BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zanthoxylum22_contig00032030
         (638 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAA61798.1| RNA-dependent RNA polymerase [Lettuce infectious ...    69   3e-09
ref|NP_619692.2| polyprotein [Lettuce infectious yellows virus] ...    69   3e-09
ref|NP_733943.1| replicase [Lettuce infectious yellows virus]          69   3e-09
gb|AFK94467.1| polymerase, partial [Blackberry yellow vein-assoc...    64   6e-08
gb|ABG33779.1| 286 kDa polyprotein [Citrus leprosis virus C]           64   7e-08
gb|AGE12747.1| ORF1a/1b [Tomato infectious chlorosis virus]            64   1e-07
gb|AGE12744.1| ORF1a/1b [Tomato infectious chlorosis virus]            64   1e-07
ref|YP_003204952.1| ORF 1a/1b fusion protein [Tomato infectious ...    64   1e-07
dbj|BAS69360.1| hypothetical protein [Negevirus Nona 1]                62   2e-07
gb|AJY78053.1| RNA-dependent RNA polymerase, partial [Tomato chl...    62   2e-07
gb|AJY78040.1| RNA-dependent RNA polymerase, partial [Tomato chl...    62   2e-07
gb|AJS10635.1| RNA-dependent RNA polymerase, partial [Tomato chl...    62   2e-07
ref|YP_009109559.1| RNA-dependent RNA polymerase [Macrophomina p...    62   2e-07
ref|YP_293695.1| RNA dependent RNA polymerase, partial [Tomato c...    62   2e-07
gb|AGT79974.1| RNA-dependent RNA polymerase [Tomato chlorosis vi...    62   2e-07
gb|AFK94445.1| polymerase, partial [Blackberry yellow vein-assoc...    62   2e-07
gb|AFK94441.1| polymerase, partial [Blackberry yellow vein-assoc...    62   2e-07
gb|ABJ09583.1| RNA-dependent RNA polymerase, partial [Tomato chl...    62   2e-07
gb|AFK94450.1| polymerase, partial [Blackberry yellow vein-assoc...    62   3e-07
ref|YP_227378.1| polymerase [Blackberry yellow vein-associated v...    61   5e-07

>gb|AAA61798.1| RNA-dependent RNA polymerase [Lettuce infectious yellows virus]
           gi|1097409|prf||2113433B RNA-dependent RNA polymerase
           [Lettuce infectious yellows virus]
          Length = 476

 Score = 68.6 bits (166), Expect = 3e-09
 Identities = 52/158 (32%), Positives = 78/158 (49%), Gaps = 1/158 (0%)
 Frame = -2

Query: 625 GVVLWVMQQGLSGIWKTLFRNGLVCLGSVVYSFDLRRDDIITLDVVGDDFSVESSRPLNV 446
           GV L +  Q  +G   T   N LV LG ++ S+D+  DDI  L V GDD  + S + L  
Sbjct: 289 GVDLELGTQRRTGSPNTWLSNTLVTLGMMLSSYDI--DDIDLLLVSGDDSLIFSRKHL-- 344

Query: 445 ARAVDHFALTFNLTAKLYGSEVAYMCSKYWIRVNGWWYYVQDPIRKFESVSRAVIVATGV 266
                     F + AK       Y CSK+ + +NG    + DPIR FE +S  +     V
Sbjct: 345 PNKTQEINKNFGMEAKYIEKSSPYFCSKFIVELNGKLKVIPDPIRFFEKLSIPIRQEDFV 404

Query: 265 DVG-LKEKWISLRDDLRHYDNALVMEALGEAVKVRLGL 155
           +   +KE++IS +D ++ YDN + +  + EAV  R  +
Sbjct: 405 NGSVVKERFISFKDLMKEYDNDVAVIRIDEAVCYRYSI 442


