BLASTX nr result
ID: Zingiber23_contig00007392
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00007392
(900 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI24510.3| unnamed protein product [Vitis vinifera] 338 2e-90
ref|XP_002268371.1| PREDICTED: cleavage and polyadenylation spec... 338 2e-90
gb|EXC20897.1| Cleavage and polyadenylation specificity factor s... 326 8e-87
gb|EOY22974.1| Cleavage and polyadenylation specificity factor 1... 321 2e-85
ref|XP_002510905.1| cleavage and polyadenylation specificity fac... 321 3e-85
gb|EMJ21509.1| hypothetical protein PRUPE_ppa000211mg [Prunus pe... 319 8e-85
ref|XP_006401932.1| hypothetical protein EUTSA_v10012441mg [Eutr... 318 2e-84
ref|XP_004308159.1| PREDICTED: cleavage and polyadenylation spec... 317 5e-84
ref|XP_002864120.1| hypothetical protein ARALYDRAFT_495232 [Arab... 313 6e-83
ref|XP_006851814.1| hypothetical protein AMTR_s00041p00037520 [A... 309 1e-81
dbj|BAB11613.1| cleavage and polyadenylation specificity factor ... 308 2e-81
ref|NP_199979.2| cleavage and polyadenylation specificity factor... 308 2e-81
gb|AAN41460.1| putative cleavage and polyadenylation specificity... 308 2e-81
ref|XP_003534039.1| PREDICTED: cleavage and polyadenylation spec... 306 7e-81
ref|XP_006490256.1| PREDICTED: cleavage and polyadenylation spec... 303 6e-80
ref|XP_006490255.1| PREDICTED: cleavage and polyadenylation spec... 303 6e-80
ref|XP_006421760.1| hypothetical protein CICLE_v10004147mg [Citr... 303 6e-80
ref|XP_006421759.1| hypothetical protein CICLE_v10004147mg [Citr... 303 6e-80
gb|EEC76888.1| hypothetical protein OsI_15095 [Oryza sativa Indi... 303 7e-80
ref|XP_004514987.1| PREDICTED: cleavage and polyadenylation spec... 302 1e-79
>emb|CBI24510.3| unnamed protein product [Vitis vinifera]
Length = 1448
Score = 338 bits (867), Expect = 2e-90
Identities = 165/239 (69%), Positives = 203/239 (84%)
Frame = +3
Query: 183 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERRVGPVPNL 362
MSYAA+KMMH TGIE+CASGFVTHS ++ P +I PI +DDL+S EWP +R++GP+PNL
Sbjct: 1 MSYAAYKMMHWPTGIENCASGFVTHSRADFAP-QIAPIQTDDLES-EWPTKRQIGPLPNL 58
Query: 363 VVTAANVLEVYLVRVQEDDNKTLRASEDQRGSGGTMDGVSGARLELVCHYRLHGNVESMT 542
+VTAAN+LEVY+VRVQEDD++ RAS + + GG M G+SGA LELVC YRLHGNVE+MT
Sbjct: 59 IVTAANILEVYMVRVQEDDSRESRASAETK-RGGVMAGISGAALELVCQYRLHGNVETMT 117
Query: 543 ILSLGADNHNNRRDSIMLAFQDAKITVLEYDDSSHGLRTSSMHCFEGPDWQYLKRGRESF 722
+L G +++ RRDSI+LAFQDAKI+VLE+DDS HGLRTSSMHCFEGP+W +LKRG ESF
Sbjct: 118 VLPSGGGDNSRRRDSIILAFQDAKISVLEFDDSIHGLRTSSMHCFEGPEWFHLKRGHESF 177
Query: 723 AKGPVIQADPLGRCSGVLIYGLQMIILKAAQVGQGLVGDDEPTTSGGAVSVRIESSYVI 899
A+GP+++ DP GRCSGVL+YGLQMIILKA+Q G GLVGD+E +SG AVS R+ESSYVI
Sbjct: 178 ARGPLVKVDPQGRCSGVLVYGLQMIILKASQAGYGLVGDEEALSSGSAVSARVESSYVI 236
>ref|XP_002268371.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
1-like [Vitis vinifera]
Length = 1442
Score = 338 bits (867), Expect = 2e-90
Identities = 165/239 (69%), Positives = 203/239 (84%)
Frame = +3
Query: 183 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERRVGPVPNL 362
