BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00008072
         (2668 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis v...   932   0.0  
ref|XP_004972822.1| PREDICTED: DNA topoisomerase 1-like isoform ...   923   0.0  
emb|CBI28783.3| unnamed protein product [Vitis vinifera]              923   0.0  
ref|XP_002443872.1| hypothetical protein SORBIDRAFT_07g003610 [S...   920   0.0  
ref|XP_006659124.1| PREDICTED: DNA topoisomerase 1-like [Oryza b...   918   0.0  
ref|NP_001061015.1| Os08g0154600 [Oryza sativa Japonica Group] g...   914   0.0  
gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma ca...   912   0.0  
gb|EAZ05628.1| hypothetical protein OsI_27847 [Oryza sativa Indi...   912   0.0  
ref|XP_004972820.1| PREDICTED: DNA topoisomerase 1-like isoform ...   908   0.0  
ref|NP_001157806.1| topoisomerase I [Zea mays] gi|240065169|gb|A...   904   0.0  
gb|AFW61219.1| DNA topoisomerase I [Zea mays]                         899   0.0  
gb|ACL52396.1| unknown [Zea mays]                                     899   0.0  
ref|XP_002317355.1| DNA topoisomerase family protein [Populus tr...   898   0.0  
ref|XP_002300344.1| DNA topoisomerase family protein [Populus tr...   897   0.0  
gb|EMT20272.1| DNA topoisomerase 1 [Aegilops tauschii]                892   0.0  
dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]                 890   0.0  
gb|EMS46223.1| DNA topoisomerase 1 [Triticum urartu]                  889   0.0  
gb|EMJ02410.1| hypothetical protein PRUPE_ppa001622mg [Prunus pe...   887   0.0  
dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica]                885   0.0  
dbj|BAJ84827.1| predicted protein [Hordeum vulgare subsp. vulgare]    884   0.0  

>ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera]
          Length = 883

 Score =  932 bits (2409), Expect = 0.0
 Identities = 496/774 (64%), Positives = 550/774 (71%), Gaps = 11/774 (1%)
 Frame = -2

Query: 2667 DDDKPLSLKYSSSGIVNRSAS--LQAVKASQSTKPLPLSVKLXXXXXXXXXXXXXXKPLL 2494
            +D+ PL LK         S+S  L +   S      P S K                PL 
Sbjct: 118  EDEIPLLLKLQLKSRKGASSSKLLDSKGLSSPASSRPQSQKAKVNNKNLSDDSEDEIPLS 177

Query: 2493 SRFQSKAIGGSSM-KDSNVAEXXXXXXXXXXXXXXXXXXXXXXXKGGQ-KRPLSGANPXX 2320
            S+F+ K   G+S+ K  N  E                         GQ KRPL  AN   
Sbjct: 178  SKFRLKTGMGASLDKLDNFDEKKPLTSTLKPNGISKKDDERVKSPKGQNKRPLGQANTSH 237

Query: 2319 XXXXXXXXXXXXXXXXXXKQEDFVKKESKTDDND-------HLPIAQRMKKTVSSNSASI 2161
                              KQ   VK E K DD+D       + P  +R+KK+VSS++   
Sbjct: 238  HSSSKKPKLLDGSVKGKVKQVS-VKAEQKDDDDDDNDDDDEYTPTVKRLKKSVSSDNKKA 296

Query: 2160 SKNALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPPGSGGGQKWTTLEHNGVIFPPPYK 1981
            SK  +                             +PP SG GQKWTTLEHNGVIFPPPYK
Sbjct: 297  SKTKVIPSSRKKATKKAKKSKKLAKSSKYSKSTKVPPNSGEGQKWTTLEHNGVIFPPPYK 356

Query: 1980 PHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYASKKQFIENFMHDWRLMLGKNHIIKK 1801
            PHGVKMLY G+PVDLTPEQEEVATMFAVMKDTDYA+K +FIENFM+DWR+ LGKNH+IKK
Sbjct: 357  PHGVKMLYNGRPVDLTPEQEEVATMFAVMKDTDYATKPRFIENFMNDWRVRLGKNHVIKK 416

Query: 1800 FELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVE 1621
            FELCDFTPIYEWH KEKEKKKQMT+               KYMWA+VDGVKEKVGNFRVE
Sbjct: 417  FELCDFTPIYEWHEKEKEKKKQMTTEEKKALKEEKLKQEDKYMWAVVDGVKEKVGNFRVE 476

Query: 1620 PPGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAPIPECPIPGERWKEIKHDNTVTWLAF 1441
            PPGLFRGRGEHPKMGKLK+RI P DITINIGK+AP+PECPIPGERWKE++HDNTVTWLAF
Sbjct: 477  PPGLFRGRGEHPKMGKLKKRICPSDITINIGKEAPVPECPIPGERWKEVRHDNTVTWLAF 536

Query: 1440 WNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRANYTRDFNSKDPTKRQ 1261
            WNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRA YT+DF +KD  KRQ
Sbjct: 537  WNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRATYTKDFTNKDTMKRQ 596

Query: 1260 IAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNT 1081
            IAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENV LVPPNKL+FDFLGKDSIRY NT
Sbjct: 597  IAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVALVPPNKLEFDFLGKDSIRYFNT 656

Query: 1080 VEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXXDTSKLNTHLKELMPGLTAKVFRTYN 901
            VEVE PVYKAIG F+T K                 DTSKLN HLKELMPGLTAKVFRTYN
Sbjct: 657  VEVELPVYKAIGQFKTGKSGG-------DDLFDKLDTSKLNAHLKELMPGLTAKVFRTYN 709

Query: 900  ASITLDAILNKETKDGTAPEKIAVYQHANKEVAIICNHQRSVSKSHENQMSKLNEKINDL 721
            ASITLD +LN+E + G A EKI +YQHANKEVAIICNHQRSVSKSH+ QMS+L+EK+ +L
Sbjct: 710  ASITLDEMLNREARGGDAMEKIVIYQHANKEVAIICNHQRSVSKSHDVQMSRLSEKMREL 769

Query: 720  KAQREELSTDLNRARKGKPPLKDKEGKTKKNLAPEAIGKKIAQIDAKIEKMEIDKQIKED 541
            +   +EL TDL RA+KGKPPLKD +GK KKN+ PE + +KIAQ + KIEKME D + KED
Sbjct: 770  QGVLDELKTDLARAKKGKPPLKDSDGKPKKNMTPEVLERKIAQTNTKIEKMERDMKTKED 829

Query: 540  LKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPNFRF 379
            LKTVALGTSKINYLDPRISVAWCKR EVPIEKIFNKSLLAKFAW+MDVDP+FRF
Sbjct: 830  LKTVALGTSKINYLDPRISVAWCKRQEVPIEKIFNKSLLAKFAWAMDVDPSFRF 883


>ref|XP_004972822.1| PREDICTED: DNA topoisomerase 1-like isoform X3 [Setaria italica]
          Length = 903

 Score =  923 bits (2386), Expect = 0.0
 Identities = 490/778 (62%), Positives = 551/778 (70%), Gaps = 15/778 (1%)
 Frame = -2

Query: 2667 DDDKPLSLKYSSSGIVNRSASLQAVKASQSTKPLPLSVKLXXXXXXXXXXXXXXKPLLSR 2488
            DDDKPLSLK +SS            K S +    P+  K               KPL SR
Sbjct: 152  DDDKPLSLKINSS------------KMSSNCASRPVLQKAVAKVEQPDEDSDDDKPLASR 199

Query: 2487 FQSKAI---GGSSMKDSN-----VAEXXXXXXXXXXXXXXXXXXXXXXXKGGQ---KRPL 2341
              + A    GG++ +DS       A                         G +   KRPL
Sbjct: 200  LPTNAAPKSGGNASEDSEDEKPLAARFSKVSGSGNLKLTSSSKGLNNDSNGPRNLGKRPL 259

Query: 2340 SGANPXXXXXXXXXXXXXXXXXXXXKQEDFVKKESKTDDNDHLPIAQRMKKTVSSNSASI 2161
              +N                          VK+E K DDND+ P+AQR+K   SS     
Sbjct: 260  DNSNQTSLALKKAKPSNVSASAS-------VKREIKADDNDNTPLAQRLKIGESSKGKPS 312

Query: 2160 SKNALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXM----PPGSGGGQKWTTLEHNGVIFP 1993
            +KN +                                  PPGSGGG+KWTTLEHNGVIFP
Sbjct: 313  AKNVVKKSPASMKKGIKKMKGKVKTKMMKNSQFSKTMKVPPGSGGGKKWTTLEHNGVIFP 372

Query: 1992 PPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYASKKQFIENFMHDWRLMLGKNH 1813
            PPYKPHGVKMLY GQPVDLTPEQEEVATMFAVMKDTDYA K  FIENF  DWR +LGKNH
Sbjct: 373  PPYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYAGKPTFIENFFTDWRTLLGKNH 432

Query: 1812 IIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGN 1633
            +IKKFELCDFTPIYEWHL+EKEKKKQMT+               KYMWA+VDGVKEKVGN
Sbjct: 433  VIKKFELCDFTPIYEWHLREKEKKKQMTTEEKKALREEKLKQEEKYMWAVVDGVKEKVGN 492

Query: 1632 FRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAPIPECPIPGERWKEIKHDNTVT 1453
            FRVEPPGLFRGRGEHPKMGKLK+RI+P DITINIG+DAP+PECPIPGERWKE+KHDNTVT
Sbjct: 493  FRVEPPGLFRGRGEHPKMGKLKRRIKPSDITINIGEDAPVPECPIPGERWKEVKHDNTVT 552

Query: 1452 WLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRANYTRDFNSKDP 1273
            WLAFWNDPI+ K+FKYVFLAASSSLKGQSDKEKYEK+R LK YIQ+IR NYT+DF SKD 
Sbjct: 553  WLAFWNDPISQKDFKYVFLAASSSLKGQSDKEKYEKSRKLKGYIQDIRDNYTKDFRSKDV 612

Query: 1272 TKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLKFDFLGKDSIR 1093
             KRQIAVATYLIDKLALRAGNEKD+DEADTVGCCTLKV+NV  +PPNK++FDFLGKDSIR
Sbjct: 613  AKRQIAVATYLIDKLALRAGNEKDEDEADTVGCCTLKVDNVTCLPPNKIQFDFLGKDSIR 672

Query: 1092 YLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXXDTSKLNTHLKELMPGLTAKVF 913
            Y NTVEVE  VYKAI  F+  K+                DT++LN HLK+LMPGLTAKVF
Sbjct: 673  YFNTVEVEELVYKAIEGFRAGKKPG-------KDLFDQLDTTRLNAHLKDLMPGLTAKVF 725

