BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber23_contig00004676
         (2334 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI34982.3| unnamed protein product [Vitis vinifera]              752   0.0  
ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron sp...   752   0.0  
gb|EMJ18282.1| hypothetical protein PRUPE_ppa000515mg [Prunus pe...   731   0.0  
gb|EXC45069.1| Chloroplastic group IIA intron splicing facilitat...   720   0.0  
ref|XP_002517407.1| conserved hypothetical protein [Ricinus comm...   717   0.0  
ref|XP_006296749.1| hypothetical protein CARUB_v10015149mg [Caps...   717   0.0  
ref|NP_186786.2| CRM family member 2 [Arabidopsis thaliana] gi|2...   715   0.0  
ref|XP_006408495.1| hypothetical protein EUTSA_v10019986mg [Eutr...   712   0.0  
ref|XP_004232267.1| PREDICTED: chloroplastic group IIA intron sp...   707   0.0  
gb|AAF24608.1|AC010870_1 unknown protein [Arabidopsis thaliana]       707   0.0  
ref|XP_004297960.1| PREDICTED: uncharacterized protein LOC101297...   703   0.0  
ref|XP_006338519.1| PREDICTED: chloroplastic group IIA intron sp...   701   0.0  
ref|XP_006338518.1| PREDICTED: chloroplastic group IIA intron sp...   701   0.0  
gb|EOY02282.1| CRM family member 2, putative isoform 2 [Theobrom...   700   0.0  
ref|XP_006849108.1| hypothetical protein AMTR_s00028p00245370 [A...   699   0.0  
ref|XP_006431007.1| hypothetical protein CICLE_v10013715mg [Citr...   698   0.0  
ref|XP_006482481.1| PREDICTED: chloroplastic group IIA intron sp...   692   0.0  
ref|XP_006482480.1| PREDICTED: chloroplastic group IIA intron sp...   692   0.0  
ref|XP_006482479.1| PREDICTED: chloroplastic group IIA intron sp...   692   0.0  
ref|XP_006482478.1| PREDICTED: chloroplastic group IIA intron sp...   692   0.0  

>emb|CBI34982.3| unnamed protein product [Vitis vinifera]
          Length = 1028

 Score =  752 bits (1941), Expect = 0.0
 Identities = 410/731 (56%), Positives = 499/731 (68%), Gaps = 29/731 (3%)
 Frame = +1

Query: 145  NAHLLTLPR----FPSPRCALPSQNPR-----------KPLKGXXXXXXXXXXXXVSQSA 279
            N  LLTL R    FPSP     S  P            KP K             + ++A
Sbjct: 23   NPMLLTLCRHHSPFPSPTPTFTSSPPSISPSTFKTLNPKPSK-FILRASNPDAQTLPKTA 81

Query: 280  IQRISEKLRSLGFLEQHPPSSADDRPTTGPGSAGEIFIPTPGEILTHRVGYTIDSSWSTP 459
            IQRI+EKLRSLG+++               GSAGEIF+P P ++  HRVG+TID SWS P
Sbjct: 82   IQRIAEKLRSLGYVDGDESRKVLSSDKPANGSAGEIFVPLPNQLPKHRVGHTIDQSWSLP 141

Query: 460  EHPVPQPGSGVTINRFHHLWTRDKVRKAEARARKDSEPPPTVAELTIPPEELKRLRREGV 639
            E+PVP+PG+G  I RFH L  R +V++ +   RK+ E  PT+AELT+P EEL+RL+  G+
Sbjct: 142  ENPVPEPGTGGVITRFHEL--RKEVKREKKLVRKEDERAPTLAELTLPEEELRRLKGIGI 199

Query: 640  RLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKTGGLVVW 819
            ++ K+LK+GKAGITEGIVNGIHERWRR+E+VKI+CED+C++NMKRTH+ILERKTGGLV+W
Sbjct: 200  QIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKTGGLVIW 259

Query: 820  RSGSIIILYRGVDYKYPCYFHEDK--DKIFNETSLSSGMHNEPTNSQEA---------SL 966
            RSGS IILYRG +YKYP +  ++   +   ++ S  S M+NE  + +E          S 
Sbjct: 260  RSGSYIILYRGANYKYPYFLSDNNLPNDSSHDASSDSQMNNEEHDGKEVCSSGKGDVKSA 319

Query: 967  LPMLXXXXXXXXXXXXXXXXFIVGVGSSKKAHQKIEGELQLEEEADRLLDGLGPRFSDWW 1146
             PM                  I GVG   +   ++ GE QLEEEADRLLDGLGPRF+DWW
Sbjct: 320  GPM--------PANKIAPLSLIQGVGYPTRVRFQLPGEAQLEEEADRLLDGLGPRFTDWW 371

Query: 1147 GCAPLPIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFALGRNTN 1326
            G  PLPIDADLLPAVVPG+R+PFRLLP+G+KPKLT+ EMT+L+RLGRPLPCHFALGRN  
Sbjct: 372  GYDPLPIDADLLPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRRLGRPLPCHFALGRNRK 431

Query: 1327 LQGLAVSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEELKQLTGGTLLSRDREFFVFYRGK 1506
            LQGLA SM+KLWEKCEIAKIA+KRGVQNTNS MMAEELK LTGGTLLSRDREF VFYRGK
Sbjct: 432  LQGLAASMIKLWEKCEIAKIAVKRGVQNTNSEMMAEELKNLTGGTLLSRDREFIVFYRGK 491

Query: 1507 DFLPLVVSSAIEERRNKGNNRPKRITNENLVEALVVXXXXXXXXXXXXXLKKGSEQKQKF 1686
            DFLP  VSSAIE RR  G +R K+  + + +                     G++ ++  
Sbjct: 492  DFLPPAVSSAIEARRKYGIHRGKQKIDHHRLAINAEESELGTSEHASDKDCDGTDDQKTN 551

Query: 1687 ALEGTNSENFALQIIEN---RLSQAIVKVEMSRKRLAELETSVKPKETELDKEAISEEER 1857
            +L        A  ++E    +LS A+ K E + K LAELE +  P++ E+DKE I+EEER
Sbjct: 552  SLSKRRMLRSAEAVVERTNIKLSMALEKKERAEKLLAELEEAQIPQQPEIDKEGITEEER 611

Query: 1858 YMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXXXXXXXXXX 2037
            YMLRKVGLRM  FLLLGRRG+FDGTVENMHLHWKYRELVKIIS   SI+           
Sbjct: 612  YMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVARTLEA 671

Query: 2038 XSGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQRCESLKLHV 2217
             SGGILVAVERVSKGYAII+YRGKNY+RP  LRP TL NKR A+KRSLEAQR ESLKLHV
Sbjct: 672  ESGGILVAVERVSKGYAIIMYRGKNYKRPASLRPQTLLNKREALKRSLEAQRRESLKLHV 731

Query: 2218 LKFSKKISQVK 2250
            L+ ++ I ++K
Sbjct: 732  LRLTRNIDELK 742


>ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Vitis vinifera]
          Length = 1044

 Score =  752 bits (1941), Expect = 0.0
 Identities = 410/731 (56%), Positives = 499/731 (68%), Gaps = 29/731 (3%)
 Frame = +1

Query: 145  NAHLLTLPR----FPSPRCALPSQNPR-----------KPLKGXXXXXXXXXXXXVSQSA 279
            N  LLTL R    FPSP     S  P            KP K             + ++A
Sbjct: 23   NPMLLTLCRHHSPFPSPTPTFTSSPPSISPSTFKTLNPKPSK-FILRASNPDAQTLPKTA 81

Query: 280  IQRISEKLRSLGFLEQHPPSSADDRPTTGPGSAGEIFIPTPGEILTHRVGYTIDSSWSTP 459
            IQRI+EKLRSLG+++               GSAGEIF+P P ++  HRVG+TID SWS P
Sbjct: 82   IQRIAEKLRSLGYVDGDESRKVLSSDKPANGSAGEIFVPLPNQLPKHRVGHTIDQSWSLP 141

Query: 460  EHPVPQPGSGVTINRFHHLWTRDKVRKAEARARKDSEPPPTVAELTIPPEELKRLRREGV 639
            E+PVP+PG+G  I RFH L  R +V++ +   RK+ E  PT+AELT+P EEL+RL+  G+
Sbjct: 142  ENPVPEPGTGGVITRFHEL--RKEVKREKKLVRKEDERAPTLAELTLPEEELRRLKGIGI 199

Query: 640  RLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKTGGLVVW 819
            ++ K+LK+GKAGITEGIVNGIHERWRR+E+VKI+CED+C++NMKRTH+ILERKTGGLV+W
Sbjct: 200  QIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKTGGLVIW 259

Query: 820  RSGSIIILYRGVDYKYPCYFHEDK--DKIFNETSLSSGMHNEPTNSQEA---------SL 966
            RSGS IILYRG +YKYP +  ++   +   ++ S  S M+NE  + +E          S 
Sbjct: 260  RSGSYIILYRGANYKYPYFLSDNNLPNDSSHDASSDSQMNNEEHDGKEVCSSGKGDVKSA 319

Query: 967  LPMLXXXXXXXXXXXXXXXXFIVGVGSSKKAHQKIEGELQLEEEADRLLDGLGPRFSDWW 1146
             PM                  I GVG   +   ++ GE QLEEEADRLLDGLGPRF+DWW
Sbjct: 320  GPM--------PANKIAPLSLIQGVGYPTRVRFQLPGEAQLEEEADRLLDGLGPRFTDWW 371

Query: 1147 GCAPLPIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFALGRNTN 1326
            G  PLPIDADLLPAVVPG+R+PFRLLP+G+KPKLT+ EMT+L+RLGRPLPCHFALGRN  
Sbjct: 372  GYDPLPIDADLLPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRRLGRPLPCHFALGRNRK 431

Query: 1327 LQGLAVSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEELKQLTGGTLLSRDREFFVFYRGK 1506
            LQGLA SM+KLWEKCEIAKIA+KRGVQNTNS MMAEELK LTGGTLLSRDREF VFYRGK
Sbjct: 432  LQGLAASMIKLWEKCEIAKIAVKRGVQNTNSEMMAEELKNLTGGTLLSRDREFIVFYRGK 491

Query: 1507 DFLPLVVSSAIEERRNKGNNRPKRITNENLVEALVVXXXXXXXXXXXXXLKKGSEQKQKF 1686
            DFLP  VSSAIE RR  G +R K+  + + +                     G++ ++  
Sbjct: 492  DFLPPAVSSAIEARRKYGIHRGKQKIDHHRLAINAEESELGTSEHASDKDCDGTDDQKTN 551

Query: 1687 ALEGTNSENFALQIIEN---RLSQAIVKVEMSRKRLAELETSVKPKETELDKEAISEEER 1857
            +L        A  ++E    +LS A+ K E + K LAELE +  P++ E+DKE I+EEER
Sbjct: 552  SLSKRRMLRSAEAVVERTNIKLSMALEKKERAEKLLAELEEAQIPQQPEIDKEGITEEER 611

Query: 1858 YMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXXXXXXXXXX 2037
            YMLRKVGLRM  FLLLGRRG+FDGTVENMHLHWKYRELVKIIS   SI+           
Sbjct: 612  YMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVARTLEA 671

Query: 2038 XSGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQRCESLKLHV 2217
             SGGILVAVERVSKGYAII+YRGKNY+RP  LRP TL NKR A+KRSLEAQR ESLKLHV
Sbjct: 672  ESGGILVAVERVSKGYAIIMYRGKNYKRPASLRPQTLLNKREALKRSLEAQRRESLKLHV 731

Query: 2218 LKFSKKISQVK 2250
            L+ ++ I ++K
Sbjct: 732  LRLTRNIDELK 742


>gb|EMJ18282.1| hypothetical protein PRUPE_ppa000515mg [Prunus persica]
          Length = 1117

 Score =  731 bits (1886), Expect = 0.0
 Identities = 397/710 (55%), Positives = 485/710 (68%), Gaps = 15/710 (2%)
 Frame = +1

Query: 166  PRFPSPRCALPSQNPRKPLKGXXXXXXXXXXXXVSQSAIQRISEKLRSLGFLEQHPPSSA 345
            P F  P+  LPSQNP KP K               +SAIQRI+EKLRSLGF E +     
Sbjct: 25   PFFSFPK-TLPSQNP-KPSKFAIRSSTTGTKTLAPKSAIQRIAEKLRSLGFTENN----- 77