>ref|NP_619692.2| polyprotein [Lettuce infectious yellows virus]
            gi|313471412|sp|Q83045.2|R1AB_LIYV9 RecName:
            Full=Replicase polyprotein 1ab; Contains: RecName:
            Full=Leader protease; Short=L-PRO; Contains: RecName:
            Full=Methyltransferase/helicase/RNA-directed RNA
            polymerase
          Length = 2379

 Score = 68.6 bits (166), Expect = 3e-09
 Identities = 52/158 (32%), Positives = 78/158 (49%), Gaps = 1/158 (0%)
 Frame = -2

Query: 625  GVVLWVMQQGLSGIWKTLFRNGLVCLGSVVYSFDLRRDDIITLDVVGDDFSVESSRPLNV 446
            GV L +  Q  +G   T   N LV LG ++ S+D+  DDI  L V GDD  + S + L  
Sbjct: 2192 GVDLELGTQRRTGSPNTWLSNTLVTLGMMLSSYDI--DDIDLLLVSGDDSLIFSRKHL-- 2247

Query: 445  ARAVDHFALTFNLTAKLYGSEVAYMCSKYWIRVNGWWYYVQDPIRKFESVSRAVIVATGV 266
                      F + AK       Y CSK+ + +NG    + DPIR FE +S  +     V
Sbjct: 2248 PNKTQEINKNFGMEAKYIEKSSPYFCSKFIVELNGKLKVIPDPIRFFEKLSIPIRQEDFV 2307

Query: 265  DVG-LKEKWISLRDDLRHYDNALVMEALGEAVKVRLGL 155
            +   +KE++IS +D ++ YDN + +  + EAV  R  +
Sbjct: 2308 NGSVVKERFISFKDLMKEYDNDVAVIRIDEAVCYRYSI 2345


>ref|NP_733943.1| replicase [Lettuce infectious yellows virus]
          Length = 1967

 Score = 68.6 bits (166), Expect = 3e-09
 Identities = 52/158 (32%), Positives = 78/158 (49%), Gaps = 1/158 (0%)
 Frame = -2

Query: 625  GVVLWVMQQGLSGIWKTLFRNGLVCLGSVVYSFDLRRDDIITLDVVGDDFSVESSRPLNV 446
            GV L +  Q  +G   T   N LV LG ++ S+D+  DDI  L V GDD  + S + L  
Sbjct: 1780 GVDLELGTQRRTGSPNTWLSNTLVTLGMMLSSYDI--DDIDLLLVSGDDSLIFSRKHL-- 1835

Query: 445  ARAVDHFALTFNLTAKLYGSEVAYMCSKYWIRVNGWWYYVQDPIRKFESVSRAVIVATGV 266
                      F + AK       Y CSK+ + +NG    + DPIR FE +S  +     V
Sbjct: 1836 PNKTQEINKNFGMEAKYIEKSSPYFCSKFIVELNGKLKVIPDPIRFFEKLSIPIRQEDFV 1895

Query: 265  DVG-LKEKWISLRDDLRHYDNALVMEALGEAVKVRLGL 155
            +   +KE++IS +D ++ YDN + +  + EAV  R  +
Sbjct: 1896 NGSVVKERFISFKDLMKEYDNDVAVIRIDEAVCYRYSI 1933


>gb|AFK94467.1| polymerase, partial [Blackberry yellow vein-associated virus]
          Length = 399

 Score = 64.3 bits (155), Expect = 6e-08
 Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 2/159 (1%)
 Frame = -2

Query: 625 GVVLWVMQQGLSGIWKTLFRNGLVCLGSVVYSFDLRRDDIITLDVVGDDFSVESSRPL-N 449
           GV L +  QG +G   T   N LV LG ++ ++ +  DDI  L V GDD  + S   L N
Sbjct: 238 GVSLELGAQGRTGSPNTWLSNTLVTLGIILSTYKI--DDIDLLLVSGDDSLIFSKEDLPN 295

Query: 448 VARAVDHFALTFNLTAKLYGSEVAYMCSKYWIRVNGWWYYVQDPIRKFESVSRAVIVATG 269
           +A  ++     F + AK   + V Y CSK+ I   G    V DP+R FE +S  + +   
Sbjct: 296 LANQINQ---DFGMEAKFIVNSVPYFCSKFIIEDRGEIKVVPDPVRFFEKLSVPIRLEDF 352

