BLASTX nr result
ID: Zingiber23_contig00004933
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00004933
(3481 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V... 1242 0.0
gb|EAY94464.1| hypothetical protein OsI_16234 [Oryza sativa Indi... 1206 0.0
gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nico... 1205 0.0
ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis... 1205 0.0
ref|XP_004978058.1| PREDICTED: probable RNA-dependent RNA polyme... 1204 0.0
ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 1201 0.0
ref|XP_002446635.1| hypothetical protein SORBIDRAFT_06g019330 [S... 1201 0.0
sp|Q7XM31.1|RDR2_ORYSJ RecName: Full=Probable RNA-dependent RNA ... 1200 0.0
ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 1193 0.0
ref|NP_001183867.1| RNA-dependent DNA polymerase [Zea mays] gi|8... 1192 0.0
gb|EOY20662.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobro... 1190 0.0
gb|EMJ12511.1| hypothetical protein PRUPE_ppa000513mg [Prunus pe... 1186 0.0
ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 1174 0.0
ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Popu... 1174 0.0
ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 1173 0.0
ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 1173 0.0
gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis] 1172 0.0
ref|XP_003579930.1| PREDICTED: probable RNA-dependent RNA polyme... 1164 0.0
gb|ADU04145.1| hypothetical protein [Gossypium hirsutum] 1162 0.0
gb|ADU04140.1| hypothetical protein [Gossypium hirsutum] 1160 0.0
>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
gi|297733815|emb|CBI15062.3| unnamed protein product
[Vitis vinifera]
Length = 1127
Score = 1242 bits (3214), Expect = 0.0
Identities = 641/1120 (57%), Positives = 811/1120 (72%), Gaps = 18/1120 (1%)
Frame = +1
Query: 43 RATLHVSNIPHTAVAAELFDYFDASVG--SVYACKIATARRNWKSKGFGRVQFDTFAAAE 216
R T+ VSNIP TA+A EL+ + ++ +G ++YA +IAT +NWKS+GFGRVQF+T A
Sbjct: 6 RPTVKVSNIPKTAIAKELWSFLESKLGPNTIYALEIATEHKNWKSRGFGRVQFETLQAKR 65
Query: 217 RARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEA 396
A LL +G L +F+ + L++S + +DI+VR E +N++++ LH G LV + M + E+
Sbjct: 66 AADLLSLQGDL-VFRGSSLSISATFDDIIVRPVEPRNQVDSGVLHVGFLVEDDCMLVLES 124
Query: 397 WEQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRE--SILLQLQYAPR 570
WE V+ +MPER ++E +VD GE+YKLEV F D+LESS+CCL G + ++LL+L+YAP+
Sbjct: 125 WEGVKTLVMPERNRVEFWVDKDGERYKLEVPFDDVLESSACCLGGGKVNALLLKLKYAPK 184
Query: 571 CFVRIHG---LEKESNDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCAE 741
F + G K S DR+ + +ED +FLW+RTTDFS S+G+S +C ++ +G +
Sbjct: 185 IFQKFAGPNIASKFSADRYHISKEDAEFLWLRTTDFSSIKSLGQSTSFCWEIKEGFPALD 244
Query: 742 ILRKLPFSRALGEXXXXXXXXXXXXXXXXXXXXXDCS--VPYEILYQINSLVHMQKITFR 915
I P+ + L E + + YEIL+Q+NSLVH QKI+
Sbjct: 245 IFASFPYYKDLTELTLEQGEGFCSDSGLVPLVKCESGPKLAYEILFQLNSLVHAQKISLA 304
Query: 916 QVTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRS--STSPFSKSI 1089
V DL +IL LP D AI IL K+HK ST YDP+ FIK + I + + P S S
Sbjct: 305 AVDTDLIEILSNLPVDTAIMILQKLHKRKSTRYDPISFIKAQAHIINMNIKNLPPSSHSR 364
Query: 1090 IAQN-MMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPSDA 1266
+ N +MSC+RVLVTPS+IYCLGPELE SNYVVKH++A+ASDF+RV+FV+EDWSKLPS+A
Sbjct: 365 LTNNNVMSCHRVLVTPSKIYCLGPELESSNYVVKHYAAYASDFVRVSFVEEDWSKLPSNA 424
Query: 1267 ISAKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASNDN 1446
+S I F++PFRT IY RILSILR+G+ I +K+F+FLAFSASQLRSNSVWMFASND
Sbjct: 425 LSMSIRKAFFADPFRTEIYHRILSILREGIVIGAKRFQFLAFSASQLRSNSVWMFASNDK 484
Query: 1447 LTAESIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGKKY 1626
+ + IR+WMG F IRSVSKCAARMGQLFSSS+QT+ E+T+ DG Y
Sbjct: 485 VRVDDIREWMGCFKKIRSVSKCAARMGQLFSSSVQTLPVPVQDVEVIPDIEVTS-DGFGY 543
Query: 1627 CFSDGIGKISLPFARQIAQKCGLSNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRSMLKF 1806
CFSDGIGKISL FA+Q+AQKCGL TPSAFQIRYGGYKGVI DR SF KLSLR SMLKF
Sbjct: 544 CFSDGIGKISLSFAKQVAQKCGLHQTPSAFQIRYGGYKGVIAVDRNSFRKLSLRSSMLKF 603
Query: 1807 ESANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEIAL 1986
ES N ML+VTKWSE PC+LNREIV LLSTLGV+DE FE++ ++QM LLDKMLT+ + AL
Sbjct: 604 ESQNRMLNVTKWSESTPCYLNREIVSLLSTLGVEDENFEALLNEQMHLLDKMLTNRQAAL 663
Query: 1987 RVLDTLSGPDIRTAV-KMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGRVL 2163
VL+++ G D + + KML+QGY+PN EPYL MML+A+RE QL DIR++CRIFVPK RVL
Sbjct: 664 DVLESMGGIDNKNILAKMLLQGYEPNVEPYLSMMLQAYRESQLSDIRTRCRIFVPKARVL 723
Query: 2164 IGCLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLHPGD 2343
IGCLDET +L+YGQVY++VTMTK E + N +F + D T+ ++GKV+VTKNPCLHPGD
Sbjct: 724 IGCLDETGILNYGQVYVRVTMTKAEHKCRNQSFFQKVDDTTSVVIGKVIVTKNPCLHPGD 783
Query: 2344 IRVLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPETDA 2523
IRVL AVY+ ++ GLVDC++FPQKG+RPHPNECSGGDLDGD +F+CWDE LIP +T+A
Sbjct: 784 IRVLDAVYEVELEEKGLVDCILFPQKGERPHPNECSGGDLDGDQFFICWDEGLIPSQTEA 843
Query: 2524 PMDYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKCLEL 2703
PMDYT RPRIMDHDV LEEIQK+FV+YMIND LG IST HLV+AD EP KAR KCLEL
Sbjct: 844 PMDYTSRRPRIMDHDVTLEEIQKFFVDYMINDTLGVISTAHLVHADREPEKARSKKCLEL 903
Query: 2704 ANLHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYHEDL 2883
A LHSMAVDFAKTGAPAEMPR L+PK FPDFMER +KPM+ S G +GKLYRA + +
Sbjct: 904 ATLHSMAVDFAKTGAPAEMPRVLKPKEFPDFMERVDKPMYISNGALGKLYRATIASRVNE 963
Query: 2884 NSETITSQWV----YDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEILTG 3051
S + S + YD+DL V + YAEK+ +LMN+YGAE EDE+LTG
Sbjct: 964 KSSFVWSGTIPGAAYDHDLEVDGFETFLEIAKLHKEMYAEKMATLMNFYGAESEDEMLTG 1023
Query: 3052 NLRNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWYQVTYH 3231
NLRNK YLQ+D +R+ EMKDR+LI VK+L++E W SC KMASAWY VTYH
Sbjct: 1024 NLRNKLMYLQRDNRRFTEMKDRILISVKSLQKEAKEWLYGSCKPHQHQKMASAWYHVTYH 1083
Query: 3232 PDYRPET-RFLSFPWIVSDVLLRIKAARARKS*MSWQVCV 3348
+ +T FLSFPWIV +VLL IK+A +RK+ S C+
Sbjct: 1084 STFSSQTPNFLSFPWIVGEVLLVIKSANSRKAETSKDNCI 1123
>gb|EAY94464.1| hypothetical protein OsI_16234 [Oryza sativa Indica Group]
Length = 1136
Score = 1206 bits (3120), Expect = 0.0
Identities = 633/1111 (56%), Positives = 779/1111 (70%), Gaps = 19/1111 (1%)
Frame = +1
Query: 34 ADVRATLHVSNIPHTAVAAELFDYFDASV---GSVYACKIATARRNWKSKGFGRVQFDTF 204
A A+L VSNIP +AVAAEL +FD++V G +AC+IA A R W S+G G VQF +
Sbjct: 6 AAATASLRVSNIPPSAVAAELLAFFDSAVAGAGGAFACEIAAAHRGWLSRGHGTVQFGSA 65
Query: 205 AAAERARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHME 384
AAA A L GRLP F A L+VSPS D++ RAS+ R A L G V E E
Sbjct: 66 AAAAAAAGLASSGRLPRFLGALLSVSPSPVDLLPRASDLSLRAAGAGLVVGDRVAERVFE 125
Query: 385 IFEAWEQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRESILLQLQYA 564
+AW+ VR E++P +++++L++++ ++YKLEVLF D+ + C LDG +ILLQL YA
Sbjct: 126 AADAWDGVRAEVIPGKRRVDLYLEHDPQRYKLEVLFEDMKDCLGCTLDGMGAILLQLNYA 185
Query: 565 PRCFVRIHGLEKES---NDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSC 735
PR I G S +DRF C+ED +F WVR DF+PN S G+ L+L
Sbjct: 186 PRIHTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGKSALV 245
Query: 736 AEILRKLPFSRALGEXXXXXXXXXXXXXXXXXXXXX--DCSVPYEILYQINSLVHMQKIT 909
++IL+ LPFS LGE D SVPYE+L+++NSL+HM KI
Sbjct: 246 SDILKSLPFSGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKIV 305
Query: 910 FRQVTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTSPFSKSI 1089
+ V DLF L+ LP DV+ +I KMHKL STCY+P+QFI+ E +KRS S
Sbjct: 306 AKHVNADLFKALQELPVDVSRRIFEKMHKLESTCYEPLQFIQQEAYSMKRSHNVLLSNEG 365
Query: 1090 IAQN---MMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPS 1260
+ +M CYRV +TPS+I+CLGPE E +NYVVKH SA+ASDF+RVTFVDEDWSKL S
Sbjct: 366 EGEGERKLMKCYRVNITPSKIFCLGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSS 425
Query: 1261 DAISAKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASN 1440
+AISA+I+ G FS+PF+T +Y RILSIL+ G I K FEFLAFSASQLR NSVWMFASN
Sbjct: 426 NAISARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASN 485
Query: 1441 DNLTAESIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGK 1620
+L A IR+WMGHF IRSVSKCAARMGQLFSSS QT EITT DG
Sbjct: 486 ASLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITT-DGS 544
Query: 1621 KYCFSDGIGKISLPFARQIAQKCGL--SNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRS 1794
KY FSDGIGKISL FA+++A GL +N PSAFQIRYGGYKGVI D S LSLR S
Sbjct: 545 KYIFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLRPS 604
Query: 1795 MLKFESANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDT 1974
M KFES + ML++T WS+ QPC++NREI+ LLSTLG++DEIF +MQ D+M+ ++MLT+
Sbjct: 605 MKKFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNK 664
Query: 1975 EIALRVLDTLSGPDIRTAVKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKG 2154
E+AL VL L G + +TAVKML+QGY+P+SEPYL M+LKAH+E +L DIR++C+I VPKG
Sbjct: 665 EVALSVLGKLGGSETKTAVKMLLQGYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKG 724
Query: 2155 RVLIGCLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLH 2334
RVLIGCLDET VL+YGQVYI++T +E + N ++ N D TAT+VGKV +TKNPCLH
Sbjct: 725 RVLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNPCLH 784
Query: 2335 PGDIRVLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPE 2514
PGDIRVL+A+YDP D +G+VDCL+FPQ+G+RPHPNECSGGDLDGDLYF+ WD+ LIP +
Sbjct: 785 PGDIRVLEAIYDP--DLVGMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEK 842
Query: 2515 TDAPMDYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKC 2694
D PMDYT TRPRIMDH V LEEIQK+FV+YMIND+LGAIST HL++AD P KAR +C
Sbjct: 843 VDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPEC 902
Query: 2695 LELANLHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYH 2874
L+LA LHSMAVDFAKTGAPAEMPR LRP+ +PDFMER+EKPM+ S GV+GKLYR+A +
Sbjct: 903 LQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHM 962
Query: 2875 ED------LNSETITSQWVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHED 3036
E L+S + YD DL V YY Y EKL +LMNYY AEHED
Sbjct: 963 EKSGDSGALSSSSAQPSPTYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAEHED 1022
Query: 3037 EILTGNLRNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWY 3216
EILTGN+RNK YL++D KRY EMKDR++ V L E GW S E+D +MASAWY
Sbjct: 1023 EILTGNIRNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWLLSSRKEEDASRMASAWY 1082
Query: 3217 QVTYHPDYRPETRFLSFPWIVSDVLLRIKAA 3309
+VTYHPD R RF SFPWI D LL IKA+
Sbjct: 1083 RVTYHPDRRRGKRFWSFPWIACDNLLAIKAS 1113
>gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
Length = 1120
Score = 1205 bits (3118), Expect = 0.0
Identities = 623/1116 (55%), Positives = 793/1116 (71%), Gaps = 22/1116 (1%)
Frame = +1
Query: 40 VRATLHVSNIPHTAVAAELFDYFDASVG--SVYACKIATARRNWKSKGFGRVQFDTFAAA 213
V AT+ VSNIP TA+A +LFD+F++S+G SV+AC I + +NWKS+G GRVQF+T +
Sbjct: 7 VTATVRVSNIPQTAIAKQLFDFFESSIGKGSVFACDIFSEHKNWKSRGHGRVQFETSQSK 66
Query: 214 ERARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFE 393
