BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zanthoxylum22_contig00029760
         (722 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV su...   407   e-111
ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV su...   407   e-111
ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citr...   407   e-111
gb|KDO63582.1| hypothetical protein CISIN_1g0005254mg, partial [...   398   e-108
ref|XP_011014513.1| PREDICTED: DNA-directed RNA polymerase IV su...   313   5e-83
ref|XP_011029161.1| PREDICTED: DNA-directed RNA polymerase IV su...   313   5e-83
ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-...   309   1e-81
ref|XP_012476048.1| PREDICTED: DNA-directed RNA polymerase IV su...   305   2e-80
gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium r...   305   2e-80
ref|XP_012476045.1| PREDICTED: DNA-directed RNA polymerase IV su...   305   2e-80
ref|XP_012087018.1| PREDICTED: DNA-directed RNA polymerase IV su...   303   6e-80
gb|KDP25521.1| hypothetical protein JCGZ_20677 [Jatropha curcas]      303   6e-80
ref|XP_007210915.1| hypothetical protein PRUPE_ppa000278mg [Prun...   301   3e-79
ref|XP_008238796.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   301   4e-79
ref|XP_003611164.2| DNA-directed RNA polymerase [Medicago trunca...   300   8e-79
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin...   296   9e-78
ref|XP_010108047.1| DNA-directed RNA polymerase D subunit 1 [Mor...   295   2e-77
ref|XP_002298071.2| hypothetical protein POPTR_0001s08650g [Popu...   293   6e-77
ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV su...   293   8e-77
ref|XP_012488706.1| PREDICTED: DNA-directed RNA polymerase IV su...   292   1e-76

>ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Citrus sinensis] gi|568847098|ref|XP_006477377.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
            isoform X3 [Citrus sinensis]
            gi|568847100|ref|XP_006477378.1| PREDICTED: DNA-directed
            RNA polymerase IV subunit 1-like isoform X4 [Citrus
            sinensis]
          Length = 1443

 Score =  407 bits (1047), Expect = e-111
 Identities = 202/241 (83%), Positives = 221/241 (91%), Gaps = 1/241 (0%)
 Frame = -3

Query: 720  MLISNEDCSSINMQKECSDIFYVTVMIVENSK-SSIELETIQKWLIPFLLRTVVKGFQEI 544
            MLISN+DCSSINMQKEC+D F VTVMIVEN K +SI+LETIQ W++PFLL+TVVKGF+EI
Sbjct: 1019 MLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREI 1078

Query: 543  KKVDILWKDKPRESKSLNDSFGELYLKVSMSRGCHRTSLWSALMNGCLQIMDMIDWTRSH 364
            KKVDILWKDK + SKS +DSFGELYL+VSMS  CH TSLWSALMN C QIMDMIDWTRSH
Sbjct: 1079 KKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSH 1138

Query: 363  PDKIRSFCLVYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKG 184
            PD IRSFCL YGIDAG++FFL NLESA+SDT KNILPEHL +VAN+LSATGEFVGLNAKG
Sbjct: 1139 PDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKG 1198

Query: 183  LAQQREHASVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSIDALAWGKVPSVGTGGHFD 4
            LA QR+H+SVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGS+DAL WGKVPSVGTGGHFD
Sbjct: 1199 LALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFD 1258

Query: 3    I 1
            I
Sbjct: 1259 I 1259


>ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Citrus sinensis]
          Length = 1481

 Score =  407 bits (1047), Expect = e-111
 Identities = 202/241 (83%), Positives = 221/241 (91%), Gaps = 1/241 (0%)
 Frame = -3

Query: 720  MLISNEDCSSINMQKECSDIFYVTVMIVENSK-SSIELETIQKWLIPFLLRTVVKGFQEI 544
            MLISN+DCSSINMQKEC+D F VTVMIVEN K +SI+LETIQ W++PFLL+TVVKGF+EI
Sbjct: 1057 MLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREI 1116