Query: 268 V-DVGLKEKWISLRDDLRHYDNALVMEALGEAVKVRLGL 155
           + +  LKEK+ S +D +  +D+  V   +   + +R G+
Sbjct: 353 LSETLLKEKYTSFKDLMVFFDSDTVCVLVDRLICIRYGI 391


>gb|ABG33779.1| 286 kDa polyprotein [Citrus leprosis virus C]
          Length = 2512

 Score = 63.9 bits (154), Expect = 7e-08
 Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 1/179 (0%)
 Frame = -2

Query: 625  GVVLWVMQQGLSGIWKTLFRNGLVCLGSVVYSFDLRRDDIITLDVVGDDFSVESSRPLNV 446
            G+   V  Q  SG   T   N L  +     SFDLR+   + L V   D S+      ++
Sbjct: 2319 GLKFKVQVQRRSGDGGTFIGNTLFLIALCARSFDLRK---LKLAVFSGDDSLLVGEKRDL 2375

Query: 445  ARAVDHFALTFNLTAKLYGSEVAY-MCSKYWIRVNGWWYYVQDPIRKFESVSRAVIVATG 269
                 +F+  FNL  K + +   Y  CSK+ I V   WY++ DP++ +  ++R  +V  G
Sbjct: 2376 QCDSQNFSDLFNLDVKFFPNFKYYHFCSKFLIAVEDRWYFIPDPVKLYIRLARLDLVNWG 2435

Query: 268  VDVGLKEKWISLRDDLRHYDNALVMEALGEAVKVRLGLKFSPMGIIRALATFAADEGEY 92
                ++E  ISL+D  ++Y +  ++  L +AV  R  +   P  + R + +  + + E+
Sbjct: 2436 ---HIEEYRISLKDTTKYYCDDSIVRELSKAVCDRYPVAVDPAEVFRVVCSIVSSKDEF 2491


>gb|AGE12747.1| ORF1a/1b [Tomato infectious chlorosis virus]
          Length = 2394

 Score = 63.5 bits (153), Expect = 1e-07
 Identities = 50/144 (34%), Positives = 70/144 (48%), Gaps = 1/144 (0%)
 Frame = -2

Query: 637  SMMFGVVLWVMQQGLSGIWKTLFRNGLVCLGSVVYSFDLRRDDIITLDVVGDDFSVESSR 458
            S + G+ L +  Q  +G   T   N L  LG ++  + L   D+I   V GDD  + S R
Sbjct: 2203 SSVSGIDLELGSQRRTGSPNTWLSNTLATLGMLMSFYKLEDIDLIL--VSGDDSLIFSRR 2260

Query: 457  PLNVARAVDHFALTFNLTAKLYGSEVAYMCSKYWIRVNGWWYYVQDPIRKFESVSRAV-I 281
             L     V      F + AKL  + VAY CSKY I   G    V DP+R FE +S  V +
Sbjct: 2261 KL--PNVVGEINKCFGMEAKLIENSVAYFCSKYIISDKGKIKVVPDPVRFFEKLSTPVRL 2318

Query: 280  VATGVDVGLKEKWISLRDDLRHYD 209
                  + L+E++IS +D +R YD
Sbjct: 2319 DEIDSKLSLRERYISFKDLMRGYD 2342


>gb|AGE12744.1| ORF1a/1b [Tomato infectious chlorosis virus]
          Length = 2394

 Score = 63.5 bits (153), Expect = 1e-07
 Identities = 50/144 (34%), Positives = 70/144 (48%), Gaps = 1/144 (0%)
 Frame = -2

Query: 637  SMMFGVVLWVMQQGLSGIWKTLFRNGLVCLGSVVYSFDLRRDDIITLDVVGDDFSVESSR 458
            S + G+ L +  Q  +G   T   N L  LG ++  + L   D+I   V GDD  + S R
Sbjct: 2203 SSVSGIDLELGSQRRTGSPNTWLSNTLATLGMLMSFYKLEDIDLIL--VSGDDSLIFSRR 2260