MSYAA+KMMH TGIE+CASGFVTHS ++ P +I PI +DDL+S EWP +R++GP+PNL
Sbjct: 1 MSYAAYKMMHWPTGIENCASGFVTHSRADFAP-QIAPIQTDDLES-EWPTKRQIGPLPNL 58
Query: 363 VVTAANVLEVYLVRVQEDDNKTLRASEDQRGSGGTMDGVSGARLELVCHYRLHGNVESMT 542
+VTAAN+LEVY+VRVQEDD++ RAS + + GG M G+SGA LELVC YRLHGNVE+MT
Sbjct: 59 IVTAANILEVYMVRVQEDDSRESRASAETK-RGGVMAGISGAALELVCQYRLHGNVETMT 117
Query: 543 ILSLGADNHNNRRDSIMLAFQDAKITVLEYDDSSHGLRTSSMHCFEGPDWQYLKRGRESF 722
+L G +++ RRDSI+LAFQDAKI+VLE+DDS HGLRTSSMHCFEGP+W +LKRG ESF
Sbjct: 118 VLPSGGGDNSRRRDSIILAFQDAKISVLEFDDSIHGLRTSSMHCFEGPEWFHLKRGHESF 177
Query: 723 AKGPVIQADPLGRCSGVLIYGLQMIILKAAQVGQGLVGDDEPTTSGGAVSVRIESSYVI 899
A+GP+++ DP GRCSGVL+YGLQMIILKA+Q G GLVGD+E +SG AVS R+ESSYVI
Sbjct: 178 ARGPLVKVDPQGRCSGVLVYGLQMIILKASQAGYGLVGDEEALSSGSAVSARVESSYVI 236
>gb|EXC20897.1| Cleavage and polyadenylation specificity factor subunit 1 [Morus
notabilis]
Length = 1479
Score = 326 bits (835), Expect = 8e-87
Identities = 163/241 (67%), Positives = 199/241 (82%), Gaps = 2/241 (0%)
Frame = +3
Query: 183 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWP-GERRVGPVPN 359
MS+AA+KMMH TGIE+CA+GFV+HS ++ P IPPI SDDLDS +WP G R GPVPN
Sbjct: 1 MSFAAYKMMHWPTGIENCAAGFVSHSRADFVP-RIPPIQSDDLDS-DWPAGRRETGPVPN 58
Query: 360 LVVTAANVLEVYLVRVQE-DDNKTLRASEDQRGSGGTMDGVSGARLELVCHYRLHGNVES 536
LVVTA NVLEVY+VR+QE DD ++ RA + R GG MDG+SGA LELVCHYRLHGNV++
Sbjct: 59 LVVTAGNVLEVYVVRLQEEDDTRSSRAPAESR-RGGLMDGLSGASLELVCHYRLHGNVQT 117
Query: 537 MTILSLGADNHNNRRDSIMLAFQDAKITVLEYDDSSHGLRTSSMHCFEGPDWQYLKRGRE 716
+ +LS G + + RRDSI+L+FQDAKI+VLE+DDS HGLRTSSMHCFEGP+W YLKRGRE
Sbjct: 118 IAVLSSGGGDGSRRRDSIILSFQDAKISVLEFDDSIHGLRTSSMHCFEGPEWLYLKRGRE 177
Query: 717 SFAKGPVIQADPLGRCSGVLIYGLQMIILKAAQVGQGLVGDDEPTTSGGAVSVRIESSYV 896
SFA+GP+++ DP GRC+GVL Y +QMI+LKAAQ G GLVG+++ SGGAVS RIESSY+
Sbjct: 178 SFARGPLVKVDPQGRCAGVLAYNIQMIMLKAAQAGSGLVGEEDALGSGGAVSARIESSYI 237
Query: 897 I 899
I
Sbjct: 238 I 238
>gb|EOY22974.1| Cleavage and polyadenylation specificity factor 160 isoform 1
[Theobroma cacao]
Length = 1457
Score = 321 bits (823), Expect = 2e-85
Identities = 156/239 (65%), Positives = 196/239 (82%)
Frame = +3
Query: 183 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERRVGPVPNL 362
MSYAA+KMMH TGIE+CASGFVTH ++ TP +IP ++DL+S EWP R +GPVPNL
Sbjct: 1 MSYAAYKMMHWPTGIENCASGFVTHCRADFTP-QIPLNQTEDLES-EWPARRGIGPVPNL 58
Query: 363 VVTAANVLEVYLVRVQEDDNKTLRASEDQRGSGGTMDGVSGARLELVCHYRLHGNVESMT 542
+VTAAN+LE+Y+VRVQE+ + R S + + GG +DGVSG LELVC+YRLHGNVESM
Sbjct: 59 IVTAANLLEIYVVRVQEEGRREARNSTEVK-RGGVLDGVSGVSLELVCNYRLHGNVESMA 117
Query: 543 ILSLGADNHNNRRDSIMLAFQDAKITVLEYDDSSHGLRTSSMHCFEGPDWQYLKRGRESF 722
+LS+G + + RRDSI+LAF+DAKI+VLE+DDS HGLRT+SMHCFEGP+W +LKRGRESF
Sbjct: 118 VLSIGGGDGSRRRDSIILAFKDAKISVLEFDDSIHGLRTTSMHCFEGPEWLHLKRGRESF 177
Query: 723 AKGPVIQADPLGRCSGVLIYGLQMIILKAAQVGQGLVGDDEPTTSGGAVSVRIESSYVI 899
A+GP+++ DP GRC GVL+Y LQMIILKA+Q G G VG+D+ SGGAVS R+ESSY+I
Sbjct: 178 ARGPLVKVDPQGRCGGVLVYDLQMIILKASQAGSGFVGEDDAFGSGGAVSARVESSYII 236
>ref|XP_002510905.1| cleavage and polyadenylation specificity factor cpsf, putative
[Ricinus communis] gi|223550020|gb|EEF51507.1| cleavage
