BLASTX nr result
ID: Zingiber23_contig00004621
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber23_contig00004621
(518 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006653850.1| PREDICTED: zinc finger CCCH domain-containin... 78 1e-12
ref|XP_003580756.1| PREDICTED: zinc finger CCCH domain-containin... 73 3e-11
dbj|BAK01055.1| predicted protein [Hordeum vulgare subsp. vulgare] 73 3e-11
gb|EMT31378.1| Zinc finger CCCH domain-containing protein 30 [Ae... 73 5e-11
gb|EMS45250.1| Zinc finger CCCH domain-containing protein 30 [Tr... 73 5e-11
ref|XP_002510504.1| nucleic acid binding protein, putative [Rici... 72 1e-10
gb|EEE61849.1| hypothetical protein OsJ_16516 [Oryza sativa Japo... 72 1e-10
gb|EEC78190.1| hypothetical protein OsI_17796 [Oryza sativa Indi... 72 1e-10
sp|Q7XM16.3|C3H30_ORYSJ RecName: Full=Zinc finger CCCH domain-co... 72 1e-10
emb|CAH66888.1| OSIGBa0099L20.3 [Oryza sativa Indica Group] 72 1e-10
ref|NP_001054162.1| Os04g0663200 [Oryza sativa Japonica Group] g... 72 1e-10
emb|CAE04843.2| OSJNBa0084K01.15 [Oryza sativa Japonica Group] 72 1e-10
gb|ACN25297.1| unknown [Zea mays] gi|413919841|gb|AFW59773.1| zi... 68 1e-09
ref|XP_004960188.1| PREDICTED: zinc finger CCCH domain-containin... 68 1e-09
gb|AAO14624.2|AF467900_1 hypothetical protein [Prunus persica] g... 68 1e-09
ref|XP_002448705.1| hypothetical protein SORBIDRAFT_06g031850 [S... 67 2e-09
ref|XP_004291394.1| PREDICTED: zinc finger CCCH domain-containin... 66 4e-09
ref|XP_002306911.2| hypothetical protein POPTR_0005s25760g [Popu... 66 6e-09
ref|XP_003523552.1| PREDICTED: zinc finger CCCH domain-containin... 66 6e-09
ref|XP_002277913.1| PREDICTED: zinc finger CCCH domain-containin... 66 6e-09
>ref|XP_006653850.1| PREDICTED: zinc finger CCCH domain-containing protein 30-like
[Oryza brachyantha]
Length = 555
Score = 77.8 bits (190), Expect = 1e-12
Identities = 39/71 (54%), Positives = 51/71 (71%), Gaps = 2/71 (2%)
Frame = -2
Query: 508 GNVDLVNGSSH-QREARPKIPRPCAFFNTPKGCRHGANCSYQHDPSLPPR-TQQPRGSKR 335
G VD +NG+S R+A+ + +PCA+FN PKGCR+GANC++ HD S P R Q+ +GSKR
Sbjct: 485 GGVDGINGASMVSRDAKVRPMKPCAYFNGPKGCRNGANCTFLHDASAPTRKDQKQKGSKR 544
Query: 334 IKLDGGIVYRN 302
IKLD I RN
Sbjct: 545 IKLDNAIGGRN 555
>ref|XP_003580756.1| PREDICTED: zinc finger CCCH domain-containing protein 30-like
[Brachypodium distachyon]
Length = 454
Score = 73.2 bits (178), Expect = 3e-11
Identities = 34/65 (52%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Frame = -2
Query: 493 VNGSSH-QREARPKIPRPCAFFNTPKGCRHGANCSYQHDPSLPPRTQQPRGSKRIKLDGG 317
+NG+S R+ + + + CA+FN P+GCR+GANC++ HD S R +Q +GSKRIKLD G
Sbjct: 390 MNGASMVSRDTKSRPMKLCAYFNGPRGCRNGANCAFLHDASATSRQEQQKGSKRIKLDNG 449
Query: 316 IVYRN 302
IV RN
Sbjct: 450 IVGRN 454
>dbj|BAK01055.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 528
Score = 73.2 bits (178), Expect = 3e-11
Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Frame = -2