Query: 912  RTYNASITLDAILNKETKDGTAPEKIAVYQHANKEVAIICNHQRSVSKSHENQMSKLNEK 733
            RTYNASITLD IL+KET+DGT  EKIAVYQ ANKEVAIICNHQRSVSKSHE+QM++LNE+
Sbjct: 726  RTYNASITLDGILHKETEDGTLLEKIAVYQRANKEVAIICNHQRSVSKSHESQMTRLNER 785

Query: 732  INDLKAQREELSTDLNRARKGKPPLKDKEGKTKKNLAPEAIGKKIAQIDAKIEKMEIDKQ 553
            I+DLKAQR+EL  DL++A+KGKP   DKEGK K+NLAP+AI KKIA I+ KIEKME++K+
Sbjct: 786  IDDLKAQRDELKVDLSKAKKGKPLGYDKEGKQKRNLAPDAIEKKIAAIETKIEKMEMEKK 845

Query: 552  IKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPNFRF 379
             KEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEKIFNKSL+AKF W+MDVDP FRF
Sbjct: 846  TKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLVAKFGWAMDVDPEFRF 903


>emb|CBI28783.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  923 bits (2386), Expect = 0.0
 Identities = 459/623 (73%), Positives = 505/623 (81%), Gaps = 1/623 (0%)
 Frame = -2

Query: 2244 KESKTDDNDHLPIAQRMK-KTVSSNSASISKNALHXXXXXXXXXXXXXXXXXXXXXXXXX 2068
            K    D  D +P++ + + KTVSS++   SK  +                          
Sbjct: 109  KNLSDDSEDEIPLSSKFRLKTVSSDNKKASKTKVIPSSRKKATKKAKKSKKLAKSSKYSK 168

Query: 2067 XXXMPPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKD 1888
               +PP SG GQKWTTLEHNGVIFPPPYKPHGVKMLY G+PVDLTPEQEEVATMFAVMKD
Sbjct: 169  STKVPPNSGEGQKWTTLEHNGVIFPPPYKPHGVKMLYNGRPVDLTPEQEEVATMFAVMKD 228

Query: 1887 TDYASKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXX 1708
            TDYA+K +FIENFM+DWR+ LGKNH+IKKFELCDFTPIYEWH KEKEKKKQMT+      
Sbjct: 229  TDYATKPRFIENFMNDWRVRLGKNHVIKKFELCDFTPIYEWHEKEKEKKKQMTTEEKKAL 288

Query: 1707 XXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIG 1528
                     KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI P DITINIG
Sbjct: 289  KEEKLKQEDKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRICPSDITINIG 348

Query: 1527 KDAPIPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYE 1348
            K+AP+PECPIPGERWKE++HDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYE
Sbjct: 349  KEAPVPECPIPGERWKEVRHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYE 408

Query: 1347 KARLLKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 1168
            KARLLKDYIQNIRA YT+DF +KD  KRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT
Sbjct: 409  KARLLKDYIQNIRATYTKDFTNKDTMKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 468

Query: 1167 LKVENVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXX 988
            LKVENV LVPPNKL+FDFLGKDSIRY NTVEVE PVYKAIG F+T K             
Sbjct: 469  LKVENVALVPPNKLEFDFLGKDSIRYFNTVEVELPVYKAIGQFKTGKSGG-------DDL 521

Query: 987  XXXXDTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHANKE 808
                DTSKLN HLKELMPGLTAKVFRTYNASITLD +LN+E + G A EKI +YQHANKE
Sbjct: 522  FDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMLNREARGGDAMEKIVIYQHANKE 581

Query: 807  VAIICNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPPLKDKEGKTKKN 628
            VAIICNHQRSVSKSH+ QMS+L+EK+ +L+   +EL TDL RA+KGKPPLKD +GK KKN
Sbjct: 582  VAIICNHQRSVSKSHDVQMSRLSEKMRELQGVLDELKTDLARAKKGKPPLKDSDGKPKKN 641

Query: 627  LAPEAIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIE 448
            + PE + +KIAQ + KIEKME D + KEDLKTVALGTSKINYLDPRISVAWCKR EVPIE
Sbjct: 642  MTPEVLERKIAQTNTKIEKMERDMKTKEDLKTVALGTSKINYLDPRISVAWCKRQEVPIE 701

Query: 447  KIFNKSLLAKFAWSMDVDPNFRF 379
            KIFNKSLLAKFAW+MDVDP+FRF
Sbjct: 702  KIFNKSLLAKFAWAMDVDPSFRF 724


>ref|XP_002443872.1| hypothetical protein SORBIDRAFT_07g003610 [Sorghum bicolor]
            gi|241940222|gb|EES13367.1| hypothetical protein
            SORBIDRAFT_07g003610 [Sorghum bicolor]
          Length = 921

 Score =  920 bits (2377), Expect = 0.0
 Identities = 491/778 (63%), Positives = 553/778 (71%), Gaps = 15/778 (1%)
 Frame = -2

Query: 2667 DDDKPLSLKYSSSGIVNRSASLQAVKASQSTKPLPLSVKLXXXXXXXXXXXXXXKPLLSR 2488
            DDDKPLSLK +SS + N S S             P+  ++              KPL SR
Sbjct: 170  DDDKPLSLKINSSKMSNNSVSK------------PVLQRIAPKVEQPDEDSDDDKPLASR 217

Query: 2487 FQSKAI---GGSSMKDSN----VAEXXXXXXXXXXXXXXXXXXXXXXXKGGQ----KRPL 2341
              + A    GG+  +DS     +A                          GQ    KRPL
Sbjct: 218  LPNNACPKSGGNVSEDSEDEKPLAARFSKVAGSGNLKTASSSKGLNSDTNGQRSLGKRPL 277

Query: 2340 SGANPXXXXXXXXXXXXXXXXXXXXKQEDFVKKESKTDDNDHLPIAQRMKKTVSSN---- 2173
              +N                          VK+E KTDDND+ P+AQR+K   SS     
Sbjct: 278  DNSNQTSLAIKKAKPSNVSASAS-------VKREIKTDDNDNTPLAQRLKMGESSKGKPP 330

Query: 2172 SASISKNALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPPGSGGGQKWTTLEHNGVIFP 1993
            + SI K +                              +PPGSG G+KWTTLEHNGVIFP
Sbjct: 331  AKSIVKKSPASAKDIKKLKGKGKLKKNMKNSQFSKTMRVPPGSGEGKKWTTLEHNGVIFP 390

Query: 1992 PPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYASKKQFIENFMHDWRLMLGKNH 1813
            PPYKPHGVKMLY GQPVDLTPEQEEVATMFAVMKDTDYA K  FI+NF  DWR +LGKNH
Sbjct: 391  PPYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYAGKPTFIDNFFTDWRKILGKNH 450

Query: 1812 IIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGN 1633
            IIKKFELCDFTPIYEWHL+EKEKKKQMT+               KYMWA+VDGVKEKVGN
Sbjct: 451  IIKKFELCDFTPIYEWHLREKEKKKQMTTEEKKALREEKLKQEEKYMWAVVDGVKEKVGN 510

Query: 1632 FRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAPIPECPIPGERWKEIKHDNTVT 1453
            FRVEPPGLFRGRGEHPKMGKLK+RI+P DITINIGK AP+PECPIPGE WKEIKHDNTVT
Sbjct: 511  FRVEPPGLFRGRGEHPKMGKLKRRIQPSDITINIGKGAPVPECPIPGESWKEIKHDNTVT 570

Query: 1452 WLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRANYTRDFNSKDP 1273
            WLAFWNDPI+ K+FKYVFLAASSSLKGQSDKEKYEK+R LK +IQ IR NYT+DF +KD 
Sbjct: 571  WLAFWNDPISQKDFKYVFLAASSSLKGQSDKEKYEKSRKLKGHIQRIRENYTKDFKNKDV 630

Query: 1272 TKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLKFDFLGKDSIR 1093
            T+RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV+NV  +PPNK++FDFLGKDSIR
Sbjct: 631  TRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVDNVTCMPPNKIQFDFLGKDSIR 690

Query: 1092 YLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXXDTSKLNTHLKELMPGLTAKVF 913
            Y NTVEVE  VYKAI  F+  K+                DT++LN HLK+LMPGLTAKVF
Sbjct: 691  YFNTVEVEELVYKAIEGFRAGKKPG-------EGLFDKIDTTRLNAHLKDLMPGLTAKVF 743

Query: 912  RTYNASITLDAILNKETKDGTAPEKIAVYQHANKEVAIICNHQRSVSKSHENQMSKLNEK 733
            RTYNASITLD IL++ET+DGT  EKIAVYQ ANKEVAIICNHQRSVSKSHE+QM KLNEK
Sbjct: 744  RTYNASITLDGILHEETEDGTLLEKIAVYQRANKEVAIICNHQRSVSKSHESQMIKLNEK 803

Query: 732  INDLKAQREELSTDLNRARKGKPPLKDKEGKTKKNLAPEAIGKKIAQIDAKIEKMEIDKQ 553
            I++LK+Q EEL  DL++A+KGKP   DKEGK K+NLAPEAI KKIA ++ KI+KME+DK+
Sbjct: 804  IDELKSQMEELKADLSKAKKGKPLGYDKEGKQKRNLAPEAIEKKIAMVEGKIDKMEMDKK 863

Query: 552  IKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPNFRF 379
            IKEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEKIFNKSL+AKF W+MDVDP+FRF
Sbjct: 864  IKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLIAKFGWAMDVDPDFRF 921


>ref|XP_006659124.1| PREDICTED: DNA topoisomerase 1-like [Oryza brachyantha]
          Length = 911

 Score =  918 bits (2373), Expect = 0.0
 Identities = 485/779 (62%), Positives = 556/779 (71%), Gaps = 16/779 (2%)
 Frame = -2

Query: 2667 DDDKPLSLKYSSSGIVNRSAS-----------LQAVKASQSTKPL----PLSVKLXXXXX 2533
            DD+KPLSLK +S+   + S +           +Q    S+  KPL    P    L     
Sbjct: 149  DDNKPLSLKINSTKTPSNSTNKASVLKVTPKIVQPADDSEDEKPLARRLPAKTTLKSGAN 208

Query: 2532 XXXXXXXXXKPLLSRFQSKAIGGSSMKDSNVAEXXXXXXXXXXXXXXXXXXXXXXXKGGQ 2353
                      PL +RF SK  G +S   S+  +                       +   
Sbjct: 209  ASDDSEDEK-PLAARF-SKVTGSASASISSSKDKVQSANLKPSSSSKVSNNDTNTSRNSI 266

Query: 2352 KRPLSGANPXXXXXXXXXXXXXXXXXXXXKQEDFVKKESKTDDNDHLPIAQRMKKTVSSN 2173
            KRP+   N                          VK+ESK DDND++P++QR+K   SS 
Sbjct: 267  KRPIDNNNQSISALKKARPSDVSVSAS-------VKRESKADDNDNIPLSQRLKMGESSK 319