Query: 543  KKVDILWKDKPRESKSLNDSFGELYLKVSMSRGCHRTSLWSALMNGCLQIMDMIDWTRSH 364
            KKVDILWKDK + SKS +DSFGELYL+VSMS  CH TSLWSALMN C QIMDMIDWTRSH
Sbjct: 1117 KKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSH 1176

Query: 363  PDKIRSFCLVYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKG 184
            PD IRSFCL YGIDAG++FFL NLESA+SDT KNILPEHL +VAN+LSATGEFVGLNAKG
Sbjct: 1177 PDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKG 1236

Query: 183  LAQQREHASVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSIDALAWGKVPSVGTGGHFD 4
            LA QR+H+SVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGS+DAL WGKVPSVGTGGHFD
Sbjct: 1237 LALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFD 1296

Query: 3    I 1
            I
Sbjct: 1297 I 1297


>ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citrus clementina]
            gi|557542783|gb|ESR53761.1| hypothetical protein
            CICLE_v10018489mg [Citrus clementina]
          Length = 1443

 Score =  407 bits (1047), Expect = e-111
 Identities = 202/241 (83%), Positives = 221/241 (91%), Gaps = 1/241 (0%)
 Frame = -3

Query: 720  MLISNEDCSSINMQKECSDIFYVTVMIVENSK-SSIELETIQKWLIPFLLRTVVKGFQEI 544
            MLISN+DCSSINMQKEC+D F VTVMIVEN K +SI+LETIQ W++PFLL+TVVKGF+EI
Sbjct: 1019 MLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREI 1078

Query: 543  KKVDILWKDKPRESKSLNDSFGELYLKVSMSRGCHRTSLWSALMNGCLQIMDMIDWTRSH 364
            KKVDILWKDK + SKS +DSFGELYL+VSMS  CH TSLWSALMN C QIMDMIDWTRSH
Sbjct: 1079 KKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSH 1138

Query: 363  PDKIRSFCLVYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKG 184
            PD IRSFCL YGIDAG++FFL NLESA+SDT KNILPEHL +VAN+LSATGEFVGLNAKG
Sbjct: 1139 PDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKG 1198

Query: 183  LAQQREHASVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSIDALAWGKVPSVGTGGHFD 4
            LA QR+H+SVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGS+DAL WGKVPSVGTGGHFD
Sbjct: 1199 LALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFD 1258

Query: 3    I 1
            I
Sbjct: 1259 I 1259


>gb|KDO63582.1| hypothetical protein CISIN_1g0005254mg, partial [Citrus sinensis]
          Length = 363

 Score =  398 bits (1023), Expect = e-108
 Identities = 197/235 (83%), Positives = 215/235 (91%), Gaps = 1/235 (0%)
 Frame = -3

Query: 702 DCSSINMQKECSDIFYVTVMIVENSK-SSIELETIQKWLIPFLLRTVVKGFQEIKKVDIL 526
           DCSSINMQKEC+D F VTVMIVEN K +SI+LETIQ W++PFLL+TVVKGF+EIKKVDIL
Sbjct: 1   DCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDIL 60

Query: 525 WKDKPRESKSLNDSFGELYLKVSMSRGCHRTSLWSALMNGCLQIMDMIDWTRSHPDKIRS 346
           WKDK + SKS +DSFGELYL+VSMS  CH TSLWSALMN C QIMDMIDWTRSHPD IRS
Sbjct: 61  WKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRS 120

Query: 345 FCLVYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLAQQRE 166
           FCL YGIDAG++FFL NLESA+SDT KNILPEHL +VAN+LSATGEFVGLNAKGLA QR+
Sbjct: 121 FCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRK 180

Query: 165 HASVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSIDALAWGKVPSVGTGGHFDI 1
           H+SVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGS+DAL WGKVPSVGTGGHFDI
Sbjct: 181 HSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDI 235


