTTLERLKNLFSPFGSISEARLIRDPKTERPKGFGFVTFQSPAEAKKALK 66
Query: 495 SMDGKIYGGRLIFVEHAKSESTG 563
+MDG+I GRLIFVE AK+ G
Sbjct: 67 AMDGRIVDGRLIFVEFAKTGDMG 89
>ref|XP_002877450.1| hypothetical protein ARALYDRAFT_905782 [Arabidopsis lyrata subsp.
lyrata] gi|297323288|gb|EFH53709.1| hypothetical protein
ARALYDRAFT_905782 [Arabidopsis lyrata subsp. lyrata]
Length = 102
Score = 108 bits (271), Expect = 2e-21
Identities = 53/83 (63%), Positives = 65/83 (78%)
Frame = +3
Query: 303 REYSSKIFVSRLSFYTTDDELRNTFSQFGQIKEARLIRDPRTNRPKGYGFVEYSTDAEAE 482
+ S+++FVSRLS YTTD LR FS FGQIKEARLIRD T RPKG+GF+ + ++ +A
Sbjct: 3 KRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFESEDDAR 62
Query: 483 KAIKSMDGKIYGGRLIFVEHAKS 551
KA+KS+DGKI GRLIFVE AKS
Sbjct: 63 KALKSLDGKIVEGRLIFVEVAKS 85
>ref|NP_190188.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|7630030|emb|CAB88326.1| RNA binding protein-like
[Arabidopsis thaliana] gi|46931202|gb|AAT06405.1|
At3g46020 [Arabidopsis thaliana]
gi|50253530|gb|AAT71967.1| At3g46020 [Arabidopsis
thaliana] gi|332644581|gb|AEE78102.1| RNA recognition
motif-containing protein [Arabidopsis thaliana]
Length = 102
Score = 108 bits (269), Expect = 3e-21
Identities = 52/83 (62%), Positives = 65/83 (78%)
Frame = +3
Query: 303 REYSSKIFVSRLSFYTTDDELRNTFSQFGQIKEARLIRDPRTNRPKGYGFVEYSTDAEAE 482
+ S+++FVSRLS YTTD LR FS FGQIKEARLIRD T RPKG+GF+ + ++ +A
Sbjct: 3 KRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDAR 62
Query: 483 KAIKSMDGKIYGGRLIFVEHAKS 551
KA+KS+DGKI GRLIFVE AK+
Sbjct: 63 KALKSLDGKIVDGRLIFVEVAKN 85
>ref|XP_006848599.1| hypothetical protein AMTR_s00168p00066520 [Amborella trichopoda]
gi|548851921|gb|ERN10180.1| hypothetical protein
AMTR_s00168p00066520 [Amborella trichopoda]
Length = 125
Score = 106 bits (264), Expect = 1e-20
Identities = 49/82 (59%), Positives = 66/82 (80%)
Frame = +3
Query: 303 REYSSKIFVSRLSFYTTDDELRNTFSQFGQIKEARLIRDPRTNRPKGYGFVEYSTDAEAE 482
R +SS++FVSRLSFY+T+ L++ FS FG++ EARL+ D T RPKGYGF+ Y ++ EA+
Sbjct: 28 RGFSSELFVSRLSFYSTEQSLKDAFSPFGEVIEARLVIDKATLRPKGYGFIRYQSEIEAQ 87
Query: 483 KAIKSMDGKIYGGRLIFVEHAK 548
KA+K+MDG+ GGRLIFVE AK
Sbjct: 88 KAMKAMDGRFLGGRLIFVEVAK 109
>gb|EXC35053.1| Cold-inducible RNA-binding protein [Morus notabilis]
Length = 94
Score = 105 bits (263), Expect = 2e-20
Identities = 49/88 (55%), Positives = 68/88 (77%)
Frame = +3
Query: 303 REYSSKIFVSRLSFYTTDDELRNTFSQFGQIKEARLIRDPRTNRPKGYGFVEYSTDAEAE 482
+ SS++FVSRLS YTT++ L+ FS FG++ EARL+ D +T RPKG+GFV Y ++ EA+
Sbjct: 3 KRLSSQLFVSRLSSYTTNEHLKKLFSPFGEVLEARLVLDSKTQRPKGFGFVTYESEVEAQ 62
Query: 483 KAIKSMDGKIYGGRLIFVEHAKSESTGE 566
KA+K+M+G+I GRLIFVE AK+ GE
Sbjct: 63 KALKAMNGRIVDGRLIFVEVAKTSKPGE 90
>ref|XP_002533105.1| cold-inducible RNA binding protein, putative [Ricinus communis]
gi|223527096|gb|EEF29277.1| cold-inducible RNA binding
protein, putative [Ricinus communis]
Length = 94
Score = 103 bits (256), Expect = 1e-19
Identities = 47/84 (55%), Positives = 68/84 (80%)
Frame = +3
Query: 315 SKIFVSRLSFYTTDDELRNTFSQFGQIKEARLIRDPRTNRPKGYGFVEYSTDAEAEKAIK 494
S++FV RLS YTT+ +L FS FG +KEARL+ DPRT +PKG+GFV + ++++A+KA+K
Sbjct: 7 SQLFVGRLSCYTTNQKLEKLFSPFGIVKEARLVLDPRTQKPKGFGFVTFDSESQAQKALK 66
Query: 495 SMDGKIYGGRLIFVEHAKSESTGE 566
+M+G+I GRL+FVE AKS ++GE
Sbjct: 67 AMNGRIVDGRLLFVEVAKSINSGE 90
>ref|XP_003597341.1| Cold-inducible RNA-binding protein [Medicago truncatula]
gi|355486389|gb|AES67592.1| Cold-inducible RNA-binding