++ L ++G+L +F+ +L ++ S +DI+ R E R + LH G+L+ +ME+ E
Sbjct: 67 LQSLSLSEQGKL-VFKGHQLILTSSFDDIIARPIELNYRFQKGILHTGILLENDYMEVLE 125
Query: 394 AWEQVRVEIMPERKKLELFVDYG-GEKYKLEVLFGDILESSSCCL-DGRESILLQLQYAP 567
WE V+ IMPERK LE +V + GE Y+LEV FGDI+E+ C L D + ++LL+L++AP
Sbjct: 126 TWENVKTLIMPERKSLEFWVSHAKGECYRLEVQFGDIIETCECSLEDEKTALLLKLKHAP 185
Query: 568 RCFVRIHG---LEKESNDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCA 738
+ + R+ G K S+DR+ VC ED +FLWVRTTDFS SIG S C ++ DGL +
Sbjct: 186 KLYQRVSGPGVASKFSSDRYHVCEEDCEFLWVRTTDFSAMKSIGCSSSPCWEIEDGLLSS 245
Query: 739 EILRKLPFSR------ALGEXXXXXXXXXXXXXXXXXXXXXDCSVPYEILYQINSLVHMQ 900
++L LP+ L E D +PYEIL+Q+NSL+H
Sbjct: 246 DLLSGLPYCNNDVMDLVLDEVGDIYSASELVPLASFPS---DLKLPYEILFQLNSLIHTH 302
Query: 901 KITFRQVTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTSPFS 1080
KI+ V DL ++L L D A+ IL KMHKL STC++PV FIK L + ++S + S
Sbjct: 303 KISLGAVKTDLIEVLSKLELDTAMMILQKMHKLQSTCFEPVPFIKTRLHVLGKNSKNQPS 362
Query: 1081 KS---IIAQNMMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSK 1251
S ++ QNMMS +RVLVTPS++YCLGPELE SNY+VK+F+ HASDFLRVTFV+EDW K
Sbjct: 363 SSYSRLVNQNMMSVHRVLVTPSKVYCLGPELETSNYIVKNFALHASDFLRVTFVEEDWGK 422
Query: 1252 LPSDAISAKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMF 1431
L +AIS ++ G+F++P+RT IY RILSILRDGL I SK+F FLAFSASQLRSNSVWMF
Sbjct: 423 LSPNAISMSVEQGIFAKPYRTKIYHRILSILRDGLVIGSKRFLFLAFSASQLRSNSVWMF 482
Query: 1432 ASNDNLTAESIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTE 1611
ASN+++ AE IR+WMG FN IRSVSKCAARMGQLFS+S QTM E+T+
Sbjct: 483 ASNEHVKAEDIREWMGCFNKIRSVSKCAARMGQLFSTSFQTMEVQSPHVEILPDIEVTS- 541
Query: 1612 DGKKYCFSDGIGKISLPFARQIAQKCGLSNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRR 1791
DG YCFSDGIGKIS FA Q+AQKCGLS TPSAFQIRYGGYKGVI DR SF KLSLR
Sbjct: 542 DGVSYCFSDGIGKISQAFASQVAQKCGLSYTPSAFQIRYGGYKGVIAVDRNSFRKLSLRG 601
Query: 1792 SMLKFESANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTD 1971
SMLKFES N ML++TKWS+ PC+LNREIV LLSTLGV+D++FE + + + LL KMLT
Sbjct: 602 SMLKFESKNRMLNITKWSDAMPCYLNREIVILLSTLGVEDKVFEDLLDNHLHLLGKMLTT 661
Query: 1972 TEIALRVLDTLSGPDIRTAV-KMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVP 2148
E AL VL+++ G D++ + +ML QGY PN EPYL MML++H E QL D+RS+CRIF+
Sbjct: 662 NEAALDVLESIGGGDVKKILMRMLHQGYAPNLEPYLSMMLQSHFENQLSDLRSRCRIFIH 721
Query: 2149 KGRVLIGCLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPC 2328
KGRVL+GCLDET +L+YGQVY ++TMTK ELQ +F + D+ TA + G V+VTKNPC
Sbjct: 722 KGRVLVGCLDETGILNYGQVYARITMTKAELQSAQQSFFQKVDETTAVVRGNVVVTKNPC 781
Query: 2329 LHPGDIRVLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIP 2508
LHPGD+RVL+AVY+ ++ VDC+IFPQKG+RPHPNECSGGDLDGDLYF+ WDENLIP
Sbjct: 782 LHPGDVRVLEAVYEVALEEKAWVDCIIFPQKGERPHPNECSGGDLDGDLYFISWDENLIP 841
Query: 2509 PETDAPMDYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCS 2688
+T PMDYT R RIMDH+V L+EIQ++FV+YMI+D LGAIST HLV+AD EP KA
Sbjct: 842 RQTVTPMDYTGRRTRIMDHEVTLQEIQRFFVDYMISDTLGAISTAHLVHADREPDKALNP 901
Query: 2689 KCLELANLHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASS 2868
KCL+LA LHSMAVDFAKTGA AEMPR L+P+ FPDF+ER++KPM+ S GV+GKLYRA +
Sbjct: 902 KCLQLATLHSMAVDFAKTGAAAEMPRFLKPREFPDFLERWDKPMYISEGVLGKLYRAIVN 961
Query: 2869 YHEDLNSETITS----QWVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHED 3036
NS+ + S Q YD+ LL + Y +++ SL+NYYGAE E
Sbjct: 962 SSVRSNSDDLGSVRAIQDAYDHALLFDGYEAFIETAKNHKETYLDRMNSLLNYYGAEKEV 1021
Query: 3037 EILTGNLRNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWY 3216
EILTGNLR KS YLQ+D +RY E+KDR+L+ K+L++EV GWF C E + K+ASAWY
Sbjct: 1022 EILTGNLRQKSVYLQRDNRRYFELKDRILVSAKSLQKEVKGWFTGCCKEDEHKKLASAWY 1081
Query: 3217 QVTYHPDY-RPETRFLSFPWIVSDVLLRIKAARARK 3321
VTYHP Y L FPW+V D+LL IK RK
Sbjct: 1082 HVTYHPSYCEGSANCLGFPWVVGDILLDIKLHNTRK 1117
>ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis sativus]
gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase
2 [Cucumis sativus]
Length = 1117
Score = 1205 bits (3117), Expect = 0.0
Identities = 618/1111 (55%), Positives = 789/1111 (71%), Gaps = 18/1111 (1%)
Frame = +1
Query: 43 RATLHVSNIPHTAVAAELFDYFDASVG--SVYACKIATARRNWKSKGFGRVQFDTFAAAE 216
R+TL VSN+P +A+A +L ++ ++ +G SV+A +I T R+NWKS+G GRVQF T A
Sbjct: 6 RSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTTLEAKA 65
Query: 217 RARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEA 396
+A L + L +F L S ++DIVVR NR E LH G ++ E M + E+
Sbjct: 66 KAMSLSVQNSL-VFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMSVLES 124
Query: 397 WEQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRE--SILLQLQYAPR 570
WE V+ IMPER+++E ++ + E YKLEV+F +ILE++ CL + ++LL+L+YAPR
Sbjct: 125 WEGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGHCLGEEKLNALLLKLKYAPR 184
Query: 571 CFVRIHG---LEKESNDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCAE 741
+ +I G + S+ R+R+C ED +LWVRTT+FSP S+G+S +C ++ + L ++
Sbjct: 185 IYKKISGSNMASRFSSTRYRLCIEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDLQASD 244
Query: 742 ILRKLPFSRALGEXXXXXXXXXXXXXXXXXXXXXD---CSVPYEILYQINSLVHMQKITF 912
I PF + + ++ YE+ YQ+NSLVHMQKI+
Sbjct: 245 IFSCFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQKISL 304
Query: 913 RQVTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTS--PFSKS 1086
DL D L L D A+ +L ++H+L CYDP+ F+K +L KR+ S P S+
Sbjct: 305 SAANQDLIDFLCTLDIDTALNVLQRLHQLKFVCYDPLSFLKTQLHVYKRNCKSLPPSSQK 364
Query: 1087 IIAQNMMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPSDA 1266
++ N+M+CYRVLVTPSRIYCLGPELE SNYVVK+FS++ASDF+RVTFV+EDWSKLP+ A
Sbjct: 365 RLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKLPAGA 424
Query: 1267 ISAKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASNDN 1446
++ I G+ S+P+RT IY RI+++LRDG+ I +K+FEFLAFSASQLRSNSVWMFAS+DN
Sbjct: 425 VTTSIQRGILSKPYRTEIYHRIMTVLRDGIVIGAKRFEFLAFSASQLRSNSVWMFASSDN 484
Query: 1447 LTAESIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGKKY 1626
L AE IR+WMG F IRS+SKCAARMGQLFSSS QT+ E+ T DG Y
Sbjct: 485 LKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTRDVEIIPDIEVNT-DGIDY 543
Query: 1627 CFSDGIGKISLPFARQIAQKCGLSNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRSMLKF 1806
CFSDGIGKISL FARQ+A KCG+++ PSAFQIRYGGYKGVI DR SF KLSLR SMLKF
Sbjct: 544 CFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSMLKF 603
Query: 1807 ESANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEIAL 1986
ES N ML+VTK + PC+LNREI LLSTLGVKDE FE++Q +Q+ LL +MLTD ++AL
Sbjct: 604 ESKNKMLNVTKCCDSMPCYLNREIATLLSTLGVKDESFEALQQEQLHLLKRMLTDKDVAL 663
Query: 1987 RVLDTLSGPDIRTA-VKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGRVL 2163
VL+ G D V+ML GY+PN EPYL MML+AH D+RS+CRIFVPKGR+L
Sbjct: 664 NVLENFHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRIL 723
Query: 2164 IGCLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLHPGD 2343
+GCLDET +L+YGQVY +T+TK ELQ N N+ D+ + ++GKV+VTKNPCLHPGD
Sbjct: 724 LGCLDETGILNYGQVYACITLTKSELQSRNQNYFHTIDETKSILLGKVVVTKNPCLHPGD 783
Query: 2344 IRVLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPETDA 2523
+RVL+A++ ++ GLVDCLIFPQKG RPH NECSGGDLDGDLYF+ WDENLIPP+T+A
Sbjct: 784 VRVLEAIFHVELEEKGLVDCLIFPQKGARPHTNECSGGDLDGDLYFISWDENLIPPKTEA 843
Query: 2524 PMDYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKCLEL 2703
PMDYT RPRIMDHDVKLEEIQK+FV+YMIND LGAIST HLV+AD EP KA +KCLEL
Sbjct: 844 PMDYTGRRPRIMDHDVKLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSAKCLEL 903
Query: 2704 ANLHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYHEDL 2883
A LHSMAVDFAKTGAPAEMPR L+P+ FPDFMERF+KPM+ S V+GKLYRAA E
Sbjct: 904 AALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGKLYRAAVKSIEQE 963
Query: 2884 NSETITSQ----WVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEILTG 3051
S + S+ +YDYDL V Y Y EK+ LMNYYGAE+EDEIL G
Sbjct: 964 RSRLVWSEEAARAIYDYDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYGAEYEDEILMG 1023
Query: 3052 NLRNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWYQVTYH 3231
+LR++++YLQ+D ++YG+MKDR+L+ VKNL++EV WF+ SC + MASAWY VTYH
Sbjct: 1024 DLRSRASYLQRDNRKYGDMKDRILLSVKNLRKEVKEWFENSCDPLNRRMMASAWYHVTYH 1083
Query: 3232 PDYRPETRF-LSFPWIVSDVLLRIKAARARK 3321
P Y E F SFPW VSDVLL IKA +++
Sbjct: 1084 PSYFKEDMFYFSFPWAVSDVLLNIKAMNSKR 1114
>ref|XP_004978058.1| PREDICTED: probable RNA-dependent RNA polymerase 2-like [Setaria
italica]
Length = 1130
Score = 1204 bits (3115), Expect = 0.0
Identities = 632/1105 (57%), Positives = 779/1105 (70%), Gaps = 16/1105 (1%)
Frame = +1
Query: 46 ATLHVSNIPHTAVAAELFDYFDASVGS--VYACKIATARRNWKSKGFGRVQFDTFAAAER 219
AT+ VSNIP +A+AAEL +FD++V + +AC+IA A R W S+G G VQFD+ AAA R
Sbjct: 14 ATVRVSNIPPSAIAAELLAFFDSAVATDAAFACEIAAAHRGWLSRGHGSVQFDSAAAATR 73
Query: 220 ARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEAW 399
A L GRLP F +RL+VSP+H D++ RA + R ++L G V E +E+ AW
Sbjct: 74 AVDLASSGRLPPFLGSRLSVSPAHVDLLPRAPDFALRALGSSLVVGNRVAERELEVAYAW 133
Query: 400 EQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRESILLQLQYAPRCFV 579
+ VR EI+P +++++L++ + YKLEVLF DI E C DG +ILLQL YAPR
Sbjct: 134 DGVRAEIIPAKRRVDLYLKHDSRSYKLEVLFEDIRECFGCSFDGTGAILLQLTYAPRIHT 193
Query: 580 RIHGLEKES---NDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCAEILR 750
I G +S ++ F C+ED +F WVR DF+PN S G+ L+LS G ++IL
Sbjct: 194 AISGSTIKSRFTDEHFHACKEDAKFAWVRALDFTPNSSFGECSTLVLKLSKGAPVSDILE 253
Query: 751 KLPFSRALGEXXXXXXXXXXXXXXXXXXXXXDC----SVPYEILYQINSLVHMQKITFRQ 918
LPFS LGE DC SVPYEIL+++NSLVHM K+ R
Sbjct: 254 SLPFSGELGELAISSMDMFGSSSKVVPLV--DCPSGFSVPYEILFRLNSLVHMGKLVARH 311
Query: 919 VTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTSPFSKSIIAQ 1098
V DLF +L+ LP +I K+ KL STCY+P++FI+ E R+K S + SK +
Sbjct: 312 VNADLFKVLEDLPIGTLRRIFEKVSKLKSTCYEPLEFIRHEAHRMKISKKTLLSKKGEGE 371
Query: 1099 N-MMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPSDAISA 1275
++ CYR+ +TPS+IYCLGPE E SNYVVK+ S +ASDF RVTFVDEDWSKL +A+SA
Sbjct: 372 GKLLRCYRIHITPSKIYCLGPEEEVSNYVVKYHSQYASDFARVTFVDEDWSKLSPNALSA 431
Query: 1276 KIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASNDNLTA 1455
+I+ G FS P +T +Y RILSIL++G I KK+EFLAFSASQLR NSVWMFASND+L+A
Sbjct: 432 RIEQGFFSTPLKTDLYHRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNDSLSA 491
Query: 1456 ESIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGKKYCFS 1635
ESIR+WMGHFN IRSVSKCAARMGQLFSSS QT E+TT DG KY FS
Sbjct: 492 ESIRRWMGHFNDIRSVSKCAARMGQLFSSSRQTFEVSSYDVEVIPDIEVTT-DGNKYIFS 550
Query: 1636 DGIGKISLPFARQIAQKCGL--SNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRSMLKFE 1809
DGIGKIS FARQIA+ GL +N PSAFQIRYGGYKGVI D SF+ LSLR SM KFE
Sbjct: 551 DGIGKISSRFARQIAKTIGLDPNNPPSAFQIRYGGYKGVIAVDPTSFYNLSLRPSMKKFE 610
Query: 1810 SANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEIALR 1989
S +TML++T WS+ QPC++NREI+ LLSTLG+KDEIF SMQ D M D+MLT+ E+AL