>ref|XP_011014513.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Populus
            euphratica] gi|743940107|ref|XP_011014514.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1-like [Populus
            euphratica] gi|743940109|ref|XP_011014516.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1-like [Populus
            euphratica] gi|743940111|ref|XP_011014517.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1-like [Populus
            euphratica] gi|743940113|ref|XP_011014518.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1-like [Populus
            euphratica] gi|743940115|ref|XP_011014519.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1-like [Populus
            euphratica] gi|743940117|ref|XP_011014520.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1-like [Populus
            euphratica] gi|743940119|ref|XP_011014522.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1-like [Populus
            euphratica]
          Length = 1488

 Score =  313 bits (803), Expect = 5e-83
 Identities = 160/239 (66%), Positives = 187/239 (78%), Gaps = 1/239 (0%)
 Frame = -3

Query: 714  ISNEDCSSINMQKECSDIFYVTVMIVENSKSS-IELETIQKWLIPFLLRTVVKGFQEIKK 538
            I++  C+  +  KE  + F +TV IVE SK+  IELETIQ  +IPFLL TV+KGF EI+K
Sbjct: 1050 ITSRYCTVADTWKEKKETFCITVTIVETSKNEFIELETIQDLMIPFLLETVIKGFMEIRK 1109

Query: 537  VDILWKDKPRESKSLNDSFGELYLKVSMSRGCHRTSLWSALMNGCLQIMDMIDWTRSHPD 358
            VDILW DKP+  KS N   GEL+L+V MSRG  +T LW+ LM+ CL IMD+IDW RSHPD
Sbjct: 1110 VDILWNDKPKIPKSHNRLRGELFLRVHMSRGSDKTRLWNQLMDDCLSIMDIIDWARSHPD 1169

Query: 357  KIRSFCLVYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLA 178
             I   CL YGIDAG KFFLNNL+SA+SD  K +LPEHL LVAN LS TGEFVGLNAKGL 
Sbjct: 1170 NIHECCLAYGIDAGWKFFLNNLQSAMSDVGKTLLPEHLLLVANCLSVTGEFVGLNAKGLK 1229

Query: 177  QQREHASVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSIDALAWGKVPSVGTGGHFDI 1
            +QREHASVS+PFVQA FSNPG  FI+AAKAG VD+LQGSIDALAWGK+P++GT G FDI
Sbjct: 1230 RQREHASVSTPFVQACFSNPGDCFIRAAKAGVVDDLQGSIDALAWGKIPAIGT-GQFDI 1287


>ref|XP_011029161.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Populus
            euphratica] gi|743852096|ref|XP_011029162.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Populus
            euphratica] gi|743852100|ref|XP_011029163.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Populus
            euphratica] gi|743852104|ref|XP_011029164.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Populus
            euphratica] gi|743852108|ref|XP_011029165.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Populus
            euphratica] gi|743852112|ref|XP_011029166.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Populus
            euphratica] gi|743852116|ref|XP_011029168.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Populus
            euphratica] gi|743852120|ref|XP_011029169.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Populus
            euphratica] gi|743852124|ref|XP_011029170.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Populus
            euphratica]
          Length = 1488

 Score =  313 bits (803), Expect = 5e-83
 Identities = 160/239 (66%), Positives = 187/239 (78%), Gaps = 1/239 (0%)
 Frame = -3

Query: 714  ISNEDCSSINMQKECSDIFYVTVMIVENSKSS-IELETIQKWLIPFLLRTVVKGFQEIKK 538
            I++  C+  +  KE  + F +TV IVE SK+  IELETIQ  +IPFLL TV+KGF EI+K
Sbjct: 1050 ITSRYCTVADTWKEKKETFCITVTIVETSKNEFIELETIQDLMIPFLLETVIKGFMEIRK 1109