Query: 502 VDLVNGSS-HQREARPKIPRPCAFFNTPKGCRHGANCSYQHDPSLPPRTQQPRGSKRIKL 326
+D +NG+S R+ + + RPCA+FN P+GCR+GANC++ HD S PP QQ SKR+KL
Sbjct: 462 IDAMNGASVTNRDMKTRPTRPCAYFNGPRGCRNGANCTFLHDSS-PPSRQQENDSKRLKL 520
Query: 325 DGGIVYRN 302
D I RN
Sbjct: 521 DSRIAGRN 528
>gb|EMT31378.1| Zinc finger CCCH domain-containing protein 30 [Aegilops tauschii]
Length = 671
Score = 72.8 bits (177), Expect = 5e-11
Identities = 36/69 (52%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Frame = -2
Query: 502 VDLVNGSSH-QREARPKIPRPCAFFNTPKGCRHGANCSYQHDPSLPPRTQ-QPRGSKRIK 329
+D +NG+S R+ + + RPCA+FN P+GCR+GANC++ HD S R Q Q GSKRIK
Sbjct: 603 IDAMNGASMVNRDTKTRPTRPCAYFNGPRGCRNGANCTFLHDSSATSRQQEQQNGSKRIK 662
Query: 328 LDGGIVYRN 302
LD I RN
Sbjct: 663 LDSRITGRN 671
>gb|EMS45250.1| Zinc finger CCCH domain-containing protein 30 [Triticum urartu]
Length = 555
Score = 72.8 bits (177), Expect = 5e-11
Identities = 36/69 (52%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Frame = -2
Query: 502 VDLVNGSSH-QREARPKIPRPCAFFNTPKGCRHGANCSYQHDPSLPPRTQ-QPRGSKRIK 329
+D +NG+S R+ + + RPCA+FN P+GCR+GANC++ HD S R Q Q GSKRIK
Sbjct: 487 IDAMNGASMVNRDTKTRPTRPCAYFNGPRGCRNGANCTFLHDSSATSRQQEQQNGSKRIK 546
Query: 328 LDGGIVYRN 302
LD I RN
Sbjct: 547 LDSRITGRN 555
>ref|XP_002510504.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223551205|gb|EEF52691.1| nucleic acid binding
protein, putative [Ricinus communis]
Length = 461
Score = 71.6 bits (174), Expect = 1e-10
Identities = 33/64 (51%), Positives = 46/64 (71%), Gaps = 3/64 (4%)
Frame = -2
Query: 505 NVDLVNGSSHQREARPKIPRPCAFFNTPKGCRHGANCSYQHDPSLPPRT---QQPRGSKR 335
N +LVN S RE +PKI +PC +FN+ +GCRHGANC+YQHDPS R+ + + +KR
Sbjct: 395 NQELVNPKS--RELKPKIMKPCIYFNSSRGCRHGANCAYQHDPSFQQRSSAISEVQSAKR 452
Query: 334 IKLD 323
+K+D
Sbjct: 453 MKVD 456
>gb|EEE61849.1| hypothetical protein OsJ_16516 [Oryza sativa Japonica Group]
Length = 473
Score = 71.6 bits (174), Expect = 1e-10
Identities = 34/73 (46%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Frame = -2
Query: 508 GNVDLVNGSSHQ--REARPKIPRPCAFFNTPKGCRHGANCSYQHDPSLPPRT--QQPRGS 341
G +D +NG++ R+ + + +PCA+FN+PKGCR+GA+C++ HD S P R Q+ +GS
Sbjct: 401 GGIDAMNGAAAMVSRDGKVRPMKPCAYFNSPKGCRNGASCTFLHDASAPTRKDHQKQKGS 460
Query: 340 KRIKLDGGIVYRN 302
KRIKLD + RN
Sbjct: 461 KRIKLDNTMGGRN 473
>gb|EEC78190.1| hypothetical protein OsI_17796 [Oryza sativa Indica Group]
Length = 473
Score = 71.6 bits (174), Expect = 1e-10
Identities = 34/73 (46%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Frame = -2
Query: 508 GNVDLVNGSSHQ--REARPKIPRPCAFFNTPKGCRHGANCSYQHDPSLPPRT--QQPRGS 341
G +D +NG++ R+ + + +PCA+FN+PKGCR+GA+C++ HD S P R Q+ +GS
Sbjct: 401 GGIDAMNGAAAMVSRDGKVRPMKPCAYFNSPKGCRNGASCTFLHDASAPTRKDHQKQKGS 460
Query: 340 KRIKLDGGIVYRN 302
KRIKLD + RN
Sbjct: 461 KRIKLDNTMGGRN 473
>sp|Q7XM16.3|C3H30_ORYSJ RecName: Full=Zinc finger CCCH domain-containing protein 30;
Short=OsC3H30
Length = 469
Score = 71.6 bits (174), Expect = 1e-10