Query: 2172 SASISKNAL-HXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPPGSGGGQKWTTLEHNGVIF 1996
            S   +KN +                              +PPGSGGGQKWTTL HNGVIF
Sbjct: 320  SKPPAKNIVKKNPSSFKKDSKKMKTKKTMKNSQFSKTMKVPPGSGGGQKWTTLVHNGVIF 379

Query: 1995 PPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYASKKQFIENFMHDWRLMLGKN 1816
            PPPYKPHGVKMLY GQPVDLTPEQEEVATMF+VMKDTDYASK+ FI+NF  DWR +LGKN
Sbjct: 380  PPPYKPHGVKMLYNGQPVDLTPEQEEVATMFSVMKDTDYASKQTFIDNFFTDWRKILGKN 439

Query: 1815 HIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVKEKVG 1636
            HIIKKFELCDFTPIYEWHL+EKEKKKQMTS               KYMWA+VDGVKEKVG
Sbjct: 440  HIIKKFELCDFTPIYEWHLREKEKKKQMTSEEKKAVKEEKLKQEEKYMWAVVDGVKEKVG 499

Query: 1635 NFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAPIPECPIPGERWKEIKHDNTV 1456
            NFRVEPPGLFRGRGEHPKMGKLK+RI+P DITINIGK APIPECPIPGE WKE+KHDNTV
Sbjct: 500  NFRVEPPGLFRGRGEHPKMGKLKRRIQPSDITINIGKGAPIPECPIPGESWKEVKHDNTV 559

Query: 1455 TWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRANYTRDFNSKD 1276
            TWLAFWNDPI+ K+FKYVFLAASS+LKGQSDKEKYEK+R LK +I  IR  YT+DF SKD
Sbjct: 560  TWLAFWNDPISQKDFKYVFLAASSALKGQSDKEKYEKSRKLKHHIHKIRDTYTKDFRSKD 619

Query: 1275 PTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLKFDFLGKDSI 1096
             TK+QIAVATYLIDKLALRAGNEKDDDEA+TVGCCTLKV+NV  VPPN L+FDFLGKDSI
Sbjct: 620  KTKKQIAVATYLIDKLALRAGNEKDDDEAETVGCCTLKVDNVTCVPPNNLQFDFLGKDSI 679

Query: 1095 RYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXXDTSKLNTHLKELMPGLTAKV 916
            RY NTVEVE PVYKAI +F+  K+                DT++LN HLK+LMPGLTAKV
Sbjct: 680  RYFNTVEVELPVYKAIEEFRAGKKPG-------DDLFDKLDTTRLNAHLKDLMPGLTAKV 732

Query: 915  FRTYNASITLDAILNKETKDGTAPEKIAVYQHANKEVAIICNHQRSVSKSHENQMSKLNE 736
            FRTYNASITLD IL+KET+DGT  EKIAVYQ ANKEVAIICNHQRSVSKSH++QM++LNE
Sbjct: 733  FRTYNASITLDDILHKETEDGTLLEKIAVYQRANKEVAIICNHQRSVSKSHDSQMTRLNE 792

Query: 735  KINDLKAQREELSTDLNRARKGKPPLKDKEGKTKKNLAPEAIGKKIAQIDAKIEKMEIDK 556
            KI++LKAQR+EL  DL++ +KGK    DK+GK K+NLAPEA  KKI+Q++ KIEKME+DK
Sbjct: 793  KIDELKAQRDELKADLSKVKKGKSLGYDKDGKPKRNLAPEAFEKKISQVETKIEKMEMDK 852

Query: 555  QIKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPNFRF 379
            +IKEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEKIFNKSL+AKF+W+MDVDP+FRF
Sbjct: 853  KIKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLIAKFSWAMDVDPDFRF 911


>ref|NP_001061015.1| Os08g0154600 [Oryza sativa Japonica Group]
            gi|27817923|dbj|BAC55688.1| putative DNA topoisomerase I
            [Oryza sativa Japonica Group]
            gi|113622984|dbj|BAF22929.1| Os08g0154600 [Oryza sativa
            Japonica Group] gi|222639933|gb|EEE68065.1| hypothetical
            protein OsJ_26075 [Oryza sativa Japonica Group]
          Length = 916

 Score =  914 bits (2361), Expect = 0.0
 Identities = 486/783 (62%), Positives = 555/783 (70%), Gaps = 20/783 (2%)
 Frame = -2

Query: 2667 DDDKPLSLKYSSSGIVNRSASLQAVKA-----------SQSTKPL----PLSVKLXXXXX 2533
            DDDKPLSLK +S+   + SA+   V             S+  KPL    P +  L     
Sbjct: 150  DDDKPLSLKINSTKTPSSSANKAIVLKTTPKIEQPGDDSEDDKPLASRLPTNAALKRGGN 209

Query: 2532 XXXXXXXXXKPLLSRFQSKAIGGSSMKDSNVAEXXXXXXXXXXXXXXXXXXXXXXXKGGQ 2353
                      PL +RF SK  G +S   S+  +                       +   
Sbjct: 210  VSDDSEDEK-PLAARF-SKVTGNASASISSSKDKVLSASIKASSSSKMSNNDASTSRNSI 267

Query: 2352 KRPLSGANPXXXXXXXXXXXXXXXXXXXXKQEDFVKKESKTDDNDHLPIAQRMKKTVSSN 2173
            KRP+   N                          VK+E K DDND++P++QR+K   SS 
Sbjct: 268  KRPIDNNNQTSSALKKARPSDVSASAS-------VKREPKADDNDNVPLSQRLKMGESSK 320

Query: 2172 SASISKNALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXM-----PPGSGGGQKWTTLEHN 2008
            S   +KN +                                   PPGSGGGQKWTTL H+
Sbjct: 321  SKPPAKNIVKKSPSSLKKDNKKMKMKMKTKKTMKNSQFSKTMKVPPGSGGGQKWTTLVHS 380

Query: 2007 GVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYASKKQFIENFMHDWRLM 1828
            GVIFPPPYKPHGVKMLY GQPVDLTPEQEEVATMFAVMKDTDYASK+ FI+NF  DWR +
Sbjct: 381  GVIFPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYASKQTFIDNFFTDWRKI 440

Query: 1827 LGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVK 1648
            LGKNH+IKKFELCDFTPIYEWHL+EKEKKKQMTS               KYMWAIVDGVK
Sbjct: 441  LGKNHVIKKFELCDFTPIYEWHLREKEKKKQMTSEEKKALKEEKLKQEEKYMWAIVDGVK 500

Query: 1647 EKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAPIPECPIPGERWKEIKH 1468
            EKVGNFRVEPPGLFRGRGEHPKMGKLK+RI+P DITINIGK APIPECPIPGE WKE+KH
Sbjct: 501  EKVGNFRVEPPGLFRGRGEHPKMGKLKRRIKPSDITINIGKGAPIPECPIPGESWKEVKH 560

Query: 1467 DNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRANYTRDF 1288
            DNTVTWLAFWNDPI+ K+FKYVFLAASS+LKGQSDKEKYEK+R LK ++  IR  YT+DF
Sbjct: 561  DNTVTWLAFWNDPISQKDFKYVFLAASSALKGQSDKEKYEKSRKLKHHVHKIRDTYTKDF 620

Query: 1287 NSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLKFDFLG 1108
             SKD TK+QIAVATYLIDKLALRAGNEKD+DEA+TVGCCTLKV+NV  VPPNKL+FDFLG
Sbjct: 621  RSKDKTKKQIAVATYLIDKLALRAGNEKDEDEAETVGCCTLKVDNVTCVPPNKLQFDFLG 680

Query: 1107 KDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXXDTSKLNTHLKELMPGL 928
            KDSIRY NTVEVE  VYKAI +F+  K+                DT++LN HLK+LMPGL
Sbjct: 681  KDSIRYFNTVEVELLVYKAIEEFRAGKKPG-------QDLFDKLDTTRLNAHLKDLMPGL 733

Query: 927  TAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHANKEVAIICNHQRSVSKSHENQMS 748
            TAKVFRTYNASITLD IL+KET+DGT  EKIAVYQ ANKEVAIICNHQRSVSKSH++QM+
Sbjct: 734  TAKVFRTYNASITLDDILHKETEDGTLLEKIAVYQRANKEVAIICNHQRSVSKSHDSQMT 793

Query: 747  KLNEKINDLKAQREELSTDLNRARKGKPPLKDKEGKTKKNLAPEAIGKKIAQIDAKIEKM 568
            +LNEKI++LKAQR+EL  DL++ RKGK    DK+GK K+NLAPEA  KKI+QI+ KIEKM
Sbjct: 794  RLNEKIDELKAQRDELKADLSKVRKGKNLGNDKDGKPKRNLAPEAFEKKISQIETKIEKM 853

Query: 567  EIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPN 388
            E+DK+IKEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEKIFNKSL+AKF+W+MDVDP+
Sbjct: 854  EMDKKIKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLIAKFSWAMDVDPD 913

Query: 387  FRF 379
            FRF
Sbjct: 914  FRF 916


>gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma cacao]
            gi|508720293|gb|EOY12190.1| DNA topoisomerase I alpha
            isoform 1 [Theobroma cacao]
          Length = 904

 Score =  912 bits (2358), Expect = 0.0
 Identities = 462/626 (73%), Positives = 501/626 (80%), Gaps = 2/626 (0%)
 Frame = -2

Query: 2250 VKKESKTDDNDHLPIAQRMKKTVSSNSA-SISKNALHXXXXXXXXXXXXXXXXXXXXXXX 2074
            VK E   +D+DH+PIAQRMKK+ +SNS  S  K                           
Sbjct: 286  VKAEKADEDDDHMPIAQRMKKSTASNSKLSSMKQKTTKVVSSSFKKINKKSKKEMKSSKY 345

Query: 2073 XXXXXMPPGSGGGQK-WTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAV 1897
                 +PP SG GQK W+TL HNGVIFP PY PHGVKMLY G+PVDLTPEQEEVATMFAV
Sbjct: 346  IKSTKVPPSSGDGQKKWSTLVHNGVIFPSPYTPHGVKMLYDGRPVDLTPEQEEVATMFAV 405

Query: 1896 MKDTDYASKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXX 1717
            MKDTDY SK QF +NF  DW  +LGKNH IK  + CDFTPIYEWHL+EKEKKKQM+S   
Sbjct: 406  MKDTDYMSKTQFKKNFWEDWSKLLGKNHTIKDLDRCDFTPIYEWHLQEKEKKKQMSSEEK 465

Query: 1716 XXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITI 1537
                        K+MWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RIRP DITI
Sbjct: 466  KALKEEKLKQEEKFMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITI 525

Query: 1536 NIGKDAPIPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKE 1357
            NIGKDAPIPECPIPGERWK+IKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKE
Sbjct: 526  NIGKDAPIPECPIPGERWKDIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKE 585