Query: 537  VDILWKDKPRESKSLNDSFGELYLKVSMSRGCHRTSLWSALMNGCLQIMDMIDWTRSHPD 358
            VDILW DKP+  KS N   GEL+L+V MSRG  +T LW+ LM+ CL IMD+IDW RSHPD
Sbjct: 1110 VDILWNDKPKIPKSHNRLRGELFLRVHMSRGSDKTRLWNQLMDDCLSIMDIIDWARSHPD 1169

Query: 357  KIRSFCLVYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLA 178
             I   CL YGIDAG KFFLNNL+SA+SD  K +LPEHL LVAN LS TGEFVGLNAKGL 
Sbjct: 1170 NIHECCLAYGIDAGWKFFLNNLQSAMSDVGKTLLPEHLLLVANCLSVTGEFVGLNAKGLK 1229

Query: 177  QQREHASVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSIDALAWGKVPSVGTGGHFDI 1
            +QREHASVS+PFVQA FSNPG  FI+AAKAG VD+LQGSIDALAWGK+P++GT G FDI
Sbjct: 1230 RQREHASVSTPFVQACFSNPGDCFIRAAKAGVVDDLQGSIDALAWGKIPAIGT-GQFDI 1287


>ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
            cacao] gi|508777356|gb|EOY24612.1| DNA-directed RNA
            polymerase II subunit RPB1-B, putative [Theobroma cacao]
          Length = 1484

 Score =  309 bits (792), Expect = 1e-81
 Identities = 159/234 (67%), Positives = 182/234 (77%), Gaps = 1/234 (0%)
 Frame = -3

Query: 699  CSSINMQKECSDIFYVTVMIVENSKSS-IELETIQKWLIPFLLRTVVKGFQEIKKVDILW 523
            CS I+M  E  D F +TV IVE SKSS +EL+ I+  +IP+LL  V+KGF EIKKVDILW
Sbjct: 1065 CSHIDMPNE-DDTFCITVTIVEYSKSSHMELDVIRDMVIPYLLEAVIKGFPEIKKVDILW 1123

Query: 522  KDKPRESKSLNDSFGELYLKVSMSRGCHRTSLWSALMNGCLQIMDMIDWTRSHPDKIRSF 343
            KD+ + SK    S GELYL+V +S     T LW  LMN CLQIMDMIDWTRSHPD I   
Sbjct: 1124 KDRLKVSKPHKSSCGELYLRVFVSGDFGITKLWGVLMNDCLQIMDMIDWTRSHPDNINQL 1183

Query: 342  CLVYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLAQQREH 163
            CL YGIDAG KFFLNNL+SA+SDT K IL EHL +VAN LSATGEFVGLN+KGL QQREH
Sbjct: 1184 CLAYGIDAGWKFFLNNLKSAISDTGKTILNEHLLVVANCLSATGEFVGLNSKGLRQQREH 1243

Query: 162  ASVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSIDALAWGKVPSVGTGGHFDI 1
            A VSSPF+QA FSNP ASF+KAAK GA D+LQG+IDALAWG++P +GTGG FDI
Sbjct: 1244 AYVSSPFMQACFSNPSASFVKAAKTGASDDLQGTIDALAWGRIPHIGTGGQFDI 1297


>ref|XP_012476048.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Gossypium raimondii]
          Length = 1340

 Score =  305 bits (781), Expect = 2e-80
 Identities = 154/240 (64%), Positives = 182/240 (75%)
 Frame = -3

Query: 720  MLISNEDCSSINMQKECSDIFYVTVMIVENSKSSIELETIQKWLIPFLLRTVVKGFQEIK 541
            M ++++ CS I+M+ E  D F +TV IVE   S IEL+ IQ  +IP LL  VVKGF EIK
Sbjct: 915  MQVTSKACSVIDMENE-DDTFCITVTIVECKTSRIELDVIQDMVIPSLLEAVVKGFPEIK 973