Sbjct: 611 SKSTMLNITNWSKSQPCYVNREIISLLSTLGIKDEIFLSMQQDDMHESDEMLTNKEVALS 670
Query: 1990 VLDTLSGPDIRTAVKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGRVLIG 2169
VL + G D + A +ML+QGY+P+SEPYLLM+LKAHR +L DIR++C+I V KGRVLIG
Sbjct: 671 VLGKIGGADTKIAAEMLLQGYEPSSEPYLLMILKAHRANRLTDIRTRCKIHVQKGRVLIG 730
Query: 2170 CLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLHPGDIR 2349
CLDETS LDYGQVYI++T ++E + F N D TA IVGKV ++KNPCLHPGD+R
Sbjct: 731 CLDETSKLDYGQVYIRITKNRKEQKYSEQPFFCNDDGKTAVIVGKVAISKNPCLHPGDVR 790
Query: 2350 VLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPETDAPM 2529
VL+A+YDP +D GLVDC++FPQ+G RPHPNECSGGDLDGDL+F+ WD+ LIP + DAPM
Sbjct: 791 VLEAIYDPGLDARGLVDCVVFPQRGDRPHPNECSGGDLDGDLFFITWDDKLIPEKVDAPM 850
Query: 2530 DYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKCLELAN 2709
DYT TRPRIMDH V LEEIQK+FV+YMIND LG IST HL++AD P KAR +CL+LA
Sbjct: 851 DYTATRPRIMDHVVTLEEIQKHFVSYMINDALGVISTAHLIHADRNPLKARSPECLQLAA 910
Query: 2710 LHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYHEDLNS 2889
LHSMAVDFAKTGAPAEMPRALRP+ FPDFMER+EKPM+ S GV+GKLYR+A + E N+
Sbjct: 911 LHSMAVDFAKTGAPAEMPRALRPREFPDFMERWEKPMYVSNGVLGKLYRSALRHAE--NA 968
Query: 2890 ETITSQW----VYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEILTGNL 3057
E + + YD DL +Y YAEKLG+LM YY AE EDEILTGN+
Sbjct: 969 EALLPEGPACSEYDPDLECPGFHDFLDAAEEHYEAYAEKLGTLMTYYSAEREDEILTGNI 1028
Query: 3058 RNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWYQVTYHPD 3237
RNK YL++D KRY EMKDR++ V L EEV GW + E+D K+ASAWY VTYHP
Sbjct: 1029 RNKLVYLRRDNKRYFEMKDRIIAAVDALHEEVRGWLRAR-REEDASKLASAWYHVTYHPC 1087
Query: 3238 YRPETRFLSFPWIVSDVLLRIKAAR 3312
R E RF SFPW+ D LL +KAAR
Sbjct: 1088 RRGEKRFWSFPWLACDTLLAVKAAR 1112
>ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum tuberosum]
Length = 1119
Score = 1201 bits (3107), Expect = 0.0
Identities = 612/1111 (55%), Positives = 792/1111 (71%), Gaps = 18/1111 (1%)
Frame = +1
Query: 46 ATLHVSNIPHTAVAAELFDYFDASVG--SVYACKIATARRNWKSKGFGRVQFDTFAAAER 219
AT+ VSNIP +A+A +LFD+FD+ +G SV+AC I + +NWKS+G GRVQF+T
Sbjct: 9 ATVRVSNIPQSAIAKDLFDFFDSLIGKGSVFACDIFSEHKNWKSRGHGRVQFETLQDKLH 68
Query: 220 ARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEAW 399
L ++G L LF+ +L++ S +DI+ R E + R + LH G+LV M++ E W
Sbjct: 69 CLSLSEQGNL-LFKGHQLSLVSSFDDIIARPVEPKCRFQDGILHTGLLVKNDVMQVLETW 127
Query: 400 EQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRES-ILLQLQYAPRCF 576
E V+ IMPERK LE +V + E Y+LEV FGD++E++ C L+ ++S +LL+L++AP+ +
Sbjct: 128 EDVKTLIMPERKCLEFWVSHAEECYRLEVQFGDVVEATVCSLENQKSALLLKLKHAPKLY 187
Query: 577 VRIHG---LEKESNDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCAEIL 747
R+ G K S DR+ +C+ED +FLWVRTTDFS SIG S C + DG +++L
Sbjct: 188 QRVSGPAVASKFSADRYHICKEDCEFLWVRTTDFSNIKSIGCSSSLCWETEDGWLSSDLL 247
Query: 748 RKLPFSRALG---EXXXXXXXXXXXXXXXXXXXXXDCSVPYEILYQINSLVHMQKITFRQ 918
LP + D +PYEIL+Q+NSLV QKI+
Sbjct: 248 SSLPCCNKDVIDLDLDKVGDIYSGSEFVPLVRIPSDLKLPYEILFQLNSLVQTQKISLGA 307
Query: 919 VTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTSPFSKS---I 1089
V DL ++L L D A+ IL KMHKL STC++P+ FIK L + +++ + S S +
Sbjct: 308 VNPDLIEVLSKLELDTAMMILQKMHKLQSTCFEPLTFIKTRLHVLGKNNKNQLSSSYSRL 367
Query: 1090 IAQNMMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPSDAI 1269
+ +MMS +RVLVTPS+IYCLGPELE SNY+VK+F+ HASDFLRVTFV+EDW KL +A+
Sbjct: 368 VNHSMMSVHRVLVTPSKIYCLGPELETSNYIVKNFAEHASDFLRVTFVEEDWGKLFPNAV 427
Query: 1270 SAKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASNDNL 1449
S ++ G+F++P+RT IY RILSILR+G+ I +K+F FLAFSASQLRSNSVWMFASN+ +
Sbjct: 428 SMSVEQGIFAKPYRTKIYHRILSILREGIVIGTKRFFFLAFSASQLRSNSVWMFASNEYV 487
Query: 1450 TAESIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGKKYC 1629
AE IR+WMG FN IRS+SKCAARMGQLFS+S+QTM E+T+ DG YC
Sbjct: 488 KAEDIREWMGCFNKIRSISKCAARMGQLFSTSVQTMEVQLQHVEILPDIEVTS-DGVSYC 546
Query: 1630 FSDGIGKISLPFARQIAQKCGLSNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRSMLKFE 1809
FSDGIGKIS FARQ+AQKCGL++TPSAFQIRYGGYKGVI DR SF KLSLR SMLKFE
Sbjct: 547 FSDGIGKISQAFARQVAQKCGLNHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFE 606
Query: 1810 SANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEIALR 1989
S N ML++TKWS+ PC+LNREIV LLSTLGV+D+ E + + ++LL KMLT E AL
Sbjct: 607 SKNRMLNITKWSDAMPCYLNREIVILLSTLGVEDKALEDLLDNHLRLLGKMLTTNEAALD 666
Query: 1990 VLDTLSGPDIRTAV-KMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGRVLI 2166
VL+++ G D++ + +ML+QGY PN EPYL MML++H E Q+ D+RS+CRIF+PKGR+L+
Sbjct: 667 VLESMGGGDVKKILMRMLLQGYAPNREPYLSMMLQSHFENQISDLRSRCRIFIPKGRILV 726
Query: 2167 GCLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLHPGDI 2346
GCLDET +L YG+VY+++TMTK ELQ NF + D+ TA + GKV+VTKNPCLHPGD+
Sbjct: 727 GCLDETGILKYGEVYVRITMTKAELQNGQQNFFQKVDETTAVVRGKVVVTKNPCLHPGDV 786
Query: 2347 RVLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPETDAP 2526
RVL+AVY+ ++ VDC+IFPQ G+RPHPNECSGGDLDGDLYF+CWDE+LIP +T P
Sbjct: 787 RVLEAVYEVTLEEKTWVDCIIFPQNGERPHPNECSGGDLDGDLYFICWDESLIPHQTVTP 846
Query: 2527 MDYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKCLELA 2706
MDYT RPRIMDH+V LEEIQ++FV+YMI+D LGAIST HLV+AD EP KA SKCL+LA
Sbjct: 847 MDYTGRRPRIMDHEVTLEEIQRFFVDYMISDTLGAISTAHLVHADREPDKALNSKCLQLA 906
Query: 2707 NLHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYHEDLN 2886
LHSMAVDFAKTGA AEMPR L+P+ FPDFMER++KPM+ S GV+GKLYR + N
Sbjct: 907 TLHSMAVDFAKTGAAAEMPRFLKPREFPDFMERWDKPMYISEGVLGKLYRGVIKSYIRRN 966
Query: 2887 SETITS----QWVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEILTGN 3054
S+ +++ Q YD+DLLV + Y + + SL+NYYGAE E EILTGN
Sbjct: 967 SDDLSTDRAIQDAYDHDLLVEGYEAFIETAKTHKEMYLDSMNSLLNYYGAEKEVEILTGN 1026
Query: 3055 LRNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWYQVTYHP 3234
LR KS YLQ+D +RY E+KDR+L+ K+L +EV GWF C E D K+ SAWY VTYHP
Sbjct: 1027 LRQKSVYLQRDNRRYFELKDRILVSAKSLHKEVKGWFSGCCTEDDHQKLVSAWYHVTYHP 1086
Query: 3235 DYRPET-RFLSFPWIVSDVLLRIKAARARKS 3324
Y E+ L FPW+V D+LL IK+ RK+
Sbjct: 1087 SYCHESANCLGFPWVVGDILLNIKSHNTRKT 1117
>ref|XP_002446635.1| hypothetical protein SORBIDRAFT_06g019330 [Sorghum bicolor]
gi|241937818|gb|EES10963.1| hypothetical protein
SORBIDRAFT_06g019330 [Sorghum bicolor]
Length = 1128
Score = 1201 bits (3106), Expect = 0.0
Identities = 630/1105 (57%), Positives = 772/1105 (69%), Gaps = 16/1105 (1%)
Frame = +1
Query: 46 ATLHVSNIPHTAVAAELFDYFDASV---GSVYACKIATARRNWKSKGFGRVQFDTFAAAE 216
AT+ V+NIP +A+AAEL +FD++V G+ +AC+IA A R W S+G G VQFD+ AAA
Sbjct: 12 ATVRVANIPASAIAAELLAFFDSAVTTTGAAFACEIAAAHRGWLSRGHGSVQFDSSAAAI 71
Query: 217 RARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEA 396
A L GRLP F + L+VSP+H D++ RA + R A L G V E +E +
Sbjct: 72 HAIDLASSGRLPPFLGSCLSVSPAHADLLPRAPDLSLRAADAGLILGNRVAERELEAAYS 131
Query: 397 WEQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRESILLQLQYAPRCF 576
W+ VR E++P +++++L++ YKLEVLF DI E C LDG +ILLQL YAPR +
Sbjct: 132 WDGVRAEVIPRKRRVDLYLKQDSRSYKLEVLFEDIRECFGCHLDGTGAILLQLTYAPRIY 191
Query: 577 VRIHGLEKES---NDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCAEIL 747
I G +S +DRF C+ED +F WVR DF+PN S G+ L+LS G+ ++IL
Sbjct: 192 TAISGSTVKSRFTDDRFHACKEDAKFAWVRALDFTPNNSFGECSTLVLKLSKGVPVSDIL 251
Query: 748 RKLPFSRALGEXXXXXXXXXXXXXXXXXXXXXDC----SVPYEILYQINSLVHMQKITFR 915
LPFS L E DC SVPYE+L+++NSLVHM K+ R
Sbjct: 252 ESLPFSGELEELAISSMLAFGSSSNVVPLV--DCPNGFSVPYEVLFRLNSLVHMGKLVAR 309
Query: 916 QVTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTSPFSKSIIA 1095
V DLF +L+ L D +I KM KL STCY+P+QFI+ E + +S + S
Sbjct: 310 HVNADLFKVLEELSIDTLRRIFEKMSKLKSTCYEPLQFIRHEAHSMSKSKKAFLSNKKDG 369
Query: 1096 QNMMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPSDAISA 1275
+M CYR+ +TPS+IYCLGPE E SNYVVK+ S +ASDF RVTFVDEDWSKL +A+SA
Sbjct: 370 GKLMRCYRIHITPSKIYCLGPEEEVSNYVVKYHSEYASDFARVTFVDEDWSKLSPNALSA 429
Query: 1276 KIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASNDNLTA 1455
+ + G FS P +T +Y RILSIL++G I KK+EFLAFSASQLR NSVWMFASN++LTA
Sbjct: 430 RTEQGFFSTPLKTGLYHRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNNSLTA 489
Query: 1456 ESIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGKKYCFS 1635
ESIR+WMGHF IRSVSKCAARMGQLFSSS QT E+T+ DG KY FS
Sbjct: 490 ESIRRWMGHFEDIRSVSKCAARMGQLFSSSRQTFEISSYDVEVIPDIEVTS-DGTKYIFS 548
Query: 1636 DGIGKISLPFARQIAQKCGL--SNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRSMLKFE 1809
DGIGKIS FARQIA+ GL ++ PSAFQIRYGGYKGVI D SF+ LSLR SM KFE
Sbjct: 549 DGIGKISTRFARQIAKLFGLDPAHPPSAFQIRYGGYKGVITIDPTSFFNLSLRPSMKKFE 608
Query: 1810 SANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEIALR 1989
S +TML++T WS+ QPC++NREI+ LLSTLG+KDE+FESMQ D M D MLT+ E AL
Sbjct: 609 SKSTMLNITNWSKSQPCYVNREIISLLSTLGIKDEVFESMQQDDMHESDGMLTNKEAALS 668
Query: 1990 VLDTLSGPDIRTAVKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGRVLIG 2169
VL + G D +TA +M++QGY+P+SEPYLLM+LKAHR +L DIR++C+I V KGRVLIG
Sbjct: 669 VLGKIGGADTKTASEMVLQGYEPSSEPYLLMILKAHRANRLTDIRTRCKIHVQKGRVLIG 728
Query: 2170 CLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLHPGDIR 2349
CLDET LDYGQVYI++T ++E + F N D TA IVGKV VTKNPCLHPGD+R
Sbjct: 729 CLDETCTLDYGQVYIRITKNRKEQKYSEQPFFCNDDGKTAVIVGKVAVTKNPCLHPGDVR 788
Query: 2350 VLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPETDAPM 2529
VL+AVYDP +D GL+DC++FPQ+G+RPHPNECSGGDLDGDL+F+ WD+ LIP + DAPM
Sbjct: 789 VLEAVYDPALDARGLIDCVVFPQRGERPHPNECSGGDLDGDLFFITWDDKLIPEKVDAPM 848
Query: 2530 DYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKCLELAN 2709
DYT TRPRIMDH V LEEIQK+FVNYMIND LG IST HL++AD P KAR +CL+LA
Sbjct: 849 DYTATRPRIMDHAVTLEEIQKHFVNYMINDALGVISTAHLIHADRNPLKARSPECLQLAA 908
Query: 2710 LHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYHEDLNS 2889
LHSMAVDFAKTGAPAEMP ALRP+ FPDFMER+E+PM+ S V+GKLYRAA + E N+
Sbjct: 909 LHSMAVDFAKTGAPAEMPVALRPREFPDFMERWERPMYVSTSVLGKLYRAALRHEE--NA 966
Query: 2890 ETI----TSQWVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEILTGNL 3057
E + + VYD DL V Y YAEKLG+LM YY AEHEDEILTGN+
Sbjct: 967 EALLPAGPPRCVYDPDLEVAGFDKFLDTAEEQYEVYAEKLGTLMTYYSAEHEDEILTGNI 1026
Query: 3058 RNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWYQVTYHPD 3237
RNK YL++D KRY EMKDR++ V L EV GW + E D K+ASAWY VTYHPD
Sbjct: 1027 RNKLVYLRRDNKRYFEMKDRIIAAVDALHAEVRGWLRAR-KEDDASKLASAWYHVTYHPD 1085
Query: 3238 YRPETRFLSFPWIVSDVLLRIKAAR 3312
R E RF SFPW+ D LL IKAAR
Sbjct: 1086 RRGEKRFWSFPWVACDTLLAIKAAR 1110
>sp|Q7XM31.1|RDR2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 2; Short=OsRDR2
gi|32492169|emb|CAE04828.1| OSJNBb0048E02.13 [Oryza
sativa Japonica Group]
Length = 1136
Score = 1200 bits (3104), Expect = 0.0
Identities = 631/1111 (56%), Positives = 776/1111 (69%), Gaps = 19/1111 (1%)
Frame = +1
Query: 34 ADVRATLHVSNIPHTAVAAELFDYFDASV---GSVYACKIATARRNWKSKGFGRVQFDTF 204