and polyadenylation specificity factor cpsf, putative
[Ricinus communis]
Length = 1461
Score = 321 bits (822), Expect = 3e-85
Identities = 153/239 (64%), Positives = 196/239 (82%)
Frame = +3
Query: 183 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERRVGPVPNL 362
MSYAA+KM+H TGIE CASG++THS ++ P +IPPI +D+LDS P +R +GP+PNL
Sbjct: 1 MSYAAYKMLHWPTGIESCASGYITHSRADFVP-QIPPIQTDNLDSEWPPSKRGIGPMPNL 59
Query: 363 VVTAANVLEVYLVRVQEDDNKTLRASEDQRGSGGTMDGVSGARLELVCHYRLHGNVESMT 542
+VTA +VLEVY+VRVQED ++ R+S + + GG MDGVSGA LELVCHYRLHGNVESM
Sbjct: 60 IVTAGSVLEVYVVRVQEDGSRESRSSRETK-RGGLMDGVSGASLELVCHYRLHGNVESMV 118
Query: 543 ILSLGADNHNNRRDSIMLAFQDAKITVLEYDDSSHGLRTSSMHCFEGPDWQYLKRGRESF 722
+L + + RRDSI+LAF+DAKI+VLE+DDS HGLRTSSMHCFEGP+W +LKRGRESF
Sbjct: 119 VLPTEGGDSSRRRDSIILAFKDAKISVLEFDDSIHGLRTSSMHCFEGPEWLHLKRGRESF 178
Query: 723 AKGPVIQADPLGRCSGVLIYGLQMIILKAAQVGQGLVGDDEPTTSGGAVSVRIESSYVI 899
A+GP+++ DP GRC G+L+Y +QMIIL+AAQ GLVGDD+ +SGG++S R++SSYVI
Sbjct: 179 ARGPLLKVDPQGRCGGILVYDMQMIILRAAQASSGLVGDDDALSSGGSISARVQSSYVI 237
>gb|EMJ21509.1| hypothetical protein PRUPE_ppa000211mg [Prunus persica]
Length = 1459
Score = 319 bits (818), Expect = 8e-85
Identities = 156/240 (65%), Positives = 194/240 (80%), Gaps = 1/240 (0%)
Frame = +3
Query: 183 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERR-VGPVPN 359
MS+AA+KMMH TGIE+CASGF++HS S+ P IPPI ++DL+S EWP RR +GP+P+
Sbjct: 1 MSFAAYKMMHWPTGIENCASGFISHSRSDFVP-RIPPIQTEDLES-EWPTSRREIGPIPD 58
Query: 360 LVVTAANVLEVYLVRVQEDDNKTLRASEDQRGSGGTMDGVSGARLELVCHYRLHGNVESM 539
LVVTA NVLEVY+VRVQE+D + + GG MDGVSGA LELVCHYRLHGNV +M
Sbjct: 59 LVVTAGNVLEVYVVRVQEEDGTRGPRASGEPKRGGLMDGVSGASLELVCHYRLHGNVVTM 118
Query: 540 TILSLGADNHNNRRDSIMLAFQDAKITVLEYDDSSHGLRTSSMHCFEGPDWQYLKRGRES 719
+LS G + + RRDSI+L F+DAKI+VLE+DDS HGLRTSSMHCFEGP+W +L+RGRES
Sbjct: 119 AVLSSGGGDGSRRRDSIILTFEDAKISVLEFDDSIHGLRTSSMHCFEGPEWLHLRRGRES 178
Query: 720 FAKGPVIQADPLGRCSGVLIYGLQMIILKAAQVGQGLVGDDEPTTSGGAVSVRIESSYVI 899
FA+GP+++ DP GRC +L+YGLQMIILKA+Q G GLVGDD+ SGGA+S RIESSY++
Sbjct: 179 FARGPLVKVDPQGRCGSILVYGLQMIILKASQGGSGLVGDDDSFGSGGAISSRIESSYIV 238
>ref|XP_006401932.1| hypothetical protein EUTSA_v10012441mg [Eutrema salsugineum]
gi|557103022|gb|ESQ43385.1| hypothetical protein
EUTSA_v10012441mg [Eutrema salsugineum]
Length = 1445
Score = 318 bits (815), Expect = 2e-84
Identities = 154/245 (62%), Positives = 196/245 (80%), Gaps = 6/245 (2%)
Frame = +3
Query: 183 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERR-VGPVPN 359
MS+AAFKMMH TG+E+CASG++THS S++T +IP ++ DDL++ EWP +R +G VPN
Sbjct: 1 MSFAAFKMMHWPTGVENCASGYITHSISDTTTQQIPIVSGDDLEA-EWPAPKRGIGAVPN 59
Query: 360 LVVTAANVLEVYLVRVQEDDNKTLRASEDQRGS-----GGTMDGVSGARLELVCHYRLHG 524
+V+TA N+LEVY+VRVQE+ N S++ R GG M+GVSG LELVCHYRLHG
Sbjct: 60 VVITAGNILEVYVVRVQEEVN----TSQEPRNPKLVRRGGVMEGVSGVSLELVCHYRLHG 115
Query: 525 NVESMTILSLGADNHNNRRDSIMLAFQDAKITVLEYDDSSHGLRTSSMHCFEGPDWQYLK 704
NVES+ +L +G N + RDSI+L F+DAKI+VLE+DDS HGLR +SMHCFEGPDW +LK
Sbjct: 116 NVESLAVLPMGGGNSSKGRDSIVLTFRDAKISVLEFDDSIHGLRMNSMHCFEGPDWLHLK 175