Query: 540  KVDILWKDKPRESKSLNDSFGELYLKVSMSRGCHRTSLWSALMNGCLQIMDMIDWTRSHP 361
            KV+ILW +  R   S   + GELYL+VS+S     T LWS LMN CLQ+MD+IDWTRSHP
Sbjct: 974  KVEILWNEDFRVPNSHKPAPGELYLRVSVSGDFGITKLWSVLMNDCLQLMDIIDWTRSHP 1033

Query: 360  DKIRSFCLVYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGL 181
            D I  FCL +GIDAG +FFLNN++SA+SDT K+IL EHLHL AN LSATGEFVGLN+KGL
Sbjct: 1034 DNINQFCLAFGIDAGWRFFLNNMKSAISDTGKSILNEHLHLAANCLSATGEFVGLNSKGL 1093

Query: 180  AQQREHASVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSIDALAWGKVPSVGTGGHFDI 1
             QQREHA VSSPF+QA FSNP A F+KAAK G  DNLQG+ID LAWG+VP +GTGG FDI
Sbjct: 1094 KQQREHAFVSSPFMQACFSNPSACFVKAAKTGVADNLQGTIDLLAWGRVPRIGTGGQFDI 1153


>gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium raimondii]
          Length = 1478

 Score =  305 bits (781), Expect = 2e-80
 Identities = 154/240 (64%), Positives = 182/240 (75%)
 Frame = -3

Query: 720  MLISNEDCSSINMQKECSDIFYVTVMIVENSKSSIELETIQKWLIPFLLRTVVKGFQEIK 541
            M ++++ CS I+M+ E  D F +TV IVE   S IEL+ IQ  +IP LL  VVKGF EIK
Sbjct: 1053 MQVTSKACSVIDMENE-DDTFCITVTIVECKTSRIELDVIQDMVIPSLLEAVVKGFPEIK 1111

Query: 540  KVDILWKDKPRESKSLNDSFGELYLKVSMSRGCHRTSLWSALMNGCLQIMDMIDWTRSHP 361
            KV+ILW +  R   S   + GELYL+VS+S     T LWS LMN CLQ+MD+IDWTRSHP
Sbjct: 1112 KVEILWNEDFRVPNSHKPAPGELYLRVSVSGDFGITKLWSVLMNDCLQLMDIIDWTRSHP 1171

Query: 360  DKIRSFCLVYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGL 181
            D I  FCL +GIDAG +FFLNN++SA+SDT K+IL EHLHL AN LSATGEFVGLN+KGL
Sbjct: 1172 DNINQFCLAFGIDAGWRFFLNNMKSAISDTGKSILNEHLHLAANCLSATGEFVGLNSKGL 1231

Query: 180  AQQREHASVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSIDALAWGKVPSVGTGGHFDI 1
             QQREHA VSSPF+QA FSNP A F+KAAK G  DNLQG+ID LAWG+VP +GTGG FDI
Sbjct: 1232 KQQREHAFVSSPFMQACFSNPSACFVKAAKTGVADNLQGTIDLLAWGRVPRIGTGGQFDI 1291


>ref|XP_012476045.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Gossypium raimondii] gi|823152441|ref|XP_012476046.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
            isoform X1 [Gossypium raimondii]
            gi|763758424|gb|KJB25755.1| hypothetical protein
            B456_004G207300 [Gossypium raimondii]
            gi|763758426|gb|KJB25757.1| hypothetical protein
            B456_004G207300 [Gossypium raimondii]
          Length = 1481

 Score =  305 bits (781), Expect = 2e-80
 Identities = 154/240 (64%), Positives = 182/240 (75%)
 Frame = -3

Query: 720  MLISNEDCSSINMQKECSDIFYVTVMIVENSKSSIELETIQKWLIPFLLRTVVKGFQEIK 541
            M ++++ CS I+M+ E  D F +TV IVE   S IEL+ IQ  +IP LL  VVKGF EIK
Sbjct: 1056 MQVTSKACSVIDMENE-DDTFCITVTIVECKTSRIELDVIQDMVIPSLLEAVVKGFPEIK 1114