protein [Medicago truncatula]
gi|388509994|gb|AFK43063.1| unknown [Medicago
truncatula]
Length = 89
Score = 101 bits (251), Expect = 4e-19
Identities = 48/82 (58%), Positives = 62/82 (75%)
Frame = +3
Query: 315 SKIFVSRLSFYTTDDELRNTFSQFGQIKEARLIRDPRTNRPKGYGFVEYSTDAEAEKAIK 494
+K+FVSRLSFYTT +L + FS FG + EA LI D T RPKG+GFV Y ++ EAEKA K
Sbjct: 7 TKLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARK 66
Query: 495 SMDGKIYGGRLIFVEHAKSEST 560
+++G+I GRLIFVEHAK + +
Sbjct: 67 ALNGRIVDGRLIFVEHAKPKDS 88
>ref|XP_006279867.1| hypothetical protein CARUB_v10028559mg [Capsella rubella]
gi|482548571|gb|EOA12765.1| hypothetical protein
CARUB_v10028559mg [Capsella rubella]
Length = 98
Score = 100 bits (250), Expect = 5e-19
Identities = 46/82 (56%), Positives = 65/82 (79%)
Frame = +3
Query: 303 REYSSKIFVSRLSFYTTDDELRNTFSQFGQIKEARLIRDPRTNRPKGYGFVEYSTDAEAE 482
+ Y++++FVSRLS YTT+ LR FS FGQI EARLI+D +T RPKG+GF+ + ++ +A+
Sbjct: 3 KRYTAQLFVSRLSAYTTEQSLRQLFSPFGQITEARLIKDQQTQRPKGFGFITFKSENDAQ 62
Query: 483 KAIKSMDGKIYGGRLIFVEHAK 548
KA+K+++GKI RLIFVE AK
Sbjct: 63 KALKALNGKIVDSRLIFVEAAK 84
>ref|XP_002864655.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297310490|gb|EFH40914.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 95
Score = 100 bits (250), Expect = 5e-19
Identities = 46/82 (56%), Positives = 65/82 (79%)
Frame = +3
Query: 303 REYSSKIFVSRLSFYTTDDELRNTFSQFGQIKEARLIRDPRTNRPKGYGFVEYSTDAEAE 482
+ +++++FVSRLS YTTD LR F+ FGQI EARLIRD +T RPKG+GF+ + ++ +A+
Sbjct: 3 KRFTTQLFVSRLSAYTTDQSLRQLFAPFGQIIEARLIRDQQTQRPKGFGFITFESEDDAQ 62
Query: 483 KAIKSMDGKIYGGRLIFVEHAK 548
A+K+++GKI GRLIFVE AK
Sbjct: 63 NALKALNGKIVNGRLIFVEAAK 84
>ref|XP_006363377.1| PREDICTED: cold-inducible RNA-binding protein-like [Solanum
tuberosum]
Length = 125
Score = 99.4 bits (246), Expect = 2e-18
Identities = 44/83 (53%), Positives = 65/83 (78%)
Frame = +3
Query: 318 KIFVSRLSFYTTDDELRNTFSQFGQIKEARLIRDPRTNRPKGYGFVEYSTDAEAEKAIKS 497
++FV+RLSFYTT ++L+ FS FG + EARL++DPRT RPKG+GFV + ++A+A+ A+ S
Sbjct: 37 QLFVNRLSFYTTSEQLKKLFSPFGVVTEARLVKDPRTQRPKGFGFVTFESEADAQNALNS 96
Query: 498 MDGKIYGGRLIFVEHAKSESTGE 566
++G+I GRLIFVE A++ E
Sbjct: 97 LNGRIVDGRLIFVEVAETTEAVE 119
>ref|XP_004294595.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like isoform 2 [Fragaria vesca subsp. vesca]
Length = 91
Score = 99.4 bits (246), Expect = 2e-18
Identities = 47/86 (54%), Positives = 62/86 (72%)
Frame = +3
Query: 303 REYSSKIFVSRLSFYTTDDELRNTFSQFGQIKEARLIRDPRTNRPKGYGFVEYSTDAEAE 482
+ S +FVSRLS +T+ ++LR FS FG + EARL+ DP T RPKG+GFV Y ++ EA+
Sbjct: 3 KRLGSTLFVSRLSSFTSKEKLRQMFSPFGDVTEARLVIDPNTQRPKGFGFVTYKSEVEAQ 62
Query: 483 KAIKSMDGKIYGGRLIFVEHAKSEST 560
KAIK MDG++ GRL+FVE A E T
Sbjct: 63 KAIKVMDGRMVDGRLLFVEVAHPEDT 88
>ref|XP_006424765.1| hypothetical protein CICLE_v10029673mg [Citrus clementina]
gi|568870147|ref|XP_006488271.1| PREDICTED: glycine-rich
RNA-binding protein 4, mitochondrial-like [Citrus
sinensis] gi|557526699|gb|ESR38005.1| hypothetical
protein CICLE_v10029673mg [Citrus clementina]
Length = 94
Score = 98.6 bits (244), Expect = 3e-18
Identities = 45/83 (54%), Positives = 64/83 (77%)
Frame = +3
Query: 315 SKIFVSRLSFYTTDDELRNTFSQFGQIKEARLIRDPRTNRPKGYGFVEYSTDAEAEKAIK 494
+++FVSRLS Y T E + FS+FG + +A+LI DP+T RPKG+GF+ + ++ +A+KA+K
Sbjct: 7 AQLFVSRLSSYITTKEFKALFSRFGVVTDAKLITDPKTQRPKGFGFITFQSEDDAQKALK 66
Query: 495 SMDGKIYGGRLIFVEHAKSESTG 563
+MDG+I GRLIFVE AKS S G
Sbjct: 67 TMDGRIVNGRLIFVEVAKSRSPG 89