Identities = 34/73 (46%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Frame = -2
Query: 508 GNVDLVNGSSHQ--REARPKIPRPCAFFNTPKGCRHGANCSYQHDPSLPPRT--QQPRGS 341
G +D +NG++ R+ + + +PCA+FN+PKGCR+GA+C++ HD S P R Q+ +GS
Sbjct: 397 GGIDAMNGAAAMVSRDGKVRPMKPCAYFNSPKGCRNGASCTFLHDASAPTRKDHQKQKGS 456
Query: 340 KRIKLDGGIVYRN 302
KRIKLD + RN
Sbjct: 457 KRIKLDNTMGGRN 469
>emb|CAH66888.1| OSIGBa0099L20.3 [Oryza sativa Indica Group]
Length = 451
Score = 71.6 bits (174), Expect = 1e-10
Identities = 34/73 (46%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Frame = -2
Query: 508 GNVDLVNGSSHQ--REARPKIPRPCAFFNTPKGCRHGANCSYQHDPSLPPRT--QQPRGS 341
G +D +NG++ R+ + + +PCA+FN+PKGCR+GA+C++ HD S P R Q+ +GS
Sbjct: 379 GGIDAMNGAAAMVSRDGKVRPMKPCAYFNSPKGCRNGASCTFLHDASAPTRKDHQKQKGS 438
Query: 340 KRIKLDGGIVYRN 302
KRIKLD + RN
Sbjct: 439 KRIKLDNTMGGRN 451
>ref|NP_001054162.1| Os04g0663200 [Oryza sativa Japonica Group]
gi|113565733|dbj|BAF16076.1| Os04g0663200 [Oryza sativa
Japonica Group]
Length = 393
Score = 71.6 bits (174), Expect = 1e-10
Identities = 34/73 (46%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Frame = -2
Query: 508 GNVDLVNGSSHQ--REARPKIPRPCAFFNTPKGCRHGANCSYQHDPSLPPRT--QQPRGS 341
G +D +NG++ R+ + + +PCA+FN+PKGCR+GA+C++ HD S P R Q+ +GS
Sbjct: 321 GGIDAMNGAAAMVSRDGKVRPMKPCAYFNSPKGCRNGASCTFLHDASAPTRKDHQKQKGS 380
Query: 340 KRIKLDGGIVYRN 302
KRIKLD + RN
Sbjct: 381 KRIKLDNTMGGRN 393
>emb|CAE04843.2| OSJNBa0084K01.15 [Oryza sativa Japonica Group]
Length = 451
Score = 71.6 bits (174), Expect = 1e-10
Identities = 34/73 (46%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Frame = -2
Query: 508 GNVDLVNGSSHQ--REARPKIPRPCAFFNTPKGCRHGANCSYQHDPSLPPRT--QQPRGS 341
G +D +NG++ R+ + + +PCA+FN+PKGCR+GA+C++ HD S P R Q+ +GS
Sbjct: 379 GGIDAMNGAAAMVSRDGKVRPMKPCAYFNSPKGCRNGASCTFLHDASAPTRKDHQKQKGS 438
Query: 340 KRIKLDGGIVYRN 302
KRIKLD + RN
Sbjct: 439 KRIKLDNTMGGRN 451
>gb|ACN25297.1| unknown [Zea mays] gi|413919841|gb|AFW59773.1| zinc finger
C-x8-C-x5-C-x3-H type family protein [Zea mays]
Length = 458
Score = 68.2 bits (165), Expect = 1e-09
Identities = 31/62 (50%), Positives = 44/62 (70%)
Frame = -2
Query: 490 NGSSHQREARPKIPRPCAFFNTPKGCRHGANCSYQHDPSLPPRTQQPRGSKRIKLDGGIV 311
+G+ R+ + + RPCA+FN+ +GCR+GANC++ HD S R +QP+GSKRIKLD I
Sbjct: 397 SGTMPARDTKQRPTRPCAYFNSARGCRNGANCTFLHDVS-AARKEQPKGSKRIKLDSRIA 455
Query: 310 YR 305
R
Sbjct: 456 GR 457
>ref|XP_004960188.1| PREDICTED: zinc finger CCCH domain-containing protein 30-like
isoform X1 [Setaria italica]
Length = 450
Score = 67.8 bits (164), Expect = 1e-09
Identities = 31/66 (46%), Positives = 45/66 (68%)
Frame = -2
Query: 502 VDLVNGSSHQREARPKIPRPCAFFNTPKGCRHGANCSYQHDPSLPPRTQQPRGSKRIKLD 323
+D+V+ S + + +PCA+FN+ +GCR+GANC++ HD S R +QP+GSKRIKLD
Sbjct: 385 IDVVSNGSMPGREKQRPTKPCAYFNSARGCRNGANCTFLHDVS-AARKEQPKGSKRIKLD 443
Query: 322 GGIVYR 305
I R
Sbjct: 444 SRIAGR 449
>gb|AAO14624.2|AF467900_1 hypothetical protein [Prunus persica] gi|462419155|gb|EMJ23418.1|