Query: 540  KVDILWKDKPRESKSLNDSFGELYLKVSMSRGCHRTSLWSALMNGCLQIMDMIDWTRSHP 361
            KV+ILW +  R   S   + GELYL+VS+S     T LWS LMN CLQ+MD+IDWTRSHP
Sbjct: 1115 KVEILWNEDFRVPNSHKPAPGELYLRVSVSGDFGITKLWSVLMNDCLQLMDIIDWTRSHP 1174

Query: 360  DKIRSFCLVYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGL 181
            D I  FCL +GIDAG +FFLNN++SA+SDT K+IL EHLHL AN LSATGEFVGLN+KGL
Sbjct: 1175 DNINQFCLAFGIDAGWRFFLNNMKSAISDTGKSILNEHLHLAANCLSATGEFVGLNSKGL 1234

Query: 180  AQQREHASVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSIDALAWGKVPSVGTGGHFDI 1
             QQREHA VSSPF+QA FSNP A F+KAAK G  DNLQG+ID LAWG+VP +GTGG FDI
Sbjct: 1235 KQQREHAFVSSPFMQACFSNPSACFVKAAKTGVADNLQGTIDLLAWGRVPRIGTGGQFDI 1294


>ref|XP_012087018.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Jatropha curcas]
          Length = 1453

 Score =  303 bits (777), Expect = 6e-80
 Identities = 153/239 (64%), Positives = 187/239 (78%), Gaps = 1/239 (0%)
 Frame = -3

Query: 714  ISNEDCSSINMQKECSDIFYVTVMIVENSK-SSIELETIQKWLIPFLLRTVVKGFQEIKK 538
            I+ +DCS  +  +E  D   +TV ++E +K SSI+L+TI+  +IPFLL TV+KG  EI+K
Sbjct: 1036 ITCKDCSVADNHREIEDTLCITVTVIEKAKNSSIKLDTIRDLIIPFLLETVLKGLMEIEK 1095

Query: 537  VDILWKDKPRESKSLNDSFGELYLKVSMSRGCHRTSLWSALMNGCLQIMDMIDWTRSHPD 358
            VDILW ++PR  KS N S+GELYL+VSMS    +T LW+ L++ CL IMDMIDWTRSH D
Sbjct: 1096 VDILWNERPRIQKSHNRSYGELYLRVSMSGRSDKTRLWNLLVDHCLPIMDMIDWTRSHSD 1155

Query: 357  KIRSFCLVYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLA 178
             IR FCL YGIDAG +FFLNNL+SA+SD  K++LPEHL LVAN LS TGEFVGLNAKG  
Sbjct: 1156 NIRDFCLAYGIDAGWEFFLNNLKSAISDVGKSVLPEHLILVANCLSVTGEFVGLNAKGWK 1215

Query: 177  QQREHASVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSIDALAWGKVPSVGTGGHFDI 1
            +QREHASV SPFVQA FS+PG+ FIKAAK G +D+L+GS+DALAWGK P VGT G FDI
Sbjct: 1216 RQREHASVLSPFVQACFSSPGSCFIKAAKGGVMDDLRGSLDALAWGKTPPVGT-GQFDI 1273


>gb|KDP25521.1| hypothetical protein JCGZ_20677 [Jatropha curcas]
          Length = 942

 Score =  303 bits (777), Expect = 6e-80
 Identities = 153/239 (64%), Positives = 187/239 (78%), Gaps = 1/239 (0%)
 Frame = -3

Query: 714  ISNEDCSSINMQKECSDIFYVTVMIVENSK-SSIELETIQKWLIPFLLRTVVKGFQEIKK 538
            I+ +DCS  +  +E  D   +TV ++E +K SSI+L+TI+  +IPFLL TV+KG  EI+K
Sbjct: 525  ITCKDCSVADNHREIEDTLCITVTVIEKAKNSSIKLDTIRDLIIPFLLETVLKGLMEIEK 584