Query: 1356 KYEKARLLKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVG 1177
            KYEKAR+LKDYI+NIRA YT+DF +KD  KRQIAVATYLIDKLALRAGNEKDDDEADTVG
Sbjct: 586  KYEKARMLKDYIKNIRAAYTKDFTTKDVMKRQIAVATYLIDKLALRAGNEKDDDEADTVG 645

Query: 1176 CCTLKVENVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXX 997
            CCTLKV NVE +PPNKLKFDFLGKDSI+Y+NTVEVE PVYKAIG FQT K  +       
Sbjct: 646  CCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKSKS------- 698

Query: 996  XXXXXXXDTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHA 817
                   DTSKLN HLKELMPGLTAKVFRTYNASITLD +LNKETKDG   EK+ VYQ A
Sbjct: 699  DDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMLNKETKDGDVAEKVVVYQRA 758

Query: 816  NKEVAIICNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPPLKDKEGKT 637
            NKEVAIICNHQRS+SKSH  QMS+L EKI +LK   +EL  DL+RA+KGKPPLKD +GK 
Sbjct: 759  NKEVAIICNHQRSISKSHSAQMSRLTEKITELKGVLKELKIDLDRAKKGKPPLKDADGKQ 818

Query: 636  KKNLAPEAIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEV 457
            K+NL P+AI KKI Q +AKIEKME D Q KEDLKTVALGTSKINYLDPRI+VAWCKRHEV
Sbjct: 819  KRNLTPQAIQKKIDQTNAKIEKMERDMQTKEDLKTVALGTSKINYLDPRITVAWCKRHEV 878

Query: 456  PIEKIFNKSLLAKFAWSMDVDPNFRF 379
            PIEKIFNKSLLAKFAW+MDVDP+FRF
Sbjct: 879  PIEKIFNKSLLAKFAWAMDVDPDFRF 904


>gb|EAZ05628.1| hypothetical protein OsI_27847 [Oryza sativa Indica Group]
          Length = 916

 Score =  912 bits (2357), Expect = 0.0
 Identities = 485/783 (61%), Positives = 555/783 (70%), Gaps = 20/783 (2%)
 Frame = -2

Query: 2667 DDDKPLSLKYSSSGIVNRSASLQAVKA-----------SQSTKPL----PLSVKLXXXXX 2533
            DDDKPLSLK +S+   + SA+   V             S+  KPL    P +  L     
Sbjct: 150  DDDKPLSLKINSTKTPSSSANKAIVLKTTPKIEQPGDDSEDDKPLASRLPTNAALKRGGN 209

Query: 2532 XXXXXXXXXKPLLSRFQSKAIGGSSMKDSNVAEXXXXXXXXXXXXXXXXXXXXXXXKGGQ 2353
                      PL +RF SK  G +S   S+  +                       +   
Sbjct: 210  VSDDSEDEK-PLAARF-SKVTGNASASISSSKDKVLSASIKASSSSKMSNNDASTSRNSI 267

Query: 2352 KRPLSGANPXXXXXXXXXXXXXXXXXXXXKQEDFVKKESKTDDNDHLPIAQRMKKTVSSN 2173
            KRP+   N                          VK+E K DDND++P++QR+K   SS 
Sbjct: 268  KRPIDNNNQTSSALKKARPSDVSASAS-------VKREPKADDNDNVPLSQRLKMGESSK 320

Query: 2172 SASISKNALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXM-----PPGSGGGQKWTTLEHN 2008
            S   +KN +                                   PPGSGGGQKWTTL H+
Sbjct: 321  SKPPAKNIVKKSPSSLKKDNKKMKMKLKTKKTMKNSQFSKTMKVPPGSGGGQKWTTLVHS 380

Query: 2007 GVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYASKKQFIENFMHDWRLM 1828
            GVIFPPPYKPHGVK+LY GQPVDLTPEQEEVATMFAVMKDTDYASK+ FI+NF  DWR +
Sbjct: 381  GVIFPPPYKPHGVKILYNGQPVDLTPEQEEVATMFAVMKDTDYASKQTFIDNFFTDWRKI 440

Query: 1827 LGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVK 1648
            LGKNH+IKKFELCDFTPIYEWHL+EKEKKKQMTS               KYMWAIVDGVK
Sbjct: 441  LGKNHVIKKFELCDFTPIYEWHLREKEKKKQMTSEEKKALKEEKLKQEEKYMWAIVDGVK 500

Query: 1647 EKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAPIPECPIPGERWKEIKH 1468
            EKVGNFRVEPPGLFRGRGEHPKMGKLK+RI+P DITINIGK APIPECPIPGE WKE+KH
Sbjct: 501  EKVGNFRVEPPGLFRGRGEHPKMGKLKRRIKPSDITINIGKGAPIPECPIPGESWKEVKH 560

Query: 1467 DNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRANYTRDF 1288
            DNTVTWLAFWNDPI+ K+FKYVFLAASS+LKGQSDKEKYEK+R LK ++  IR  YT+DF
Sbjct: 561  DNTVTWLAFWNDPISQKDFKYVFLAASSALKGQSDKEKYEKSRKLKHHVHKIRDTYTKDF 620

Query: 1287 NSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLKFDFLG 1108
             SKD TK+QIAVATYLIDKLALRAGNEKD+DEA+TVGCCTLKV+NV  VPPNKL+FDFLG
Sbjct: 621  RSKDKTKKQIAVATYLIDKLALRAGNEKDEDEAETVGCCTLKVDNVTCVPPNKLQFDFLG 680

Query: 1107 KDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXXDTSKLNTHLKELMPGL 928
            KDSIRY NTVEVE  VYKAI +F+  K+                DT++LN HLK+LMPGL
Sbjct: 681  KDSIRYFNTVEVELLVYKAIEEFRAGKKPG-------QDLFDKLDTTRLNAHLKDLMPGL 733

Query: 927  TAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHANKEVAIICNHQRSVSKSHENQMS 748
            TAKVFRTYNASITLD IL+KET+DGT  EKIAVYQ ANKEVAIICNHQRSVSKSH++QM+
Sbjct: 734  TAKVFRTYNASITLDDILHKETEDGTLLEKIAVYQRANKEVAIICNHQRSVSKSHDSQMT 793

Query: 747  KLNEKINDLKAQREELSTDLNRARKGKPPLKDKEGKTKKNLAPEAIGKKIAQIDAKIEKM 568
            +LNEKI++LKAQR+EL  DL++ RKGK    DK+GK K+NLAPEA  KKI+QI+ KIEKM
Sbjct: 794  RLNEKIDELKAQRDELKADLSKVRKGKNLGNDKDGKPKRNLAPEAFEKKISQIETKIEKM 853

Query: 567  EIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPN 388
            E+DK+IKEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEKIFNKSL+AKF+W+MDVDP+
Sbjct: 854  EMDKKIKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLIAKFSWAMDVDPD 913

Query: 387  FRF 379
            FRF
Sbjct: 914  FRF 916


>ref|XP_004972820.1| PREDICTED: DNA topoisomerase 1-like isoform X1 [Setaria italica]
          Length = 932

 Score =  908 bits (2346), Expect = 0.0
 Identities = 489/807 (60%), Positives = 550/807 (68%), Gaps = 44/807 (5%)
 Frame = -2

Query: 2667 DDDKPLSLKYSSSGIVNRSASLQAVKASQSTKPLPLSVKLXXXXXXXXXXXXXXKPLLSR 2488
            DDDKPLSLK +SS            K S +    P+  K               KPL SR
Sbjct: 152  DDDKPLSLKINSS------------KMSSNCASRPVLQKAVAKVEQPDEDSDDDKPLASR 199

Query: 2487 FQSKAI---GGSSMKDSN-----VAEXXXXXXXXXXXXXXXXXXXXXXXKGGQ---KRPL 2341
              + A    GG++ +DS       A                         G +   KRPL
Sbjct: 200  LPTNAAPKSGGNASEDSEDEKPLAARFSKVSGSGNLKLTSSSKGLNNDSNGPRNLGKRPL 259

Query: 2340 SGANPXXXXXXXXXXXXXXXXXXXXKQEDFVKKESKTDDNDHLPIAQRMKKTVSSNSASI 2161
              +N                          VK+E K DDND+ P+AQR+K   SS     
Sbjct: 260  DNSNQTSLALKKAKPSNVSASAS-------VKREIKADDNDNTPLAQRLKIGESSKGKPS 312

Query: 2160 SKNALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXM----PPGSGGGQKWTTLEHNGVIFP 1993
            +KN +                                  PPGSGGG+KWTTLEHNGVIFP
Sbjct: 313  AKNVVKKSPASMKKGIKKMKGKVKTKMMKNSQFSKTMKVPPGSGGGKKWTTLEHNGVIFP 372

Query: 1992 PPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYASKKQFIENFMHDWRLMLGKNH 1813
            PPYKPHGVKMLY GQPVDLTPEQEEVATMFAVMKDTDYA K  FIENF  DWR +LGKNH
Sbjct: 373  PPYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTDYAGKPTFIENFFTDWRTLLGKNH 432

Query: 1812 IIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGN 1633
            +IKKFELCDFTPIYEWHL+EKEKKKQMT+               KYMWA+VDGVKEKVGN
Sbjct: 433  VIKKFELCDFTPIYEWHLREKEKKKQMTTEEKKALREEKLKQEEKYMWAVVDGVKEKVGN 492

Query: 1632 FRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAPIPECPIPGERWKEIKHDNTVT 1453
            FRVEPPGLFRGRGEHPKMGKLK+RI+P DITINIG+DAP+PECPIPGERWKE+KHDNTVT
Sbjct: 493  FRVEPPGLFRGRGEHPKMGKLKRRIKPSDITINIGEDAPVPECPIPGERWKEVKHDNTVT 552

Query: 1452 WLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRANYTRDFNSKDP 1273
            WLAFWNDPI+ K+FKYVFLAASSSLKGQSDKEKYEK+R LK YIQ+IR NYT+DF SKD 
Sbjct: 553  WLAFWNDPISQKDFKYVFLAASSSLKGQSDKEKYEKSRKLKGYIQDIRDNYTKDFRSKDV 612

Query: 1272 TKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLKFDFLGKDSIR 1093
             KRQIAVATYLIDKLALRAGNEKD+DEADTVGCCTLKV+NV  +PPNK++FDFLGKDSIR
Sbjct: 613  AKRQIAVATYLIDKLALRAGNEKDEDEADTVGCCTLKVDNVTCLPPNKIQFDFLGKDSIR 672

Query: 1092 YLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXXDTSKLNTHLKELMPGLTAKVF 913
            Y NTVEVE  VYKAI  F+  K+                 T++LN HLK+LMPGLTAKVF
Sbjct: 673  YFNTVEVEELVYKAIEGFRAGKKPGKDLFDQLD-------TTRLNAHLKDLMPGLTAKVF 725