Query: 457  PLNVARAVDHFALTFNLTAKLYGSEVAYMCSKYWIRVNGWWYYVQDPIRKFESVSRAV-I 281
             L     V      F + AKL  + VAY CSKY I   G    V DP+R FE +S  V +
Sbjct: 2261 KL--PNVVGEINKCFGMEAKLIENSVAYFCSKYIISDKGKIKVVPDPVRFFEKLSTPVRL 2318

Query: 280  VATGVDVGLKEKWISLRDDLRHYD 209
                  + L+E++IS +D +R YD
Sbjct: 2319 DEIDSKLSLRERYISFKDLMRGYD 2342


>ref|YP_003204952.1| ORF 1a/1b fusion protein [Tomato infectious chlorosis virus]
            gi|241992719|gb|ACS73872.1| ORF 1a/1b fusion protein
            [Tomato infectious chlorosis virus]
          Length = 2394

 Score = 63.5 bits (153), Expect = 1e-07
 Identities = 50/144 (34%), Positives = 70/144 (48%), Gaps = 1/144 (0%)
 Frame = -2

Query: 637  SMMFGVVLWVMQQGLSGIWKTLFRNGLVCLGSVVYSFDLRRDDIITLDVVGDDFSVESSR 458
            S + G+ L +  Q  +G   T   N L  LG ++  + L   D+I   V GDD  + S R
Sbjct: 2203 SSVSGIDLELGSQRRTGSPNTWLSNTLATLGMLMSFYKLEDIDLIL--VSGDDSLIFSRR 2260

Query: 457  PLNVARAVDHFALTFNLTAKLYGSEVAYMCSKYWIRVNGWWYYVQDPIRKFESVSRAV-I 281
             L     V      F + AKL  + VAY CSKY I   G    V DP+R FE +S  V +
Sbjct: 2261 KL--PNVVGEINKCFGMEAKLIENSVAYFCSKYIISDKGKIKVVPDPVRFFEKLSTPVRL 2318

Query: 280  VATGVDVGLKEKWISLRDDLRHYD 209
                  + L+E++IS +D +R YD
Sbjct: 2319 DEIDSKLSLRERYISFKDLMRGYD 2342


>dbj|BAS69360.1| hypothetical protein [Negevirus Nona 1]
          Length = 2361

 Score = 62.4 bits (150), Expect = 2e-07
 Identities = 44/144 (30%), Positives = 68/144 (47%)
 Frame = -2

Query: 586  IWKTLFRNGLVCLGSVVYSFDLRRDDIITLDVVGDDFSVESSRPLNVARAVDHFALTFNL 407
            I  TLF  G++C        DL     + L +   D S+     LN  +   HF L FNL
Sbjct: 2187 IGNTLFLMGVIC--------DLIPVSTLDLAIFSGDDSLLYGHNLNQYKNSQHFGLKFNL 2238

Query: 406  TAKLYGSEVAYMCSKYWIRVNGWWYYVQDPIRKFESVSRAVIVATGVDVGLKEKWISLRD 227
              K +  E +Y CSK+ + VN  W +   P++    + R  +V  G    ++E  IS  D
Sbjct: 2239 EIKFFEFEHSYFCSKFLLIVNDRWTFTPCPVKFMTKLGRHDMVNPG---HVEEYRISFID 2295

Query: 226  DLRHYDNALVMEALGEAVKVRLGL 155
             +R+Y +  V  ++ EA+K R G+
Sbjct: 2296 TVRNYSDYHVCLSVAEALKERYGI 2319


>gb|AJY78053.1| RNA-dependent RNA polymerase, partial [Tomato chlorosis virus]
          Length = 504

 Score = 62.4 bits (150), Expect = 2e-07
 Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
 Frame = -2