A A+L VSNIP +AVAAEL +FD++V G +AC+IA A R W S+G G VQF +
Sbjct: 6 AAATASLRVSNIPPSAVAAELLAFFDSAVAVAGGAFACEIAAAHRGWLSRGHGTVQFGSA 65
Query: 205 AAAERARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHME 384
AAA A L GRLP F A L+VSPS D++ RAS+ R A L G V E E
Sbjct: 66 AAAAAAAGLASSGRLPRFLGALLSVSPSPVDLLPRASDLSLRAAGAGLVVGDRVAERVFE 125
Query: 385 IFEAWEQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRESILLQLQYA 564
+AW+ VR E++P +++++L++++ ++YKLEVLF D+ + C LDG +ILLQL YA
Sbjct: 126 AADAWDGVRAEVIPGKRRVDLYLEHDSQRYKLEVLFEDMKDCLGCTLDGMGAILLQLNYA 185
Query: 565 PRCFVRIHGLEKES---NDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSC 735
PR I G S +DRF C+ED +F WVR DF+PN S G+ L+L
Sbjct: 186 PRIHTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGKSALV 245
Query: 736 AEILRKLPFSRALGEXXXXXXXXXXXXXXXXXXXXX--DCSVPYEILYQINSLVHMQKIT 909
++IL+ LPFS LGE D SVPYE+L+++NSL+HM KI
Sbjct: 246 SDILKSLPFSGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKIV 305
Query: 910 FRQVTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTSPFSKSI 1089
+ V DLF L+ LP DV+ +I KMHKL STCY P+QFI+ E +KRS S
Sbjct: 306 AKHVNADLFKALQELPVDVSRRIFEKMHKLESTCYGPLQFIQQEAYSMKRSHNVLLSNEG 365
Query: 1090 IAQN---MMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPS 1260
+ +M CYRV +TPS+I+C GPE E +NYVVKH SA+ASDF+RVTFVDEDWSKL S
Sbjct: 366 EGEGERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSS 425
Query: 1261 DAISAKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASN 1440
+AISA+I+ G FS+PF+T +Y RILSIL+ G I K FEFLAFSASQLR NSVWMFASN
Sbjct: 426 NAISARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASN 485
Query: 1441 DNLTAESIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGK 1620
+L A IR+WMGHF IRSVSKCAARMGQLFSSS QT EITT DG
Sbjct: 486 ASLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITT-DGS 544
Query: 1621 KYCFSDGIGKISLPFARQIAQKCGL--SNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRS 1794
KY FSDGIGKISL FA+++A GL +N PSAFQIRYGGYKGVI D S LSLR S
Sbjct: 545 KYIFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLRPS 604
Query: 1795 MLKFESANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDT 1974
M KFES + ML++T WS+ QPC++NREI+ LLSTLG++DEIF +MQ D+M+ ++MLT+
Sbjct: 605 MKKFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNK 664
Query: 1975 EIALRVLDTLSGPDIRTAVKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKG 2154
E+AL VL L G + +TAVKML+QGY+P+SEPYL M+LKAH+E +L DIR++C+I VPKG
Sbjct: 665 EVALSVLGKLGGSETKTAVKMLLQGYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKG 724
Query: 2155 RVLIGCLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLH 2334
RVLIGCLDET VL+YGQVYI++T +E + N ++ N D TAT+VGKV +TKNPCLH
Sbjct: 725 RVLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNPCLH 784
Query: 2335 PGDIRVLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPE 2514
PGDIRVL+A+YDP D +G+VDCL+FPQ+G+RPHPNECSGGDLDGDLYF+ WD+ LIP +
Sbjct: 785 PGDIRVLEAIYDP--DLVGMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEK 842
Query: 2515 TDAPMDYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKC 2694
D PMDYT TRPRIMDH V LEEIQK+FV+YMIND+LGAIST HL++AD P KAR +C
Sbjct: 843 VDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPEC 902
Query: 2695 LELANLHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYH 2874
L+LA LHSMAVDFAKTGAPAEMPR LRP+ +PDFMER+EKPM+ S GV+GKLYR+A +
Sbjct: 903 LQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHM 962
Query: 2875 ED------LNSETITSQWVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHED 3036
E L+S + YD DL V YY Y EKL +LMNYY AE ED
Sbjct: 963 EKSGDSGALSSSSAQPSPTYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELED 1022
Query: 3037 EILTGNLRNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWY 3216
EILTGN+RNK YL++D KRY EMKDR++ V L E GW S E+D +MASAWY
Sbjct: 1023 EILTGNIRNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWLLSSRKEEDASRMASAWY 1082
Query: 3217 QVTYHPDYRPETRFLSFPWIVSDVLLRIKAA 3309
+VTYHPD R RF SFPWI D LL IKA+
Sbjct: 1083 RVTYHPDRRRGKRFWSFPWIACDNLLAIKAS 1113
>ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum lycopersicum]
Length = 1119
Score = 1193 bits (3086), Expect = 0.0
Identities = 608/1111 (54%), Positives = 793/1111 (71%), Gaps = 18/1111 (1%)
Frame = +1
Query: 46 ATLHVSNIPHTAVAAELFDYFDASVG--SVYACKIATARRNWKSKGFGRVQFDTFAAAER 219
AT+ VSNIP +A+A +L ++FD+ +G SV+AC I + +NWKS+G GRVQF+T
Sbjct: 9 ATVRVSNIPQSAIAKDLSNFFDSLIGKGSVFACDIHSEHKNWKSRGHGRVQFETLQDKLH 68
Query: 220 ARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEAW 399
L ++G L LF+ +L++ S +DI+ R E + R +A LH G+LV + M++ E W
Sbjct: 69 CLSLAEQGNL-LFKGHQLSLVSSFDDIITRPVEPKCRFQAGILHTGLLVEKDVMQVLETW 127
Query: 400 EQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRES-ILLQLQYAPRCF 576
E V+ IMPERK LE +V + E Y+LEV FGD+ E + C ++ ++S +LL+L++AP+ +
Sbjct: 128 EDVKTLIMPERKCLEFWVSHAEECYRLEVQFGDVTEGTLCSVENQKSALLLKLKHAPKLY 187
Query: 577 VRIHG---LEKESNDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCAEIL 747
R+ G K S DR+ +C+ED +FLW+RTTDFS SIG S C + DG +++
Sbjct: 188 QRVSGPAVASKFSADRYHICKEDCEFLWIRTTDFSNIKSIGCSSSLCWETEDGWLSSDLF 247
Query: 748 RKLPFSRALG---EXXXXXXXXXXXXXXXXXXXXXDCSVPYEILYQINSLVHMQKITFRQ 918
LP + D +PYEIL+Q+NSLV QKI+
Sbjct: 248 SSLPCCNQDVIDLDLDKVGDIYSGSEFVPLVRIPSDLKLPYEILFQLNSLVQTQKISLGA 307
Query: 919 VTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTSPFSKS---I 1089
+ +L ++L L D A+ IL KMHKL S C+DP+ FIK L + +++ + S S +
Sbjct: 308 INPNLIEVLSKLELDTAMMILQKMHKLQSICFDPLLFIKTRLHVLGKNNKNRPSSSYSRL 367
Query: 1090 IAQNMMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPSDAI 1269
+ +MMS +RVLVTPS+IYCLGPELE SNY+VK+F++HASDFLRVTFV+EDW KL +A+
Sbjct: 368 VNHSMMSVHRVLVTPSKIYCLGPELETSNYIVKNFASHASDFLRVTFVEEDWGKLFPNAV 427
Query: 1270 SAKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASNDNL 1449
S ++ G+F++P+RT IY RILSILR+G+ I +K+F FLAFSASQLRSNSVWMFASN+ +
Sbjct: 428 SMSVEQGIFAKPYRTKIYHRILSILREGIVIGTKRFFFLAFSASQLRSNSVWMFASNEYV 487
Query: 1450 TAESIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGKKYC 1629
AE IR+WMG FN IRS+SKCAARMGQLFS+S+QTM E+T+ DG YC
Sbjct: 488 KAEDIREWMGCFNKIRSISKCAARMGQLFSTSVQTMEVKLQHVEILPDIEVTS-DGVSYC 546
Query: 1630 FSDGIGKISLPFARQIAQKCGLSNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRSMLKFE 1809
FSDGIGKIS FARQ+AQKCGL++TPSAFQIRYGGYKGVI DR SF KLSLR SMLKFE
Sbjct: 547 FSDGIGKISQAFARQVAQKCGLNHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFE 606
Query: 1810 SANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEIALR 1989
S N ML++TKWS+ PC+LNREIV LLSTLGV+D+ FE + + + LL KMLT E AL
Sbjct: 607 SKNRMLNITKWSDAMPCYLNREIVILLSTLGVEDKAFEDLLDNHLCLLGKMLTTNEAALD 666
Query: 1990 VLDTLSGPDIRTAV-KMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGRVLI 2166
VL+++ G +++ + +ML+QGY PN EPYL MML++H E Q+ D+RS+CRIF+PKGR+L+
Sbjct: 667 VLESMGGGEVKKILMRMLLQGYAPNQEPYLSMMLQSHFENQISDLRSRCRIFIPKGRILV 726
Query: 2167 GCLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLHPGDI 2346
GCLDET +L YGQVY+++TMTK ELQ NF + D+ TA + GKV+VTKNPCLHPGD+
Sbjct: 727 GCLDETGILKYGQVYVRITMTKAELQNGQQNFFQKVDETTAVVRGKVVVTKNPCLHPGDV 786
Query: 2347 RVLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPETDAP 2526
RVL+AVY+ ++ VDC+IFPQKG+RPHPNECSGGDLDGDLYF+CWDE+LIP +T P
Sbjct: 787 RVLEAVYEVTLEEKTWVDCIIFPQKGERPHPNECSGGDLDGDLYFICWDESLIPCQTVTP 846
Query: 2527 MDYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKCLELA 2706
MDYT RPRIMDH+V LEEIQ++FV+YMI+D LGAIST HLV+AD EP KA SKCL+LA
Sbjct: 847 MDYTGRRPRIMDHEVTLEEIQRFFVDYMISDTLGAISTAHLVHADREPDKALNSKCLQLA 906
Query: 2707 NLHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYHEDLN 2886
LHSMAVDFAKTGA AEMPR L+P+ FPDFMER++KPM+ S GV+GKLYR + N
Sbjct: 907 TLHSMAVDFAKTGAAAEMPRFLKPREFPDFMERWDKPMYISEGVLGKLYRGVMKSYIRRN 966
Query: 2887 SETITS----QWVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEILTGN 3054
S+ +++ Q YD+DLLV + + Y + + SL+NYYGAE E EILTGN
Sbjct: 967 SDDLSADRAIQDAYDHDLLVEGYEAFTETAKTHKAMYLDSMNSLLNYYGAEKEVEILTGN 1026
Query: 3055 LRNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWYQVTYHP 3234
LR KS YLQ+D +RY E+KDR+L+ K+L +EV GWF C E D K+ASAWY VTYHP
Sbjct: 1027 LRQKSVYLQRDNRRYFELKDRILVSAKSLHKEVKGWFTSCCQEDDHQKLASAWYHVTYHP 1086
Query: 3235 DYRPET-RFLSFPWIVSDVLLRIKAARARKS 3324
Y E+ L FPW+V D+LL +K+ RK+
Sbjct: 1087 SYCHESANCLGFPWVVGDILLNMKSHNTRKT 1117
>ref|NP_001183867.1| RNA-dependent DNA polymerase [Zea mays] gi|89473792|gb|ABD72708.1|
RNA-dependent RNA polymerase [Zea mays]
gi|374257933|gb|AEZ01781.1| RNA-dependent DNA polymerase
[Zea mays] gi|414586834|tpg|DAA37405.1| TPA: mediator of
paramutation1 [Zea mays]
Length = 1127
Score = 1192 bits (3084), Expect = 0.0
Identities = 625/1103 (56%), Positives = 772/1103 (69%), Gaps = 14/1103 (1%)
Frame = +1
Query: 46 ATLHVSNIPHTAVAAELFDYFDASV---GSVYACKIATARRNWKSKGFGRVQFDTFAAAE 216
AT+ VSNIP +A+AAEL +FD++V G+ +AC+I A R W S+G G VQFD+ AAA
Sbjct: 12 ATVRVSNIPASAIAAELLAFFDSAVTIAGATFACEIVAAHRGWLSRGHGFVQFDSSAAAT 71
Query: 217 RARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEA 396
A L GRLP F + L+VSP+ D++ RA + R +A+L G V E +E+ +
Sbjct: 72 HAIDLASSGRLPPFLGSCLSVSPARADLLPRAPDLSLRAASASLILGNRVAERELEVAYS 131
Query: 397 WEQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRESILLQLQYAPRCF 576
+ VR E++P ++++L++ + + YKLEVLF DI E C LDG +ILLQL YAPR
Sbjct: 132 CDGVRAEVIPRMRRVDLYLKHDSQSYKLEVLFEDINECFGCHLDGTGAILLQLTYAPRIH 191
Query: 577 VRIHGLEKES---NDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCAEIL 747
+ I G +S +DRF C+ED +F WVR DF+PN S G+ L+LS G S + IL
Sbjct: 192 IAISGSTVKSRFTDDRFHACKEDAKFAWVRALDFTPNSSFGECSTLVLKLSKGASVSYIL 251
Query: 748 RKLPFSRALGEXXXXXXXXXXXXXXXXXXXXXDC----SVPYEILYQINSLVHMQKITFR 915
LPFS LGE DC SVPYE+L+++NSLVHM K+ R
Sbjct: 252 ESLPFSGELGELAIASMDVFGSSSNVVPLV--DCPNGFSVPYEVLFRLNSLVHMGKLVAR 309
Query: 916 QVTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTSPFSKSIIA 1095
V DLF +L+ L D +I KM KL STCY+P+QFI+ E + + S +
Sbjct: 310 HVNADLFKVLEDLSIDTLRRIFEKMSKLKSTCYEPLQFIRHEAHSMNMRKKA-LSNKRES 368
Query: 1096 QNMMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPSDAISA 1275
+M CYR+ +TPS+IYCLGPE E SNYVVK+ S +ASDF RVTFVDEDWSKL +A+SA
Sbjct: 369 GKLMRCYRIHITPSKIYCLGPEEEVSNYVVKYHSEYASDFARVTFVDEDWSKLSPNALSA 428
Query: 1276 KIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASNDNLTA 1455
+ + G FS+P +T +Y RILSIL++G I KK+EFLAFSASQLR NSVWMFASN +LTA
Sbjct: 429 RTEQGFFSKPLKTGLYHRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNSSLTA 488
Query: 1456 ESIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGKKYCFS 1635
E+IR+WMGHF IRSVSKCAARMGQLFSSS QT E+TT DG KY FS
Sbjct: 489 ENIRRWMGHFEDIRSVSKCAARMGQLFSSSRQTFEVSSYDVEVIPDIEVTT-DGTKYIFS 547
Query: 1636 DGIGKISLPFARQIAQKCGL--SNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRSMLKFE 1809