Query: 705 RGRESFAKGPVIQADPLGRCSGVLIYGLQMIILKAAQVGQGLVGDDEPTTSGGAVSVRIE 884
RGRESFA+GP+++ DP GRC GVL+YGLQMIILKA+Q G GLVGDD+P +SGG VS R+E
Sbjct: 176 RGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQAGFGLVGDDDPFSSGGTVSARVE 235
Query: 885 SSYVI 899
SSY+I
Sbjct: 236 SSYII 240
>ref|XP_004308159.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
1-like [Fragaria vesca subsp. vesca]
Length = 1439
Score = 317 bits (811), Expect = 5e-84
Identities = 157/240 (65%), Positives = 190/240 (79%), Gaps = 1/240 (0%)
Frame = +3
Query: 183 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERR-VGPVPN 359
MSYAA KMMH TGIE+CA+GF+THS ++ P IP I +DDLDS +WP RR +GPVPN
Sbjct: 1 MSYAAHKMMHWPTGIENCAAGFITHSRADFVP-RIPQIQTDDLDS-DWPAPRREIGPVPN 58
Query: 360 LVVTAANVLEVYLVRVQEDDNKTLRASEDQRGSGGTMDGVSGARLELVCHYRLHGNVESM 539
LVVTAANVLEVY+VRVQE D + + GG MDGV+GA LELVCHYRLHGNV +M
Sbjct: 59 LVVTAANVLEVYVVRVQEQDTARGSRASGESKRGGLMDGVAGASLELVCHYRLHGNVMTM 118
Query: 540 TILSLGADNHNNRRDSIMLAFQDAKITVLEYDDSSHGLRTSSMHCFEGPDWQYLKRGRES 719
+LS G + + RRD+I+L F+DAKI+VLE+DDS HGLRTSSMHCFEGP+W +L+RGRES
Sbjct: 119 AVLSSGGGDGSKRRDAIILTFEDAKISVLEFDDSIHGLRTSSMHCFEGPEWLHLRRGRES 178
Query: 720 FAKGPVIQADPLGRCSGVLIYGLQMIILKAAQVGQGLVGDDEPTTSGGAVSVRIESSYVI 899
FA+GP ++ DP GRC GVL+Y LQ+IILKAAQ G GLVGDD+ SG A+S R+ESSY+I
Sbjct: 179 FARGPSVKVDPQGRCGGVLVYDLQLIILKAAQGGYGLVGDDDGFASGAAISARVESSYII 238
>ref|XP_002864120.1| hypothetical protein ARALYDRAFT_495232 [Arabidopsis lyrata subsp.
lyrata] gi|297309955|gb|EFH40379.1| hypothetical protein
ARALYDRAFT_495232 [Arabidopsis lyrata subsp. lyrata]
Length = 1444
Score = 313 bits (802), Expect = 6e-83
Identities = 150/240 (62%), Positives = 188/240 (78%), Gaps = 1/240 (0%)
Frame = +3
Query: 183 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERR-VGPVPN 359
MS+AAFKMMH TG+E+CASG++THS S+ST +IP ++ DD +EWP +R +GP+PN
Sbjct: 1 MSFAAFKMMHWPTGVENCASGYITHSLSDST-LQIPIVSGDDDMEAEWPNHKRGIGPLPN 59
Query: 360 LVVTAANVLEVYLVRVQEDDNKTLRASEDQRGSGGTMDGVSGARLELVCHYRLHGNVESM 539
+V+TA N+LEVY+VR QE+ N GG MDGVSG LELVCHYRLHGNVES+
Sbjct: 60 VVITAGNILEVYIVRAQEEGNTQELRIPKLVKRGGVMDGVSGVSLELVCHYRLHGNVESI 119
Query: 540 TILSLGADNHNNRRDSIMLAFQDAKITVLEYDDSSHGLRTSSMHCFEGPDWQYLKRGRES 719
+L +G N + RDSI+L F+DAKI+VLE+DDS H LR +SMHCFEGPDW +LKRGRES
Sbjct: 120 AVLPMGGGNSSKGRDSIILTFRDAKISVLEFDDSIHSLRMTSMHCFEGPDWLHLKRGRES 179
Query: 720 FAKGPVIQADPLGRCSGVLIYGLQMIILKAAQVGQGLVGDDEPTTSGGAVSVRIESSYVI 899
F +GP+++ DP GRC GVL+YGLQMIILKA+QVG GLVGDD+ +SGG VS R+ESSY+I
Sbjct: 180 FPRGPLVKVDPQGRCGGVLVYGLQMIILKASQVGSGLVGDDDAFSSGGTVSARVESSYII 239
>ref|XP_006851814.1| hypothetical protein AMTR_s00041p00037520 [Amborella trichopoda]
gi|548855397|gb|ERN13281.1| hypothetical protein
AMTR_s00041p00037520 [Amborella trichopoda]
Length = 1459
Score = 309 bits (791), Expect = 1e-81
Identities = 155/244 (63%), Positives = 193/244 (79%), Gaps = 5/244 (2%)
Frame = +3
Query: 183 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEW---PGERRVGPV 353
MS++AFK+MH AT +E+CASG++THS S+ A +P I +DD DS EW P + R+GP+
Sbjct: 1 MSFSAFKLMHWATAVENCASGYITHSFSDFA-ASVPAIQNDDPDS-EWDQPPVKARIGPI 58