hypothetical protein PRUPE_ppa005842mg [Prunus persica]
Length = 441
Score = 67.8 bits (164), Expect = 1e-09
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Frame = -2
Query: 490 NGSSHQREARPKIPRPCAFFNTPKGCRHGANCSYQHDPSLPPR----TQQPRGSKRIKLD 323
N R+++PKI +PC +FN+ +GCRHGANC+YQHD S PR + +KR+K+D
Sbjct: 377 NNGYKSRDSKPKIMKPCIYFNSSRGCRHGANCAYQHDASFQPRGSSSAPEVHSTKRMKMD 436
>ref|XP_002448705.1| hypothetical protein SORBIDRAFT_06g031850 [Sorghum bicolor]
gi|241939888|gb|EES13033.1| hypothetical protein
SORBIDRAFT_06g031850 [Sorghum bicolor]
Length = 450
Score = 67.0 bits (162), Expect = 2e-09
Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -2
Query: 511 AGNVDLVN-GSSHQREARPKIPRPCAFFNTPKGCRHGANCSYQHDPSLPPRTQQPRGSKR 335
A D+V+ G+ R+ + + +PCA+FN+ +GCR+GANC++ HD S R +QP+GSKR
Sbjct: 381 ASATDIVSSGTMAARDNKQRPTKPCAYFNSARGCRNGANCTFLHDMS-AARKEQPKGSKR 439
Query: 334 IKLDGGIVYR 305
IKLD I R
Sbjct: 440 IKLDSRIAGR 449
>ref|XP_004291394.1| PREDICTED: zinc finger CCCH domain-containing protein 6-like
[Fragaria vesca subsp. vesca]
Length = 427
Score = 66.2 bits (160), Expect = 4e-09
Identities = 31/65 (47%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Frame = -2
Query: 508 GNVDLVNGSSHQREARPKIPRPCAFFNTPKGCRHGANCSYQHDPSLP---PRTQQPRGSK 338
GN + NG R+ +PKI +PC +FN+ +GCRHGANCS+QHD S R + + SK
Sbjct: 359 GNQESFNGYK-SRDPKPKIMKPCIYFNSSRGCRHGANCSFQHDASFQQQGSRVPEVQSSK 417
Query: 337 RIKLD 323
R+K D
Sbjct: 418 RMKFD 422
>ref|XP_002306911.2| hypothetical protein POPTR_0005s25760g [Populus trichocarpa]
gi|550339749|gb|EEE93907.2| hypothetical protein
POPTR_0005s25760g [Populus trichocarpa]
Length = 420
Score = 65.9 bits (159), Expect = 6e-09
Identities = 31/62 (50%), Positives = 44/62 (70%), Gaps = 3/62 (4%)
Frame = -2
Query: 499 DLVNGSSHQREARPKIPRPCAFFNTPKGCRHGANCSYQHDPSLPPR---TQQPRGSKRIK 329
DLVN S RE++ KI +PC +FNTP+GCR+GANC+YQHD S + + + +KR+K
Sbjct: 356 DLVNSKS--RESKHKIMKPCIYFNTPRGCRNGANCAYQHDSSSQKKGSSIAEVQSAKRMK 413
Query: 328 LD 323
+D
Sbjct: 414 MD 415
>ref|XP_003523552.1| PREDICTED: zinc finger CCCH domain-containing protein 6-like
[Glycine max]
Length = 430
Score = 65.9 bits (159), Expect = 6e-09
Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Frame = -2
Query: 511 AGNVDLVNGSSHQREARPKIPRPCAFFNTPKGCRHGANCSYQHDPSLPPRTQQPRG---S 341
A N + + + + ++PKI +PC FFN+ +GCR+GANC+YQHD S PR G S
Sbjct: 360 ATNYETTSYNHRGKVSKPKIMKPCIFFNSSRGCRNGANCAYQHDASFQPRGNTVSGIQSS 419
Query: 340 KRIKLD 323
KR+K+D
Sbjct: 420 KRMKMD 425
>ref|XP_002277913.1| PREDICTED: zinc finger CCCH domain-containing protein 6-like [Vitis
vinifera]
Length = 457
Score = 65.9 bits (159), Expect = 6e-09
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 3/68 (4%)
Frame = -2
Query: 517 IVAGNVDLVNGSSHQREARPKIPRPCAFFNTPKGCRHGANCSYQHDPSLPPRTQ---QPR 347
++ N + V R+++PKI +PC +F++ +GCRHGANCSYQHD SL R + +
Sbjct: 384 VLGMNPETVVTHPKPRDSKPKIMKPCIYFHSSRGCRHGANCSYQHDASLQQRVSSMPEVQ 443
Query: 346 GSKRIKLD 323
+KR+K+D
Sbjct: 444 NAKRMKMD 451