DGIGKIS FARQ+A+ GL ++ PSAFQIRYGGYKGVI D SF+ LSLR SM KFE
Sbjct: 548 DGIGKISTRFARQVAKLIGLDPAHPPSAFQIRYGGYKGVITIDPTSFFNLSLRPSMKKFE 607
Query: 1810 SANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEIALR 1989
S +TML++T WS+ QPC++NREI+ LLSTLG+KDE+FESMQ D M D MLT+ E AL
Sbjct: 608 SKSTMLNITNWSKSQPCYVNREIISLLSTLGIKDEVFESMQQDDMHESDGMLTNKEAALS 667
Query: 1990 VLDTLSGPDIRTAVKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGRVLIG 2169
VL + G D +TA ML+QGY+P+SEPYLLM+LKAHR +L DIR++C+I V KGRVLIG
Sbjct: 668 VLGKIGGGDTKTAADMLLQGYEPSSEPYLLMILKAHRANRLTDIRTRCKIHVQKGRVLIG 727
Query: 2170 CLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLHPGDIR 2349
CLDET L+YGQVYI++T +E + F N D TA IVGKV +TKNPCLHPGD+R
Sbjct: 728 CLDETCKLEYGQVYIRITKNHKEQKYSEQPFFCNDDGKTAVIVGKVAITKNPCLHPGDVR 787
Query: 2350 VLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPETDAPM 2529
VL+AVYDP +D GL+DC++FPQ+G+RPHPNECSGGDLDGDL+F+ WD+ LIP + DAPM
Sbjct: 788 VLEAVYDPGLDARGLIDCVVFPQRGERPHPNECSGGDLDGDLFFITWDDKLIPEKVDAPM 847
Query: 2530 DYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKCLELAN 2709
DYT TRPRIMDH V LEEIQK+FV+YMIND LGAIST HL++AD +P KAR +C++LA
Sbjct: 848 DYTATRPRIMDHAVTLEEIQKHFVSYMINDTLGAISTAHLIHADRDPLKARSPECVQLAA 907
Query: 2710 LHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYHEDLNS 2889
LHSMAVDFAKTGAPAEMP ALRP+ FPDFMER+E+PM+ S GV+GKLYRAA + ED +
Sbjct: 908 LHSMAVDFAKTGAPAEMPLALRPREFPDFMERWERPMYVSNGVLGKLYRAALRHEEDAEA 967
Query: 2890 --ETITSQWVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEILTGNLRN 3063
VYD DL V Y YAE+LG+LM YY AE EDEILTGN+RN
Sbjct: 968 LLPAGPPSCVYDPDLEVAGFDEFLDAAEERYEAYAERLGALMTYYSAEREDEILTGNIRN 1027
Query: 3064 KSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWYQVTYHPDYR 3243
K YL++D KRY EMKDR++ V L EV GW + +C E D ++ASAWY VTYHPD R
Sbjct: 1028 KLVYLRRDNKRYFEMKDRIIAAVDALHAEVRGWLR-ACKEDDASRVASAWYHVTYHPDRR 1086
Query: 3244 PETRFLSFPWIVSDVLLRIKAAR 3312
E RF SFPWI+ D LL IKAAR
Sbjct: 1087 GEKRFWSFPWIICDTLLAIKAAR 1109
>gb|EOY20662.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobroma cacao]
gi|508773407|gb|EOY20663.1| RNA-dependent RNA polymerase
2 isoform 1 [Theobroma cacao]
Length = 1149
Score = 1190 bits (3078), Expect = 0.0
Identities = 615/1128 (54%), Positives = 799/1128 (70%), Gaps = 23/1128 (2%)
Frame = +1
Query: 43 RATLHVSNIPHTAVAAELFDYFDASVGS--VYACKIATARRNWKSKGFGRVQFDTFAAAE 216
R TL V+N+P TA+A +L ++ + +G+ V+A +I+T R NWKS+GFGRVQF T A
Sbjct: 13 RPTLRVTNVPQTAIAKDLLEFLEYKLGTDTVFAIEISTDRNNWKSRGFGRVQFATLEAKS 72
Query: 217 RARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEA 396
+A LL L H+ L +S +++DI+ R +RL+ LH G +V + ++ + E
Sbjct: 73 KAHLLSLRNDLVFKSHS-LKLSETYDDIIPRPIRADHRLDGGVLHVGFMVQDDYLRVLER 131
Query: 397 WEQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRE--SILLQLQYAPR 570
WE VR +MPER++LE ++ GE YKLEVLF D+LE+ CC +G ++LL+++YAPR
Sbjct: 132 WEDVRGWLMPERRRLEFWLWNNGECYKLEVLFDDVLETVGCCFNGSSCNALLLRVKYAPR 191
Query: 571 CFVRIHG---LEKESNDRFRVCREDIQFLWVRTTDFSPNGSIGKS--FYYCLQLS----D 723
+ ++ G K DR+ +C+E+ FLWVRTTDFS ++G+S FY+ + D
Sbjct: 192 IYQKVSGPNIASKLRPDRYHICKENFDFLWVRTTDFSRTKAVGQSTAFYWEINAELLTLD 251
Query: 724 GLSCAEILRKLPFSRALGEXXXXXXXXXXXXXXXXXXXXXDCSVPYEILYQINSLVHMQK 903
SC R+ L D + YEIL+Q+NSLVH QK
Sbjct: 252 LFSCFSCYREDMKGLTL---KGGGEFSSAPEIVPLVKGPSDSKLAYEILFQLNSLVHTQK 308
Query: 904 ITFRQVTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTS-PFS 1080
I+ V DL DIL+ L + A+ IL K HKL+STCY+PV F+K+ L +R+ S P S
Sbjct: 309 ISIASVDTDLIDILRVLAVETAVMILQKFHKLLSTCYNPVSFVKENLPVSERNFQSRPLS 368
Query: 1081 --KSIIAQNMMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKL 1254
K +I N+MSC+R LVTPS+IYCLGPELE SNYVVK+F+ +ASDF+RV+FV+EDW KL
Sbjct: 369 SFKRLIDHNVMSCHRALVTPSKIYCLGPELETSNYVVKNFAEYASDFMRVSFVEEDWGKL 428
Query: 1255 PSDAISAKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFA 1434
++AIS + G+FS+PFRT IY RILS+L+ G+ I K+FEFLAFSASQLRSNSVWMFA
Sbjct: 429 SANAISTSVQLGIFSKPFRTKIYHRILSVLQHGIVIGDKRFEFLAFSASQLRSNSVWMFA 488
Query: 1435 SNDNLTAESIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTED 1614
SND +TAE +R+WMG F IRSVSKCAARMGQLFSSS+ T+ E+T+ D
Sbjct: 489 SNDKVTAEDVREWMGCFKKIRSVSKCAARMGQLFSSSLPTLVVPVQDVKIIPDIEVTS-D 547
Query: 1615 GKKYCFSDGIGKISLPFARQIAQKCGLSNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRS 1794
G YCFSDGIGKISLPFAR++AQKCGL++TPSAFQIRYGGYKGV+ DR SF K+SLR S
Sbjct: 548 GINYCFSDGIGKISLPFAREVAQKCGLNDTPSAFQIRYGGYKGVVAVDRNSFRKMSLRGS 607
Query: 1795 MLKFESANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDT 1974
M KFES ML+VTKWSE PCFLNREIV LLSTLG+KDE FE++Q +Q+ LL +MLT+
Sbjct: 608 MHKFESKIRMLNVTKWSESMPCFLNREIVTLLSTLGIKDEAFETLQQEQLHLLGQMLTNR 667
Query: 1975 EIALRVLDTLSGPDIRTA-VKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPK 2151
E AL VL +L G D + VKML+QGY+PN EPYL MML A+ L D++ +CRI+VPK
Sbjct: 668 EAALDVLQSLCGADSQNILVKMLLQGYEPNVEPYLSMMLLANHVSLLSDLKCRCRIYVPK 727
Query: 2152 GRVLIGCLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCL 2331
G+VL+GCLDET+ L+YGQVY+++++ K EL+ + NF D+ TA ++GKV+VTKNPCL
Sbjct: 728 GQVLVGCLDETATLNYGQVYVRLSIKKAELEHADQNFFHKVDEKTAIVIGKVVVTKNPCL 787
Query: 2332 HPGDIRVLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPP 2511
HPGD+RVL+AVY+ ++ GLVDCL+FPQKG+RPHPNECSGGDLDGD +F+ WD++LIP
Sbjct: 788 HPGDVRVLEAVYEAELEDKGLVDCLVFPQKGERPHPNECSGGDLDGDQFFISWDKDLIPC 847
Query: 2512 ETDAPMDYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSK 2691
+TDAPMDYT +RPRIMDH+V LEEIQK+FV+YMIND LGAIST HLV+AD EP KAR K
Sbjct: 848 QTDAPMDYTGSRPRIMDHEVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPDKARSEK 907
Query: 2692 CLELANLHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSY 2871
CLELA LHSMAVDFAKTGAPAEMPR+L+P+ FPDFM+R +KPM+ S GV+GKLYRA +
Sbjct: 908 CLELATLHSMAVDFAKTGAPAEMPRSLKPREFPDFMQRVDKPMYASLGVLGKLYRATINS 967
Query: 2872 HEDLNSETITS----QWVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDE 3039
S+ + S + +YD+DL V + Y EK+ LMNYY E EDE
Sbjct: 968 TVQERSKFVWSKKMAEALYDHDLEVNGFEAFLSTAQTHKDMYEEKMSFLMNYYEVESEDE 1027
Query: 3040 ILTGNLRNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWYQ 3219
ILTGN+RNK+ +LQ+D +RYG+MKDR+L+ +KNL+ E F+ SC + ++ASAWY
Sbjct: 1028 ILTGNMRNKATFLQRDNRRYGDMKDRILLSMKNLQREARERFENSCKVGEHQRLASAWYH 1087
Query: 3220 VTYHPDYRPET--RFLSFPWIVSDVLLRIKAARARKS*MSWQVCVHMY 3357
VTYHP+Y E+ LSFPWIV D+LL+IK+ +R+ V H+Y
Sbjct: 1088 VTYHPNYCQESMKSCLSFPWIVGDILLKIKSVNSREIQREQPVFSHVY 1135
>gb|EMJ12511.1| hypothetical protein PRUPE_ppa000513mg [Prunus persica]
Length = 1118
Score = 1186 bits (3069), Expect = 0.0
Identities = 616/1109 (55%), Positives = 784/1109 (70%), Gaps = 21/1109 (1%)
Frame = +1
Query: 43 RATLHVSNIPHTAVAAELFDYFDASVG--SVYACKIATARRNWKSKGFGRVQFDTFAAAE 216
R T+ VSNIP T A EL + + +G SV+A +I + +NWKS+GFGRVQF T A
Sbjct: 6 RPTVRVSNIPQTVTAKELLSFLQSKLGTDSVFAVEIISDHKNWKSRGFGRVQFTTLEAKS 65
Query: 217 RARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEA 396
A L + L +F+ L +S +++DI+ R + + RL LHAG +V M + E+
Sbjct: 66 EAYSLSLQNGL-VFKSESLRLSETYDDIIQRPVDPKRRLNGTVLHAGFMVKGDCMSMLES 124
Query: 397 WEQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRE--SILLQLQYAPR 570
WE VR +MPERK++E +V E YKLE+ F +I+ES C L G + ++LL+L++ PR
Sbjct: 125 WEGVRAWVMPERKRVEFWVWLRDECYKLEIAFENIMESFGCRLGGEKVNALLLKLKFGPR 184
Query: 571 CFVRIHG---LEKESNDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCAE 741
F +I G + S DR+ VC++D FLWVRTTDFS SIG S +C ++ + S ++
Sbjct: 185 IFRKISGPNVAARFSTDRYHVCKDDFDFLWVRTTDFSDMKSIGYSTSFCWEIEEEFSVSD 244
Query: 742 ILRKLPFSRALGEXXXXXXXXXXXXXXXXXXXXXDC----SVPYEILYQINSLVHMQKIT 909
+ P+ + C +PYEIL+Q+N+LVH QKI+
Sbjct: 245 VFECFPYYKDNDVVDLILDNGEKYCSPSETVPLVKCRSDSKLPYEILFQLNALVHSQKIS 304
Query: 910 FRQVTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKR---SSTSPFS 1080
DL + L GL D +L K+HK +TCYDP+ F+K +L ++R S SP+
Sbjct: 305 LAATDSDLIEFLSGLSVDTTNVLLEKLHKRKTTCYDPLSFLKMQLHVLERNHKSRPSPY- 363
Query: 1081 KSIIAQNMMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPS 1260
K ++ N+MSC+RVL+TPS+I CLGPELEKSNYVVK+F+A+ASDF+RVTFVDEDWSKLP+
Sbjct: 364 KRLMEHNVMSCHRVLITPSKICCLGPELEKSNYVVKNFAAYASDFMRVTFVDEDWSKLPA 423
Query: 1261 DAISAKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASN 1440
+AIS I G+F++P RT IY R+LSILRDG+ I K+FEFLAFSASQLRS+SVWMF+SN
Sbjct: 424 NAISTSIQQGIFAKPHRTGIYHRMLSILRDGIVIGEKRFEFLAFSASQLRSSSVWMFSSN 483
Query: 1441 DNLTAESIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGK 1620
DN+ AE IR+WMG F+ IRS+SKCAARMGQLFSSS QT+ E T+ DG
Sbjct: 484 DNVKAEDIREWMGCFSKIRSISKCAARMGQLFSSSTQTLVVPAQDVEIIPDVE-TSSDGV 542
Query: 1621 KYCFSDGIGKISLPFARQIAQKCGLSNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRSML 1800
YCFSDGIGKISL FAR++AQKCGL TPSAFQIRYGGYKGVI D +SF KLSLR SML
Sbjct: 543 TYCFSDGIGKISLSFARKVAQKCGLDQTPSAFQIRYGGYKGVIAVDCRSFRKLSLRSSML 602
Query: 1801 KFESANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEI 1980
KFES N ML+VTKWS+ PC+LNREI+ LLSTLGVKDE FE++Q +Q++LL KM T+
Sbjct: 603 KFESKNRMLNVTKWSDAMPCYLNREIISLLSTLGVKDETFEALQEEQLRLLGKMRTERGA 662
Query: 1981 ALRVLDTLSGPDIR-TAVKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGR 2157
AL V + L+G D + T VKML+ GY+PN+EPYL MML+A+ E L D++S+CRIFVPKGR
Sbjct: 663 ALNVFERLNGADSKNTLVKMLLHGYEPNAEPYLSMMLQAYYENHLSDLKSRCRIFVPKGR 722
Query: 2158 VLIGCLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLHP 2337
VL+GCLDET LDYGQVY+++TMTK E + + +F + D+ T + GKV+VTKNPCLHP
Sbjct: 723 VLVGCLDETGNLDYGQVYVRITMTKAEQEMGDQSFFQKVDETTLVVTGKVVVTKNPCLHP 782
Query: 2338 GDIRVLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPET 2517
GD+RVL AVYD +++ +VDCLIFPQKG+RPHPNECSGGDLDGDL+F+ WD++L+P T
Sbjct: 783 GDVRVLDAVYDVVLEEKNMVDCLIFPQKGERPHPNECSGGDLDGDLFFISWDKDLVPSHT 842
Query: 2518 DAPMDYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKCL 2697
PMDY+ RPRIMDH V LEEIQK+FV+YMINDNLGAIST HLV+AD EP KA KCL
Sbjct: 843 VPPMDYSARRPRIMDHTVTLEEIQKFFVDYMINDNLGAISTAHLVHADHEPDKALNPKCL 902
Query: 2698 ELANLHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRA--ASSY 2871
+LA+LHSMAVDFAKTGAPAEM R L+PK FPDFMER +KPM+ S G +GKLYRA S
Sbjct: 903 QLADLHSMAVDFAKTGAPAEMSRTLKPKEFPDFMERVDKPMYISNGALGKLYRAVVGSVL 962
Query: 2872 HEDLN---SETITSQWVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEI 3042
E N SE I ++ YD DL V + Y EK+ ++MNYYGA EDEI
Sbjct: 963 QEKTNLVWSEQI-AEAAYDQDLEVDGLESVLEVAKGHRDMYIEKMRTMMNYYGAVTEDEI 1021
Query: 3043 LTGNLRNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWYQV 3222
LTGNLRN++AYLQ+D +RYG+MKDR+ + +KNL++E G F+ SCP + +MASAWY V
Sbjct: 1022 LTGNLRNRAAYLQRDNRRYGDMKDRISLSLKNLQKEAKGLFESSCPVSEHQRMASAWYHV 1081
Query: 3223 TYHPDY-RPETRFLSFPWIVSDVLLRIKA 3306
TYHP Y + + LSFPWIV D+LL IKA
Sbjct: 1082 TYHPSYFQQDMNCLSFPWIVGDILLNIKA 1110
>ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Fragaria vesca subsp.