Query: 354 PNLVVTAANVLEVYLVRVQEDDNKTLRASEDQRGS--GGTMDGVSGARLELVCHYRLHGN 527
PNLV++AANVLEVY++RVQE+D+K R S GS GG + GVSGA LELVCHYRLHGN
Sbjct: 59 PNLVISAANVLEVYVIRVQEEDSKASRHSGASSGSKGGGVVAGVSGAWLELVCHYRLHGN 118
Query: 528 VESMTILSLGADNHNNRRDSIMLAFQDAKITVLEYDDSSHGLRTSSMHCFEGPDWQYLKR 707
VE+M ILS G+D+ +RDSI+L F++AKI+VLEYDDS HGLRTSSMHCFEGP+WQYLKR
Sbjct: 119 VETMAILSAGSDDGRRKRDSIILTFKEAKISVLEYDDSLHGLRTSSMHCFEGPEWQYLKR 178
Query: 708 GRESFAKGPVIQADPLGRCSGVLIYGLQMIILKAAQVGQGLVGDDEPTTSGGAVSVRIES 887
GRE+FA+GP++ DP GRC GVLI QM+ILKA++ G G VGDD+ G VS+RIES
Sbjct: 179 GRENFARGPLVYVDPQGRCGGVLICDSQMLILKASKAGYGFVGDDDANGPTGTVSIRIES 238
Query: 888 SYVI 899
SYVI
Sbjct: 239 SYVI 242
>dbj|BAB11613.1| cleavage and polyadenylation specificity factor subunit
[Arabidopsis thaliana]
Length = 1448
Score = 308 bits (788), Expect = 2e-81
Identities = 147/240 (61%), Positives = 187/240 (77%), Gaps = 1/240 (0%)
Frame = +3
Query: 183 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERR-VGPVPN 359
MS+AA+KMMH TG+E+CASG++THS S+ST +IP ++ D +EWP +R +GP+PN
Sbjct: 1 MSFAAYKMMHWPTGVENCASGYITHSLSDST-LQIPIVSVHDDIEAEWPNPKRGIGPLPN 59
Query: 360 LVVTAANVLEVYLVRVQEDDNKTLRASEDQRGSGGTMDGVSGARLELVCHYRLHGNVESM 539
+V+TAAN+LEVY+VR QE+ N + GG MDGV G LELVCHYRLHGNVES+
Sbjct: 60 VVITAANILEVYIVRAQEEGNTQELRNPKLAKRGGVMDGVYGVSLELVCHYRLHGNVESI 119
Query: 540 TILSLGADNHNNRRDSIMLAFQDAKITVLEYDDSSHGLRTSSMHCFEGPDWQYLKRGRES 719
+L +G N + RDSI+L F+DAKI+VLE+DDS H LR +SMHCFEGPDW +LKRGRES
Sbjct: 120 AVLPMGGGNSSKGRDSIILTFRDAKISVLEFDDSIHSLRMTSMHCFEGPDWLHLKRGRES 179
Query: 720 FAKGPVIQADPLGRCSGVLIYGLQMIILKAAQVGQGLVGDDEPTTSGGAVSVRIESSYVI 899
F +GP+++ DP GRC GVL+YGLQMIILK +QVG GLVGDD+ +SGG VS R+ESSY+I
Sbjct: 180 FPRGPLVKVDPQGRCGGVLVYGLQMIILKTSQVGSGLVGDDDAFSSGGTVSARVESSYII 239
>ref|NP_199979.2| cleavage and polyadenylation specificity factor subunit 1
[Arabidopsis thaliana]
gi|290457637|sp|Q9FGR0.2|CPSF1_ARATH RecName:
Full=Cleavage and polyadenylation specificity factor
subunit 1; AltName: Full=Cleavage and polyadenylation
specificity factor 160 kDa subunit; Short=AtCPSF160;
Short=CPSF 160 kDa subunit gi|332008729|gb|AED96112.1|
cleavage and polyadenylation specificity factor subunit
1 [Arabidopsis thaliana]
Length = 1442
Score = 308 bits (788), Expect = 2e-81
Identities = 147/240 (61%), Positives = 187/240 (77%), Gaps = 1/240 (0%)
Frame = +3
Query: 183 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERR-VGPVPN 359
MS+AA+KMMH TG+E+CASG++THS S+ST +IP ++ D +EWP +R +GP+PN
Sbjct: 1 MSFAAYKMMHWPTGVENCASGYITHSLSDST-LQIPIVSVHDDIEAEWPNPKRGIGPLPN 59
Query: 360 LVVTAANVLEVYLVRVQEDDNKTLRASEDQRGSGGTMDGVSGARLELVCHYRLHGNVESM 539
+V+TAAN+LEVY+VR QE+ N + GG MDGV G LELVCHYRLHGNVES+
Sbjct: 60 VVITAANILEVYIVRAQEEGNTQELRNPKLAKRGGVMDGVYGVSLELVCHYRLHGNVESI 119
Query: 540 TILSLGADNHNNRRDSIMLAFQDAKITVLEYDDSSHGLRTSSMHCFEGPDWQYLKRGRES 719
+L +G N + RDSI+L F+DAKI+VLE+DDS H LR +SMHCFEGPDW +LKRGRES
Sbjct: 120 AVLPMGGGNSSKGRDSIILTFRDAKISVLEFDDSIHSLRMTSMHCFEGPDWLHLKRGRES 179
Query: 720 FAKGPVIQADPLGRCSGVLIYGLQMIILKAAQVGQGLVGDDEPTTSGGAVSVRIESSYVI 899
F +GP+++ DP GRC GVL+YGLQMIILK +QVG GLVGDD+ +SGG VS R+ESSY+I