Query: 912  RTYNASITLDAILNKETKDGTAPEKIAVYQHANKEVAIICNHQRSVSKSHENQMSKLNEK 733
            RTYNASITLD IL+KET+DGT  EKIAVYQ ANKEVAIICNHQRSVSKSHE+QM++LNE+
Sbjct: 726  RTYNASITLDGILHKETEDGTLLEKIAVYQRANKEVAIICNHQRSVSKSHESQMTRLNER 785

Query: 732  INDLK-----------------------------AQREELSTDLNRARKGKPPLKDKEGK 640
            I+DLK                             AQR+EL  DL++A+KGKP   DKEGK
Sbjct: 786  IDDLKVGFLPQVINSCFYHGFFLEVFSIIFFLLQAQRDELKVDLSKAKKGKPLGYDKEGK 845

Query: 639  TKKNLAPEAIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHE 460
             K+NLAP+AI KKIA I+ KIEKME++K+ KEDLKTVALGTSKINYLDPRI+VAWCKRHE
Sbjct: 846  QKRNLAPDAIEKKIAAIETKIEKMEMEKKTKEDLKTVALGTSKINYLDPRITVAWCKRHE 905

Query: 459  VPIEKIFNKSLLAKFAWSMDVDPNFRF 379
            VPIEKIFNKSL+AKF W+MDVDP FRF
Sbjct: 906  VPIEKIFNKSLVAKFGWAMDVDPEFRF 932


>ref|NP_001157806.1| topoisomerase I [Zea mays] gi|240065169|gb|ACS44671.1| DNA
            topoisomerase I [Zea mays]
          Length = 904

 Score =  904 bits (2336), Expect = 0.0
 Identities = 452/629 (71%), Positives = 507/629 (80%), Gaps = 5/629 (0%)
 Frame = -2

Query: 2250 VKKESKTDDNDHLPIAQRMKKTVSSNSASISKNA-----LHXXXXXXXXXXXXXXXXXXX 2086
            V++E KTDDN   P+AQR+K   SS   S +K+      +                    
Sbjct: 285  VRREIKTDDNT--PLAQRLKMGESSKGKSSAKSVFKKSPVSVKKDIKKMKGKGKLKKNMK 342

Query: 2085 XXXXXXXXXMPPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATM 1906
                     +PPGSGGG+KWTTLEHNGVIFPPPYKPHGVKMLY G+PVDLTPEQEEVATM
Sbjct: 343  NSQFSKIMKVPPGSGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGKPVDLTPEQEEVATM 402

Query: 1905 FAVMKDTDYASKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTS 1726
            FAVMKDTDYA+K  FI+NF  DWR +LGKNHIIK FELCDFTPIYEWHL+EKE+KKQMT+
Sbjct: 403  FAVMKDTDYAAKPTFIDNFFTDWRKVLGKNHIIKNFELCDFTPIYEWHLREKERKKQMTT 462

Query: 1725 XXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKD 1546
                           KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI P D
Sbjct: 463  EEKKTLREDNLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRILPSD 522

Query: 1545 ITINIGKDAPIPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQS 1366
            ITINIGK AP+PECPIPGE WKE+KHDNTVTWLAFWNDPINPK+FKYVFLAASSSLKGQS
Sbjct: 523  ITINIGKGAPVPECPIPGESWKEVKHDNTVTWLAFWNDPINPKDFKYVFLAASSSLKGQS 582

Query: 1365 DKEKYEKARLLKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKDDDEAD 1186
            DKEKYEK+R LK +IQ IR NYT+DF +KD T+RQIAVATYLIDKLALRAGNEKDDDEAD
Sbjct: 583  DKEKYEKSRKLKGHIQRIRENYTKDFKNKDVTRRQIAVATYLIDKLALRAGNEKDDDEAD 642

Query: 1185 TVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXX 1006
            TVGCCTLKV+NV  +PPN+++FDFLGKDSIRY NTVEVE  VYKAI  F+  K+      
Sbjct: 643  TVGCCTLKVDNVTCMPPNQIQFDFLGKDSIRYFNTVEVEELVYKAIEGFRAGKKPG---- 698

Query: 1005 XXXXXXXXXXDTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVY 826
                      DTS+LN HLK+LMPGLTAKVFRTYNASITLD IL++ET+DGT  EKIAVY
Sbjct: 699  ---QDLFDKIDTSRLNAHLKDLMPGLTAKVFRTYNASITLDGILHEETEDGTVLEKIAVY 755

Query: 825  QHANKEVAIICNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPPLKDKE 646
            Q ANKEVAIICN QRSVSKSHE+QM+++NEKI++LK+Q EEL  DLN+A+KGKP   D E
Sbjct: 756  QRANKEVAIICNQQRSVSKSHESQMTRMNEKIDELKSQMEELKADLNKAKKGKPLGYDSE 815

Query: 645  GKTKKNLAPEAIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKR 466
            GK K+NLAPEAI KK+A ++ KIEKME+DK+IKEDLKTVALGTSKINYLDPRI+VAWCKR
Sbjct: 816  GKPKRNLAPEAIQKKVATLEGKIEKMEMDKRIKEDLKTVALGTSKINYLDPRITVAWCKR 875

Query: 465  HEVPIEKIFNKSLLAKFAWSMDVDPNFRF 379
            HEVPIEKIFNKSLLAKF W+MDVDP FRF
Sbjct: 876  HEVPIEKIFNKSLLAKFVWAMDVDPEFRF 904


>gb|AFW61219.1| DNA topoisomerase I [Zea mays]
          Length = 602

 Score =  899 bits (2322), Expect = 0.0
 Identities = 436/559 (77%), Positives = 484/559 (86%)
 Frame = -2

Query: 2055 PPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYA 1876
            PPGSGGG+KWTTLEHNGVIFPPPYKPHGVKMLY G+P+DLTPEQEEVATMFAVMKDTDYA
Sbjct: 51   PPGSGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGKPIDLTPEQEEVATMFAVMKDTDYA 110

Query: 1875 SKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXX 1696
            +K  FI+NF  DWR +LGKNHIIK FELCDFTPIYEWHL+EKE+KKQMT+          
Sbjct: 111  AKPTFIDNFFTDWRKVLGKNHIIKNFELCDFTPIYEWHLREKERKKQMTTEEKKTLREDK 170

Query: 1695 XXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAP 1516
                 KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI P DITINIGK AP
Sbjct: 171  LKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRILPSDITINIGKGAP 230

Query: 1515 IPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARL 1336
            +PECPIPGE WKE+KHDNTVTWLAFWNDPINPK+FKYVFLAASSSLKGQSDKEKYEK+R 
Sbjct: 231  VPECPIPGESWKEVKHDNTVTWLAFWNDPINPKDFKYVFLAASSSLKGQSDKEKYEKSRK 290

Query: 1335 LKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVE 1156
            LK +IQ IR NYT+DF +KD T+RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV+
Sbjct: 291  LKGHIQRIRENYTKDFKNKDVTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVD 350

Query: 1155 NVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXX 976
            NV  +PPN+++FDFLGKDSIRY NTVEVE  VYKAI  F+  K+                
Sbjct: 351  NVTCMPPNQIQFDFLGKDSIRYFNTVEVEELVYKAIEGFRAGKKPG-------QDLFDKI 403

Query: 975  DTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHANKEVAII 796
            DTS+LN HLK+LMPGLTAKVFRTYNASITLD IL++ET+DGT  EKIAVYQ ANKEVAII
Sbjct: 404  DTSRLNAHLKDLMPGLTAKVFRTYNASITLDGILHEETEDGTVLEKIAVYQRANKEVAII 463

Query: 795  CNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPPLKDKEGKTKKNLAPE 616
            CNHQRSVSKSHE+QM+++NEKI++LK+Q EEL  DLN+A+KGKP   D EGK K+NLAPE
Sbjct: 464  CNHQRSVSKSHESQMTRMNEKIDELKSQMEELKADLNKAKKGKPLGYDSEGKPKRNLAPE 523

Query: 615  AIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFN 436
            AI KK+A ++ KIEKME+DK+IKEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEKIFN
Sbjct: 524  AIQKKVATLEGKIEKMEMDKRIKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFN 583

Query: 435  KSLLAKFAWSMDVDPNFRF 379
            KSLLAKF W+MDVDP FRF
Sbjct: 584  KSLLAKFVWAMDVDPEFRF 602


>gb|ACL52396.1| unknown [Zea mays]
          Length = 574

 Score =  899 bits (2322), Expect = 0.0
 Identities = 436/559 (77%), Positives = 484/559 (86%)
 Frame = -2

Query: 2055 PPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDTDYA 1876
            PPGSGGG+KWTTLEHNGVIFPPPYKPHGVKMLY G+P+DLTPEQEEVATMFAVMKDTDYA
Sbjct: 23   PPGSGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGKPIDLTPEQEEVATMFAVMKDTDYA 82

Query: 1875 SKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXXXXX 1696
            +K  FI+NF  DWR +LGKNHIIK FELCDFTPIYEWHL+EKE+KKQMT+          
Sbjct: 83   AKPTFIDNFFTDWRKVLGKNHIIKNFELCDFTPIYEWHLREKERKKQMTTEEKKTLREDK 142

Query: 1695 XXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGKDAP 1516
                 KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI P DITINIGK AP
Sbjct: 143  LKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRILPSDITINIGKGAP 202

Query: 1515 IPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARL 1336
            +PECPIPGE WKE+KHDNTVTWLAFWNDPINPK+FKYVFLAASSSLKGQSDKEKYEK+R 
Sbjct: 203  VPECPIPGESWKEVKHDNTVTWLAFWNDPINPKDFKYVFLAASSSLKGQSDKEKYEKSRK 262

Query: 1335 LKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVE 1156
            LK +IQ IR NYT+DF +KD T+RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV+
Sbjct: 263  LKGHIQRIRENYTKDFKNKDVTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVD 322

Query: 1155 NVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXXXXXX 976
            NV  +PPN+++FDFLGKDSIRY NTVEVE  VYKAI  F+  K+                
Sbjct: 323  NVTCMPPNQIQFDFLGKDSIRYFNTVEVEELVYKAIEGFRAGKKPG-------QDLFDKI 375

Query: 975  DTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHANKEVAII 796
            DTS+LN HLK+LMPGLTAKVFRTYNASITLD IL++ET+DGT  EKIAVYQ ANKEVAII
Sbjct: 376  DTSRLNAHLKDLMPGLTAKVFRTYNASITLDGILHEETEDGTVLEKIAVYQRANKEVAII 435

Query: 795  CNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPPLKDKEGKTKKNLAPE 616
            CNHQRSVSKSHE+QM+++NEKI++LK+Q EEL  DLN+A+KGKP   D EGK K+NLAPE
Sbjct: 436  CNHQRSVSKSHESQMTRMNEKIDELKSQMEELKADLNKAKKGKPLGYDSEGKPKRNLAPE 495