Query: 346  DDRPTTGPGS--AGEIFIPTPGEILTHRVGYTIDSSWSTPEHPVPQPGSGVTINRFHHLW 519
             ++P   P +  AGEIF+P P  +  +RVG+T+DSSWSTPE+PVP+PG+G  I RFH L 
Sbjct: 78   -EKPQPQPDTKYAGEIFVPLPQRLPKYRVGHTLDSSWSTPENPVPEPGTGRAIARFHELR 136

Query: 520  TRDKVRKAEARARKDSEPPPTVAELTIPPEELKRLRREGVRLEKRLKIGKAGITEGIVNG 699
               K +K   +  K  E  PT+AEL++   EL+RL   G+ L K+LKIGKAGITEGIVNG
Sbjct: 137  REVKKQKELEKTGKKEERVPTLAELSLGKGELRRLTTVGIGLRKKLKIGKAGITEGIVNG 196

Query: 700  IHERWRRSELVKIKCEDLCRMNMKRTHEILERKTGGLVVWRSGSIIILYRGVDYKYPCYF 879
            IHE WRRSE+VKI CEDLCRMNMKRTH++LERKTGGLVVWRSGS I+LYRGV+YKYP + 
Sbjct: 197  IHENWRRSEVVKIVCEDLCRMNMKRTHDMLERKTGGLVVWRSGSKIVLYRGVNYKYPYFL 256

Query: 880  HE--DKDKIFN-------ETSLSSGMHNEPTNSQEASLLPMLXXXXXXXXXXXXXXXXFI 1032
             +  D+D   +       +  ++ G+ NE +N   ++++P                   +
Sbjct: 257  RDKVDEDSTIDTSHNALPDAHINDGI-NEISNEVNSAIIPSTTNERAQPM--------LV 307

Query: 1033 VGVGSSKKAHQKIEGELQLEEEADRLLDGLGPRFSDWWGCAPLPIDADLLPAVVPGFRKP 1212
             GVG   +   ++ GE QL EEAD +L+GLGPRF+DWWG  PLP+DADLLPA+VPG+RKP
Sbjct: 308  KGVGLQDRVRFQLPGEAQLTEEADHMLEGLGPRFTDWWGYEPLPVDADLLPAIVPGYRKP 367

Query: 1213 FRLLPFGIKPKLTDREMTILKRLGRPLPCHFALGRNTNLQGLAVSMMKLWEKCEIAKIAI 1392
            FRLLP+G+KPKLTD EMT ++RLGRPLPCHFALGRN NLQGLA S++KLWEKCEIAKIA+
Sbjct: 368  FRLLPYGLKPKLTDDEMTTIRRLGRPLPCHFALGRNRNLQGLASSIVKLWEKCEIAKIAV 427

Query: 1393 KRGVQNTNSVMMAEELKQLTGGTLLSRDREFFVFYRGKDFLPLVVSSAIEERRNKGNNRP 1572
            KRGVQNTN+ +MAEELK+LTGGTLL+RDREF V YRGKDFLP  VSSAIEERR    +  
Sbjct: 428  KRGVQNTNTEIMAEELKRLTGGTLLARDREFIVLYRGKDFLPPAVSSAIEERRKYAIHAE 487

Query: 1573 KRITNENLVEALVVXXXXXXXXXXXXXLKKGSEQKQKFALEGTNSENFALQIIENR---- 1740
            K+I          V              K       K  L     +  + +++ NR    
Sbjct: 488  KQIAE----HGTSVTTRQELEPRTEPENKHEWTNDHKMGLPSAKRKLKSAEVVVNRTSIK 543

Query: 1741 LSQAIVKVEMSRKRLAELETSVKPKETELDKEAISEEERYMLRKVGLRMNAFLLLGRRGV 1920
            LS A+ K   + K LAELE +  P++ E+DKE I++EERYMLRKVGLRM  FLL+GRRGV
Sbjct: 544  LSMALEKKAKAEKLLAELENAAIPQQPEIDKEGITKEERYMLRKVGLRMKPFLLMGRRGV 603

Query: 1921 FDGTVENMHLHWKYRELVKIISKDHSIKXXXXXXXXXXXXSGGILVAVERVSKGYAIIIY 2100
            FDGT+ENMHLHWKYRELVKII  + SI+            SGGILVAVERVSKGYAII+Y
Sbjct: 604  FDGTIENMHLHWKYRELVKIICNEKSIEAVQQVAQTLEAESGGILVAVERVSKGYAIIVY 663

Query: 2101 RGKNYRRPVILRPTTLPNKRVAMKRSLEAQRCESLKLHVLKFSKKISQVK 2250
            RGKNY RP  LRP TL NKR AMKRS+EAQR ESLKLHVL+ ++ I ++K
Sbjct: 664  RGKNYSRPASLRPQTLLNKREAMKRSIEAQRRESLKLHVLRLNENIDELK 713


>gb|EXC45069.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Morus
            notabilis]
          Length = 966

 Score =  720 bits (1859), Expect = 0.0
 Identities = 387/693 (55%), Positives = 472/693 (68%), Gaps = 8/693 (1%)
 Frame = +1

Query: 196  PSQNPRKPLKGXXXXXXXXXXXXVSQSAIQRISEKLRSLGFLEQHPPSSADDRPTTGPGS 375
            P     KPLK             + +SAIQRISEKLRSLGF +++P       P     S
Sbjct: 31   PFSTTPKPLKFTVRSSNADAQTLLPKSAIQRISEKLRSLGFTDENPS------PEPERSS 84

Query: 376  AGEIFIPTPGEILTHRVGYTIDSSWSTPEHPVPQPGSGVTINRFHHLWT------RDKVR 537
            AGEIF+P P  +   RVG+TID+SWS+PE+PVP+PGSG  I RF  L T      R++ +
Sbjct: 85   AGEIFVPLPHRLPKQRVGHTIDASWSSPENPVPEPGSGTAIKRFRELKTEVRRQRREERK 144

Query: 538  KAEARARKDSEPPPTVAELTIPPEELKRLRREGVRLEKRLKIGKAGITEGIVNGIHERWR 717
            ++ A AR++ E  PT+AEL +PPEEL+RLR  G+ L K++K+GKAGITEGIVNGIHERWR
Sbjct: 145  ESAANAREERERVPTLAELRLPPEELRRLRTLGIGLRKKVKVGKAGITEGIVNGIHERWR 204

Query: 718  RSELVKIKCEDLCRMNMKRTHEILERKTGGLVVWRSGSIIILYRGVDYKYPCYFHEDKDK 897
            +SE+VKI+CED+CRMNMKRTH++LE+KTGGLVVWRSGS I+LYRG+ YKYP YF   KD 
Sbjct: 205  QSEVVKIECEDICRMNMKRTHDLLEKKTGGLVVWRSGSKIVLYRGIKYKYP-YFFVGKDA 263

Query: 898  IFNETSLSSGMHNEPTNSQEASLLPMLXXXXXXXXXXXXXXXXFIVGVGSSKKAHQKIEG 1077
                T     + +E  N  + S                      I GVG   +   ++ G
Sbjct: 264  SHTATLPVPDVGDEEQNKTDTSSSIDGVETVAPTPGNKLVQPSLIQGVGLPNRVRFQLPG 323

Query: 1078 ELQLEEEADRLLDGLGPRFSDWWGCAPLPIDADLLPAVVPGFRKPFRLLPFGIKPKLTDR 1257
            E QL EEADRLLDGLGPRF+DWWG  P P+DADLL  +V G+R+PFRLLP+G+ PKLTD 
Sbjct: 324  EAQLAEEADRLLDGLGPRFTDWWGYDPQPVDADLLRPIVHGYRRPFRLLPYGVLPKLTDD 383

Query: 1258 EMTILKRLGRPLPCHFALGRNTNLQGLAVSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEE 1437
            EMT L+RL RPLPCHFALGRN NLQGLA S++KLWEKCE+AKIAIKRGVQNTNS MMAEE
Sbjct: 384  EMTTLRRLARPLPCHFALGRNRNLQGLASSVVKLWEKCEVAKIAIKRGVQNTNSEMMAEE 443

Query: 1438 LKQLTGGTLLSRDREFFVFYRGKDFLPLVVSSAIEERRNKGNNRPKRITNENLVEALVVX 1617
            LK LTGGTLL+RDREF V YRGKDFLP  VSSAIEERR K   + K++  E+        
Sbjct: 444  LKSLTGGTLLARDREFIVLYRGKDFLPSAVSSAIEERR-KYVIQAKKLKTEHQTSVKTEQ 502

Query: 1618 XXXXXXXXXXXXLKKGSEQKQKFALEGTNSE--NFALQIIENRLSQAIVKVEMSRKRLAE 1791
                        L++ +  K++   E         +++    +LS A+ K   + + LAE
Sbjct: 503  DQLGSVVCGASELREINGHKKRLPSEQRKPSVAETSVKGTSIKLSMALEKKAKAEQLLAE 562

Query: 1792 LETSVKPKETELDKEAISEEERYMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYREL 1971
            LE +   ++ E+DKE I++EERYMLRK+GLRM  FLLLGRRGVFDGT+ENMHLHWKYREL
Sbjct: 563  LEKAESRQQPEIDKEGITKEERYMLRKIGLRMKPFLLLGRRGVFDGTIENMHLHWKYREL 622

Query: 1972 VKIISKDHSIKXXXXXXXXXXXXSGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLP 2151
            VK+IS + SI+            SGGILVAVER SKGYAII+YRGKNY RP  LRP TL 
Sbjct: 623  VKVISNEKSIEAVHQVAQTLEAESGGILVAVERESKGYAIIVYRGKNYERPASLRPQTLL 682

Query: 2152 NKRVAMKRSLEAQRCESLKLHVLKFSKKISQVK 2250
             KR AMKRS+EAQR +SLKLHVLK +K I  +K
Sbjct: 683  TKRAAMKRSIEAQRRQSLKLHVLKLTKNIDDLK 715


>ref|XP_002517407.1| conserved hypothetical protein [Ricinus communis]
            gi|223543418|gb|EEF44949.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 1009

 Score =  717 bits (1852), Expect = 0.0
 Identities = 396/704 (56%), Positives = 480/704 (68%), Gaps = 9/704 (1%)
 Frame = +1

Query: 166  PRFPSPRCALPSQNPRKPLKGXXXXXXXXXXXXVSQSAIQRISEKLRSLGFLEQHPPSSA 345
            P FP P+  L  QN + P K             V  SAIQRI++KLRSLGF E +P    
Sbjct: 20   PVFPFPQ-TLILQNRKVPSKSSITIHCSNSKT-VPSSAIQRIADKLRSLGFAEHNPEPHT 77

Query: 346  DDRPTTGPGSAGEIFIPTPGEILTHRVGYTIDSSWSTPEHPVPQPGSGVTINRFHHLWTR 525
             +   T     GEIFIP P E+  +RVG+T+D SWSTPE+PVP+PGSG  I R+H L  R
Sbjct: 78   RNSAETKQRE-GEIFIPLPNELSKYRVGHTLDPSWSTPENPVPRPGSGNAILRYHEL--R 134

Query: 526  DKVRKAEARARKDSEPPPTVAELTIPPEELKRLRREGVRLEKRLKIGKAGITEGIVNGIH 705
             +V+K E   +K     PT+AEL++  EEL+RLRR G+  +++LK+GKAGITEGIVNGIH
Sbjct: 135  KQVKK-EREDKKREAKVPTLAELSLSEEELRRLRRIGIAEKRKLKVGKAGITEGIVNGIH 193

Query: 706  ERWRRSELVKIKCEDLCRMNMKRTHEILERKTGGLVVWRSGSIIILYRGVDYKYPCYFHE 885
            ERWRRSE+VKI CEDLCRMNMKRTH++LERKTGGLVVWR+GS I+LYRGV+Y YP +  +
Sbjct: 194  ERWRRSEVVKIVCEDLCRMNMKRTHDLLERKTGGLVVWRAGSKIVLYRGVNYIYPYFLSD 253