vesca]
Length = 1136
Score = 1174 bits (3036), Expect = 0.0
Identities = 600/1112 (53%), Positives = 782/1112 (70%), Gaps = 18/1112 (1%)
Frame = +1
Query: 43 RATLHVSNIPHTAVAAELFDYFDASVG--SVYACKIATARRNWKSKGFGRVQFDTFAAAE 216
R T+ V+NIP T A EL + ++++G SV+A +I + +NWKS+G+GR+QF
Sbjct: 9 RPTVRVTNIPCTITATELLHFLESALGPDSVFAVEIVSDHKNWKSRGYGRIQFTALRHKA 68
Query: 217 RARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEA 396
RA+ L L F+ L + +H+DI+ R + ++RL + LHAG +V + M + E+
Sbjct: 69 RAQSLSSSADL-FFKSHNLRLFEAHDDIIPRPLDPRHRLNSTVLHAGFVVNDETMSVLES 127
Query: 397 WEQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRE--SILLQLQYAPR 570
WE VR +MPERK++E +V G+ YK+E+ F +I+ES CCL G + ++ L+L++ P+
Sbjct: 128 WEGVRAWVMPERKRVEFWVWRVGDCYKMEIAFENIVESVGCCLGGDKVNALRLKLKFGPK 187
Query: 571 CFVRIHG---LEKESNDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCAE 741
F ++ G K S DR+ VC+ED +LWVR TDFS SIG S +C ++ + ++ A
Sbjct: 188 IFRQLSGPNVASKFSADRYHVCKEDFDYLWVRCTDFSEMKSIGHSTAFCWEIQEDVAAAG 247
Query: 742 ILRKLP-FSRALGE--XXXXXXXXXXXXXXXXXXXXXDCSVPYEILYQINSLVHMQKITF 912
+ P F + + + D PYEIL+Q+N LVH QKI+
Sbjct: 248 VFTTFPSFRKDVVDLMFEDGGDCLLVSETVPLVKCEADMKFPYEILFQLNVLVHAQKISL 307
Query: 913 RQVTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTSPFS--KS 1086
V DL + GL D A +L K+ KL +TCYDP+ F+K +L ++R+S S +
Sbjct: 308 AAVGSDLIEFFGGLSMDTANVLLEKLQKLKTTCYDPLSFVKVQLQLLERNSKKRLSPHQR 367
Query: 1087 IIAQNMMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPSDA 1266
++ N+MSC+RVL+TPS+IYCLGPELEKSNYVVK+F+ +ASDF+RVTFV+EDW KLP +A
Sbjct: 368 LMEHNVMSCHRVLITPSKIYCLGPELEKSNYVVKNFAQYASDFMRVTFVEEDWGKLPVNA 427
Query: 1267 ISAKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASNDN 1446
+S I+ G F++PFRT IY RILSILRDG+ I K+FEFLAFSASQLRSNSVWMFASND+
Sbjct: 428 LSTSIEQGFFAKPFRTGIYQRILSILRDGIVIGDKRFEFLAFSASQLRSNSVWMFASNDS 487
Query: 1447 LTAESIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGKKY 1626
+ AE IR WMG FN IRSVSKCAARMGQLFSSS QT+ E TT DG Y
Sbjct: 488 VKAEDIRDWMGCFNKIRSVSKCAARMGQLFSSSTQTLTVPQKDVELIPDIE-TTTDGVSY 546
Query: 1627 CFSDGIGKISLPFARQIAQKCGLSNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRSMLKF 1806
CFSDGIGKISL FARQ+AQKCGL++TPSAFQIRYGGYKGVI DR SF KLSLR SMLKF
Sbjct: 547 CFSDGIGKISLSFARQVAQKCGLNDTPSAFQIRYGGYKGVIAVDRNSFRKLSLRSSMLKF 606
Query: 1807 ESANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEIAL 1986
+S N ML+VTKWS PCFLNREI+ L+STLGV+DE FE++Q +Q+ LL +M D +AL
Sbjct: 607 DSDNRMLNVTKWSSSMPCFLNREIITLMSTLGVEDEAFEALQQEQLDLLGRMRKDRNVAL 666
Query: 1987 RVLDTLSGPDIRT-AVKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGRVL 2163
L+ LSG D VK+L+QGY+PN EPYL MML+AH E+ L D++S+CR++VPKGR+L
Sbjct: 667 SSLEKLSGADSNNILVKLLLQGYEPNLEPYLSMMLQAHYEHHLADLKSRCRMYVPKGRIL 726
Query: 2164 IGCLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLHPGD 2343
+GCLDET L+YGQVY+++TMTK E + + +F + D+ T + GKV+VTKNPCLHPGD
Sbjct: 727 VGCLDETGTLNYGQVYLRITMTKAEQEMGHQSFFQRVDEATCIVTGKVVVTKNPCLHPGD 786
Query: 2344 IRVLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPETDA 2523
IRVL+AVYD ++ +VDC++FPQKG+RPHPNECSGGDLDGDL+F+ WD++LIPP T
Sbjct: 787 IRVLEAVYDVGLEEKNMVDCILFPQKGERPHPNECSGGDLDGDLFFISWDKSLIPPTTVP 846
Query: 2524 PMDYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKCLEL 2703
PMDY+ RPR MDHDV LEEIQK+FV+YMINDNLGAIST HLV++D EP KA KCLEL
Sbjct: 847 PMDYSARRPRNMDHDVTLEEIQKFFVDYMINDNLGAISTAHLVHSDHEPEKAMSKKCLEL 906
Query: 2704 ANLHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYHEDL 2883
A+LHSMAVDFAKTGAPAE+ L+PK FPDFMER E+PM+ S G +GKLYRA S
Sbjct: 907 ADLHSMAVDFAKTGAPAELSWILKPKEFPDFMERVERPMYISNGALGKLYRAIRSSVVQE 966
Query: 2884 NSETITSQW----VYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEILTG 3051
+ + SQ YD +L V + +Y EK+ SLMNYY A EDEILTG
Sbjct: 967 QTIVVWSQQRAEEAYDRELEVQGFESFLEMAESHRDKYIEKMRSLMNYYEATTEDEILTG 1026
Query: 3052 NLRNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWYQVTYH 3231
NLRN++AYLQ+D +RY ++KDR+L+ +K L++E GWF+ SC + ++ASAWY VTY+
Sbjct: 1027 NLRNRAAYLQRDNRRYFDLKDRILLSLKTLQKEAKGWFESSCKVSEQQRLASAWYHVTYN 1086
Query: 3232 PDY-RPETRFLSFPWIVSDVLLRIKAARARKS 3324
Y + + LSFPWIV D+LL IK+ +R+S
Sbjct: 1087 LAYFQEDMNCLSFPWIVGDILLNIKSLNSRRS 1118
>ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Populus trichocarpa]
gi|222868578|gb|EEF05709.1| hypothetical protein
POPTR_0015s08500g [Populus trichocarpa]
Length = 1110
Score = 1174 bits (3036), Expect = 0.0
Identities = 613/1113 (55%), Positives = 776/1113 (69%), Gaps = 19/1113 (1%)
Frame = +1
Query: 43 RATLHVSNIPHTAVAAELFDYFDASVG--SVYACKIATARRNWKSKGFGRVQFDTFAAAE 216
R ++ V+NIP T A E+ Y A +G SV+A +I+T R+NW S+GFGRVQF +
Sbjct: 7 RPSVRVTNIPQTITAKEILQYLVAQLGKDSVFAIEISTVRKNWNSRGFGRVQFSSLEVKH 66
Query: 217 RARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEA 396
A L + +L L + L +S +++DI+ R + QNR+E L+ G + E + + E
Sbjct: 67 EALSLSLKNKLVL-KSQNLKLSETYDDIIPRPVKDQNRMENGVLYVGFMKKETTLCVLEY 125
Query: 397 WEQVRVEIMPERKKLELFVDYGGE-KYKLEVLFGDILESSSCCLDGRE--SILLQLQYAP 567
WE VR MPER+++E ++ G E +YKL V F DILE+ LDG + +++L+L+Y P
Sbjct: 126 WEGVRGWFMPERRRIEFWIRVGQEFRYKLVVEFEDILEAVGYPLDGDKVNAVVLKLRYGP 185
Query: 568 RCFVRIHG---LEKESNDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCA 738
R + +I G K S +R+ C+ED FLWVRTTD S SIG+S +C ++ +GL +
Sbjct: 186 RIYQKISGPGIASKFSTNRYFYCKEDFDFLWVRTTDISAIKSIGQSTSFCWEIGEGLEAS 245
Query: 739 EILRKLPFSRALGEXXXXXXXXXXXXXXXXXXXXXDCS--VPYEILYQINSLVHMQKITF 912
+ R P+ + S + YE+L+Q+NSLVH QKI+
Sbjct: 246 DTFRNFPYYQEDMNRLDLEDGEEFCSASETVPLIRCGSDKLAYEVLFQLNSLVHTQKISL 305
Query: 913 RQVTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTSPFSKSII 1092
V DL IL+ L + AI IL K+HKL TCYDP+ F+K L R S S KS+
Sbjct: 306 AAVDSDLIKILRNLTVNTAIIILQKLHKLKMTCYDPLSFVKQSL----RESLSSPPKSLT 361
Query: 1093 AQNMMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPSDAIS 1272
N+MSC+R L+TPS+I+CLGPE E SNYVVKHF+ +ASDF+RVTFV+EDWSKLP++AIS
Sbjct: 362 ENNIMSCHRALITPSKIFCLGPEYETSNYVVKHFAQYASDFIRVTFVEEDWSKLPANAIS 421
Query: 1273 AKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASNDNLT 1452
I G+F++PFRT IY RILSILRDG I +K+FEFLAFSASQLRSNSVWMFASN+ +
Sbjct: 422 TSIQRGIFAKPFRTGIYHRILSILRDGFVIGAKRFEFLAFSASQLRSNSVWMFASNNGVK 481
Query: 1453 AESIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGKKYCF 1632
AE IRKWMG F+ IRSVSKCAARMGQLFSSS+QT E+TT DG YCF
Sbjct: 482 AEDIRKWMGCFDKIRSVSKCAARMGQLFSSSLQTFVVPVQDVEIIPDIEVTT-DGIDYCF 540
Query: 1633 SDGIGKISLPFARQIAQKCGLSNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRSMLKFES 1812
SDGIGKISL FA+Q+A KCGLS+TPSAFQIRYGGYKGV+ DR SF KLSLR SMLKF+S
Sbjct: 541 SDGIGKISLSFAKQVAHKCGLSHTPSAFQIRYGGYKGVVAVDRNSFRKLSLRSSMLKFDS 600
Query: 1813 ANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEIALRV 1992
N ML+VTKWSE PC+LNREI+ LLSTLGV DEIF+++Q Q+ L KMLT+ E AL V
Sbjct: 601 ENRMLNVTKWSESMPCYLNREIISLLSTLGVADEIFQALQQKQLYRLRKMLTNKESALDV 660
Query: 1993 LDTLSGPDIRTA-VKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGRVLIG 2169
L+ L+ D + V+ML+QGY+PN EPYL MML+A+ E L+++RS+CRIFVPKGR+LIG
Sbjct: 661 LENLAWADSKNILVQMLLQGYEPNVEPYLSMMLQAYHENSLMELRSRCRIFVPKGRILIG 720
Query: 2170 CLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLHPGDIR 2349
CLDE+ +LDYGQVY+++TMTK ELQ + +F + D+ T+TI+G+V VTKNPCLHPGDIR
Sbjct: 721 CLDESGILDYGQVYVRITMTKAELQCCDQSFFRKVDESTSTIIGEVAVTKNPCLHPGDIR 780
Query: 2350 VLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPETDAPM 2529
VL+AVYD ++ GLVDC+IFPQ G RPHPNECSGGDLDGD +F+ WDE L+P T+APM
Sbjct: 781 VLEAVYDVELEEKGLVDCIIFPQNGGRPHPNECSGGDLDGDQFFISWDEGLLPCHTEAPM 840
Query: 2530 DYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKCLELAN 2709
DY R RIMDH+V LEEIQ++FV+YMIND LGAIST HLV+AD EP KAR KCL+LA
Sbjct: 841 DYVGGRQRIMDHNVTLEEIQRFFVDYMINDTLGAISTAHLVHADCEPDKARSEKCLQLAT 900
Query: 2710 LHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYHEDLNS 2889
LHSMAVDFAKTGAPAEMP L+P+ FPDFMER EK M+ S GV+GKLYR H+
Sbjct: 901 LHSMAVDFAKTGAPAEMPLYLKPREFPDFMERAEKQMYISDGVLGKLYR---DIHDSTRQ 957
Query: 2890 ETITSQW-------VYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEILT 3048
E W YD DL V Y +Y EK+ +LM+YYGA+ EDEILT
Sbjct: 958 ERSNFMWSKKIAEATYDQDLEVKGFEDFLGIASIYKEKYMEKMSTLMDYYGAKTEDEILT 1017
Query: 3049 GNLRNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWYQVTY 3228
GNLR++ YLQ+D ++YG++KDR+L+ +KNLK+E WF+ SC + MASAWY VTY
Sbjct: 1018 GNLRHRPTYLQRDNRKYGDVKDRILVSLKNLKKEAKEWFESSCNPTEHQCMASAWYHVTY 1077
Query: 3229 HPDYRPE-TRFLSFPWIVSDVLLRIKAARARKS 3324
HP Y E LSFPWIV D+LL IK+ +R +
Sbjct: 1078 HPTYFHERMNCLSFPWIVGDILLNIKSLNSRNA 1110
>ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Citrus sinensis]
Length = 1131
Score = 1173 bits (3034), Expect = 0.0
Identities = 611/1133 (53%), Positives = 789/1133 (69%), Gaps = 38/1133 (3%)
Frame = +1
Query: 40 VRATLHVSNIPHTAVAAELFDYFDASVG--SVYACKIATARRNWKSKGFGRVQFDTFAAA 213
V AT+ VSNIP TA+A +L + ++ +G SV+A +I T R NWKS+G GRVQF +
Sbjct: 2 VLATVWVSNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFK 61
Query: 214 ERARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFE 393
+A+ L +L +F L +S +H+DIV R + Q+R+E LH GV+ E + + +
Sbjct: 62 SKAQNLSLNDKL-VFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQ 120
Query: 394 AWEQVRVEIMPERKKLELFV--DYGGEK---------------YKLEVLFGDILESSSCC 522
+E VR ++P+R++LE +V + GE +K+E+LF D+LE+
Sbjct: 121 TFEGVRGWLLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFS 180
Query: 523 LDGRES---ILLQLQYAPRCFVRIHG---LEKESNDRFRVCREDIQFLWVRTTDFSPNGS 684
LD + IL +L+Y P+ + ++ G K +DR+ +C+ED F WVRTTDFS S
Sbjct: 181 LDEGATVNGILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKS 240
Query: 685 IGKSFYYCLQLSDGLSCAEILRKLPFSRALGEXXXXXXXXXXXXXXXXXXXXXDC----S 852
IG S + ++ +GL ++I PF + + C +
Sbjct: 241 IGCSTSFFWEIKNGLLASDISNIFPFYKE-DKTDLILEEGEEFCTTSEIVPLVKCRPGFN 299
Query: 853 VPYEILYQINSLVHMQKITFRQVTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFI 1032
+ +E+L+Q+NSLVH QK++ +L IL GL + A+ +L K+HKL S CYDPV F+
Sbjct: 300 LSHEVLFQLNSLVHNQKVSLVAADAELIQILNGLSMETALMVLQKLHKLKSICYDPVSFV 359
Query: 1033 KDELSRIKRSSTS-PFS--KSIIAQNMMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAH 1203
K +L + R+ S P S K +I N+MSCYR LVTP +IYCLGPELE SNYVVK+F+ +
Sbjct: 360 KTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELETSNYVVKNFAKY 419
Query: 1204 ASDFLRVTFVDEDWSKLPSDAISAKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEF 1383
ASDF+RVTFV+EDWSKLP++A+S I G+F++P+RT IY+RIL+IL+DG+ I K +EF
Sbjct: 420 ASDFMRVTFVEEDWSKLPANALSTSIQRGIFAKPYRTKIYSRILTILQDGIVIGDKHYEF 479
Query: 1384 LAFSASQLRSNSVWMFASNDNLTAESIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNX 1563
LAFSASQLR+NSVWMFASND ++AE +R+WMG FN I SVSKCAARMGQLFSSS QT+
Sbjct: 480 LAFSASQLRNNSVWMFASNDEVSAEDVREWMGCFNKIHSVSKCAARMGQLFSSSKQTLVV 539
Query: 1564 XXXXXXXXXXXEITTEDGKKYCFSDGIGKISLPFARQIAQKCGLSNTPSAFQIRYGGYKG 1743
E+T+ DG YCFSDGIGKISL FARQ+AQKCGLS+TPSAFQIRYGGYKG
Sbjct: 540 PVQDVEMIPDVEVTS-DGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSAFQIRYGGYKG 598
Query: 1744 VIVSDRKSFWKLSLRRSMLKFESANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFE 1923
VI DR SF KLSLRRSMLKFES N ML+VTKWSE PCFLNREI+ LLSTLGVKD++FE
Sbjct: 599 VIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLSTLGVKDDVFE 658
Query: 1924 SMQHDQMQLLDKMLTDTEIALRVLDTLSGPDIRT-AVKMLIQGYKPNSEPYLLMMLKAHR 2100
+MQ Q+ LL KML + E AL VL L+G D + VKML+QGY+PN EPYL MML +H
Sbjct: 659 AMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEPYLSMMLLSHH 718