Query: 601 QGLSGIWKTLFRNGLVCLGSVVYSFDLRRDDIITLDVVGDDFSVESSRPLNVARAVDHFA 422
           Q  +G   T   N LV +G ++  +DL  DDI    V GDD  + SS+PL      D   
Sbjct: 325 QRRTGSPNTWLSNTLVTMGIILSVYDL--DDIDLFLVSGDDSLIFSSKPLK--NKTDEIN 380

Query: 421 LTFNLTAKLYGSEVAYMCSKYWIRVNGWWYYVQDPIRKFESVSRAVIVATGV-DVGLKEK 245
             F   AK+  + V Y CSKY I   G    V DP+R FE +S  + V   + D  ++EK
Sbjct: 381 RDFGFEAKMIENSVPYFCSKYIISDRGKIRVVPDPVRFFEKLSVPIRVQDFMSDTLMREK 440

Query: 244 WISLRDDLRHYD 209
           + S +D ++ +D
Sbjct: 441 FRSYKDLMKDFD 452


>gb|AJY78040.1| RNA-dependent RNA polymerase, partial [Tomato chlorosis virus]
          Length = 504

 Score = 62.4 bits (150), Expect = 2e-07
 Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
 Frame = -2

Query: 601 QGLSGIWKTLFRNGLVCLGSVVYSFDLRRDDIITLDVVGDDFSVESSRPLNVARAVDHFA 422
           Q  +G   T   N LV +G ++  +DL  DDI    V GDD  + SS+PL      D   
Sbjct: 325 QRRTGSPNTWLSNTLVTMGIILSVYDL--DDIDLFLVSGDDSLIFSSKPLK--NKTDEMN 380

Query: 421 LTFNLTAKLYGSEVAYMCSKYWIRVNGWWYYVQDPIRKFESVSRAVIVATGV-DVGLKEK 245
             F   AK+  + V Y CSKY I   G    V DP+R FE +S  + V   + D  ++EK
Sbjct: 381 RDFGFEAKMIENSVPYFCSKYIISDRGKIRVVPDPVRFFEKLSVPIRVQDFMSDTLMREK 440

Query: 244 WISLRDDLRHYD 209
           + S +D ++ +D
Sbjct: 441 FRSYKDLMKDFD 452


>gb|AJS10635.1| RNA-dependent RNA polymerase, partial [Tomato chlorosis virus]
           gi|765527181|gb|AJS10647.1| RNA-dependent RNA
           polymerase, partial [Tomato chlorosis virus]
          Length = 504

 Score = 62.4 bits (150), Expect = 2e-07
 Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
 Frame = -2

Query: 601 QGLSGIWKTLFRNGLVCLGSVVYSFDLRRDDIITLDVVGDDFSVESSRPLNVARAVDHFA 422
           Q  +G   T   N LV +G ++  +DL  DDI    V GDD  + SS+PL      D   
Sbjct: 325 QRRTGSPNTWLSNTLVTMGIILSVYDL--DDIDLFLVSGDDSLIFSSKPLK--NKTDEIN 380

Query: 421 LTFNLTAKLYGSEVAYMCSKYWIRVNGWWYYVQDPIRKFESVSRAVIVATGV-DVGLKEK 245
             F   AK+  + V Y CSKY I   G    V DP+R FE +S  + V   + D  ++EK
Sbjct: 381 RDFGFEAKMIENSVPYFCSKYIISDRGKIRVVPDPVRFFEKLSVPIRVQDFMSDTLMREK 440

Query: 244 WISLRDDLRHYD 209
           + S +D ++ +D
Sbjct: 441 FRSYKDLMKDFD 452


>ref|YP_009109559.1| RNA-dependent RNA polymerase [Macrophomina phaseolina tobamo-like
            virus] gi|669258010|gb|AII21816.1| RNA-dependent RNA
            polymerase [Macrophomina phaseolina tobamo-like virus]
          Length = 2128

 Score = 62.4 bits (150), Expect = 2e-07
 Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 4/158 (2%)
 Frame = -2