Query: 886  DKDKIFNETSLSSGM----HNEPTNSQEASLLPMLXXXXXXXXXXXXXXXXFIVGVGSSK 1053
            +  +  N+TS+ +      HN+    +  S                      I GVG   
Sbjct: 254  NTTE--NDTSIDAVQDTHKHNDSDKIKSCSSSVDGVKFSGPSPTNKAVRPALIQGVGLPN 311

Query: 1054 KAHQKIEGELQLEEEADRLLDGLGPRFSDWWGCAPLPIDADLLPAVVPGFRKPFRLLPFG 1233
            +   ++ GE QL EE D LL+GLGPRFSDWWG  PLP+DADLLPA+VPG++KPFRLLP+G
Sbjct: 312  RVRFQLPGEAQLAEEVDSLLEGLGPRFSDWWGYEPLPVDADLLPAIVPGYQKPFRLLPYG 371

Query: 1234 IKPKLTDREMTILKRLGRPLPCHFALGRNTNLQGLAVSMMKLWEKCEIAKIAIKRGVQNT 1413
            IKP LT+ EMT LKRLGRPLPCHF LGRN  LQGLA S++KLWEKCEIAKIA+KRGVQNT
Sbjct: 372  IKPILTNDEMTTLKRLGRPLPCHFVLGRNRKLQGLAASIIKLWEKCEIAKIAVKRGVQNT 431

Query: 1414 NSVMMAEELKQLTGGTLLSRDREFFVFYRGKDFLPLVVSSAIEERRNKGNNRPK-RITNE 1590
            NS MMAEELK+LTGGTLLSRDREF V YRGKDFLP  VSSAI+ERRN   N  K R  N 
Sbjct: 432  NSEMMAEELKRLTGGTLLSRDREFIVLYRGKDFLPSAVSSAIKERRNHVFNVAKERTDNS 491

Query: 1591 NLVE-ALVVXXXXXXXXXXXXXLKKGSEQKQKFALEGTNSENFALQIIEN---RLSQAIV 1758
               E A                 +     +Q + L      +F  + I+    RLS A+ 
Sbjct: 492  TSAETAKEAEDVEDGTSNSGSQDEFHGNNEQSYDLSKQRKLSFTKEAIKRTSIRLSMALE 551

Query: 1759 KVEMSRKRLAELETSVKPKETELDKEAISEEERYMLRKVGLRMNAFLLLGRRGVFDGTVE 1938
            K   + K LAE+E S   ++ E+DKE I++EERYMLRKVGL+M  FLL+GRRGVFDGT+E
Sbjct: 552  KKAKAVKLLAEIENSEMSQQPEIDKEGITDEERYMLRKVGLKMKPFLLIGRRGVFDGTIE 611

Query: 1939 NMHLHWKYRELVKIISKDHSIKXXXXXXXXXXXXSGGILVAVERVSKGYAIIIYRGKNYR 2118
            NMHLHWKYRELVKII K+ S+             SGGILVAVERVSKGYAI++YRGKNY+
Sbjct: 612  NMHLHWKYRELVKIICKERSLNAVHEVAQSLEAESGGILVAVERVSKGYAIVVYRGKNYQ 671

Query: 2119 RPVILRPTTLPNKRVAMKRSLEAQRCESLKLHVLKFSKKISQVK 2250
            RP +LRP TL +KR AMKRSLEAQR ESLKLHVL+ ++ I+ +K
Sbjct: 672  RPALLRPPTLLSKREAMKRSLEAQRRESLKLHVLRLTRNINDLK 715


>ref|XP_006296749.1| hypothetical protein CARUB_v10015149mg [Capsella rubella]
            gi|482565458|gb|EOA29647.1| hypothetical protein
            CARUB_v10015149mg [Capsella rubella]
          Length = 1021

 Score =  717 bits (1850), Expect = 0.0
 Identities = 392/720 (54%), Positives = 481/720 (66%), Gaps = 16/720 (2%)
 Frame = +1

Query: 160  TLPRFPSPRCALPSQNPRKPLKGXXXXXXXXXXXXVSQSAIQRISEKLRSLGFLEQHPPS 339
            T P FP P+  +   N R+                + QSAIQRI+EKLRSLGF+E++  S
Sbjct: 24   TFPPFPIPQTLISRCNVRRA-NSFVVRSSSSDRKTLPQSAIQRIAEKLRSLGFVEENHES 82

Query: 340  SADDRPTTG----PGSAGEIFIPTPGEILTHRVGYTIDSSWSTPEHPVPQPGSGVTINRF 507
             A  R TTG      S GEIF+P P ++  +RVG+TID+SWSTP +PVP PGSG  I+R+
Sbjct: 83   PA--RNTTGVEYGKNSPGEIFVPLPKQLPINRVGHTIDTSWSTPSYPVPNPGSGTAISRY 140

Query: 508  HHLWTRDKVRKAEARA-RKDSEPPPTVAELTIPPEELKRLRREGVRLEKRLKIGKAGITE 684
            H L    +V K E    RK  E  P++AELT+P  EL+RLR  G+RL K+LKIGKAGITE
Sbjct: 141  HEL---KRVWKKETEIERKKQEKVPSLAELTLPAAELRRLRSAGIRLTKKLKIGKAGITE 197

Query: 685  GIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKTGGLVVWRSGSIIILYRGVDYK 864
            GIVNGIHERWR +E+VKI CED+ RMNMKRTH++LE KTGGLV+WRSGS I+LYRGV+Y+
Sbjct: 198  GIVNGIHERWRTTEVVKIVCEDISRMNMKRTHDVLETKTGGLVIWRSGSKILLYRGVNYQ 257

Query: 865  YPCYFHEDKD----KIFNETSLSSGMHNEPTNSQEASLLPMLXXXXXXXXXXXXXXXXFI 1032
            YP YF  D+D          S  S M  E  +S++                        I
Sbjct: 258  YP-YFVSDRDLGHDSSVETASGGSSMDQEVVDSRDKQ---STAESSSLSVTSKTVKPLLI 313

Query: 1033 VGVGSSKKAHQKIEGELQLEEEADRLLDGLGPRFSDWWGCAPLPIDADLLPAVVPGFRKP 1212
             GVGS  K   ++ GE+QL EEAD+LL+GLGPRF+DWW   PLP+D DLLPAVVP +R+P
Sbjct: 314  QGVGSPDKVRFQLPGEVQLVEEADQLLEGLGPRFTDWWAYDPLPVDGDLLPAVVPDYRRP 373

Query: 1213 FRLLPFGIKPKLTDREMTILKRLGRPLPCHFALGRNTNLQGLAVSMMKLWEKCEIAKIAI 1392
            FRLLP+G+ PKLTD EMT ++RLGRPLPCHFALGRN NLQGLAV+++KLWEKCE+AKIA+
Sbjct: 374  FRLLPYGVSPKLTDDEMTTIRRLGRPLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAV 433

Query: 1393 KRGVQNTNSVMMAEELKQLTGGTLLSRDREFFVFYRGKDFLPLVVSSAIEERR------- 1551
            KRGVQNTNS +MAEELK LTGGTL+SRD++F V YRGKDFLP  VSSAIEERR       
Sbjct: 434  KRGVQNTNSELMAEELKWLTGGTLISRDKDFIVLYRGKDFLPFAVSSAIEERRRQTMIME 493

Query: 1552 NKGNNRPKRITNENLVEALVVXXXXXXXXXXXXXLKKGSEQKQKFALEGTNSENFALQII 1731
            N   +  K   NE++++                  KK   Q          S    L+  
Sbjct: 494  NSSAHGNKMTKNEDVIKPQAA---TDDTELEEAEYKKDHVQTHHMKSRQRKSPEAILEKT 550

Query: 1732 ENRLSQAIVKVEMSRKRLAELETSVKPKETELDKEAISEEERYMLRKVGLRMNAFLLLGR 1911
              +LS A+ K   + K LAELE+   P+++ +DKE I+++E+YMLRK+GL+M  FLLLGR
Sbjct: 551  SIKLSMALEKKANAEKILAELESRESPQQSNIDKEGITDDEKYMLRKIGLKMKPFLLLGR 610

Query: 1912 RGVFDGTVENMHLHWKYRELVKIISKDHSIKXXXXXXXXXXXXSGGILVAVERVSKGYAI 2091
            RGVFDGT+ENMHLHWKYRELVKII  +HSI+            SGGILVAVE VSKGYAI
Sbjct: 611  RGVFDGTIENMHLHWKYRELVKIICNEHSIEAAHEVAEILEAESGGILVAVEMVSKGYAI 670

Query: 2092 IIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQRCESLKLHVLKFSKKISQVKDDSYVDS 2271
            I+YRGKNY RP  LRP TL +KR A+KRS+EAQR +SLKLHVLK S  I ++      DS
Sbjct: 671  IVYRGKNYERPSCLRPQTLLSKREALKRSVEAQRRKSLKLHVLKLSNNIDELNRQLVEDS 730


>ref|NP_186786.2| CRM family member 2 [Arabidopsis thaliana] gi|22531018|gb|AAM97013.1|
            unknown protein [Arabidopsis thaliana]
            gi|37202002|gb|AAQ89616.1| At3g01370 [Arabidopsis
            thaliana] gi|332640136|gb|AEE73657.1| CRM family member 2
            [Arabidopsis thaliana]
          Length = 1011

 Score =  715 bits (1845), Expect = 0.0
 Identities = 382/677 (56%), Positives = 468/677 (69%), Gaps = 10/677 (1%)
 Frame = +1

Query: 271  QSAIQRISEKLRSLGFLEQH--PPSSADDRPTTGPGSAGEIFIPTPGEILTHRVGYTIDS 444
            QSAIQRI+EKLRSLGF+E+    P+       +G  S GEIF+P P ++  HRVG+TID+
Sbjct: 57   QSAIQRIAEKLRSLGFVEEKHDSPTRRITGEESGKNSPGEIFVPLPKQLPIHRVGHTIDT 116

Query: 445  SWSTPEHPVPQPGSGVTINRFHHLWTRDKVRKAEARA-RKDSEPPPTVAELTIPPEELKR 621
            SWSTP +PVP+PGSG  I+R+H L    +V K E    RK  E  P++AELT+PP EL+R
Sbjct: 117  SWSTPSYPVPKPGSGTAISRYHEL---KRVWKKETEMERKKEEKVPSLAELTLPPAELRR 173

Query: 622  LRREGVRLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKT 801
            LR  G+RL K+LKIGKAGITEGIVNGIHERWR +E+VKI CED+ RMNMKRTH++LE KT
Sbjct: 174  LRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVLETKT 233

Query: 802  GGLVVWRSGSIIILYRGVDYKYPCYFHEDKDKIFNETSLSSGMHNEPTNSQEASLLPMLX 981
            GGLV+WRSGS I+LYRGV+Y+YP YF  D+D      S +S M     +S+E      + 
Sbjct: 234  GGLVIWRSGSKILLYRGVNYQYP-YFVSDRDLAHEAASGASSMDQGVVDSREKQ---SIA 289

Query: 982  XXXXXXXXXXXXXXXFIVGVGSSKKAHQKIEGELQLEEEADRLLDGLGPRFSDWWGCAPL 1161
                              GVGS  K   ++ GE+QL EEADRLL+GLGPRF+DWW   PL
Sbjct: 290  ESSAPSITNKMVKPMLTQGVGSPDKVRFQLPGEVQLVEEADRLLEGLGPRFTDWWAYDPL 349

Query: 1162 PIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFALGRNTNLQGLA 1341
            P+D DLLPAVVP +R+PFRLLP+G+ PKLTD EMT ++RLGRPLPCHFALGRN NLQGLA
Sbjct: 350  PVDGDLLPAVVPDYRRPFRLLPYGVSPKLTDDEMTTIRRLGRPLPCHFALGRNRNLQGLA 409

Query: 1342 VSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEELKQLTGGTLLSRDREFFVFYRGKDFLPL 1521
            V+++KLWEKCE+AKIA+KRGVQNTNS +MAEELK LTGGTL+SRD++F V YRGKDFLP 
Sbjct: 410  VAIVKLWEKCELAKIAVKRGVQNTNSELMAEELKWLTGGTLISRDKDFIVLYRGKDFLPS 469