Sbjct: 180 FPRGPLVKVDPQGRCGGVLVYGLQMIILKTSQVGSGLVGDDDAFSSGGTVSARVESSYII 239
>gb|AAN41460.1| putative cleavage and polyadenylation specificity factor 160 kDa
subunit [Arabidopsis thaliana]
Length = 1442
Score = 308 bits (788), Expect = 2e-81
Identities = 147/240 (61%), Positives = 187/240 (77%), Gaps = 1/240 (0%)
Frame = +3
Query: 183 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERR-VGPVPN 359
MS+AA+KMMH TG+E+CASG++THS S+ST +IP ++ D +EWP +R +GP+PN
Sbjct: 1 MSFAAYKMMHWPTGVENCASGYITHSLSDST-LQIPIVSVHDDIEAEWPNPKRGIGPLPN 59
Query: 360 LVVTAANVLEVYLVRVQEDDNKTLRASEDQRGSGGTMDGVSGARLELVCHYRLHGNVESM 539
+V+TAAN+LEVY+VR QE+ N + GG MDGV G LELVCHYRLHGNVES+
Sbjct: 60 VVITAANILEVYIVRAQEEGNTQELRNPKLAKRGGVMDGVYGVSLELVCHYRLHGNVESI 119
Query: 540 TILSLGADNHNNRRDSIMLAFQDAKITVLEYDDSSHGLRTSSMHCFEGPDWQYLKRGRES 719
+L +G N + RDSI+L F+DAKI+VLE+DDS H LR +SMHCFEGPDW +LKRGRES
Sbjct: 120 AVLPMGGGNSSKGRDSIILTFRDAKISVLEFDDSIHSLRMTSMHCFEGPDWLHLKRGRES 179
Query: 720 FAKGPVIQADPLGRCSGVLIYGLQMIILKAAQVGQGLVGDDEPTTSGGAVSVRIESSYVI 899
F +GP+++ DP GRC GVL+YGLQMIILK +QVG GLVGDD+ +SGG VS R+ESSY+I
Sbjct: 180 FPRGPLVKVDPQGRCGGVLVYGLQMIILKTSQVGSGLVGDDDAFSSGGTVSARVESSYII 239
>ref|XP_003534039.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
1-like isoform X1 [Glycine max]
Length = 1449
Score = 306 bits (784), Expect = 7e-81
Identities = 152/241 (63%), Positives = 188/241 (78%), Gaps = 2/241 (0%)
Frame = +3
Query: 183 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERR--VGPVP 356
MS+AA+KMM TGI++CA+GF+THS S + P+ DDLD++EWP R VGP+P
Sbjct: 1 MSFAAYKMMQCPTGIDNCAAGFLTHSRS-----DFVPLQPDDLDAAEWPSRPRHHVGPLP 55
Query: 357 NLVVTAANVLEVYLVRVQEDDNKTLRASEDQRGSGGTMDGVSGARLELVCHYRLHGNVES 536
NLVVTAANVLEVY VR+QED + + +RG+ +DG++GA LEL CHYRLHGNVE+
Sbjct: 56 NLVVTAANVLEVYAVRLQEDQQPKDASDDSRRGT--LLDGIAGASLELECHYRLHGNVET 113
Query: 537 MTILSLGADNHNNRRDSIMLAFQDAKITVLEYDDSSHGLRTSSMHCFEGPDWQYLKRGRE 716
M +LS+G + + +RDSI+L F DAKI+VLEYDDS HGLRTSS+HCFEGP+W +LKRGRE
Sbjct: 114 MAVLSIGGGDVSRKRDSIILTFADAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGRE 173
Query: 717 SFAKGPVIQADPLGRCSGVLIYGLQMIILKAAQVGQGLVGDDEPTTSGGAVSVRIESSYV 896
FA+GPV++ DP GRC GVLIY LQMIILKA QVG GLVGDD+ S GAV+ RIESSY+
Sbjct: 174 QFARGPVVKIDPQGRCGGVLIYDLQMIILKATQVGSGLVGDDDAFGSSGAVAARIESSYM 233
Query: 897 I 899
I
Sbjct: 234 I 234
>ref|XP_006490256.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
1-like isoform X2 [Citrus sinensis]
Length = 1457
Score = 303 bits (776), Expect = 6e-80
Identities = 153/244 (62%), Positives = 193/244 (79%), Gaps = 5/244 (2%)
Frame = +3
Query: 183 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERRVGPVPNL 362
MS+AA+KMMH TGI +C SGF+THS ++ P +IP I +++LDS E P +R +GPVPNL
Sbjct: 1 MSFAAYKMMHWPTGIANCGSGFITHSRADYVP-QIPLIQTEELDS-ELPSKRGIGPVPNL 58
Query: 363 VVTAANVLEVYLVRVQEDDNKTLRASEDQRGSGGT-----MDGVSGARLELVCHYRLHGN 527
VVTAANV+E+Y+VRVQE+ +K + + SG T MDG+S A LELVCHYRLHGN
Sbjct: 59 VVTAANVIEIYVVRVQEEGSK------ESKNSGETKRRVLMDGISAASLELVCHYRLHGN 112
Query: 528 VESMTILSLGADNHNNRRDSIMLAFQDAKITVLEYDDSSHGLRTSSMHCFEGPDWQYLKR 707