Query: 537  VDILWKDKPRESKSLNDSFGELYLKVSMSRGCHRTSLWSALMNGCLQIMDMIDWTRSHPD 358
            VDILW ++PR  KS N S+GELYL+VSMS    +T LW+ L++ CL IMDMIDWTRSH D
Sbjct: 585  VDILWNERPRIQKSHNRSYGELYLRVSMSGRSDKTRLWNLLVDHCLPIMDMIDWTRSHSD 644

Query: 357  KIRSFCLVYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLA 178
             IR FCL YGIDAG +FFLNNL+SA+SD  K++LPEHL LVAN LS TGEFVGLNAKG  
Sbjct: 645  NIRDFCLAYGIDAGWEFFLNNLKSAISDVGKSVLPEHLILVANCLSVTGEFVGLNAKGWK 704

Query: 177  QQREHASVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSIDALAWGKVPSVGTGGHFDI 1
            +QREHASV SPFVQA FS+PG+ FIKAAK G +D+L+GS+DALAWGK P VGT G FDI
Sbjct: 705  RQREHASVLSPFVQACFSSPGSCFIKAAKGGVMDDLRGSLDALAWGKTPPVGT-GQFDI 762


>ref|XP_007210915.1| hypothetical protein PRUPE_ppa000278mg [Prunus persica]
            gi|462406650|gb|EMJ12114.1| hypothetical protein
            PRUPE_ppa000278mg [Prunus persica]
          Length = 1356

 Score =  301 bits (771), Expect = 3e-79
 Identities = 151/241 (62%), Positives = 183/241 (75%), Gaps = 1/241 (0%)
 Frame = -3

Query: 720  MLISNEDCSSINMQKECSDIFYVTVMIVENSKSSIE-LETIQKWLIPFLLRTVVKGFQEI 544
            +LI+++ CS+        D F +TV + ENSK+S E L+  +  +IPFLL TVVKGF E+
Sbjct: 939  LLITSKGCSAAQTCNGDDDTFCITVTMPENSKNSSEQLDIARDLVIPFLLGTVVKGFLEV 998

Query: 543  KKVDILWKDKPRESKSLNDSFGELYLKVSMSRGCHRTSLWSALMNGCLQIMDMIDWTRSH 364
            KKVDILW D PRESK ++ S GELYL+VSMS    R  LWS LM+ CLQIMD+IDW+RSH
Sbjct: 999  KKVDILWNDHPRESKKIHGSSGELYLRVSMSGKTGRRRLWSMLMDNCLQIMDLIDWSRSH 1058

Query: 363  PDKIRSFCLVYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKG 184
            PD +  +C+ YGIDAG K+FLNNLE+A +D  K+ILP+HL LVA+ LSATGEFVGLNAKG
Sbjct: 1059 PDNVHDYCIAYGIDAGWKYFLNNLETAANDIGKDILPQHLILVADCLSATGEFVGLNAKG 1118

Query: 183  LAQQREHASVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSIDALAWGKVPSVGTGGHFD 4
            +AQQ+ H SVSSPFVQA FS+PGA FIKAAK G VD L GS++ALAWG  P  GTG  FD
Sbjct: 1119 IAQQKGHTSVSSPFVQACFSSPGACFIKAAKGGVVDELHGSVEALAWGNTPPSGTGRQFD 1178

Query: 3    I 1
            I
Sbjct: 1179 I 1179


>ref|XP_008238796.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase IV
            subunit 1 [Prunus mume]
          Length = 1452

 Score =  301 bits (770), Expect = 4e-79
 Identities = 151/241 (62%), Positives = 184/241 (76%), Gaps = 1/241 (0%)
 Frame = -3