Query: 1522 VVSSAIEERR-------NKGNNRPKRITNENLVEALVVXXXXXXXXXXXXXLKKGSEQKQ 1680
             VSSAIEERR       N   +  K   NE  ++   V              +K   Q  
Sbjct: 470  AVSSAIEERRRQTMIMENSSVHGNKLTENEEEIKPRAVKEDIELEAKD----QKDHIQTH 525

Query: 1681 KFALEGTNSENFALQIIENRLSQAIVKVEMSRKRLAELETSVKPKETELDKEAISEEERY 1860
            +      NS    L+    +LS A+ K   + K LA+LE    P+ +++DKE I+ +E+Y
Sbjct: 526  QMKSRQRNSPEAILEKTSMKLSMALEKKANAEKVLADLENRESPQLSDIDKEGITNDEKY 585

Query: 1861 MLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXXXXXXXXXXX 2040
            MLRK+GL+M  FLLLGRRGVFDGT+ENMHLHWKYRELVKII  ++SI+            
Sbjct: 586  MLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAE 645

Query: 2041 SGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQRCESLKLHVL 2220
            SGGILVAVE VSKGYAII+YRGKNY RP  LRP TL +KR A+KRS+EAQR +SLKLHVL
Sbjct: 646  SGGILVAVEMVSKGYAIIVYRGKNYERPQCLRPQTLLSKREALKRSVEAQRRKSLKLHVL 705

Query: 2221 KFSKKISQVKDDSYVDS 2271
            K S  I ++      DS
Sbjct: 706  KLSNNIEELNRQLVEDS 722


>ref|XP_006408495.1| hypothetical protein EUTSA_v10019986mg [Eutrema salsugineum]
            gi|557109641|gb|ESQ49948.1| hypothetical protein
            EUTSA_v10019986mg [Eutrema salsugineum]
          Length = 998

 Score =  712 bits (1839), Expect = 0.0
 Identities = 381/692 (55%), Positives = 474/692 (68%), Gaps = 25/692 (3%)
 Frame = +1

Query: 271  QSAIQRISEKLRSLGFLEQ-HPPSSADDRPTTGPGSAGEIFIPTPGEILTHRVGYTIDSS 447
            QSAIQRI++KLRSLGF E+ H   +  +   +G  S GEIF+P P ++  HRVG+TID+S
Sbjct: 59   QSAIQRIADKLRSLGFAEEKHDTKTTGEE--SGNNSPGEIFVPLPNQLPIHRVGHTIDTS 116

Query: 448  WSTPEHPVPQPGSGVTINRFHHL---WTRDKVRKAEARARKDSEPPPTVAELTIPPEELK 618
            WSTP +PVP+PGSG  I+R+H L   W ++K  K E   RK+ E  P++AELT+PP EL+
Sbjct: 117  WSTPSYPVPKPGSGTAISRYHELKRVWKKEK--KVE---RKNEEKVPSLAELTLPPAELR 171

Query: 619  RLRREGVRLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERK 798
            RLR  G+RL K+LKIGKAGITEGIVNGIHERWR +E+VKI CED+ RMNMKRTH++LE K
Sbjct: 172  RLRSAGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVLETK 231

Query: 799  TGGLVVWRSGSIIILYRGVDYKYPCYFHEDKDK------------------IFNETSLSS 924
            TGGLV+WRSGS I+LYRGV+Y+YP YF  D+D                   + +     S
Sbjct: 232  TGGLVIWRSGSKILLYRGVNYQYP-YFVSDQDLAHDSSVETASGASSMIQGVVDSRDKQS 290

Query: 925  GMHNEPTNSQEASLLPMLXXXXXXXXXXXXXXXXFIVGVGSSKKAHQKIEGELQLEEEAD 1104
               + PT+     + P+L                 + GVGS  K   ++ GE+QL EEAD
Sbjct: 291  TAQSSPTSISNKMIKPLL-----------------MQGVGSPDKVRFQLPGEVQLVEEAD 333

Query: 1105 RLLDGLGPRFSDWWGCAPLPIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLG 1284
            RLL+GLGPRF+DWW   PLP+DADLLPA+VP +R+PFRLLP+G+ PKLTD EMT L+RLG
Sbjct: 334  RLLEGLGPRFTDWWAYDPLPVDADLLPAIVPEYRRPFRLLPYGLSPKLTDDEMTTLRRLG 393

Query: 1285 RPLPCHFALGRNTNLQGLAVSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEELKQLTGGTL 1464
            RPLPCHFALGRN NLQGLAV+++KLWEKCE+ KIA+KRGVQNTNS +MAEELK LTGGTL
Sbjct: 394  RPLPCHFALGRNRNLQGLAVAIVKLWEKCEVVKIAVKRGVQNTNSELMAEELKWLTGGTL 453

Query: 1465 LSRDREFFVFYRGKDFLPLVVSSAIEERRNKGNNRPKRITNENLV---EALVVXXXXXXX 1635
            +SRD++F V YRGKDFLP  VSSAIEERR +     K   + N +   E  +        
Sbjct: 454  ISRDKDFIVLYRGKDFLPSAVSSAIEERRRQTMIMEKSSVHGNKLTKNEKEIQPQAPTDD 513

Query: 1636 XXXXXXLKKGSEQKQKFALEGTNSENFALQIIENRLSQAIVKVEMSRKRLAELETSVKPK 1815
                   KK   Q  +       S   +L+    +LS A+ K   + K LAELE    P+
Sbjct: 514  IEPAAEYKKDHVQTHQMKPRQRKSPEASLERTSIKLSMALEKKANAEKILAELENRESPQ 573

Query: 1816 ETELDKEAISEEERYMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDH 1995
            ++++DKE I+++E+YMLRK+GL+M  FLLLGRRGVFDGT+ENMHLHWKYRELVKII  + 
Sbjct: 574  QSDIDKEGITDDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEK 633

Query: 1996 SIKXXXXXXXXXXXXSGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKR 2175
            SI+            SGGILVAVE VSKGYAII+YRGKNY RP  LRP TL +KR A+KR
Sbjct: 634  SIESAREVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYERPPCLRPQTLLSKREALKR 693

Query: 2176 SLEAQRCESLKLHVLKFSKKISQVKDDSYVDS 2271
            S+EAQR +SLKLHVLK S  I ++      DS
Sbjct: 694  SVEAQRRKSLKLHVLKLSDNIEELNRQLVKDS 725


>ref|XP_004232267.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Solanum lycopersicum]
          Length = 1049

 Score =  707 bits (1826), Expect = 0.0
 Identities = 389/730 (53%), Positives = 487/730 (66%), Gaps = 26/730 (3%)
 Frame = +1

Query: 175  PSPRCAL----PSQNPRK--PLKGXXXXXXXXXXXXVSQSAIQRISEKLRSLGFLEQHPP 336
            PSP  +L    PS +P+   P               + +SAI+RI++KLRSLGF+EQ   
Sbjct: 20   PSPSHSLFSSTPSLSPKPFFPRDSLPVFAASPDTEALPESAIRRIADKLRSLGFVEQPKN 79

Query: 337  SSADDRPTTG---PGSAGEIFIPTPGEILTHRVGYTIDSSWSTPEHPVPQPGSGVTINRF 507
                +   +      S G+IF+P P ++  +RVG+T+D+SWSTPE+PVPQPG G +I +F
Sbjct: 80   QETQENALSSNPTANSPGQIFVPLPTQLPKYRVGHTLDTSWSTPENPVPQPGLGKSIQKF 139

Query: 508  HHLWTRDKVRKAEARARKDS-----EPPPTVAELTIPPEELKRLRREGVRLEKRLKIGKA 672
            H L  RD+  K + + R  +     E  P++AELT+P EEL+RLR  G+ L K+LKIGKA
Sbjct: 140  HEL--RDEFLKEKDKERLKNKEYKKERAPSLAELTLPAEELRRLRTVGIALRKKLKIGKA 197

Query: 673  GITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKTGGLVVWRSGSIIILYRG 852
            GITEGIVNGIHERWRR ELVKI CED+CR+NMKRTHE+LE+KTGGLV+WRSGS IILYRG
Sbjct: 198  GITEGIVNGIHERWRRIELVKITCEDICRLNMKRTHELLEKKTGGLVIWRSGSNIILYRG 257

Query: 853  VDYKYPCYFHEDKDKIFNETS-------LSSGMHNEPTNSQEASLLPMLXXXXXXXXXXX 1011
             DYKYP YF E+    F   S       L  G     TNS     +              
Sbjct: 258  ADYKYP-YFSENS---FENNSAQDANPDLFMGAEEHMTNSSGIDAVKS-------DASDR 306

Query: 1012 XXXXXFIVGVGSSKKAHQKIEGELQLEEEADRLLDGLGPRFSDWWGCAPLPIDADLLPAV 1191
                  I GVGS  +   ++ GE +  EEAD+LL+GLGPRF+DWWGC PLPIDADLLPA+
Sbjct: 307  KSPPRVIQGVGSPDRVRFELPGEAEHTEEADKLLEGLGPRFTDWWGCEPLPIDADLLPAI 366

Query: 1192 VPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFALGRNTNLQGLAVSMMKLWEKC 1371
            VPG+++PFRLLP+G+KPKLT+ EMT L+RLGRPLPCHF LGRN  LQGLA +++KLWEKC
Sbjct: 367  VPGYKRPFRLLPYGVKPKLTNDEMTTLRRLGRPLPCHFVLGRNRKLQGLAAAIVKLWEKC 426

Query: 1372 EIAKIAIKRGVQNTNSVMMAEELKQLTGGTLLSRDREFFVFYRGKDFLPLVVSSAIEERR 1551
            EIAK+A+KRGVQNTNS +M EELK LTGGTLLSRDREF VFYRGKDFLP  VSSAIEERR
Sbjct: 427  EIAKVAVKRGVQNTNSELMVEELKWLTGGTLLSRDREFIVFYRGKDFLPSAVSSAIEERR 486

Query: 1552 NKGNNRPKRI-TNENLVEA----LVVXXXXXXXXXXXXXLKKGSEQKQKFALEGTNSENF 1716
             +     KR   N ++  A                     +KG ++K+K       S   
Sbjct: 487  KQVFEEEKRNGFNSSVANAKERKQSTTESVSDDGHAHRNNQKGVQEKKKL-----TSMEA 541

Query: 1717 ALQIIENRLSQAIVKVEMSRKRLAELETSVKPKETELDKEAISEEERYMLRKVGLRMNAF 1896
            A++   ++L+ A+ K   + K L ELE    P+++++DKE I+EEER+MLRK+GLRM  F
Sbjct: 542  AIKRTADKLTTALEKKAEAEKLLLELEEDEVPQQSDMDKEGITEEERFMLRKIGLRMKPF 601

Query: 1897 LLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXXXXXXXXXXXSGGILVAVERVS 2076
            LLLGRRGVFDGTVENMHLHWKYRELVK+I+   +I+            SGGILVAVERV+
Sbjct: 602  LLLGRRGVFDGTVENMHLHWKYRELVKVITGRKNIEEVHQIARMLEAESGGILVAVERVN 661

Query: 2077 KGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQRCESLKLHVLKFSKKISQVKDD 2256
            KGYAII+YRGKNY RP  LRP TL +KR AMKRS+EAQR +SLKLHVLK ++ I  ++  
Sbjct: 662  KGYAIIVYRGKNYERPASLRPQTLLSKREAMKRSIEAQRRQSLKLHVLKLTQNIEALQSR 721

Query: 2257 SYVDSTVEHM 2286
               +  + H+
Sbjct: 722  LAKNEEISHI 731


>gb|AAF24608.1|AC010870_1 unknown protein [Arabidopsis thaliana]
          Length = 1020

 Score =  707 bits (1825), Expect = 0.0
 Identities = 382/686 (55%), Positives = 468/686 (68%), Gaps = 19/686 (2%)
 Frame = +1

Query: 271  QSAIQRISEKLRSLGFLEQH--PPSSADDRPTTGPGSAGEIFIPTPGEILTHRVGYTIDS 444
            QSAIQRI+EKLRSLGF+E+    P+       +G  S GEIF+P P ++  HRVG+TID+
Sbjct: 57   QSAIQRIAEKLRSLGFVEEKHDSPTRRITGEESGKNSPGEIFVPLPKQLPIHRVGHTIDT 116