Query: 2101 EYQLLDIRSKCRIFVPKGRVLIGCLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQ 2280
E QL D++S+CRI+VPKGR+LIGC DET +L+YGQV+++VTMT+EEL+ ++ +F D
Sbjct: 719 ENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESKDQSFFHRVDD 778
Query: 2281 ITATIVGKVLVTKNPCLHPGDIRVLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGD 2460
T+ + GKVLVTKNPCLHPGD+RVL+AVY+ ++ VDC+IFPQKG+RPHPNECSGGD
Sbjct: 779 KTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGERPHPNECSGGD 838
Query: 2461 LDGDLYFVCWDENLIPPETDAPMDYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAIST 2640
LDGD++F+ WD +LIP ET+ PMDYT R RIMDHDV LEEI K+FV+YMIND LGAIST
Sbjct: 839 LDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYMINDTLGAIST 898
Query: 2641 THLVYADSEPSKARCSKCLELANLHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPM 2820
HLV+AD +P KAR SKCL LA LHSMAVDFAKTGAPAEMP AL+PK FPDFMER +KP
Sbjct: 899 AHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFPDFMEREDKPR 958
Query: 2821 FNSPGVIGKLYRAASSYHEDLNSETITSQWV----YDYDLLVXXXXXXXXXXXXYYSRYA 2988
+ S GV+GKLYRA + S I S+ + YD+DL V + Y
Sbjct: 959 YISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLGVAESHKEMYE 1018
Query: 2989 EKLGSLMNYYGAEHEDEILTGNLRNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFK 3168
E++ +LMNYYGA EDEILTGNLRN+++YLQ+D +RYG+MKDR+L+ KNL+ E WF
Sbjct: 1019 EEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKNLQNEAKEWFG 1078
Query: 3169 CSCPEKDLFKMASAWYQVTYHPDY-RPETRFLSFPWIVSDVLLRIKAARARKS 3324
SC E + ++ASAWY VTY P Y + LSFPWIV D+LL IK+ +RK+
Sbjct: 1079 SSCKENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNIKSVNSRKA 1131
>ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cicer arietinum]
Length = 1122
Score = 1173 bits (3034), Expect = 0.0
Identities = 615/1113 (55%), Positives = 779/1113 (69%), Gaps = 23/1113 (2%)
Frame = +1
Query: 49 TLHVSNIPHTAVAAELFDYFDASVG--SVYACKIATARRNWKSKGFGRVQFDTFAAAERA 222
T+ V NIP +A A +L + +++VG SV+A +I + NWKS+G GRVQF+TF A +A
Sbjct: 10 TVRVFNIPQSATAKDLLHFLESTVGPSSVFALEIFSDHSNWKSRGSGRVQFETFEAKSKA 69
Query: 223 RLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEAWE 402
L +L LF L ++ S +DIV R NRL LHAG +G M + ++WE
Sbjct: 70 LSLSSNDKL-LFNSHFLRLAASSDDIVPRPPLPCNRLHNGTLHAGFPLGPDRMSVIQSWE 128
Query: 403 QVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRE--SILLQLQYAPRCF 576
V+ +MPER +L+ +V + + +KLE+ F +ILE DG + ++LL+L+Y PR +
Sbjct: 129 GVKGWVMPERNRLDFWVTHHDQCFKLEIPFENILECDGFSSDGSKPNALLLKLKYGPRIY 188
Query: 577 VRIHG---LEKESNDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCAEIL 747
R+ G K DR+R C+ED F+WVRTTDFS SIG S +C ++ + S +++
Sbjct: 189 QRMEGPNVSAKFKADRYRFCKEDFAFMWVRTTDFSRLKSIGHSTSFCWEIEEESSDSDVF 248
Query: 748 RKLPFSRALGE---XXXXXXXXXXXXXXXXXXXXXDCSVPYEILYQINSLVHMQKITFRQ 918
R P R + D +PYE L+Q+NSLVH QKI+
Sbjct: 249 RSFPLYRENLKDLSLEDGEEFCSPTETVPLVKCRLDTKLPYEALFQLNSLVHTQKISLAS 308
Query: 919 VTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELS--RIKRSSTSPFSKSII 1092
V +L D++ L + I K+HK+ STCY+P++F+K +L IK+ S P S+ +
Sbjct: 309 VDDELIDLIASLDDETKAVIFQKLHKMSSTCYEPLRFVKTQLHVLSIKKKSLRPSSQKRL 368
Query: 1093 A-QNMMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPSDAI 1269
A N+MSC+R L+TPS+IYCLGPELE SN+VVKHF+++ASDF+R+TFV+EDWSKLP +A+
Sbjct: 369 ADNNIMSCHRALITPSKIYCLGPELETSNHVVKHFASYASDFMRITFVEEDWSKLPINAV 428
Query: 1270 SAKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASNDNL 1449
S + G+F++PFRT IY R+L+ILRDG+ I SK+FEFLAFSASQLRSNSVW+FASND +
Sbjct: 429 STSLQKGIFAKPFRTDIYKRVLTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDKV 488
Query: 1450 TAESIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGKKYC 1629
AE IR+WMG F IRSVSKCAARMGQLFSSS QT E+T+ DG YC
Sbjct: 489 KAEDIREWMGSFTNIRSVSKCAARMGQLFSSSKQTFEMAPQDVDIIPDIELTS-DGINYC 547
Query: 1630 FSDGIGKISLPFARQIAQKCGL--SNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRSMLK 1803
FSDGIGKISL FA+Q+AQK L S PSAFQIRYGGYKGVI DR SF KLS+R SMLK
Sbjct: 548 FSDGIGKISLSFAKQLAQKLKLDQSRIPSAFQIRYGGYKGVIAVDRHSFRKLSMRNSMLK 607
Query: 1804 FESANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEIA 1983
FES N ML VTKWSE PCFLNREI+ LLSTLGVKDE +MQ +Q+QLL KMLTD E A
Sbjct: 608 FESKNRMLCVTKWSESMPCFLNREIISLLSTLGVKDEALLAMQEEQLQLLGKMLTDREAA 667
Query: 1984 LRVLDTLSGPDIRT-AVKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGRV 2160
L VL++LSG D R+ VKML Y+PNSEPYL MMLKAH YQL D++S+CRIFVPKGRV
Sbjct: 668 LDVLESLSGADSRSILVKMLNGFYEPNSEPYLSMMLKAHYAYQLSDLKSRCRIFVPKGRV 727
Query: 2161 LIGCLDETSVLDYGQVYIKVTM--TKEELQKENTNFIKNADQITATIVGKVLVTKNPCLH 2334
LIGCLDET +L+YGQV++++T+ TKE++ EN + + D T IVGKV+VTKNPCLH
Sbjct: 728 LIGCLDETGILNYGQVFVRITVTKTKEKIGDENLQNV-DGDDSTRIIVGKVVVTKNPCLH 786
Query: 2335 PGDIRVLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPE 2514
PGDIRVL A+Y+ ++ GL DCL+FPQKG RPHPNECSGGDLDGDL+F+ WD++LIPP+
Sbjct: 787 PGDIRVLDAIYNEELEEKGLRDCLVFPQKGPRPHPNECSGGDLDGDLFFISWDKDLIPPQ 846
Query: 2515 TDAPMDYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKC 2694
TD PMDYT RPRIMDH V LEEI ++FV+YMIND LGAIST HLV+AD EP KAR KC
Sbjct: 847 TDNPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREPEKARSRKC 906
Query: 2695 LELANLHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYH 2874
LELA LHSMAVDFAKTGAPAEMPRAL+P+ FPDFMERF+KPM+ S GV+GKLYRA
Sbjct: 907 LELAELHSMAVDFAKTGAPAEMPRALKPREFPDFMERFDKPMYISNGVLGKLYRALVEST 966
Query: 2875 EDLNSETITS----QWVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEI 3042
+ S + S + YD+ L V + YA+K+ SLM++Y AE EDE+
Sbjct: 967 TQVRSNIVLSEKFAEEAYDHQLEVNGFEAFLETASSHKEMYAQKMSSLMSFYDAETEDEM 1026
Query: 3043 LTGNLRNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWYQV 3222
LTGNL+N+++YLQ+D +RYG+MKDR+LI VK+L+ E WF+ C + MASAWY V
Sbjct: 1027 LTGNLQNRASYLQRDNRRYGDMKDRILISVKDLQREAKEWFESDCQPHEYQLMASAWYHV 1086
Query: 3223 TYHPDYRPE-TRFLSFPWIVSDVLLRIKAARAR 3318
TYHP Y E + FLSFPWIV D+LL IK+ +
Sbjct: 1087 TYHPKYSHESSTFLSFPWIVGDILLHIKSVNTK 1119
>gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis]
Length = 1115
Score = 1172 bits (3031), Expect = 0.0
Identities = 599/1110 (53%), Positives = 774/1110 (69%), Gaps = 16/1110 (1%)
Frame = +1
Query: 43 RATLHVSNIPHTAVAAELFDYFDASVG--SVYACKIATARRNWKSKGFGRVQFDTFAAAE 216
R T+ V+NIP TA+A +L + ++ +G SV+A +I+T R+NWKS+GFGRVQF + AA
Sbjct: 7 RPTVRVTNIPQTAIATDLQTFLESKLGPNSVFAVEISTERKNWKSRGFGRVQFTSLAAKL 66
Query: 217 RARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEA 396
A+ L +F+ L + +H+DIV + + RLE LHAG ++ + M + ++
Sbjct: 67 VAQALSLSNNF-VFRSRNLGIFDTHDDIVALPVDPKLRLEDGVLHAGFMIRDDRMAVLQS 125
Query: 397 WEQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRE--SILLQLQYAPR 570
WE VR MPER ++E +V + YKLEV F D+LE+ CLD + + LLQL+Y P+
Sbjct: 126 WEGVRAWAMPERNRVEFWVWSDEDCYKLEVAFEDVLETVGYCLDDGKLYAFLLQLKYGPK 185
Query: 571 CFVRIHGLEKESNDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCAEILR 750
+ RI K DR+ +C+ED +F WVRTTDF + SIG S C + ++ R
Sbjct: 186 IYKRISRPSKFVADRYHICKEDFEFHWVRTTDFLESKSIGHSTSLCWDAKEDFLSSDTFR 245
Query: 751 KLPFSRALGEXXXXXXXXXXXXXXXXXXXXXDC----SVPYEILYQINSLVHMQKITFRQ 918
P+ R G C ++ YEIL+Q+NSLVHMQKI+F
Sbjct: 246 SFPYYRE-GMKDLILEDSDEFCSVSETVPLIKCPAGSNLSYEILFQLNSLVHMQKISFAS 304
Query: 919 VTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTSPFS--KSII 1092
DL + L D A ++ K+HKL STCYDP+ K +++++ +P S K +
Sbjct: 305 ADADLIEYFGSLNIDTANAVIQKLHKLKSTCYDPLSLAKTYAHILEKNTKNPSSAIKRLT 364
Query: 1093 AQNMMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPSDAIS 1272
++MSC+R L+TPS+IYC+GPELE SNYVVK+F+A+ASDFLRVTFV+EDW KL +S
Sbjct: 365 ENSLMSCHRALITPSKIYCMGPELETSNYVVKNFAAYASDFLRVTFVEEDWGKLHPHVVS 424
Query: 1273 AKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASNDNLT 1452
I+ G+F++P+RT IY RILSILR+G+ I +K++EFLAFSASQLRS++VWMFASNDN+
Sbjct: 425 TSIEQGIFAKPYRTGIYDRILSILRNGILIGAKRYEFLAFSASQLRSSAVWMFASNDNVK 484
Query: 1453 AESIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGKKYCF 1632
AE IR+WMG FN IRSVSKCAARMGQLFSSS QT+ E+TT DG YCF
Sbjct: 485 AEDIREWMGCFNKIRSVSKCAARMGQLFSSSRQTLIVPTQDLEIIPDVEVTT-DGIDYCF 543
Query: 1633 SDGIGKISLPFARQIAQKCGLSNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRSMLKFES 1812
SDGIGKIS FARQ+AQKCGL TPSAFQIRYGGYKGVI +R SF KLSLR SMLKFES
Sbjct: 544 SDGIGKISSSFARQVAQKCGLKETPSAFQIRYGGYKGVIAVNRSSFRKLSLRSSMLKFES 603
Query: 1813 ANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEIALRV 1992
+N ML+VTKWS PC+LNREIV LLS+LGVKDE F ++ +Q+ LL KM T+ E AL V
Sbjct: 604 SNRMLNVTKWSGSMPCYLNREIVSLLSSLGVKDESFLALLREQLLLLGKMRTNREAALNV 663
Query: 1993 LDTLSGPDIRTA-VKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGRVLIG 2169
L+ L+G D VKML+QGY+PN+EPYL MM++++ E QL D++++CRIFVPKG+VLIG
Sbjct: 664 LENLNGSDSSNILVKMLLQGYEPNAEPYLSMMIQSYYENQLSDLKTRCRIFVPKGKVLIG 723
Query: 2170 CLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLHPGDIR 2349
CLDET +L+YGQVY+++TM K EL+ N +F + D T+ +VGKV+VTKNPCLHPGD+R
Sbjct: 724 CLDETGILEYGQVYVRLTMKKAELEAGNQSFFRKVDDETSIVVGKVVVTKNPCLHPGDVR 783
Query: 2350 VLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPETDAPM 2529
VL+AVYD ++ GLVDCL+FPQKG+RPHPNECSGGDLDGDL+F+ WD NLIPP T APM
Sbjct: 784 VLEAVYDAKLEEEGLVDCLVFPQKGERPHPNECSGGDLDGDLFFISWDTNLIPPRTTAPM 843
Query: 2530 DYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKCLELAN 2709
DY RPRIMDHDV LEEIQK+FV+YMIND LG IST HL++AD EP KA CL+LA
Sbjct: 844 DYIGRRPRIMDHDVTLEEIQKFFVDYMINDTLGGISTAHLIHADREPEKAFSENCLQLAT 903
Query: 2710 LHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYHEDLNS 2889
LHSMAVDFAKTGAPAEMPRALRP+ +PDFMER ++PM+ S G +GKLYRA +S
Sbjct: 904 LHSMAVDFAKTGAPAEMPRALRPRDYPDFMERLDRPMYVSNGALGKLYRATVESESQGSS 963
Query: 2890 ETI----TSQWVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEILTGNL 3057
+ T++ YD DL V + Y +K+ +MNYY E EDE+LTGNL
Sbjct: 964 NLVWSEKTAEAAYDRDLEVNGFEEFIALAESHRDMYIDKMNGIMNYYELESEDEVLTGNL 1023
Query: 3058 RNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLFKMASAWYQVTYHPD 3237
R ++AYLQ+D +RY E+KDR+L+ VK+L+ E GWF+ SC + KMASAWY VTYHP+
Sbjct: 1024 RKRAAYLQRDNRRYFEVKDRILLAVKSLQREAKGWFEGSCEAMEQQKMASAWYHVTYHPN 1083
Query: 3238 -YRPETRFLSFPWIVSDVLLRIKAARARKS 3324
Y+ LSFPWI D+LL IK+ ++++
Sbjct: 1084 YYQKSINCLSFPWIKGDILLNIKSINSQRN 1113
>ref|XP_003579930.1| PREDICTED: probable RNA-dependent RNA polymerase 2-like [Brachypodium
distachyon]
Length = 1140
Score = 1164 bits (3012), Expect = 0.0
Identities = 611/1107 (55%), Positives = 768/1107 (69%), Gaps = 15/1107 (1%)
Frame = +1
Query: 46 ATLHVSNIPHTAVAAELFDYFD---ASVGSVYACKIATARRNWKSKGFGRVQFDTFAAAE 216
AT+ VSNIP AVAAEL +FD A+VG+ +AC+I A R W+S+G G VQFD+ A A
Sbjct: 12 ATVRVSNIPRLAVAAELLAFFDSAVAAVGTTFACEIVAAHRGWQSRGHGTVQFDSAATAS 71
Query: 217 RARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEA 396
A L GRLP F + L+VSP+ D++ RA R A L G V E +E+ E
Sbjct: 72 LAAELASSGRLPRFLGSPLSVSPAPADLLPRAPAPSLRASGARLLVGNRVAERELEMAET 131
Query: 397 WEQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGRESILLQLQYAPRCF 576
+ VRVE++P +++++L++ + +YKLEVLF DI C LDG +ILLQL YAPR
Sbjct: 132 LDGVRVEVIPGKRRVDLYLTHDSHRYKLEVLFEDIRNCFRCSLDGTSAILLQLTYAPRIH 191
Query: 577 VRIHG---LEKESNDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCAEIL 747
G + +DR C+ED +F WVR DF+PN S GK ++L + + IL
Sbjct: 192 TAFSGPAVYSRFKDDRLHACKEDAKFTWVRALDFTPNQSFGKCSTLVIKLDEDALMSYIL 251
Query: 748 RKLPFSRALGEXXXXXXXXXXXXXXXXXXXXXD--CSVPYEILYQINSLVHMQKITFRQV 921
LPFS LGE CSV YE+L+++NSLVHM KI + V