Query: 615  AIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFN 436
            AI KK+A ++ KIEKME+DK+IKEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEKIFN
Sbjct: 496  AIQKKVATLEGKIEKMEMDKRIKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFN 555

Query: 435  KSLLAKFAWSMDVDPNFRF 379
            KSLLAKF W+MDVDP FRF
Sbjct: 556  KSLLAKFVWAMDVDPEFRF 574


>ref|XP_002317355.1| DNA topoisomerase family protein [Populus trichocarpa]
            gi|222860420|gb|EEE97967.1| DNA topoisomerase family
            protein [Populus trichocarpa]
          Length = 860

 Score =  898 bits (2320), Expect = 0.0
 Identities = 449/626 (71%), Positives = 492/626 (78%), Gaps = 2/626 (0%)
 Frame = -2

Query: 2250 VKKESKTDDNDHLPIAQRMKKTVSSNSASIS--KNALHXXXXXXXXXXXXXXXXXXXXXX 2077
            VK E K DD+DHL I+QRMKK  SS++ S+S  +N                         
Sbjct: 242  VKAELKADDDDHLTISQRMKKASSSSNKSLSVKQNVTKVVSFSSKKTTKNNKKQMQNSKY 301

Query: 2076 XXXXXXMPPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAV 1897
                   P  S G +KW TL HNGVIFPPPYKPHGVKMLYKG+PVDLTPEQEEVATMFAV
Sbjct: 302  SKSTKVQPGSSDGQKKWKTLVHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVATMFAV 361

Query: 1896 MKDTDYASKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXX 1717
            MKDT+Y  K QF++NF +DWR +LGKNH+I+K E CDF PIYEWH KEKEKKKQM++   
Sbjct: 362  MKDTEYVQKPQFLQNFWNDWRTLLGKNHVIQKLEACDFNPIYEWHQKEKEKKKQMSTEEK 421

Query: 1716 XXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITI 1537
                         YMWAIV+GVKEKVGNFRVEPPGLFRGRGEHPKMGKLK RIRP DITI
Sbjct: 422  KAVREEKLKQEEMYMWAIVNGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKSRIRPSDITI 481

Query: 1536 NIGKDAPIPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKE 1357
            NIGKDAPIP+CPIPGERWKE+KHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKE
Sbjct: 482  NIGKDAPIPKCPIPGERWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKE 541

Query: 1356 KYEKARLLKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVG 1177
            KYEKAR LKDYI NIR  YT+DF SKD TKRQIAVATYLIDKLALRAGNEKDDDEADTVG
Sbjct: 542  KYEKARKLKDYIHNIRTAYTKDFASKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVG 601

Query: 1176 CCTLKVENVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXX 997
            CCTLKV NVE +PPNKLKFDFLGKDSIRY NTVEVE PVYKAI  FQ AK+         
Sbjct: 602  CCTLKVANVECIPPNKLKFDFLGKDSIRYENTVEVELPVYKAIRQFQVAKKPT------- 654

Query: 996  XXXXXXXDTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHA 817
                   DTSKLN HLKELMPGLTAKVFRTYNASITLD  L +ET+DG   EK  +Y  A
Sbjct: 655  DDLFDSLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEKLYEETEDGDVAEKFVIYNQA 714

Query: 816  NKEVAIICNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPPLKDKEGKT 637
            NK+VAIICNHQR++SKSH+ QMS+L EK+ +LK   +E  TDL+RA+KGKPPLKD +GK 
Sbjct: 715  NKQVAIICNHQRTISKSHDAQMSRLTEKLEELKGTLKEFKTDLDRAKKGKPPLKDADGKQ 774

Query: 636  KKNLAPEAIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEV 457
            K+NL PEAI KKIA  + KIEKME+  + KEDLKTVALGTSKINYLDPRI+VAWCKRHEV
Sbjct: 775  KRNLTPEAIEKKIATTNQKIEKMELSMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEV 834

Query: 456  PIEKIFNKSLLAKFAWSMDVDPNFRF 379
            PIEKIFNKSLLAKF W+MDVDP FRF
Sbjct: 835  PIEKIFNKSLLAKFTWAMDVDPQFRF 860


>ref|XP_002300344.1| DNA topoisomerase family protein [Populus trichocarpa]
            gi|222847602|gb|EEE85149.1| DNA topoisomerase family
            protein [Populus trichocarpa]
          Length = 877

 Score =  897 bits (2319), Expect = 0.0
 Identities = 453/626 (72%), Positives = 498/626 (79%), Gaps = 2/626 (0%)
 Frame = -2

Query: 2250 VKKESKTDDNDHLPIAQRMKKTVSS-NSASISKNALHXXXXXXXXXXXXXXXXXXXXXXX 2074
            VK E K DD+DHL I+QRMKK  SS N +S +K  +                        
Sbjct: 259  VKVEQKADDDDHLTISQRMKKADSSANKSSFAKKKVTKVVSSSLKKTTQKNKKQMKNSKY 318

Query: 2073 XXXXXMPPGSGGGQK-WTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAV 1897
                 + PGS  GQK WTTL HNGVIFPPPYKPHGVK+LYKG+P+DLTPEQEEVATMFAV
Sbjct: 319  SKSTKVQPGSSDGQKKWTTLVHNGVIFPPPYKPHGVKILYKGKPIDLTPEQEEVATMFAV 378

Query: 1896 MKDTDYASKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXX 1717
            MKDTDY  K QF +NF +DWR +LGKNH+I+K + CDF PIYEWH +EKEKKKQM++   
Sbjct: 379  MKDTDYVQKPQFRQNFWNDWRKLLGKNHVIQKLDDCDFNPIYEWHQQEKEKKKQMSTEEK 438

Query: 1716 XXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITI 1537
                        KYMWAIV+GVKEKVGNFRVEPPGLFRGRGEHPKMGKLK RIRP DITI
Sbjct: 439  KVLKEEKLKQEEKYMWAIVNGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKSRIRPSDITI 498

Query: 1536 NIGKDAPIPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKE 1357
            NIGKDAPIPECPIPGERWKE+KHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKE
Sbjct: 499  NIGKDAPIPECPIPGERWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKE 558

Query: 1356 KYEKARLLKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVG 1177
            KYEKAR LKDYI NIRA YT+DF SKD TKRQIAVATYLIDKLALRAGNEKDDDEADTVG
Sbjct: 559  KYEKARKLKDYIHNIRAAYTKDFASKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVG 618

Query: 1176 CCTLKVENVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXX 997
            CCTLKV NVE +PPNKLKFDFLGKDSIRY NTVEVE PVYKAIG FQ AK+         
Sbjct: 619  CCTLKVANVECIPPNKLKFDFLGKDSIRYENTVEVELPVYKAIGHFQVAKKQT------- 671

Query: 996  XXXXXXXDTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHA 817
                   DTSKLN HLKELMPGLTAKVFRTYNASITLD  L +ET+DG   EKI +Y  A
Sbjct: 672  DDLFDSLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEKLYEETEDGDVAEKIVIYNQA 731

Query: 816  NKEVAIICNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPPLKDKEGKT 637
            NK+VAIICNHQR++SKSH+ QMS+L EKI +LK+  +EL TDL+RA+KGKPPLK  +GK 
Sbjct: 732  NKQVAIICNHQRTISKSHDAQMSRLTEKIEELKSTLKELKTDLDRAKKGKPPLKGADGKQ 791

Query: 636  KKNLAPEAIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEV 457
            K++L PEAI KKIA  + KIEKME+  + KEDLKTVALGTSKINYLDPRI+VAWCKRHEV
Sbjct: 792  KRSLTPEAIEKKIATTNQKIEKMEMAMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEV 851

Query: 456  PIEKIFNKSLLAKFAWSMDVDPNFRF 379
            PI+KIFNKSLLAKF W+MDVDP FRF
Sbjct: 852  PIDKIFNKSLLAKFTWAMDVDPQFRF 877


>gb|EMT20272.1| DNA topoisomerase 1 [Aegilops tauschii]
          Length = 949

 Score =  892 bits (2305), Expect = 0.0
 Identities = 442/627 (70%), Positives = 505/627 (80%), Gaps = 3/627 (0%)
 Frame = -2

Query: 2250 VKKESKTDDNDHLPIAQRMKKTVSSNSASISKNALHXXXXXXXXXXXXXXXXXXXXXXXX 2071
            VK+ESK DDN+ +P+ +++    SS S    KN +                         
Sbjct: 330  VKRESKVDDNNSVPVERKLTPGESSKSKPPVKNIVKKSPLSVKKDNKKFKTKTKKTMKSS 389

Query: 2070 XXXXM---PPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFA 1900
                    PPGSGGG+KW+TLEHNGVIFPPPY PHGVKMLY GQPV+LTPE+EEVATMFA
Sbjct: 390  QFSKSLRVPPGSGGGKKWSTLEHNGVIFPPPYNPHGVKMLYNGQPVELTPEEEEVATMFA 449

Query: 1899 VMKDTDYASKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXX 1720
            VMKDT+YA+KK FI+NF  DW+ +LGKNHIIKKFELCDFTPIYEWHL+EKEKKKQMTS  
Sbjct: 450  VMKDTEYAAKKTFIDNFFGDWKKILGKNHIIKKFELCDFTPIYEWHLREKEKKKQMTSEE 509

Query: 1719 XXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDIT 1540
                         KYMWA+VDGV+EKVGNFRVEPPGLFRGRGEHPKMGKLK+RIRP DIT
Sbjct: 510  RKALREEKLKQEEKYMWAVVDGVREKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDIT 569

Query: 1539 INIGKDAPIPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDK 1360
            INIGK  P+PECPI GE WKE+KHDNTVTWLAFWNDPI+ K+FKYVFLAASSSLKGQSDK
Sbjct: 570  INIGKGTPVPECPIEGESWKEVKHDNTVTWLAFWNDPISQKDFKYVFLAASSSLKGQSDK 629

Query: 1359 EKYEKARLLKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTV 1180
            EKYEK+R LKD+I NIR NYT+DFNSKD +K+QIAVATYLIDKLALRAGNEKDDDEADTV
Sbjct: 630  EKYEKSRKLKDHIHNIRVNYTKDFNSKDVSKKQIAVATYLIDKLALRAGNEKDDDEADTV 689

Query: 1179 GCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXX 1000
            GCCTLKV+NV  VPPNKL+FDFLGKDSIRY NTVEVE PVY AI +F+T K+        
Sbjct: 690  GCCTLKVDNVTCVPPNKLQFDFLGKDSIRYFNTVEVELPVYNAIEEFRTGKKDG------ 743