Query: 445  SWSTPEHPVPQPGSGVTINRFHHLWTRDKVRKAEARA-RKDSEPPPTVAELTIPPEELKR 621
            SWSTP +PVP+PGSG  I+R+H L    +V K E    RK  E  P++AELT+PP EL+R
Sbjct: 117  SWSTPSYPVPKPGSGTAISRYHEL---KRVWKKETEMERKKEEKVPSLAELTLPPAELRR 173

Query: 622  LRREGVRLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKT 801
            LR  G+RL K+LKIGKAGITEGIVNGIHERWR +E+VKI CED+ RMNMKRTH++LE KT
Sbjct: 174  LRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVLETKT 233

Query: 802  GGLVVWRSGSIIILYRGVDYKYPCYFHEDKDKIFNETSLSSGMHNEPTNSQEASLLPMLX 981
            GGLV+WRSGS I+LYRGV+Y+YP YF  D+D      S +S M     +S+E      + 
Sbjct: 234  GGLVIWRSGSKILLYRGVNYQYP-YFVSDRDLAHEAASGASSMDQGVVDSREKQ---SIA 289

Query: 982  XXXXXXXXXXXXXXXFIVGVGSSKKAHQKIEGELQLEEEADRLLDGLGPRFSDWWGCAPL 1161
                              GVGS  K   ++ GE+QL EEADRLL+GLGPRF+DWW   PL
Sbjct: 290  ESSAPSITNKMVKPMLTQGVGSPDKVRFQLPGEVQLVEEADRLLEGLGPRFTDWWAYDPL 349

Query: 1162 PIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFALGRNTNLQGLA 1341
            P+D DLLPAVVP +R+PFRLLP+G+ PKLTD EMT ++RLGRPLPCHFALGRN NLQGLA
Sbjct: 350  PVDGDLLPAVVPDYRRPFRLLPYGVSPKLTDDEMTTIRRLGRPLPCHFALGRNRNLQGLA 409

Query: 1342 VSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEEL---------KQLTGGTLLSRDREFFVF 1494
            V+++KLWEKCE+AKIA+KRGVQNTNS +MAEEL         K LTGGTL+SRD++F V 
Sbjct: 410  VAIVKLWEKCELAKIAVKRGVQNTNSELMAEELKVVGLLLVIKWLTGGTLISRDKDFIVL 469

Query: 1495 YRGKDFLPLVVSSAIEERR-------NKGNNRPKRITNENLVEALVVXXXXXXXXXXXXX 1653
            YRGKDFLP  VSSAIEERR       N   +  K   NE  ++   V             
Sbjct: 470  YRGKDFLPSAVSSAIEERRRQTMIMENSSVHGNKLTENEEEIKPRAVKEDIELEAKD--- 526

Query: 1654 LKKGSEQKQKFALEGTNSENFALQIIENRLSQAIVKVEMSRKRLAELETSVKPKETELDK 1833
             +K   Q  +      NS    L+    +LS A+ K   + K LA+LE    P+ +++DK
Sbjct: 527  -QKDHIQTHQMKSRQRNSPEAILEKTSMKLSMALEKKANAEKVLADLENRESPQLSDIDK 585

Query: 1834 EAISEEERYMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXX 2013
            E I+ +E+YMLRK+GL+M  FLLLGRRGVFDGT+ENMHLHWKYRELVKII  ++SI+   
Sbjct: 586  EGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAH 645

Query: 2014 XXXXXXXXXSGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQR 2193
                     SGGILVAVE VSKGYAII+YRGKNY RP  LRP TL +KR A+KRS+EAQR
Sbjct: 646  KVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYERPQCLRPQTLLSKREALKRSVEAQR 705

Query: 2194 CESLKLHVLKFSKKISQVKDDSYVDS 2271
             +SLKLHVLK S  I ++      DS
Sbjct: 706  RKSLKLHVLKLSNNIEELNRQLVEDS 731


>ref|XP_004297960.1| PREDICTED: uncharacterized protein LOC101297928 [Fragaria vesca
            subsp. vesca]
          Length = 1169

 Score =  703 bits (1814), Expect = 0.0
 Identities = 381/701 (54%), Positives = 478/701 (68%), Gaps = 9/701 (1%)
 Frame = +1

Query: 178  SPRCALPSQNPRKPLKGXXXXXXXXXXXXVSQSAIQRISEKLRSLGFLEQHPPSSADDRP 357
            SP  + P   P KP +              + SAIQRI+EKLRSLGF E +  +  D +P
Sbjct: 24   SPFFSFPK--PPKPSQFTIRSSAADSKTLAANSAIQRIAEKLRSLGFTEDN--NKPDSKP 79

Query: 358  TTGPGSAGEIFIPTPGEILTHRVGYTIDSSWSTPEHPVPQPGSGVTINRFHHLWTR---- 525
              GP SAGEIF+P P  +  +RVG+TID SWSTPE PVP PG+G  I+RFH +       
Sbjct: 80   --GPSSAGEIFVPLPETLPKYRVGHTIDPSWSTPEKPVPAPGTGRAISRFHEMRRELKRL 137

Query: 526  DKVRKAEAR--ARKDSEPPPTVAELTIPPEELKRLRREGVRLEKRLKIGKAGITEGIVNG 699
            ++V + E +   +K  E  PT+AE+++   EL+RLR  G+ L+K++++GKAGITEGIVNG
Sbjct: 138  EEVEEMERKKEGKKKEEKVPTLAEMSLSTAELRRLRTVGIELKKKVRVGKAGITEGIVNG 197

Query: 700  IHERWRRSELVKIKCEDLCRMNMKRTHEILERKTGGLVVWRSGSIIILYRGVDYKYPCYF 879
            IHE WRRSE+VK+ CEDLCR+NMKRTH++LERKTGGLVVWRSG+ IILYRGV+YKYP YF
Sbjct: 198  IHENWRRSEVVKLVCEDLCRLNMKRTHDLLERKTGGLVVWRSGAKIILYRGVNYKYP-YF 256

Query: 880  HEDKDKIFNETSLSSGMHNEPTNSQEASLLPMLXXXXXXXXXXXXXXXXFIVGVGSSKKA 1059
             + K +  + +  S         + EA+ +                    I GVG + + 
Sbjct: 257  LKGKKREDSTSDDSGDAVVNAGGTDEANSVT------GPSPTDEKTQPALIQGVGLANRF 310

Query: 1060 HQKIEGELQLEEEADRLLDGLGPRFSDWWGCAPLPIDADLLPAVVPGFRKPFRLLPFGIK 1239
              ++ GE +L EEADR+L+GLGPRF+DWWG  PLP+D DLLPAVVPG+RKPFRLLP+G++
Sbjct: 311  RFQLPGEAELAEEADRMLEGLGPRFNDWWGYEPLPVDGDLLPAVVPGYRKPFRLLPYGLQ 370

Query: 1240 PKLTDREMTILKRLGRPLPCHFALGRNTNLQGLAVSMMKLWEKCEIAKIAIKRGVQNTNS 1419
            PKLTD EMT ++RL RPLP HFALGRN  LQGLA S++KLWEKCEIAK+A+KRGVQNTN 
Sbjct: 371  PKLTDDEMTTIRRLARPLPTHFALGRNRKLQGLATSIVKLWEKCEIAKVAVKRGVQNTNC 430

Query: 1420 VMMAEELKQLTGGTLLSRDREFFVFYRGKDFLPLVVSSAIEERRNK---GNNRPKRITNE 1590
             +MAEELK+LTGGTL++RD+EF V YRGKDFLP  VSSAIEERR      +NR +++   
Sbjct: 431  ELMAEELKRLTGGTLIARDKEFIVLYRGKDFLPPAVSSAIEERRKAVMYADNRSRKLR-- 488

Query: 1591 NLVEALVVXXXXXXXXXXXXXLKKGSEQKQKFALEGTNSENFALQIIENRLSQAIVKVEM 1770
              + A                   G    +K  L+ T +      I   +LS A+ K E 
Sbjct: 489  --ISATTAQDHESRTELETKDDLTGGLPSEKRKLKSTEAAASRASI---KLSMALEKREK 543

Query: 1771 SRKRLAELETSVKPKETELDKEAISEEERYMLRKVGLRMNAFLLLGRRGVFDGTVENMHL 1950
            + K LAELE +  P++ E+DKE I+EEERYMLRKVGL+M  FLL+GRRGVFDGT+ENMHL
Sbjct: 544  AEKLLAELEKAESPQQPEIDKEGITEEERYMLRKVGLKMKPFLLMGRRGVFDGTIENMHL 603

Query: 1951 HWKYRELVKIISKDHSIKXXXXXXXXXXXXSGGILVAVERVSKGYAIIIYRGKNYRRPVI 2130
            HWKYRELVKII  + SI+            SGGILVAVERVSKGYAII+YRGKNY RP  
Sbjct: 604  HWKYRELVKIICNEKSIESAHQVAQTLESESGGILVAVERVSKGYAIIVYRGKNYIRPAN 663

Query: 2131 LRPTTLPNKRVAMKRSLEAQRCESLKLHVLKFSKKISQVKD 2253
            LRP TL  KR A+KRS+EAQR ESLKLHVLK +K I ++++
Sbjct: 664  LRPQTLLTKREALKRSIEAQRRESLKLHVLKLNKNIDELEE 704


>ref|XP_006338519.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X2 [Solanum tuberosum]
          Length = 878

 Score =  701 bits (1808), Expect = 0.0
 Identities = 373/672 (55%), Positives = 467/672 (69%), Gaps = 12/672 (1%)
 Frame = +1

Query: 271  QSAIQRISEKLRSLGFLEQHPPSSADDRPTTG---PGSAGEIFIPTPGEILTHRVGYTID 441
            +SAI+RI++KLRSLGF+E+       +   +      S G+IF+P P ++  +RVG+T+D
Sbjct: 58   ESAIRRIADKLRSLGFVEEPKNQETQENALSSNPTANSPGQIFVPLPTQLPKYRVGHTLD 117

Query: 442  SSWSTPEHPVPQPGSGVTINRFHHLWTRDKVRKAEARARKDS-----EPPPTVAELTIPP 606
            +SWSTPE+PVPQPG G +I +FH L  RD+  K + + R  +     E  P++AELT+P 
Sbjct: 118  TSWSTPENPVPQPGLGNSIQKFHEL--RDEFLKEKEKERLKNKEYKKERAPSLAELTLPA 175

Query: 607  EELKRLRREGVRLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEI 786
            EEL+RLR  G+ L K+LKIGKAGITEGIVNGIHERWRR ELVKI CED+CR+NMKRTHE+
Sbjct: 176  EELRRLRTVGIALRKKLKIGKAGITEGIVNGIHERWRRMELVKITCEDICRLNMKRTHEL 235

Query: 787  LERKTGGLVVWRSGSIIILYRGVDYKYPCYFHE---DKDKIFNET-SLSSGMHNEPTNSQ 954
            LE+KTGGLV+WRSGS IILYRG DYKYP YF E   + +   + T  L  G     TNS 
Sbjct: 236  LEKKTGGLVIWRSGSNIILYRGADYKYP-YFSEISFENNSAQDATPDLFMGTEEHMTNSS 294

Query: 955  EASLLPMLXXXXXXXXXXXXXXXXFIVGVGSSKKAHQKIEGELQLEEEADRLLDGLGPRF 1134
               ++                    I GVGS  +   ++ GE +  EEAD+LL+GLGPRF
Sbjct: 295  GTDVVK-------PDASDRKSPPRVIQGVGSPDRVRFELPGEAEHTEEADKLLEGLGPRF 347

Query: 1135 SDWWGCAPLPIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFALG 1314
            +DWWGC PLPIDADLLPA+VPG+++PFRLLP+G+KPKLT+ EMT L+RLGRPLPCHF LG
Sbjct: 348  TDWWGCEPLPIDADLLPAIVPGYKRPFRLLPYGVKPKLTNDEMTTLRRLGRPLPCHFVLG 407

Query: 1315 RNTNLQGLAVSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEELKQLTGGTLLSRDREFFVF 1494
            RN  LQGLA +++KLWEKCEIAK+A+KRGVQNTNS +MAEELK LTGGTLLSRDREF VF
Sbjct: 408  RNRKLQGLAAAIVKLWEKCEIAKVAVKRGVQNTNSELMAEELKWLTGGTLLSRDREFIVF 467