VES+ ILS G +++ RRDSI+LAF+DAKI+VLE+DDS HGLR +SMHCFE P+W +LKR
Sbjct: 113 VESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKR 172
Query: 708 GRESFAKGPVIQADPLGRCSGVLIYGLQMIILKAAQVGQGLVGDDEPTTSGGAVSVRIES 887
GRESFA+GP+++ DP GRC GVL+YGLQMIILKA+Q G GLVGD++ SGG S RIES
Sbjct: 173 GRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIES 232
Query: 888 SYVI 899
S+VI
Sbjct: 233 SHVI 236
>ref|XP_006490255.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
1-like isoform X1 [Citrus sinensis]
Length = 1458
Score = 303 bits (776), Expect = 6e-80
Identities = 153/244 (62%), Positives = 193/244 (79%), Gaps = 5/244 (2%)
Frame = +3
Query: 183 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERRVGPVPNL 362
MS+AA+KMMH TGI +C SGF+THS ++ P +IP I +++LDS E P +R +GPVPNL
Sbjct: 1 MSFAAYKMMHWPTGIANCGSGFITHSRADYVP-QIPLIQTEELDS-ELPSKRGIGPVPNL 58
Query: 363 VVTAANVLEVYLVRVQEDDNKTLRASEDQRGSGGT-----MDGVSGARLELVCHYRLHGN 527
VVTAANV+E+Y+VRVQE+ +K + + SG T MDG+S A LELVCHYRLHGN
Sbjct: 59 VVTAANVIEIYVVRVQEEGSK------ESKNSGETKRRVLMDGISAASLELVCHYRLHGN 112
Query: 528 VESMTILSLGADNHNNRRDSIMLAFQDAKITVLEYDDSSHGLRTSSMHCFEGPDWQYLKR 707
VES+ ILS G +++ RRDSI+LAF+DAKI+VLE+DDS HGLR +SMHCFE P+W +LKR
Sbjct: 113 VESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKR 172
Query: 708 GRESFAKGPVIQADPLGRCSGVLIYGLQMIILKAAQVGQGLVGDDEPTTSGGAVSVRIES 887
GRESFA+GP+++ DP GRC GVL+YGLQMIILKA+Q G GLVGD++ SGG S RIES
Sbjct: 173 GRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIES 232
Query: 888 SYVI 899
S+VI
Sbjct: 233 SHVI 236
>ref|XP_006421760.1| hypothetical protein CICLE_v10004147mg [Citrus clementina]
gi|557523633|gb|ESR35000.1| hypothetical protein
CICLE_v10004147mg [Citrus clementina]
Length = 1457
Score = 303 bits (776), Expect = 6e-80
Identities = 153/244 (62%), Positives = 193/244 (79%), Gaps = 5/244 (2%)
Frame = +3
Query: 183 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERRVGPVPNL 362
MS+AA+KMMH TGI +C SGF+THS ++ P +IP I +++LDS E P +R +GPVPNL
Sbjct: 1 MSFAAYKMMHWPTGIANCGSGFITHSRADYVP-QIPLIQTEELDS-ELPSKRGIGPVPNL 58
Query: 363 VVTAANVLEVYLVRVQEDDNKTLRASEDQRGSGGT-----MDGVSGARLELVCHYRLHGN 527
VVTAANV+E+Y+VRVQE+ +K + + SG T MDG+S A LELVCHYRLHGN
Sbjct: 59 VVTAANVIEIYVVRVQEEGSK------ESKNSGETKRRVLMDGISAASLELVCHYRLHGN 112
Query: 528 VESMTILSLGADNHNNRRDSIMLAFQDAKITVLEYDDSSHGLRTSSMHCFEGPDWQYLKR 707
VES+ ILS G +++ RRDSI+LAF+DAKI+VLE+DDS HGLR +SMHCFE P+W +LKR
Sbjct: 113 VESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKR 172
Query: 708 GRESFAKGPVIQADPLGRCSGVLIYGLQMIILKAAQVGQGLVGDDEPTTSGGAVSVRIES 887
GRESFA+GP+++ DP GRC GVL+YGLQMIILKA+Q G GLVGD++ SGG S RIES
Sbjct: 173 GRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIES 232
Query: 888 SYVI 899
S+VI
Sbjct: 233 SHVI 236
>ref|XP_006421759.1| hypothetical protein CICLE_v10004147mg [Citrus clementina]
gi|557523632|gb|ESR34999.1| hypothetical protein
CICLE_v10004147mg [Citrus clementina]
Length = 1458
Score = 303 bits (776), Expect = 6e-80
Identities = 153/244 (62%), Positives = 193/244 (79%), Gaps = 5/244 (2%)
Frame = +3
Query: 183 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPINSDDLDSSEWPGERRVGPVPNL 362