Query: 999  XXXXXXXXDTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQH 820
                    DT+KLN HLK+LMPGLTAKVFRTYNASITLDAIL++ET+DGT  EKIAVYQ 
Sbjct: 744  -DAVFDQLDTTKLNHHLKDLMPGLTAKVFRTYNASITLDAILHEETEDGTLLEKIAVYQR 802

Query: 819  ANKEVAIICNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPPLKDKEGK 640
            ANKEVAIICNHQR+VSKSH+ QM+KLNEKI++LKAQ  EL+ DL + ++GKP     +GK
Sbjct: 803  ANKEVAIICNHQRAVSKSHDTQMTKLNEKIDELKAQINELNKDLGKVKRGKPLGNGADGK 862

Query: 639  TKKNLAPEAIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHE 460
             K+ LAPEAI KKI+QI+ K+EKME+DK+ KEDLKTVALGTSKINYLDPRI+VAWCK HE
Sbjct: 863  PKRALAPEAIEKKISQIETKVEKMEMDKKTKEDLKTVALGTSKINYLDPRITVAWCKTHE 922

Query: 459  VPIEKIFNKSLLAKFAWSMDVDPNFRF 379
            VPIEKIF+K++LAKF W+MDV+P+FRF
Sbjct: 923  VPIEKIFSKTILAKFGWAMDVEPDFRF 949


>dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]
          Length = 910

 Score =  890 bits (2301), Expect = 0.0
 Identities = 451/628 (71%), Positives = 498/628 (79%), Gaps = 4/628 (0%)
 Frame = -2

Query: 2250 VKKESKT--DDNDHLPIAQRMKKTVSSNSASISKNALHXXXXXXXXXXXXXXXXXXXXXX 2077
            VK E K   DD+DHLPI+QR+KK+ +S S S S                           
Sbjct: 290  VKPEPKAEDDDDDHLPISQRIKKSPTSESKSSSIKKTTKVVSSSVKKVNKKSKKVMKNSK 349

Query: 2076 XXXXXXMPPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAV 1897
                  +PP SG G+KW  LEHNGVIFPPPYKPHG+KMLYKG+PVDLTPEQEEVATMFAV
Sbjct: 350  YSKSSKVPPSSGEGKKWNKLEHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVATMFAV 409

Query: 1896 MKDTDYASKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXX 1717
            M DTDY +K +F ENF  DW+ +LGKNH+I+  E CDF+PIYEWH  EKEKKKQMT+   
Sbjct: 410  MLDTDYMNKPRFKENFFGDWKKILGKNHVIQNLENCDFSPIYEWHQSEKEKKKQMTTEEK 469

Query: 1716 XXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITI 1537
                        KYMWA VDG KEKVGNFRVEPPGLFRGRGEHPKMGKLK+RIRP DITI
Sbjct: 470  KALKEEKLKQEEKYMWAWVDGKKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPCDITI 529

Query: 1536 NIGKDAPIPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKE 1357
            NIGKDAPIPECP+PGERWKE++HDNTVTWLAFWNDPINPKEFKYVFLAASS+LKG SDKE
Sbjct: 530  NIGKDAPIPECPVPGERWKEVRHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGLSDKE 589

Query: 1356 KYEKARLLKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVG 1177
            KYEKARLLKDYIQ IRA YT+DF SKDPTK+QIAVATYLIDKLALRAGNEKDDDEADTVG
Sbjct: 590  KYEKARLLKDYIQGIRAAYTKDFASKDPTKKQIAVATYLIDKLALRAGNEKDDDEADTVG 649

Query: 1176 CCTLKVENVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXX 997
            CCTLKVENVE VPPN LKFDFLGKDSIRY N VEVE  V+KAI  F++ K  +       
Sbjct: 650  CCTLKVENVEPVPPNILKFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGS------- 702

Query: 996  XXXXXXXDTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHA 817
                   DTSKLN HLKELMPGLTAKVFRTYNASITLD +L++ETK G   EK+ VYQHA
Sbjct: 703  SDLFDLLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSRETKGGDVAEKVVVYQHA 762

Query: 816  NKEVAIICNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPPLKDK--EG 643
            NKEVAIICNHQR+VSKSH  QM +LNEKI +LKA  EEL +DL+R +KGKPPLK K  +G
Sbjct: 763  NKEVAIICNHQRTVSKSHSAQMLRLNEKIEELKAVVEELKSDLSRVKKGKPPLKSKNADG 822

Query: 642  KTKKNLAPEAIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRH 463
            K K+NL PE++ KKIAQ +AKIEKME DK+ KEDLKTVALGTSKINYLDPRI+VAWCKRH
Sbjct: 823  KPKRNLNPESLEKKIAQTNAKIEKMERDKETKEDLKTVALGTSKINYLDPRITVAWCKRH 882

Query: 462  EVPIEKIFNKSLLAKFAWSMDVDPNFRF 379
            EVPIEKIFNKSLLAKF W+MDVDP+FRF
Sbjct: 883  EVPIEKIFNKSLLAKFTWAMDVDPSFRF 910


>gb|EMS46223.1| DNA topoisomerase 1 [Triticum urartu]
          Length = 947

 Score =  889 bits (2296), Expect = 0.0
 Identities = 440/626 (70%), Positives = 506/626 (80%), Gaps = 2/626 (0%)
 Frame = -2

Query: 2250 VKKESKTDDNDHLPIAQRMKKTVSSNSASISKNALHXXXXXXXXXXXXXXXXXXXXXXXX 2071
            VK+ES  DD++ +P+ +++    SS S    KN +                         
Sbjct: 329  VKRESTDDDSNSVPVERKLTPGESSKSKPPVKNIVKSPLSVKKDNKKFKTKTKKTMKSSQ 388

Query: 2070 XXXXM--PPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAV 1897
                +  PPGSGGG+KW+TLEHNGVIFPPPY PHGVKMLY GQPV+LTPE+EEVATMFAV
Sbjct: 389  FSKSLRVPPGSGGGKKWSTLEHNGVIFPPPYNPHGVKMLYNGQPVELTPEEEEVATMFAV 448

Query: 1896 MKDTDYASKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXX 1717
            MKDT+YA+KK FI+NF  DW+ +LGKNHIIKKFELCDFTPIYEWHL+EKEKKKQMTS   
Sbjct: 449  MKDTEYATKKTFIDNFFGDWKKILGKNHIIKKFELCDFTPIYEWHLREKEKKKQMTSEEK 508

Query: 1716 XXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITI 1537
                        KYMWA+VDGV+EKVGNFRVEPPGLFRGRGEHPKMGKLK+RIRP DITI
Sbjct: 509  KALREEKLKQEEKYMWAVVDGVREKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITI 568

Query: 1536 NIGKDAPIPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKE 1357
            NIGK  P+PECPI G+ WKE+KHDNTVTWLAFWNDPI+ K+FKYVFLAASSSLKGQSDKE
Sbjct: 569  NIGKGTPVPECPIEGQSWKEVKHDNTVTWLAFWNDPISQKDFKYVFLAASSSLKGQSDKE 628

Query: 1356 KYEKARLLKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVG 1177
            KYEK+R LKD+I NIR NYT+DFNSKD +K+QIAVATYLIDKLALRAGNEKDDDEADTVG
Sbjct: 629  KYEKSRKLKDHIHNIRVNYTKDFNSKDVSKKQIAVATYLIDKLALRAGNEKDDDEADTVG 688

Query: 1176 CCTLKVENVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXX 997
            CCTLKV+NV  VPPNKL+FDFLGKDSIRY NTVEVE PVY AI +F+T K+         
Sbjct: 689  CCTLKVDNVTCVPPNKLQFDFLGKDSIRYFNTVEVELPVYNAIEEFRTGKKDG------- 741

Query: 996  XXXXXXXDTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHA 817
                   DT+KLN HLK+LMPGLTAKVFRTYNASITLDAIL++ET+DGT  EKIAVYQ A
Sbjct: 742  DAVFDQLDTTKLNHHLKDLMPGLTAKVFRTYNASITLDAILHEETEDGTLLEKIAVYQRA 801

Query: 816  NKEVAIICNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPPLKDKEGKT 637
            NKEVAIICNHQR+VSKSH+ QM+KLNEKI++LKAQ +EL+ DL + ++GKP     +GK 
Sbjct: 802  NKEVAIICNHQRAVSKSHDTQMTKLNEKIDELKAQVDELNKDLGKVKRGKPLGNGADGKP 861

Query: 636  KKNLAPEAIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEV 457
            K+ LAPEAI KKI+QI+ KIEKME+DK+ KEDLKTVALGTSKINYLDPRI+VAWCK HEV
Sbjct: 862  KRTLAPEAIEKKISQIETKIEKMEMDKKTKEDLKTVALGTSKINYLDPRITVAWCKTHEV 921

Query: 456  PIEKIFNKSLLAKFAWSMDVDPNFRF 379
            PIEKIF+K++LAKF W+MDV+P+FRF
Sbjct: 922  PIEKIFSKTILAKFGWAMDVEPDFRF 947


>gb|EMJ02410.1| hypothetical protein PRUPE_ppa001622mg [Prunus persica]
          Length = 790

 Score =  887 bits (2292), Expect = 0.0
 Identities = 466/763 (61%), Positives = 531/763 (69%), Gaps = 3/763 (0%)
 Frame = -2

Query: 2658 KPLSLKYSSSGIVNRSASLQ--AVKASQSTKPLPLSVKLXXXXXXXXXXXXXXKPLLSRF 2485
            K L ++  S+ I   S S++  A + S S    P+  +L               PL SR 
Sbjct: 39   KQLPVQNKSTTIKEESNSIEHPAEENSDSEDAKPIKARLGKPCEDSDDDK----PLSSRI 94

Query: 2484 QSKAIGGSSMKDSNVAEXXXXXXXXXXXXXXXXXXXXXXXKGGQKRPLSGANPXXXXXXX 2305
              K +G S  +  +  E                           KRPL  AN        
Sbjct: 95   TPKKVGTSGSQPCDSKERKPVASKVQKNCSSTTDKGKTSYVISTKRPLDKANISEKSSAK 154

Query: 2304 XXXXXXXXXXXXXKQEDFVKKESKTDDNDHLPIAQRMKKTVSSNSASISKNALHXXXXXX 2125
                          Q    K+    DD+D +PI+QR+KK  S N + ++K  L       
Sbjct: 155  RPKVSDSSTSIKNMQVSAKKEPKGEDDDDFIPISQRIKKATSDNKSPVTKQKLTKVRPSS 214

Query: 2124 XXXXXXXXXXXXXXXXXXXXXXMPPGSGGGQK-WTTLEHNGVIFPPPYKPHGVKMLYKGQ 1948
                                  +PP S  GQK WT+L HNGVIFPPPYKPHGVKMLY G+
Sbjct: 215  IKKKIKKGQKASQFSKYSKSTTVPPSSNDGQKKWTSLVHNGVIFPPPYKPHGVKMLYSGK 274