Query: 1495 YRGKDFLPLVVSSAIEERRNKGNNRPKRITNENLVEALVVXXXXXXXXXXXXXLKKGSEQ 1674
            YRGKDFLP  VSSAIEERR +     KR    + V                    + + Q
Sbjct: 468  YRGKDFLPSAVSSAIEERRKQVFEEEKRNGFNSSVANAKERKQSTTGSVSDDGHARRNNQ 527

Query: 1675 KQKFALEGTNSENFALQIIENRLSQAIVKVEMSRKRLAELETSVKPKETELDKEAISEEE 1854
            K     +   S   A++   ++L+ A+ K   +   L ELE    P+++++DKE I+EEE
Sbjct: 528  KGVQEKKKLTSMEAAIKRTADKLTTALEKKAEAENLLLELEEDEVPQQSDMDKEGITEEE 587

Query: 1855 RYMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXXXXXXXXX 2034
            R+MLRK+GLRM  FLLLGRRGVFDGTVENMHLHWKYRELVK+I+   +I+          
Sbjct: 588  RFMLRKIGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKVITGRKTIEEVHQIARMLE 647

Query: 2035 XXSGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQRCESLKLH 2214
              SGGILVAVE V+KG+AII+YRGKNY RP  LRP TL +KR AMKRS+EAQR +SLKLH
Sbjct: 648  AESGGILVAVELVNKGHAIIVYRGKNYERPASLRPQTLLSKREAMKRSIEAQRRQSLKLH 707

Query: 2215 VLKFSKKISQVK 2250
            VLK ++ I  ++
Sbjct: 708  VLKLTQNIEALQ 719


>ref|XP_006338518.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X1 [Solanum tuberosum]
          Length = 1049

 Score =  701 bits (1808), Expect = 0.0
 Identities = 373/672 (55%), Positives = 467/672 (69%), Gaps = 12/672 (1%)
 Frame = +1

Query: 271  QSAIQRISEKLRSLGFLEQHPPSSADDRPTTG---PGSAGEIFIPTPGEILTHRVGYTID 441
            +SAI+RI++KLRSLGF+E+       +   +      S G+IF+P P ++  +RVG+T+D
Sbjct: 58   ESAIRRIADKLRSLGFVEEPKNQETQENALSSNPTANSPGQIFVPLPTQLPKYRVGHTLD 117

Query: 442  SSWSTPEHPVPQPGSGVTINRFHHLWTRDKVRKAEARARKDS-----EPPPTVAELTIPP 606
            +SWSTPE+PVPQPG G +I +FH L  RD+  K + + R  +     E  P++AELT+P 
Sbjct: 118  TSWSTPENPVPQPGLGNSIQKFHEL--RDEFLKEKEKERLKNKEYKKERAPSLAELTLPA 175

Query: 607  EELKRLRREGVRLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEI 786
            EEL+RLR  G+ L K+LKIGKAGITEGIVNGIHERWRR ELVKI CED+CR+NMKRTHE+
Sbjct: 176  EELRRLRTVGIALRKKLKIGKAGITEGIVNGIHERWRRMELVKITCEDICRLNMKRTHEL 235

Query: 787  LERKTGGLVVWRSGSIIILYRGVDYKYPCYFHE---DKDKIFNET-SLSSGMHNEPTNSQ 954
            LE+KTGGLV+WRSGS IILYRG DYKYP YF E   + +   + T  L  G     TNS 
Sbjct: 236  LEKKTGGLVIWRSGSNIILYRGADYKYP-YFSEISFENNSAQDATPDLFMGTEEHMTNSS 294

Query: 955  EASLLPMLXXXXXXXXXXXXXXXXFIVGVGSSKKAHQKIEGELQLEEEADRLLDGLGPRF 1134
               ++                    I GVGS  +   ++ GE +  EEAD+LL+GLGPRF
Sbjct: 295  GTDVVK-------PDASDRKSPPRVIQGVGSPDRVRFELPGEAEHTEEADKLLEGLGPRF 347

Query: 1135 SDWWGCAPLPIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFALG 1314
            +DWWGC PLPIDADLLPA+VPG+++PFRLLP+G+KPKLT+ EMT L+RLGRPLPCHF LG
Sbjct: 348  TDWWGCEPLPIDADLLPAIVPGYKRPFRLLPYGVKPKLTNDEMTTLRRLGRPLPCHFVLG 407

Query: 1315 RNTNLQGLAVSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEELKQLTGGTLLSRDREFFVF 1494
            RN  LQGLA +++KLWEKCEIAK+A+KRGVQNTNS +MAEELK LTGGTLLSRDREF VF
Sbjct: 408  RNRKLQGLAAAIVKLWEKCEIAKVAVKRGVQNTNSELMAEELKWLTGGTLLSRDREFIVF 467

Query: 1495 YRGKDFLPLVVSSAIEERRNKGNNRPKRITNENLVEALVVXXXXXXXXXXXXXLKKGSEQ 1674
            YRGKDFLP  VSSAIEERR +     KR    + V                    + + Q
Sbjct: 468  YRGKDFLPSAVSSAIEERRKQVFEEEKRNGFNSSVANAKERKQSTTGSVSDDGHARRNNQ 527

Query: 1675 KQKFALEGTNSENFALQIIENRLSQAIVKVEMSRKRLAELETSVKPKETELDKEAISEEE 1854
            K     +   S   A++   ++L+ A+ K   +   L ELE    P+++++DKE I+EEE
Sbjct: 528  KGVQEKKKLTSMEAAIKRTADKLTTALEKKAEAENLLLELEEDEVPQQSDMDKEGITEEE 587

Query: 1855 RYMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXXXXXXXXX 2034
            R+MLRK+GLRM  FLLLGRRGVFDGTVENMHLHWKYRELVK+I+   +I+          
Sbjct: 588  RFMLRKIGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKVITGRKTIEEVHQIARMLE 647

Query: 2035 XXSGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQRCESLKLH 2214
              SGGILVAVE V+KG+AII+YRGKNY RP  LRP TL +KR AMKRS+EAQR +SLKLH
Sbjct: 648  AESGGILVAVELVNKGHAIIVYRGKNYERPASLRPQTLLSKREAMKRSIEAQRRQSLKLH 707

Query: 2215 VLKFSKKISQVK 2250
            VLK ++ I  ++
Sbjct: 708  VLKLTQNIEALQ 719


>gb|EOY02282.1| CRM family member 2, putative isoform 2 [Theobroma cacao]
          Length = 1045

 Score =  700 bits (1806), Expect = 0.0
 Identities = 377/689 (54%), Positives = 470/689 (68%), Gaps = 17/689 (2%)
 Frame = +1

Query: 271  QSAIQRISEKLRSLGFLEQHPPSSADDRPTTGPGSAGEIFIPTPGEILTHRVGYTIDSSW 450
            QSAIQRI++KLRSLGF E   P   +  P +G  S GEIF+P P +I  +RVG+TID+SW
Sbjct: 59   QSAIQRIADKLRSLGFSETQNPEP-ESEPGSGSDSPGEIFVPLPEKIPKYRVGHTIDTSW 117

Query: 451  STPEHPVPQPGSGV--TINRFHHLWTRDKVRKAEARARKDSEPPPTVAELTIPPEELKRL 624
            STPE+PVP PGSG    + RF  +    + R+   R +++    P++AEL +   EL+RL
Sbjct: 118  STPENPVPDPGSGPGSLMARFREM---KRERRKVGRVKEEDRAVPSLAELKLSAAELRRL 174

Query: 625  RREGVRLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKTG 804
            R  G+  +++LK+GKAGITEGIVNGIHERWRRSE+VKI CED+C+MNMKRTHE+LERKTG
Sbjct: 175  RTVGIGEKRKLKLGKAGITEGIVNGIHERWRRSEVVKIVCEDICKMNMKRTHEVLERKTG 234

Query: 805  GLVVWRSGSIIILYRGVDYKYPCYFHEDK---DKIFNETSLSSGMHNEPTNSQEASLLPM 975
            GLVVWRSGS IILYRG +Y+YP YF  DK   D   +  S  + M N   +  E+    +
Sbjct: 235  GLVVWRSGSKIILYRGANYRYP-YFLADKIATDDTSSNASPDTNMDNVELHETESCSSEI 293

Query: 976  LXXXXXXXXXXXXXXXXFIV-GVGSSKKAHQKIEGELQLEEEADRLLDGLGPRFSDWWGC 1152
                              IV GVGS  +   ++ GE +L EEA+ LLDGLGPRF+DWWG 
Sbjct: 294  NSAKTAIPNATNKMTKPMIVQGVGSPSRVRFQLPGEAELVEEANHLLDGLGPRFTDWWGY 353

Query: 1153 APLPIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFALGRNTNLQ 1332
             PLP+D DLLPA++PG+R+PFRLLP+G+KP LT+ EMT L+RLGRPLPCHF LGRN  LQ
Sbjct: 354  EPLPVDGDLLPAIIPGYRRPFRLLPYGVKPILTNDEMTTLRRLGRPLPCHFVLGRNRKLQ 413

Query: 1333 GLAVSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEELKQLTGGTLLSRDREFFVFYRGKDF 1512
            GLA S++K WEKCEIAK+A+KRGVQNTNS +MAEELK LTGGTLLSRD++F V YRGKDF
Sbjct: 414  GLAASIVKHWEKCEIAKVAVKRGVQNTNSELMAEELKWLTGGTLLSRDKDFIVLYRGKDF 473

Query: 1513 LPLVVSSAIEERR---------NKGNNRPKRITNENLVEALVVXXXXXXXXXXXXXLKKG 1665
            LP  VSSAIEERR             ++ K+   E +VE                 +   
Sbjct: 474  LPSAVSSAIEERRRHVIHVEKQGAECSKSKKTAQEVIVE--------DTKSGSESKINSA 525

Query: 1666 SEQKQKFALEGTN--SENFALQIIENRLSQAIVKVEMSRKRLAELETSVKPKETELDKEA 1839
             +Q+  F  +  N  S   A++  + +LS A+ K   + K LAELE +  P+++E+DKE 
Sbjct: 526  KDQRSNFFGDPKNMKSAEAAIRKTDVKLSMALEKKAKAEKLLAELEQAEIPQQSEIDKEG 585

Query: 1840 ISEEERYMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXXXX 2019
            I++EERYMLRKVGLRM  FLLLGRRGVFDGTVENMHLHWKYRELVKIISK+ +++     
Sbjct: 586  ITQEERYMLRKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIISKETNVEAVHQL 645

Query: 2020 XXXXXXXSGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQRCE 2199
                   SGGILVAVERVSKGYAII+YRGKNY RP  LRP TL  KR AMKRSLE QR +
Sbjct: 646  ARMLEAESGGILVAVERVSKGYAIIVYRGKNYERPTSLRPQTLLTKRQAMKRSLEEQRRK 705

Query: 2200 SLKLHVLKFSKKISQVKDDSYVDSTVEHM 2286
            SLKLH+L  ++ ++ ++    VD     M
Sbjct: 706  SLKLHILNLTRNVNDLEHQLVVDKEANSM 734


>ref|XP_006849108.1| hypothetical protein AMTR_s00028p00245370 [Amborella trichopoda]
            gi|548852581|gb|ERN10689.1| hypothetical protein
            AMTR_s00028p00245370 [Amborella trichopoda]
          Length = 1042

 Score =  699 bits (1805), Expect = 0.0
 Identities = 389/693 (56%), Positives = 475/693 (68%), Gaps = 14/693 (2%)
 Frame = +1

Query: 166  PRFPSPR---CALPSQNPRKPLKGXXXXXXXXXXXXVSQSAIQRISEKLRSLGFLEQHPP 336
            P +PSP     +L   +PR P +             VS++AIQRI+EKL+SLG++E+   
Sbjct: 24   PLYPSPLKNPFSLTLTHPRNP-RYCATSASHCSNGTVSKTAIQRIAEKLKSLGYVEELND 82

Query: 337  SSADDRPTTGPGSAGEIFIPTPGEILTHRVGYTIDSSWSTPEHPVPQPGSGVTINRFHHL 516
            S       TGPGS GEIFIP    +   RVG T+D SWSTPE+PVP+PGSG  I+RFH L
Sbjct: 83   SEPQ---CTGPGSPGEIFIPRLENLAKIRVGSTLDKSWSTPENPVPEPGSGSAISRFHVL 139