Query: 625  GVVLWVMQQGLSGIWKTLFRNGLVCLGSVVYSFDLRRDDIITLDVVGDD--FSVESSRPL 452
            G+ +++  Q  SG   T F N ++ + S+ YS DL+ +++     +GDD  F +  S  L
Sbjct: 1935 GLCVYLRYQRKSGDVTTAFGNTVLNMTSMAYSLDLQPEEVRAAMFLGDDSWFQLVDSPSL 1994

Query: 451  N--VARAVDHFALTFNLTAKLYGSEVAYMCSKYWIRVNGWWYYVQDPIRKFESVSRAVIV 278
               +    D  ++ FN  AK    E  Y C  Y I        + DPI++   + R  + 
Sbjct: 1995 RRRIRECSDKISIHFNGEAKTAYFETGYFCGLYIIDTPSGVKLLADPIKRAVKLGRWDVK 2054

Query: 277  ATGVDVGLKEKWISLRDDLRHYDNALVMEALGEAVKVR 164
               V   L E W+S +D +R+YD+    E L  AV  R
Sbjct: 2055 EKSV---LYENWLSFKDLMRNYDDECAQELLARAVYER 2089


>ref|YP_293695.1| RNA dependent RNA polymerase, partial [Tomato chlorosis virus]
           gi|62912413|gb|AAY21795.1| RNA dependent RNA polymerase,
           partial [Tomato chlorosis virus]
           gi|162415400|gb|ABX89249.1| RNA dependent RNA
           polymerase, partial [Tomato chlorosis virus]
           gi|395132509|gb|AFN44465.1| RNA-dependent RNA
           polymerase, partial [Tomato chlorosis virus]
           gi|511637604|gb|AGN91001.1| RNA-dependent RNA
           polymerase, partial [Tomato chlorosis virus]
           gi|550848636|gb|AGY14432.1| RNA-dependent RNA
           polymerase, partial [Tomato chlorosis virus]
           gi|765527160|gb|AJS10630.1| RNA-dependent RNA
           polymerase, partial [Tomato chlorosis virus]
           gi|765527173|gb|AJS10641.1| RNA-dependent RNA
           polymerase, partial [Tomato chlorosis virus]
           gi|765527176|gb|AJS10643.1| RNA-dependent RNA
           polymerase, partial [Tomato chlorosis virus]
           gi|765527186|gb|AJS10651.1| RNA-dependent RNA
           polymerase, partial [Tomato chlorosis virus]
           gi|765527191|gb|AJS10655.1| RNA-dependent RNA
           polymerase, partial [Tomato chlorosis virus]
          Length = 504

 Score = 62.4 bits (150), Expect = 2e-07
 Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
 Frame = -2

Query: 601 QGLSGIWKTLFRNGLVCLGSVVYSFDLRRDDIITLDVVGDDFSVESSRPLNVARAVDHFA 422
           Q  +G   T   N LV +G ++  +DL  DDI    V GDD  + SS+PL      D   
Sbjct: 325 QRRTGSPNTWLSNTLVTMGIILSVYDL--DDIDLFLVSGDDSLIFSSKPLK--NKTDEIN 380

Query: 421 LTFNLTAKLYGSEVAYMCSKYWIRVNGWWYYVQDPIRKFESVSRAVIVATGV-DVGLKEK 245
             F   AK+  + V Y CSKY I   G    V DP+R FE +S  + V   + D  ++EK
Sbjct: 381 RDFGFEAKMIENSVPYFCSKYIISDRGKIRVVPDPVRFFEKLSVPIRVQDFMSDTLMREK 440

Query: 244 WISLRDDLRHYD 209
           + S +D ++ +D
Sbjct: 441 FRSYKDLMKDFD 452


>gb|AGT79974.1| RNA-dependent RNA polymerase [Tomato chlorosis virus]
          Length = 481

 Score = 62.4 bits (150), Expect = 2e-07
 Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
 Frame = -2