Sbjct: 252 NTLPFSGVLGELAISSMDVVGPSSKAVPLVDCPHGCSVSYEVLFRLNSLVHMGKIVAKHV 311
Query: 922 TIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTSPFSKSIIAQN 1101
LF L+ +P ++ +I KM KL STCY+P+QFI+ EL + S SK
Sbjct: 312 NAKLFAFLEQVPLHISRRIFEKMSKLESTCYEPLQFIESELKLTHNALLS--SKREGEGK 369
Query: 1102 MMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPSDAISAKI 1281
+M CYR+ +TPS+IYCLGPE E SNYVVKH S +ASDF+RVTFVDEDWSKL +AISA+I
Sbjct: 370 LMRCYRIHITPSKIYCLGPEEEASNYVVKHHSEYASDFVRVTFVDEDWSKLSVNAISARI 429
Query: 1282 DSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASNDNLTAES 1461
+ G FS+PF+T +Y RILSIL++G I KKFEFLAFSASQLR SVWMFASND+L AES
Sbjct: 430 EQGFFSQPFKTGLYYRILSILKEGFIIGPKKFEFLAFSASQLREGSVWMFASNDSLNAES 489
Query: 1462 IRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGKKYCFSDG 1641
IR+WMGHF IRSVSKCAARMGQLFSSS QT+ E+TT + KY FSDG
Sbjct: 490 IRRWMGHFEEIRSVSKCAARMGQLFSSSRQTVEVRPWDVEEIPDIEVTTNN-TKYIFSDG 548
Query: 1642 IGKISLPFARQIAQKCGLSNT--PSAFQIRYGGYKGVIVSDRKSFWKLSLRRSMLKFESA 1815
IGK+S+ FAR+IA + GL +T PSAFQIR+GGYKGVI D SF LSLR SM KFES
Sbjct: 549 IGKMSVRFAREIAYRIGLDHTNPPSAFQIRFGGYKGVIAVDPSSFRNLSLRPSMRKFESD 608
Query: 1816 NTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEIALRVL 1995
ML++T WS+ QPC++NREI+ LLSTLG++DE+FE MQ D M+ LD+MLT+ E+AL VL
Sbjct: 609 CRMLNITSWSKSQPCYVNREIISLLSTLGIRDEVFELMQQDDMRELDEMLTNKEVALSVL 668
Query: 1996 DTLSGPDIRTAVKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGRVLIGCL 2175
+ + +TA ML+QGY+P SEPYLLM+LKAH++ +L DIRSK +I VPKGRVL+GCL
Sbjct: 669 GKIGSAETKTAADMLLQGYEPISEPYLLMILKAHQDNRLTDIRSKFKIHVPKGRVLLGCL 728
Query: 2176 DETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLHPGDIRVL 2355
DET L YGQVYI++T +E ++ + D T T+VGKV V+KNPCLHPGD+RVL
Sbjct: 729 DETGKLKYGQVYIRITKNNKEQKENEQPYFSEDDGKTVTLVGKVAVSKNPCLHPGDVRVL 788
Query: 2356 QAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPETDAPMDY 2535
+AVYDP + LVDC++FPQ+G+RPHPNECSGGDLDGDLYFV WD+ LIP + DAPMDY
Sbjct: 789 EAVYDPGLHAKKLVDCVVFPQRGERPHPNECSGGDLDGDLYFVTWDDKLIPEKADAPMDY 848
Query: 2536 TPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKCLELANLH 2715
T RPRIMDH V LEEIQ++ VNYM++D+LGAIS HL++AD +P KAR +CL+LA LH
Sbjct: 849 TGARPRIMDHVVTLEEIQQHVVNYMLSDSLGAISNAHLIHADRDPMKARSPECLQLAALH 908
Query: 2716 SMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYHEDLN--S 2889
SMAVDFAKTGAPAE+PR+LRP+ FPDFMER++KPM+ S GV+GKLYRAA S E + +
Sbjct: 909 SMAVDFAKTGAPAELPRSLRPREFPDFMERWDKPMYISNGVLGKLYRAAVSRMESSHALA 968
Query: 2890 ETITSQWVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEILTGNLRNKS 3069
+ S YD +L V +Y Y EKL +LMNYYGAEHEDEILTGN+RN+
Sbjct: 969 SQVQSSPTYDRELAVPGFEEFLEDAEKHYDLYVEKLTTLMNYYGAEHEDEILTGNIRNRL 1028
Query: 3070 AYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFK-CSCPEKDLFKMASAWYQVTYHPDY-R 3243
YL+KDRKRY +MKDR+ V L EEV GWFK C E++ ++ASAWY+V YHPD+ R
Sbjct: 1029 LYLRKDRKRYSDMKDRIFDSVNALHEEVRGWFKNCLKAEEEASRVASAWYRVAYHPDHRR 1088
Query: 3244 PETR-FLSFPWIVSDVLLRIKAARARK 3321
PE + F SFPWI+ D LL IKA ++ +
Sbjct: 1089 PEKKQFWSFPWIICDKLLAIKATKSNR 1115
>gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 1162 bits (3005), Expect = 0.0
Identities = 599/1105 (54%), Positives = 770/1105 (69%), Gaps = 17/1105 (1%)
Frame = +1
Query: 43 RATLHVSNIPHTAVAAELFDYFDASVG--SVYACKIATARRNWKSKGFGRVQFDTFAAAE 216
R TL +++IP TAVA +L D+F++ +G SV+A +I+T R NWKS+GFGRVQF A
Sbjct: 8 RPTLRLTHIPQTAVAKDLLDFFESKLGPDSVFAIEISTDRNNWKSRGFGRVQFAAPQAKS 67
Query: 217 RARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEA 396
A L L LF+ L +S +++DI+ R +RL+ LHAG + + + + E
Sbjct: 68 DALRLSRHDHL-LFKSHSLKLSRTYDDIIPRPIRADHRLDGGVLHAGFMSSDDCLRVLER 126
Query: 397 WEQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGR--ESILLQLQYAPR 570
WE VR IMPER++LE +V GE YKL+ LF DI E+ CC DG ++LL+++YAPR
Sbjct: 127 WEGVRGWIMPERRRLEFWVWTDGECYKLDFLFDDIFETVGCCFDGSACNALLLRVRYAPR 186
Query: 571 CFVRIHG---LEKESNDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCAE 741
+ ++ G K S DR+ +C+E FLWVRTTDFS SIG+S + + + G S ++
Sbjct: 187 IYQKVSGPNVASKFSTDRYHICKEKFDFLWVRTTDFSRIKSIGQSTSFYWEFNAGFSISD 246
Query: 742 ILRKLPFSRA---LGEXXXXXXXXXXXXXXXXXXXXXDCSVPYEILYQINSLVHMQKITF 912
+ LP R D + YEIL+Q+N+LVH QKI+
Sbjct: 247 MSTYLPCYREDIQSPSLEARREFSSPSEIVPLVKFPSDSKLAYEILFQLNALVHTQKISI 306
Query: 913 RQVTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTS-PFSKSI 1089
V DL IL GLP + A+ IL K+ L S CY+PV F+K +L K S+ +
Sbjct: 307 AAVDTDLIGILSGLPVETAVMILQKLRLLQSPCYNPVSFVKAKLPTGKNYRIPLSVSERL 366
Query: 1090 IAQNMMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSKLPSDAI 1269
N+MSC R L+TP++IYCLGPELE +NYVVK+F +ASDF+RVTFV+EDWSKL ++AI
Sbjct: 367 KNHNVMSCRRALITPTKIYCLGPELETANYVVKNFVEYASDFMRVTFVEEDWSKLSANAI 426
Query: 1270 SAKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMFASNDNL 1449
S + GVFS PF+T IY RIL +L++G+ I K+FEFLAFSASQLRSNSVWMFASND +
Sbjct: 427 STGVHLGVFSRPFKTKIYDRILYVLQNGIVIGDKRFEFLAFSASQLRSNSVWMFASNDEV 486
Query: 1450 TAESIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTEDGKKYC 1629
AE IR+WMG F IRS+SKCA+RMGQLFSSSM T+ E+ T DG YC
Sbjct: 487 KAEDIREWMGCFKKIRSISKCASRMGQLFSSSMPTLVVPVQDVEIIDDIEVKT-DGINYC 545
Query: 1630 FSDGIGKISLPFARQIAQKCGLSNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRRSMLKFE 1809
FSDGIGKISLPFARQ+A+KCGL++ PSAFQIRYGGYKGV+ DR SFWK+SLR SMLKFE
Sbjct: 546 FSDGIGKISLPFARQVAEKCGLNHIPSAFQIRYGGYKGVVAVDRNSFWKMSLRDSMLKFE 605
Query: 1810 SANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTDTEIALR 1989
S ML+VTKWSE PCFLNREIV L STLG+KDE+FE MQ +Q+ LL KMLT+ E AL
Sbjct: 606 SKVRMLNVTKWSESMPCFLNREIVTLFSTLGIKDEVFERMQEEQLCLLGKMLTNREAALD 665
Query: 1990 VLDTLSGPDIRTAVKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPKGRVLIG 2169
L +L G + + + ++Q Y+PN +PYL MML+AH E L D++S+CRIFVPKGR+LIG
Sbjct: 666 TLQSLGGVNSKNILVEMLQFYEPNVQPYLSMMLQAHYENLLSDLKSRCRIFVPKGRILIG 725
Query: 2170 CLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCLHPGDIR 2349
CLDET L+YGQVY+ + M K EL+ + ++ + D+ TA ++GKV+VTKNPCLHPGD+R
Sbjct: 726 CLDETGTLNYGQVYLCIKMKKAELECADQSYFRKVDEETAIVIGKVVVTKNPCLHPGDVR 785
Query: 2350 VLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPPETDAPM 2529
VL+AVY+P ++ GLVDCL+FPQKG+RPHPNECSGGDLDGD +F+ WD++LIP +T+ PM
Sbjct: 786 VLEAVYEPQLEEKGLVDCLVFPQKGERPHPNECSGGDLDGDQFFISWDKDLIPCQTEPPM 845
Query: 2530 DYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSKCLELAN 2709
DYT RPRIMDH+V LEEIQK+FV+YMIND LGAIST HLV+AD EP KA CL LA
Sbjct: 846 DYTGRRPRIMDHEVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPDKACSENCLALAT 905
Query: 2710 LHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSYHEDLNS 2889
LHSMAVDFAKTGAPAEMPRAL+P+ FPDFM+R KPM+ S GV+GKLYRA + S
Sbjct: 906 LHSMAVDFAKTGAPAEMPRALKPREFPDFMQRGNKPMYTSSGVLGKLYRATINSTVQTRS 965
Query: 2890 ETI----TSQWVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDEILTGNL 3057
+ + ++ VYD+DL V + Y E++ LM+YY E+EDEILTGN+
Sbjct: 966 KFVWTKEMAELVYDHDLEVNGFESLISVAETHKEMYEERMSLLMSYYDVEYEDEILTGNI 1025
Query: 3058 RNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLF-KMASAWYQVTYHP 3234
NK+ +L +D +RYGEMK+R+++ VK+L+ E WFK SC + D K+ASAWY VTYHP
Sbjct: 1026 YNKAQFLLRDNRRYGEMKERIVLSVKDLQREAKEWFKSSCSKADEHQKLASAWYYVTYHP 1085
Query: 3235 DYRPE-TRFLSFPWIVSDVLLRIKA 3306
+Y E LSFPWIV D+LLR+K+
Sbjct: 1086 NYFQERMNSLSFPWIVGDILLRVKS 1110
>gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 1160 bits (3002), Expect = 0.0
Identities = 601/1111 (54%), Positives = 775/1111 (69%), Gaps = 23/1111 (2%)
Frame = +1
Query: 43 RATLHVSNIPHTAVAAELFDYFDASVG--SVYACKIATARRNWKSKGFGRVQFDTFAAAE 216
R TL ++NIP TAVA +L D+F++ +G SV+A +I+T R NWKS+GFGRVQF A
Sbjct: 8 RPTLRLTNIPQTAVAKDLLDFFESKLGPDSVFAIEISTDRNNWKSRGFGRVQFAAPQAMS 67
Query: 217 RARLLDDEGRLPLFQHARLTVSPSHNDIVVRASEGQNRLEAAALHAGVLVGEGHMEIFEA 396
A L L LF+ L +S +++DI+ R +RL+ LHAG + + + + E
Sbjct: 68 DALRLSRHDHL-LFKSHSLKLSRTYDDIIPRPIRADHRLDGGVLHAGFMSSDDCLRVLER 126
Query: 397 WEQVRVEIMPERKKLELFVDYGGEKYKLEVLFGDILESSSCCLDGR--ESILLQLQYAPR 570
WE VR IMPER++LE +V GE YKL+ LF D+ E+ CC DG ++LL+++YAPR
Sbjct: 127 WEGVRGWIMPERRRLEFWVWTDGECYKLDFLFDDLFETVGCCFDGSACNALLLRVRYAPR 186
Query: 571 CFVRIHG---LEKESNDRFRVCREDIQFLWVRTTDFSPNGSIGKSFYYCLQLSDGLSCAE 741
+ ++ G K S DR+ +C+E FLWVRTTDFS SIG+S + + + G S ++
Sbjct: 187 TYRKVSGPNVASKFSTDRYHICKEKFDFLWVRTTDFSRIKSIGQSTSFYWEFNAGFSISD 246
Query: 742 ILRKLPFSR---------ALGEXXXXXXXXXXXXXXXXXXXXXDCSVPYEILYQINSLVH 894
+ LP R A GE D + YEIL+Q+N+LVH
Sbjct: 247 MSTYLPCYREDIQSPSLEARGEFSSPSEIVPLVKFPS------DSKLAYEILFQLNALVH 300
Query: 895 MQKITFRQVTIDLFDILKGLPSDVAIKILMKMHKLVSTCYDPVQFIKDELSRIKRSSTS- 1071
QKI+ V DL IL LP + A+ IL K+ L S CY+PV F+K +L K
Sbjct: 301 TQKISIAAVDTDLIGILSVLPVETAVMILQKLRLLQSPCYNPVSFVKAKLPTGKNFRIPL 360
Query: 1072 PFSKSIIAQNMMSCYRVLVTPSRIYCLGPELEKSNYVVKHFSAHASDFLRVTFVDEDWSK 1251
S+ + N+MSC+R L+TP++IYCLGPELE +NYVVK+F+ +ASDF+RVTFV+EDWSK
Sbjct: 361 SVSERLKNHNVMSCHRALITPTKIYCLGPELETANYVVKNFAEYASDFMRVTFVEEDWSK 420
Query: 1252 LPSDAISAKIDSGVFSEPFRTAIYTRILSILRDGLPICSKKFEFLAFSASQLRSNSVWMF 1431
L ++AIS + GVFS PF+T IY RILSIL++G+ I K+F+FLAFSASQLRSNSVWMF
Sbjct: 421 LSANAISTGVHLGVFSRPFKTKIYDRILSILQNGIVIGDKRFKFLAFSASQLRSNSVWMF 480
Query: 1432 ASNDNLTAESIRKWMGHFNGIRSVSKCAARMGQLFSSSMQTMNXXXXXXXXXXXXEITTE 1611
ASND + AE IR+WMG F IRS+SKCA+RMGQLFSSSM T+ E+ T
Sbjct: 481 ASNDEVKAEDIREWMGCFKKIRSISKCASRMGQLFSSSMPTLVVPVQDVEIIDDIEVKT- 539
Query: 1612 DGKKYCFSDGIGKISLPFARQIAQKCGLSNTPSAFQIRYGGYKGVIVSDRKSFWKLSLRR 1791
DG YCFSDGIGKISLPFARQ+A+KCGL++ PSAFQIRYGGYKGV+ DR SFWK+SLR
Sbjct: 540 DGINYCFSDGIGKISLPFARQVAEKCGLNHIPSAFQIRYGGYKGVVAVDRNSFWKMSLRD 599
Query: 1792 SMLKFESANTMLSVTKWSEYQPCFLNREIVCLLSTLGVKDEIFESMQHDQMQLLDKMLTD 1971
SMLKFES ML+VTKWSE PCFLNREIV L STLG+KDE+FE MQ +Q+ LL KMLT+
Sbjct: 600 SMLKFESKVRMLNVTKWSESMPCFLNREIVTLFSTLGIKDEVFERMQEEQLCLLGKMLTN 659
Query: 1972 TEIALRVLDTLSGPDIRTAVKMLIQGYKPNSEPYLLMMLKAHREYQLLDIRSKCRIFVPK 2151
E AL L +L G + + + ++Q +PN +PYL MML+AH E L D++S+CRIFVPK
Sbjct: 660 REAALDTLQSLGGVNSKNILVEMLQFDEPNVQPYLSMMLQAHYENLLSDLKSRCRIFVPK 719
Query: 2152 GRVLIGCLDETSVLDYGQVYIKVTMTKEELQKENTNFIKNADQITATIVGKVLVTKNPCL 2331
GR+LIGCLDET L+YGQVY+ + M K EL+ + ++ + D+ TA ++GKV+VTKNPCL
Sbjct: 720 GRILIGCLDETGTLNYGQVYLCIKMKKAELECADQSYFRKVDEETAIVIGKVVVTKNPCL 779
Query: 2332 HPGDIRVLQAVYDPLIDYLGLVDCLIFPQKGKRPHPNECSGGDLDGDLYFVCWDENLIPP 2511
HPGD+RVL+AVY+P ++ GLVDCL+FP+KG+RPHPNECSGGDLDGD +F+ WD++LIP
Sbjct: 780 HPGDVRVLEAVYEPQLEEKGLVDCLVFPEKGERPHPNECSGGDLDGDQFFISWDKDLIPC 839
Query: 2512 ETDAPMDYTPTRPRIMDHDVKLEEIQKYFVNYMINDNLGAISTTHLVYADSEPSKARCSK 2691
+T+ PMDYT RPRIMDH+V LEEIQK+FV+YMIND LGAIST HLV+AD EP KAR
Sbjct: 840 QTEPPMDYTGRRPRIMDHEVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPYKARSEN 899
Query: 2692 CLELANLHSMAVDFAKTGAPAEMPRALRPKIFPDFMERFEKPMFNSPGVIGKLYRAASSY 2871
CL LA LHSMAVDFAKTGAPAEMPRAL+P+ FPDFM+R KPM+ S GV+GKLYRA +
Sbjct: 900 CLALATLHSMAVDFAKTGAPAEMPRALKPREFPDFMQRGNKPMYTSSGVLGKLYRATINS 959
Query: 2872 HEDLNSETI----TSQWVYDYDLLVXXXXXXXXXXXXYYSRYAEKLGSLMNYYGAEHEDE 3039
+ S+ + ++ YD+DL V + Y E++ LM+YY E+EDE
Sbjct: 960 TVQIRSKFVWTKEMAELAYDHDLEVNGFESLISVAETHKEMYEERMSLLMSYYDVEYEDE 1019
Query: 3040 ILTGNLRNKSAYLQKDRKRYGEMKDRMLIGVKNLKEEVDGWFKCSCPEKDLF-KMASAWY 3216
ILTGN+ NK+ +L +D +RYGEMK+R+++ VK+L+ E WFK SC + D K+ASAWY
Sbjct: 1020 ILTGNMYNKAQFLLRDNRRYGEMKERIVLSVKDLQREAKEWFKSSCSKADEHQKLASAWY 1079
Query: 3217 QVTYHPDYRPE-TRFLSFPWIVSDVLLRIKA 3306
VTYHP+Y E LSFPWIV D+LLRIK+
Sbjct: 1080 YVTYHPNYFEERMNSLSFPWIVGDILLRIKS 1110