Query: 517  WTRDKVRKAEARARKDSEPPPTVAELTIPPEELKRLRREGVRLEKRLKIGKAGITEGIVN 696
              R + +K   +  + S P  ++AEL IP  EL+RLR  G+ LEK+L +GK G+TEGIVN
Sbjct: 140  --RKEAKKNAVKGERGSAP--SLAELRIPEAELQRLRSIGICLEKKLIVGKPGVTEGIVN 195

Query: 697  GIHERWRRSELVKIKCEDLCRMNMKRTHEILERKTGGLVVWRSGSIIILYRGVDYKYPCY 876
            GIHERWRRSELVKIKC+DL  +NMKRTHEILE KTGG+V+ RSGSIIILYRG +Y YP Y
Sbjct: 196  GIHERWRRSELVKIKCQDLSMVNMKRTHEILETKTGGIVICRSGSIIILYRGANYTYP-Y 254

Query: 877  FHEDKDKIFNE-----TSLSSGMHNEPTNSQEASLLPMLXXXXXXXXXXXXXXXXFIVGV 1041
            F   +D   NE     +  SS ++   +N +  +                      ++GV
Sbjct: 255  FVAGEDLSENEDIHEVSFKSSVVYGSGSNEENKTNSLPRVGGISAVEATQITGRSIVLGV 314

Query: 1042 GSSKKAHQKIEGELQLEEEADRLLDGLGPRFSDWWGCAPLPIDADLLPAVVPGFRKPFRL 1221
            GS  K   ++ GE QL++EADRLLDGLGPRF+DWWG  PLP+DADLLPA V G+RKPFRL
Sbjct: 315  GSPNKVRFQLPGERQLDKEADRLLDGLGPRFTDWWGYGPLPVDADLLPATVSGYRKPFRL 374

Query: 1222 LPFGIKPKLTDREMTILKRLGRPLPCHFALGRNTNLQGLAVSMMKLWEKCEIAKIAIKRG 1401
            LP+G+KPKLTD EMT L+RLGRPLPCHFALGRN NLQGLA S+++LWEKCEIAKIA+KRG
Sbjct: 375  LPYGVKPKLTDSEMTTLRRLGRPLPCHFALGRNRNLQGLATSIVRLWEKCEIAKIAVKRG 434

Query: 1402 VQNTNSVMMAEELKQLTGGTLLSRDREFFVFYRGKDFLPLVVSSAIEERRNKGNNRPKRI 1581
            VQNTNS +MAEELK+LTGGTLLSRDREF VFYRGKDFLP  VSSAIEERR     R +  
Sbjct: 435  VQNTNSELMAEELKRLTGGTLLSRDREFIVFYRGKDFLPPAVSSAIEERRTVDVLRKQLK 494

Query: 1582 TNENL---VEALV---VXXXXXXXXXXXXXLKKGSEQKQKFALEGTNSENFALQIIENRL 1743
             N NL    +A +   V             L    E+K           N A++ ++ +L
Sbjct: 495  GNRNLDLSSQASLGYDVRLVKTTSDAELQDLNNQDEEKLSKDQLKPMKVNVAMKRLDWKL 554

Query: 1744 SQAIVKVEMSRKRLAELETSVKPKETELDKEAISEEERYMLRKVGLRMNAFLLLGRRGVF 1923
            S+A+ K +M+ ++LAELE+  +  + ++DKE I+EEERYMLRKVGLRM AFLLLGRRGVF
Sbjct: 555  SEALEKKQMAERKLAELESKAELSKPDIDKEGITEEERYMLRKVGLRMKAFLLLGRRGVF 614

Query: 1924 DGTVENMHLHWKYRELVKIISKDHSIKXXXXXXXXXXXXSGGILVAVERVSKGYAIIIYR 2103
            DGT+ENMHLHWKYREL+KIISKD SI             SGGILV+VE V+KG+AII+YR
Sbjct: 615  DGTIENMHLHWKYRELIKIISKDRSIAEVHHAARTLEAESGGILVSVETVNKGHAIIVYR 674

Query: 2104 GKNYRRPVILRPTTLPNKRVAMKRSLEAQRCES 2202
            GKNY+RP  LRP  L NKR AMK SLEAQR E+
Sbjct: 675  GKNYQRPDNLRPQNLLNKREAMKHSLEAQRREA 707


>ref|XP_006431007.1| hypothetical protein CICLE_v10013715mg [Citrus clementina]
            gi|557533064|gb|ESR44247.1| hypothetical protein
            CICLE_v10013715mg [Citrus clementina]
          Length = 1062

 Score =  698 bits (1801), Expect = 0.0
 Identities = 386/678 (56%), Positives = 463/678 (68%), Gaps = 19/678 (2%)
 Frame = +1

Query: 274  SAIQRISEKLRSLGFLEQHPPSSADDR-----PTTGPGSAGEIFIPTPGEILTHRVGYTI 438
            SAIQRI++KLRSLG +EQ   +S DD       T    +AGEIFIP P  I  +RVG+TI
Sbjct: 66   SAIQRIADKLRSLGIVEQ--TTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTI 123

Query: 439  DSSWSTPEHPVPQPGSGVTINRFHHLWT---RDKVRKAEARARKDSEPPPTVAELTIPPE 609
            D SWSTPE+PVP PG+G  I R++ L     R K     ++  +  +  PT+AEL +  +
Sbjct: 124  DDSWSTPENPVPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGK 183

Query: 610  ELKRLRREGVRLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEIL 789
            EL+RLR  G+ L K+LKIGKAGITEGIVNGIHERWR +E+VKI CEDLCR+NMKRTH+ L
Sbjct: 184  ELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSL 243

Query: 790  ERKTGGLVVWRSGSIIILYRGVDYKYPCYFHEDK-------DKIFNETSLSSGMHNEPTN 948
            ERKTGGLVVWRSGS IILYRG DYKYP +  ++        D + N+     G+    T+
Sbjct: 244  ERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTH 303

Query: 949  SQEASLLPMLXXXXXXXXXXXXXXXXFIVGVGSSKKAHQKIEGELQLEEEADRLLDGLGP 1128
            S  A                       I  VGS  K   ++ GE +L EEADRLLDGLGP
Sbjct: 304  SSGADSAK----PSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGP 359

Query: 1129 RFSDWWGCAPLPIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFA 1308
            RF+DWWG  P P+DADLLPA VPG+R+PFRLLP+G++PKLT+ EMT L+RLGRPLPCHFA
Sbjct: 360  RFTDWWGYDPQPVDADLLPATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFA 419

Query: 1309 LGRNTNLQGLAVSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEELKQLTGGTLLSRDREFF 1488
            LGRN NLQGLA +++KLWEKCEIAKIA+KRG QNTNS MMA+ELK+LTGGTLLSRDREF 
Sbjct: 420  LGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFI 479

Query: 1489 VFYRGKDFLPLVVSSAIEERR----NKGNNRPKRITNENLVEALVVXXXXXXXXXXXXXL 1656
            VFYRGKDFLP   SSAIEERR    +  N+  +     N  +                  
Sbjct: 480  VFYRGKDFLPPAASSAIEERRKHEFSTSNDSKEEPELGNRHDNSGDNTQDEFGCTNDQTS 539

Query: 1657 KKGSEQKQKFALEGTNSENFALQIIENRLSQAIVKVEMSRKRLAELETSVKPKETELDKE 1836
               SEQK++       S   A++    RLS+A+ K   + K LAELE   +P++ E+DKE
Sbjct: 540  TMHSEQKER------RSAEVAIRRTSIRLSRALEKKAEAEKLLAELEEE-RPEQYEVDKE 592

Query: 1837 AISEEERYMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXXX 2016
             I+EEERYMLRKVGLRM AFLL+GRRGVFDGTVENMHLHWK+RELVKIISK   I+    
Sbjct: 593  GITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQ 652

Query: 2017 XXXXXXXXSGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQRC 2196
                    SGGILVAVERV+KGYAII+YRGKNY RP  LRP TL  KR AMKRSLEAQR 
Sbjct: 653  EARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRR 712

Query: 2197 ESLKLHVLKFSKKISQVK 2250
            +SLKLHVL+ ++ I ++K
Sbjct: 713  QSLKLHVLELTRNIEKLK 730


>ref|XP_006482481.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X6 [Citrus sinensis]
          Length = 1031

 Score =  692 bits (1785), Expect = 0.0
 Identities = 383/678 (56%), Positives = 460/678 (67%), Gaps = 19/678 (2%)
 Frame = +1

Query: 274  SAIQRISEKLRSLGFLEQHPPSSADDR-----PTTGPGSAGEIFIPTPGEILTHRVGYTI 438
            SAIQRI++KLRSLG +EQ   +S DD       T    +AGEIFIP P  I  +RVG+TI
Sbjct: 66   SAIQRIADKLRSLGIVEQ--TTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTI 123

Query: 439  DSSWSTPEHPVPQPGSGVTINRFHHLWT---RDKVRKAEARARKDSEPPPTVAELTIPPE 609
            D SWSTPE+P+P PG+G  I R++ L     R K     ++  +  +  PT+AEL +  +
Sbjct: 124  DDSWSTPENPIPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGK 183

Query: 610  ELKRLRREGVRLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEIL 789
            EL+RLR  G+ L K+LKIGKAGITEGIVNGIHERWR +E+VKI CEDLCR+NMKRTH+ L
Sbjct: 184  ELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSL 243

Query: 790  ERKTGGLVVWRSGSIIILYRGVDYKYPCYFHEDK-------DKIFNETSLSSGMHNEPTN 948
            ERKTGGLVVWRSGS IILYRG DYKYP +  ++        D + N+     G+    T+
Sbjct: 244  ERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTH 303

Query: 949  SQEASLLPMLXXXXXXXXXXXXXXXXFIVGVGSSKKAHQKIEGELQLEEEADRLLDGLGP 1128
            S  A                       I  VGS  K   ++ GE +L EEADRLLDGLGP
Sbjct: 304  SSGADSAK----PSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGP 359

Query: 1129 RFSDWWGCAPLPIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFA 1308
            RF+DWWG  P P+DADLL A VPG+R+PFRLLP+G++PKLT+ EMT L+RLGRPLPCHFA
Sbjct: 360  RFTDWWGYDPQPVDADLLSATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFA 419

Query: 1309 LGRNTNLQGLAVSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEELKQLTGGTLLSRDREFF 1488
            LGRN NLQGLA +++KLWEKCEIAKIA+KRG QNTNS MMA+ELK+LTGGTLLSRDREF 
Sbjct: 420  LGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFI 479

Query: 1489 VFYRGKDFLPLVVSSAIEERR----NKGNNRPKRITNENLVEALVVXXXXXXXXXXXXXL 1656
            VFYRGKDFLP   S AIEERR    +  N+  +     N  +                  
Sbjct: 480  VFYRGKDFLPPAASCAIEERRKHEFSTSNDSKEEPELGNRHDNSGDNTQDEFGCTNDQKS 539

Query: 1657 KKGSEQKQKFALEGTNSENFALQIIENRLSQAIVKVEMSRKRLAELETSVKPKETELDKE 1836
               SEQK++       S   A++    RLS+A+ K   + K LAELE    P++ E+DKE
Sbjct: 540  TMHSEQKER------RSAEVAIRRTNIRLSRALEKKAEAEKLLAELEEET-PEQYEVDKE 592

Query: 1837 AISEEERYMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXXX 2016
             I+EEERYMLRKVGLRM AFLL+GRRGVFDGTVENMHLHWK+RELVKIISK   I+    
Sbjct: 593  GITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQ 652

Query: 2017 XXXXXXXXSGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQRC 2196
                    SGGILVAVERV+KGYAII+YRGKNY RP  LRP TL  KR AMKRSLEAQR 
Sbjct: 653  EARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRR 712

Query: 2197 ESLKLHVLKFSKKISQVK 2250
            +SLKLHVL+ ++ I ++K
Sbjct: 713  QSLKLHVLELTRNIEKLK 730


>ref|XP_006482480.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X5 [Citrus sinensis]
          Length = 1045