Query: 1947 PVDLTPEQEEVATMFAVMKDTDYASKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYE 1768
            PV L+PEQEEVATM+AVMKDTDY  K+ F  NF +DW  +LGKNHII+K + CDFTPIY+
Sbjct: 275  PVTLSPEQEEVATMYAVMKDTDYVQKQTFRNNFWNDWHKLLGKNHIIQKLDACDFTPIYD 334

Query: 1767 WHLKEKEKKKQMTSXXXXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEH 1588
            W+  EKEKKKQM++               KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEH
Sbjct: 335  WYQNEKEKKKQMSTEEKKALKEDKLKEEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEH 394

Query: 1587 PKMGKLKQRIRPKDITINIGKDAPIPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFK 1408
            PK GKLK+RIRP D+TINIGKDAPIPECPIPGE WKE++HDNTVTWLAFWNDPIN +EFK
Sbjct: 395  PKSGKLKRRIRPSDVTINIGKDAPIPECPIPGESWKEVRHDNTVTWLAFWNDPINQREFK 454

Query: 1407 YVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKL 1228
            YVFLA SSSLKGQSDKEKYEKAR+LKDYI NIRA YTRDF SKD TKRQIAVATYLIDKL
Sbjct: 455  YVFLAPSSSLKGQSDKEKYEKARMLKDYIGNIRAAYTRDFTSKDGTKRQIAVATYLIDKL 514

Query: 1227 ALRAGNEKDDDEADTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAI 1048
            ALRAGNEKDDDEADTVGCCTLKVENV+ + PN L+F+FLGKDSIRY NTVEVE PVYKAI
Sbjct: 515  ALRAGNEKDDDEADTVGCCTLKVENVKAIAPNSLEFNFLGKDSIRYENTVEVEIPVYKAI 574

Query: 1047 GDFQTAKRSNXXXXXXXXXXXXXXDTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNK 868
              FQT KR                DTSKLN HLKELMPGLTAKVFRTYNASITLD ILNK
Sbjct: 575  IQFQTGKRG-------CDDLFDRLDTSKLNAHLKELMPGLTAKVFRTYNASITLDNILNK 627

Query: 867  ETKDGTAPEKIAVYQHANKEVAIICNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDL 688
            ETK+G   EK+ VYQHANKEVAIICNHQR++SK+H  QMS+L EKI +L++  +EL TDL
Sbjct: 628  ETKEGDLSEKVVVYQHANKEVAIICNHQRTISKTHSAQMSRLLEKIGNLQSILKELKTDL 687

Query: 687  NRARKGKPPLKDKEGKTKKNLAPEAIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKI 508
            +RA+KG+PPLKD +GK K+NL PEA+ +KIAQ   KIEKME+D + KEDLKTVALGTSKI
Sbjct: 688  DRAKKGRPPLKDADGKQKRNLTPEALERKIAQTTVKIEKMELDMRTKEDLKTVALGTSKI 747

Query: 507  NYLDPRISVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPNFRF 379
            NYLDPRI+VAWCKRHEVPIEKIFNKSLLAKFAWSMDVDP+FRF
Sbjct: 748  NYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPDFRF 790


>dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica]
          Length = 927

 Score =  885 bits (2288), Expect = 0.0
 Identities = 449/623 (72%), Positives = 498/623 (79%), Gaps = 4/623 (0%)
 Frame = -2

Query: 2235 KTDDNDHLPIAQRMKKT---VSSNSASISKNALHXXXXXXXXXXXXXXXXXXXXXXXXXX 2065
            K +D+D++PIAQR+KK+   VS +SA + K +                            
Sbjct: 314  KDEDDDNVPIAQRIKKSPASVSKSSAPVKKAST--VVSPSLKKVNKNSKKVIKKTAYTKS 371

Query: 2064 XXMPPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFAVMKDT 1885
              +PPGSG GQKWTTL HNGVIFPPPY PHGVKMLYK QP+ LTPEQEEVATMFAVM DT
Sbjct: 372  SKVPPGSGEGQKWTTLVHNGVIFPPPYNPHGVKMLYKRQPITLTPEQEEVATMFAVMLDT 431

Query: 1884 DYASKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXXXXXXX 1705
            DY +K +F ENF  DW+ MLGKNH I+  E CDF PIYEWH +EKEKKKQMT+       
Sbjct: 432  DYMNKPRFKENFFSDWKKMLGKNHTIQNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALK 491

Query: 1704 XXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDITINIGK 1525
                    KYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RIRP+DITINIGK
Sbjct: 492  EDKLQQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPRDITINIGK 551

Query: 1524 DAPIPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEK 1345
            DAPIPECPIPGERWKE+++DNTVTWLAFW DPIN KEFKYVFLAASS+LKGQSDKEKYEK
Sbjct: 552  DAPIPECPIPGERWKEVRNDNTVTWLAFWIDPINQKEFKYVFLAASSTLKGQSDKEKYEK 611

Query: 1344 ARLLKDYIQNIRANYTRDF-NSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 1168
            ARLLKDYI  IRA YT+DF N+KDP K+QIAVATYLIDKLALRAGNEKDDDEADTVGCCT
Sbjct: 612  ARLLKDYIHGIRAAYTKDFTNNKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCT 671

Query: 1167 LKVENVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXXXXXX 988
            LKVENVE VPPN LKFDFLGKDSIRY N V+VEP V+KAI  F++ K  +          
Sbjct: 672  LKVENVEPVPPNILKFDFLGKDSIRYQNEVQVEPAVFKAIQQFRSGKEGSEDLFDRLD-- 729

Query: 987  XXXXDTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQHANKE 808
                 TSKLN HLKELMPGLTAKVFRTYNASITLD +L+KETK G   EK+ VYQHANKE
Sbjct: 730  -----TSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSKETKGGEVAEKVVVYQHANKE 784

Query: 807  VAIICNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPPLKDKEGKTKKN 628
            VAIICNHQR+VSKSH  QMS+LNEKI++LK   EEL TDL+R +KGKPP K  +GK K+N
Sbjct: 785  VAIICNHQRTVSKSHSAQMSRLNEKIDELKTAMEELKTDLSRVKKGKPPSKGADGKPKRN 844

Query: 627  LAPEAIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIE 448
            L PEA+ +K+AQI+AKIEKME DK+ KEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIE
Sbjct: 845  LNPEALERKMAQINAKIEKMERDKETKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIE 904

Query: 447  KIFNKSLLAKFAWSMDVDPNFRF 379
            KIFNKSLLAKFAWSMDVDP+FRF
Sbjct: 905  KIFNKSLLAKFAWSMDVDPSFRF 927


>dbj|BAJ84827.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 946

 Score =  884 bits (2285), Expect = 0.0
 Identities = 439/627 (70%), Positives = 505/627 (80%), Gaps = 3/627 (0%)
 Frame = -2

Query: 2250 VKKESKTDDNDHLPIAQRMKKTVSSNSASISKNALHXXXXXXXXXXXXXXXXXXXXXXXX 2071
            VK+ESK DD++ +P+ +++    SS S    KN +                         
Sbjct: 327  VKRESKDDDSNSIPVERKLTLGESSKSKLPVKNIVKKSPLSVKKDNKKFKTKTKKAMKSS 386

Query: 2070 XXXXM---PPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQEEVATMFA 1900
                    PPGSGGG+KW+TLEHNGVIFPP Y PHGVKMLY GQPV+LTP++EEVATMFA
Sbjct: 387  QFSKSLREPPGSGGGKKWSTLEHNGVIFPPLYDPHGVKMLYNGQPVELTPDEEEVATMFA 446

Query: 1899 VMKDTDYASKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEKKKQMTSXX 1720
            VMKDT+YA+KK FI+NF  DW+ +LGKNHIIKKFELCDFTPI+EWHL+EKEKKKQMTS  
Sbjct: 447  VMKDTEYATKKTFIDNFFGDWKKILGKNHIIKKFELCDFTPIFEWHLREKEKKKQMTSEE 506

Query: 1719 XXXXXXXXXXXXXKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQRIRPKDIT 1540
                         KYMWA+VDGV+EKVGNFRVEPPGLFRGRGEHPKMGKLK+RIRP DIT
Sbjct: 507  KKALREEKLKQEEKYMWAVVDGVREKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDIT 566

Query: 1539 INIGKDAPIPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDK 1360
            INIGKD P+PECPI GE WKE+KHDNTVTWLAFWNDPI+ K+FKYVFLAASSSLKGQSDK
Sbjct: 567  INIGKDTPVPECPIEGESWKEVKHDNTVTWLAFWNDPISQKDFKYVFLAASSSLKGQSDK 626

Query: 1359 EKYEKARLLKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEKDDDEADTV 1180
            EKYEK+R LKD+I NIR NYT+DF SKD +K+QIAVATYLIDKLALRAGNEKDDDEADTV
Sbjct: 627  EKYEKSRKLKDHIHNIRVNYTKDFKSKDVSKKQIAVATYLIDKLALRAGNEKDDDEADTV 686

Query: 1179 GCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKRSNXXXXXX 1000
            GCCTLKV+NV  VPPNKL+FDFLGKDSIRY NTVEVE PVY AI +F+T K+        
Sbjct: 687  GCCTLKVDNVTCVPPNKLQFDFLGKDSIRYFNTVEVELPVYNAIEEFRTGKKDG------ 740

Query: 999  XXXXXXXXDTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAPEKIAVYQH 820
                    DT+KLN HLK+LMPGLTAKVFRTYNASITLDAIL++ET+DGT  EKIAVYQ 
Sbjct: 741  -DAVFDKLDTTKLNHHLKDLMPGLTAKVFRTYNASITLDAILHEETEDGTLLEKIAVYQR 799

Query: 819  ANKEVAIICNHQRSVSKSHENQMSKLNEKINDLKAQREELSTDLNRARKGKPPLKDKEGK 640
            ANKEVAIICNHQR+VSKSH+ QM+KLNEKI++LKAQ +EL+ DL + ++GKP     +GK
Sbjct: 800  ANKEVAIICNHQRAVSKSHDTQMTKLNEKIDELKAQVDELNKDLGKMKRGKPLGNGADGK 859

Query: 639  TKKNLAPEAIGKKIAQIDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRISVAWCKRHE 460
             K+ LAPEAI KKI+QI+ KIEKME+DK+ KEDLKTVALGTSKINYLDPRI+VAWCK HE
Sbjct: 860  PKRTLAPEAIEKKISQIETKIEKMEMDKKTKEDLKTVALGTSKINYLDPRITVAWCKTHE 919

Query: 459  VPIEKIFNKSLLAKFAWSMDVDPNFRF 379
            VPIEKIF+K++LAKF W+MDV+P+FRF
Sbjct: 920  VPIEKIFSKTILAKFGWAMDVEPDFRF 946