Query: 601 QGLSGIWKTLFRNGLVCLGSVVYSFDLRRDDIITLDVVGDDFSVESSRPLNVARAVDHFA 422
           Q  +G   T   N LV +G ++  +DL  DDI    V GDD  + SS+PL      D   
Sbjct: 302 QRRTGSPNTWLSNTLVTMGIILSVYDL--DDIDLFLVSGDDSLIFSSKPLK--NKTDEIN 357

Query: 421 LTFNLTAKLYGSEVAYMCSKYWIRVNGWWYYVQDPIRKFESVSRAVIVATGV-DVGLKEK 245
             F   AK+  + V Y CSKY I   G    V DP+R FE +S  + V   + D  ++EK
Sbjct: 358 RDFGFEAKMIENSVPYFCSKYIISDRGKIRVVPDPVRFFEKLSVPIRVQDFMSDTLMREK 417

Query: 244 WISLRDDLRHYD 209
           + S +D ++ +D
Sbjct: 418 FRSYKDLMKDFD 429


>gb|AFK94445.1| polymerase, partial [Blackberry yellow vein-associated virus]
          Length = 399

 Score = 62.4 bits (150), Expect = 2e-07
 Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 2/159 (1%)
 Frame = -2

Query: 625 GVVLWVMQQGLSGIWKTLFRNGLVCLGSVVYSFDLRRDDIITLDVVGDDFSVESSRPL-N 449
           GV L +  Q  +G   T   N LV LG ++ ++++  DDI  L V GDD  + S   L N
Sbjct: 238 GVSLELGAQRRTGSPNTWLSNTLVTLGIILSTYEI--DDIDLLLVSGDDSLIFSKEDLPN 295

Query: 448 VARAVDHFALTFNLTAKLYGSEVAYMCSKYWIRVNGWWYYVQDPIRKFESVSRAVIVATG 269
           +A  ++     F + AK   + V Y CSK+ I   G    V DP+R FE +S  + +   
Sbjct: 296 LANQINQ---DFGMEAKFIVNSVPYFCSKFIIEDRGEIKVVPDPVRFFEKLSVPIRLEDF 352

Query: 268 V-DVGLKEKWISLRDDLRHYDNALVMEALGEAVKVRLGL 155
           + +  LKEK+ S +D +  +D+  V   +   + +R G+
Sbjct: 353 LSETLLKEKYTSFKDLMVFFDSDTVCVLVDRLICIRYGI 391


>gb|AFK94441.1| polymerase, partial [Blackberry yellow vein-associated virus]
          Length = 399

 Score = 62.4 bits (150), Expect = 2e-07
 Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 2/159 (1%)
 Frame = -2

Query: 625 GVVLWVMQQGLSGIWKTLFRNGLVCLGSVVYSFDLRRDDIITLDVVGDDFSVESSRPL-N 449
           GV L +  Q  +G   T   N LV LG ++ ++ +  DDI  L V GDD  + S   L N
Sbjct: 238 GVSLELGAQRRTGSPNTWLSNTLVTLGIILSTYKI--DDIDLLLVSGDDSLIFSKEDLPN 295

Query: 448 VARAVDHFALTFNLTAKLYGSEVAYMCSKYWIRVNGWWYYVQDPIRKFESVSRAVIVATG 269
           +A  ++     F + AK   + V Y CSK+ I   G    V DP+R FE +S  + +   
Sbjct: 296 LANQINQ---DFGMEAKFIVNSVPYFCSKFIIEDRGEIKVVPDPVRFFEKLSVPIRLEDF 352

Query: 268 V-DVGLKEKWISLRDDLRHYDNALVMEALGEAVKVRLGL 155
           + +  LKEK+ S +D +  +D+  V   +   + +R G+
Sbjct: 353 LSETLLKEKYTSFKDPMVFFDSDTVCVLVDRLICIRYGI 391


>gb|ABJ09583.1| RNA-dependent RNA polymerase, partial [Tomato chlorosis virus]
           gi|678126418|gb|AIM47755.1| RNA-dependent RNA
           polymerase, partial [Tomato chlorosis virus]
          Length = 504