 Score =  692 bits (1785), Expect = 0.0
 Identities = 383/678 (56%), Positives = 460/678 (67%), Gaps = 19/678 (2%)
 Frame = +1

Query: 274  SAIQRISEKLRSLGFLEQHPPSSADDR-----PTTGPGSAGEIFIPTPGEILTHRVGYTI 438
            SAIQRI++KLRSLG +EQ   +S DD       T    +AGEIFIP P  I  +RVG+TI
Sbjct: 66   SAIQRIADKLRSLGIVEQ--TTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTI 123

Query: 439  DSSWSTPEHPVPQPGSGVTINRFHHLWT---RDKVRKAEARARKDSEPPPTVAELTIPPE 609
            D SWSTPE+P+P PG+G  I R++ L     R K     ++  +  +  PT+AEL +  +
Sbjct: 124  DDSWSTPENPIPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGK 183

Query: 610  ELKRLRREGVRLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEIL 789
            EL+RLR  G+ L K+LKIGKAGITEGIVNGIHERWR +E+VKI CEDLCR+NMKRTH+ L
Sbjct: 184  ELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSL 243

Query: 790  ERKTGGLVVWRSGSIIILYRGVDYKYPCYFHEDK-------DKIFNETSLSSGMHNEPTN 948
            ERKTGGLVVWRSGS IILYRG DYKYP +  ++        D + N+     G+    T+
Sbjct: 244  ERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTH 303

Query: 949  SQEASLLPMLXXXXXXXXXXXXXXXXFIVGVGSSKKAHQKIEGELQLEEEADRLLDGLGP 1128
            S  A                       I  VGS  K   ++ GE +L EEADRLLDGLGP
Sbjct: 304  SSGADSAK----PSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGP 359

Query: 1129 RFSDWWGCAPLPIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFA 1308
            RF+DWWG  P P+DADLL A VPG+R+PFRLLP+G++PKLT+ EMT L+RLGRPLPCHFA
Sbjct: 360  RFTDWWGYDPQPVDADLLSATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFA 419

Query: 1309 LGRNTNLQGLAVSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEELKQLTGGTLLSRDREFF 1488
            LGRN NLQGLA +++KLWEKCEIAKIA+KRG QNTNS MMA+ELK+LTGGTLLSRDREF 
Sbjct: 420  LGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFI 479

Query: 1489 VFYRGKDFLPLVVSSAIEERR----NKGNNRPKRITNENLVEALVVXXXXXXXXXXXXXL 1656
            VFYRGKDFLP   S AIEERR    +  N+  +     N  +                  
Sbjct: 480  VFYRGKDFLPPAASCAIEERRKHEFSTSNDSKEEPELGNRHDNSGDNTQDEFGCTNDQKS 539

Query: 1657 KKGSEQKQKFALEGTNSENFALQIIENRLSQAIVKVEMSRKRLAELETSVKPKETELDKE 1836
               SEQK++       S   A++    RLS+A+ K   + K LAELE    P++ E+DKE
Sbjct: 540  TMHSEQKER------RSAEVAIRRTNIRLSRALEKKAEAEKLLAELEEET-PEQYEVDKE 592

Query: 1837 AISEEERYMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXXX 2016
             I+EEERYMLRKVGLRM AFLL+GRRGVFDGTVENMHLHWK+RELVKIISK   I+    
Sbjct: 593  GITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQ 652

Query: 2017 XXXXXXXXSGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQRC 2196
                    SGGILVAVERV+KGYAII+YRGKNY RP  LRP TL  KR AMKRSLEAQR 
Sbjct: 653  EARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRR 712

Query: 2197 ESLKLHVLKFSKKISQVK 2250
            +SLKLHVL+ ++ I ++K
Sbjct: 713  QSLKLHVLELTRNIEKLK 730


>ref|XP_006482479.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X4 [Citrus sinensis]
          Length = 1050

 Score =  692 bits (1785), Expect = 0.0
 Identities = 383/678 (56%), Positives = 460/678 (67%), Gaps = 19/678 (2%)
 Frame = +1

Query: 274  SAIQRISEKLRSLGFLEQHPPSSADDR-----PTTGPGSAGEIFIPTPGEILTHRVGYTI 438
            SAIQRI++KLRSLG +EQ   +S DD       T    +AGEIFIP P  I  +RVG+TI
Sbjct: 66   SAIQRIADKLRSLGIVEQ--TTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTI 123

Query: 439  DSSWSTPEHPVPQPGSGVTINRFHHLWT---RDKVRKAEARARKDSEPPPTVAELTIPPE 609
            D SWSTPE+P+P PG+G  I R++ L     R K     ++  +  +  PT+AEL +  +
Sbjct: 124  DDSWSTPENPIPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGK 183

Query: 610  ELKRLRREGVRLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEIL 789
            EL+RLR  G+ L K+LKIGKAGITEGIVNGIHERWR +E+VKI CEDLCR+NMKRTH+ L
Sbjct: 184  ELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSL 243

Query: 790  ERKTGGLVVWRSGSIIILYRGVDYKYPCYFHEDK-------DKIFNETSLSSGMHNEPTN 948
            ERKTGGLVVWRSGS IILYRG DYKYP +  ++        D + N+     G+    T+
Sbjct: 244  ERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTH 303

Query: 949  SQEASLLPMLXXXXXXXXXXXXXXXXFIVGVGSSKKAHQKIEGELQLEEEADRLLDGLGP 1128
            S  A                       I  VGS  K   ++ GE +L EEADRLLDGLGP
Sbjct: 304  SSGADSAK----PSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGP 359

Query: 1129 RFSDWWGCAPLPIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFA 1308
            RF+DWWG  P P+DADLL A VPG+R+PFRLLP+G++PKLT+ EMT L+RLGRPLPCHFA
Sbjct: 360  RFTDWWGYDPQPVDADLLSATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFA 419

Query: 1309 LGRNTNLQGLAVSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEELKQLTGGTLLSRDREFF 1488
            LGRN NLQGLA +++KLWEKCEIAKIA+KRG QNTNS MMA+ELK+LTGGTLLSRDREF 
Sbjct: 420  LGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFI 479

Query: 1489 VFYRGKDFLPLVVSSAIEERR----NKGNNRPKRITNENLVEALVVXXXXXXXXXXXXXL 1656
            VFYRGKDFLP   S AIEERR    +  N+  +     N  +                  
Sbjct: 480  VFYRGKDFLPPAASCAIEERRKHEFSTSNDSKEEPELGNRHDNSGDNTQDEFGCTNDQKS 539

Query: 1657 KKGSEQKQKFALEGTNSENFALQIIENRLSQAIVKVEMSRKRLAELETSVKPKETELDKE 1836
               SEQK++       S   A++    RLS+A+ K   + K LAELE    P++ E+DKE
Sbjct: 540  TMHSEQKER------RSAEVAIRRTNIRLSRALEKKAEAEKLLAELEEET-PEQYEVDKE 592

Query: 1837 AISEEERYMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXXX 2016
             I+EEERYMLRKVGLRM AFLL+GRRGVFDGTVENMHLHWK+RELVKIISK   I+    
Sbjct: 593  GITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQ 652

Query: 2017 XXXXXXXXSGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQRC 2196
                    SGGILVAVERV+KGYAII+YRGKNY RP  LRP TL  KR AMKRSLEAQR 
Sbjct: 653  EARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRR 712

Query: 2197 ESLKLHVLKFSKKISQVK 2250
            +SLKLHVL+ ++ I ++K
Sbjct: 713  QSLKLHVLELTRNIEKLK 730


>ref|XP_006482478.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X3 [Citrus sinensis]
          Length = 1062

 Score =  692 bits (1785), Expect = 0.0
 Identities = 383/678 (56%), Positives = 460/678 (67%), Gaps = 19/678 (2%)
 Frame = +1

Query: 274  SAIQRISEKLRSLGFLEQHPPSSADDR-----PTTGPGSAGEIFIPTPGEILTHRVGYTI 438
            SAIQRI++KLRSLG +EQ   +S DD       T    +AGEIFIP P  I  +RVG+TI
Sbjct: 66   SAIQRIADKLRSLGIVEQ--TTSKDDTLNPEPETRATDNAGEIFIPLPHRIPKYRVGHTI 123

Query: 439  DSSWSTPEHPVPQPGSGVTINRFHHLWT---RDKVRKAEARARKDSEPPPTVAELTIPPE 609
            D SWSTPE+P+P PG+G  I R++ L     R K     ++  +  +  PT+AEL +  +
Sbjct: 124  DDSWSTPENPIPVPGTGAAIVRYNQLNKEVGRQKWLAKNSKMNEKEKEVPTLAELKLSGK 183

Query: 610  ELKRLRREGVRLEKRLKIGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEIL 789
            EL+RLR  G+ L K+LKIGKAGITEGIVNGIHERWR +E+VKI CEDLCR+NMKRTH+ L
Sbjct: 184  ELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSL 243

Query: 790  ERKTGGLVVWRSGSIIILYRGVDYKYPCYFHEDK-------DKIFNETSLSSGMHNEPTN 948
            ERKTGGLVVWRSGS IILYRG DYKYP +  ++        D + N+     G+    T+
Sbjct: 244  ERKTGGLVVWRSGSKIILYRGADYKYPYFLADESSTDGASSDDLPNQLVDDEGLDETKTH 303

Query: 949  SQEASLLPMLXXXXXXXXXXXXXXXXFIVGVGSSKKAHQKIEGELQLEEEADRLLDGLGP 1128
            S  A                       I  VGS  K   ++ GE +L EEADRLLDGLGP
Sbjct: 304  SSGADSAK----PSGQSPTNKKVQQTLIHSVGSPDKLRYQLPGEAELVEEADRLLDGLGP 359

Query: 1129 RFSDWWGCAPLPIDADLLPAVVPGFRKPFRLLPFGIKPKLTDREMTILKRLGRPLPCHFA 1308
            RF+DWWG  P P+DADLL A VPG+R+PFRLLP+G++PKLT+ EMT L+RLGRPLPCHFA
Sbjct: 360  RFTDWWGYDPQPVDADLLSATVPGYRRPFRLLPYGVQPKLTNDEMTTLRRLGRPLPCHFA 419

Query: 1309 LGRNTNLQGLAVSMMKLWEKCEIAKIAIKRGVQNTNSVMMAEELKQLTGGTLLSRDREFF 1488
            LGRN NLQGLA +++KLWEKCEIAKIA+KRG QNTNS MMA+ELK+LTGGTLLSRDREF 
Sbjct: 420  LGRNRNLQGLAAAIVKLWEKCEIAKIAVKRGAQNTNSEMMAQELKRLTGGTLLSRDREFI 479

Query: 1489 VFYRGKDFLPLVVSSAIEERR----NKGNNRPKRITNENLVEALVVXXXXXXXXXXXXXL 1656
            VFYRGKDFLP   S AIEERR    +  N+  +     N  +                  
Sbjct: 480  VFYRGKDFLPPAASCAIEERRKHEFSTSNDSKEEPELGNRHDNSGDNTQDEFGCTNDQKS 539

Query: 1657 KKGSEQKQKFALEGTNSENFALQIIENRLSQAIVKVEMSRKRLAELETSVKPKETELDKE 1836
               SEQK++       S   A++    RLS+A+ K   + K LAELE    P++ E+DKE
Sbjct: 540  TMHSEQKER------RSAEVAIRRTNIRLSRALEKKAEAEKLLAELEEET-PEQYEVDKE 592

Query: 1837 AISEEERYMLRKVGLRMNAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDHSIKXXXX 2016
             I+EEERYMLRKVGLRM AFLL+GRRGVFDGTVENMHLHWK+RELVKIISK   I+    
Sbjct: 593  GITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQ 652

Query: 2017 XXXXXXXXSGGILVAVERVSKGYAIIIYRGKNYRRPVILRPTTLPNKRVAMKRSLEAQRC 2196
                    SGGILVAVERV+KGYAII+YRGKNY RP  LRP TL  KR AMKRSLEAQR 
Sbjct: 653  EARTLEVESGGILVAVERVNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRR 712

Query: 2197 ESLKLHVLKFSKKISQVK 2250
            +SLKLHVL+ ++ I ++K
Sbjct: 713  QSLKLHVLELTRNIEKLK 730