MS+AA+KMMH TGI +C SGF+THS ++ P +IP I +++LDS E P +R +GPVPNL
Sbjct: 1 MSFAAYKMMHWPTGIANCGSGFITHSRADYVP-QIPLIQTEELDS-ELPSKRGIGPVPNL 58
Query: 363 VVTAANVLEVYLVRVQEDDNKTLRASEDQRGSGGT-----MDGVSGARLELVCHYRLHGN 527
VVTAANV+E+Y+VRVQE+ +K + + SG T MDG+S A LELVCHYRLHGN
Sbjct: 59 VVTAANVIEIYVVRVQEEGSK------ESKNSGETKRRVLMDGISAASLELVCHYRLHGN 112
Query: 528 VESMTILSLGADNHNNRRDSIMLAFQDAKITVLEYDDSSHGLRTSSMHCFEGPDWQYLKR 707
VES+ ILS G +++ RRDSI+LAF+DAKI+VLE+DDS HGLR +SMHCFE P+W +LKR
Sbjct: 113 VESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKR 172
Query: 708 GRESFAKGPVIQADPLGRCSGVLIYGLQMIILKAAQVGQGLVGDDEPTTSGGAVSVRIES 887
GRESFA+GP+++ DP GRC GVL+YGLQMIILKA+Q G GLVGD++ SGG S RIES
Sbjct: 173 GRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIES 232
Query: 888 SYVI 899
S+VI
Sbjct: 233 SHVI 236
>gb|EEC76888.1| hypothetical protein OsI_15095 [Oryza sativa Indica Group]
Length = 1503
Score = 303 bits (775), Expect = 7e-80
Identities = 156/244 (63%), Positives = 187/244 (76%), Gaps = 5/244 (2%)
Frame = +3
Query: 183 MSYAAFKMMHLATGIEHCASGFVTHSPSNS----TPAEIPPINSDDLDSSEWPGE-RRVG 347
MSYAA+KMMH TG++HCA+GFVTHSPS++ T A + P D+DS+ RR+G
Sbjct: 1 MSYAAYKMMHWPTGVDHCAAGFVTHSPSDAAAFFTAATVGPGPEGDIDSAAAASRPRRLG 60
Query: 348 PVPNLVVTAANVLEVYLVRVQEDDNKTLRASEDQRGSGGTMDGVSGARLELVCHYRLHGN 527
P PNLVV AANVLEVY VR + ++ SG +DG+SGARLELVC+YRLHGN
Sbjct: 61 PSPNLVVAAANVLEVYAVRAETAAEDGGGGTQPSSSSGAVLDGISGARLELVCYYRLHGN 120
Query: 528 VESMTILSLGADNHNNRRDSIMLAFQDAKITVLEYDDSSHGLRTSSMHCFEGPDWQYLKR 707
+ESMT+LS GA+N RR +I LAF+DAKIT LE+DD+ HGLRTSSMHCFEGP+WQ+LKR
Sbjct: 121 IESMTVLSDGAEN---RRATIALAFKDAKITCLEFDDAIHGLRTSSMHCFEGPEWQHLKR 177
Query: 708 GRESFAKGPVIQADPLGRCSGVLIYGLQMIILKAAQVGQGLVGDDEPTTSGGAVSVRIES 887
GRESFA GPVI+ADPLGRC L YGLQMIILKAAQVG LVG+DEPT + + +VRIES
Sbjct: 178 GRESFAWGPVIKADPLGRCGAALAYGLQMIILKAAQVGHSLVGEDEPTCALSSTAVRIES 237
Query: 888 SYVI 899
SY+I
Sbjct: 238 SYLI 241
>ref|XP_004514987.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
1-like [Cicer arietinum]
Length = 1447
Score = 302 bits (773), Expect = 1e-79
Identities = 153/242 (63%), Positives = 189/242 (78%), Gaps = 3/242 (1%)
Frame = +3
Query: 183 MSYAAFKMMHLATGIEHCASGFVTHSPSNSTPAEIPPI---NSDDLDSSEWPGERRVGPV 353
MS+AA+KMM TGI++CASGF+THS S+STP IPPI + DD+DS P R + P+
Sbjct: 1 MSFAAYKMMQWPTGIQNCASGFLTHSRSDSTP-RIPPIQHNDDDDIDSDWVPQPRDLAPL 59
Query: 354 PNLVVTAANVLEVYLVRVQEDDNKTLRASEDQRGSGGTMDGVSGARLELVCHYRLHGNVE 533
PNLV+TAAN+LEVY VR+Q+D K+ S D R +DG++GA LELVCHYRLHGNVE
Sbjct: 60 PNLVITAANILEVYTVRIQQDPPKS---SADPR----VLDGLAGASLELVCHYRLHGNVE 112
Query: 534 SMTILSLGADNHNNRRDSIMLAFQDAKITVLEYDDSSHGLRTSSMHCFEGPDWQYLKRGR 713
S+ +LS+G + + RRDSI+L F+DAKI+VLEYDDS HGLRTSS+HCFEGP+W +LKRGR
Sbjct: 113 SVAVLSVGGGDASRRRDSIILTFKDAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGR 172
Query: 714 ESFAKGPVIQADPLGRCSGVLIYGLQMIILKAAQVGQGLVGDDEPTTSGGAVSVRIESSY 893
E FA+GPV + DP GRC GVL+Y LQMIILK Q G GLVG+D+ SGGAV+ RIESSY
Sbjct: 173 EHFARGPVAKVDPQGRCGGVLVYDLQMIILKTTQAGSGLVGEDDVLGSGGAVAARIESSY 232
Query: 894 VI 899
+I
Sbjct: 233 MI 234