 Score = 62.4 bits (150), Expect = 2e-07
 Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
 Frame = -2

Query: 601 QGLSGIWKTLFRNGLVCLGSVVYSFDLRRDDIITLDVVGDDFSVESSRPLNVARAVDHFA 422
           Q  +G   T   N LV +G ++  +DL  DDI    V GDD  + SS+PL      D   
Sbjct: 325 QRRTGSPNTWLSNTLVTMGIILSVYDL--DDIDLFLVSGDDSLIFSSKPLK--NKTDEIN 380

Query: 421 LTFNLTAKLYGSEVAYMCSKYWIRVNGWWYYVQDPIRKFESVSRAVIVATGV-DVGLKEK 245
             F   AK+  + V Y CSKY I   G    V DP+R FE +S  + V   + D  ++EK
Sbjct: 381 RDFGFEAKMIENSVPYFCSKYIISDRGKIRVVPDPVRFFEKLSVPIRVQDFMSDTLMREK 440

Query: 244 WISLRDDLRHYD 209
           + S +D ++ +D
Sbjct: 441 FRSYKDLMKDFD 452


>gb|AFK94450.1| polymerase, partial [Blackberry yellow vein-associated virus]
          Length = 399

 Score = 62.0 bits (149), Expect = 3e-07
 Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 2/159 (1%)
 Frame = -2

Query: 625 GVVLWVMQQGLSGIWKTLFRNGLVCLGSVVYSFDLRRDDIITLDVVGDDFSVESSRPL-N 449
           GV L +  Q  +G   T   N LV LG ++ ++ +  DDI  L V GDD  + S   L N
Sbjct: 238 GVSLELGAQRRTGSPNTWLSNTLVTLGIILSTYKI--DDIDLLLVSGDDSLIFSKEDLPN 295

Query: 448 VARAVDHFALTFNLTAKLYGSEVAYMCSKYWIRVNGWWYYVQDPIRKFESVSRAVIVATG 269
           +A  ++     F + AK   + V+Y CSK+ I   G    V DP+R FE +S  + +   
Sbjct: 296 LANQINQ---DFGMEAKFIVNSVSYFCSKFIIEDRGEIKVVPDPVRFFEKLSVPIRLEDF 352

Query: 268 V-DVGLKEKWISLRDDLRHYDNALVMEALGEAVKVRLGL 155
           + +  LKEK+ S +D +  +D+  V   +   + +R G+
Sbjct: 353 LSETLLKEKYTSFKDLMVSFDSDTVCVLVDRLICIRYGI 391


>ref|YP_227378.1| polymerase [Blackberry yellow vein-associated virus]
          Length = 505

 Score = 61.2 bits (147), Expect = 5e-07
 Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 2/159 (1%)
 Frame = -2

Query: 625 GVVLWVMQQGLSGIWKTLFRNGLVCLGSVVYSFDLRRDDIITLDVVGDDFSVESSRPL-N 449
           GV L +  Q  +G   T   N LV LG ++ ++ +  DDI  L V GDD  + S   L N
Sbjct: 318 GVSLELGAQRRTGSPNTWLSNTLVTLGIILSTYKI--DDIDLLLVSGDDSLIFSKEDLPN 375

Query: 448 VARAVDHFALTFNLTAKLYGSEVAYMCSKYWIRVNGWWYYVQDPIRKFESVSRAVIVATG 269
           +A  ++     F + AK   + V Y CSK+ I   G    V DP+R FE +S  + +   
Sbjct: 376 LANQINQ---DFGMEAKFIVNSVPYFCSKFIIEDRGEIKVVPDPVRFFEKLSVPIRLEDF 432

Query: 268 V-DVGLKEKWISLRDDLRHYDNALVMEALGEAVKVRLGL 155
           + +  LKEK+ S +D +  +D+  V   +   + +R G+
Sbjct: 433 LSETLLKEKYTSFKDLMVFFDSDTVCVLVDRLICIRYGI 471