Query: 720  MLISNEDCSSINMQKECSDIFYVTVMIVENSKSSIE-LETIQKWLIPFLLRTVVKGFQEI 544
            +LI+++ CS+        D F +TV + ENSK+S E L+  +  +IPFLL TVVKGF E+
Sbjct: 1032 LLITSKGCSAAQTCNGDDDTFCITVTMPENSKNSSEQLDIARDLVIPFLLGTVVKGFLEV 1091

Query: 543  KKVDILWKDKPRESKSLNDSFGELYLKVSMSRGCHRTSLWSALMNGCLQIMDMIDWTRSH 364
            KKVDILW D PRESK ++ S GELYL+VSMS    R  LWS LM+ CLQIM++IDW+RSH
Sbjct: 1092 KKVDILWNDHPRESKKIHGSSGELYLRVSMSGKTGRRRLWSMLMDNCLQIMNLIDWSRSH 1151

Query: 363  PDKIRSFCLVYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKG 184
            PD +  +C+ YGIDAG K+FLNNLE+A +D  K+ILP+HL LVA+ LSATGEFVGLNAKG
Sbjct: 1152 PDNVHDYCIAYGIDAGWKYFLNNLETAANDIGKDILPQHLILVADCLSATGEFVGLNAKG 1211

Query: 183  LAQQREHASVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSIDALAWGKVPSVGTGGHFD 4
            +AQQ+ HASVSSPFVQA FS+PGA FIKAAK G VD L GS++ALAWG  P  GTG  FD
Sbjct: 1212 IAQQKGHASVSSPFVQACFSSPGACFIKAAKGGVVDELHGSVEALAWGNTPPSGTGRQFD 1271

Query: 3    I 1
            I
Sbjct: 1272 I 1272


>ref|XP_003611164.2| DNA-directed RNA polymerase [Medicago truncatula]
            gi|657383868|gb|AES94122.2| DNA-directed RNA polymerase
            [Medicago truncatula]
          Length = 1519

 Score =  300 bits (767), Expect = 8e-79
 Identities = 146/232 (62%), Positives = 186/232 (80%)
 Frame = -3

Query: 696  SSINMQKECSDIFYVTVMIVENSKSSIELETIQKWLIPFLLRTVVKGFQEIKKVDILWKD 517
            +S+  +K+  D   +TV +VE+SK+S++L++++K LIPFLL+T +KGF EIKKVDILWKD
Sbjct: 1060 TSVGNEKDGEDC--ITVAVVEDSKNSVQLDSVRKSLIPFLLQTAIKGFLEIKKVDILWKD 1117

Query: 516  KPRESKSLNDSFGELYLKVSMSRGCHRTSLWSALMNGCLQIMDMIDWTRSHPDKIRSFCL 337
             P+ +KS N S GELYL+V+MS G    + W  L+N C +IM +IDWTRSHPD I  FC 
Sbjct: 1118 LPKVTKSYNGSAGELYLRVTMSSGNDNGTFWGRLINHCHRIMPLIDWTRSHPDNIHHFCS 1177

Query: 336  VYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLAQQREHAS 157
             +GIDAG + + +NL SA SDT K+ILP+HL LVANSLSA+GEFVGLNAKG+A+QR+HAS
Sbjct: 1178 AFGIDAGWQHYFHNLSSATSDTGKSILPKHLRLVANSLSASGEFVGLNAKGMARQRKHAS 1237

Query: 156  VSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSIDALAWGKVPSVGTGGHFDI 1
            VSSPFVQA FSNPG+SF+KAAK+G VDNLQG++DALAWG    +GTGG FDI
Sbjct: 1238 VSSPFVQACFSNPGSSFLKAAKSGIVDNLQGNLDALAWGNCLPMGTGGQFDI 1289


>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
            gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
            putative [Ricinus communis]
          Length = 1475

 Score =  296 bits (758), Expect = 9e-78
 Identities = 157/239 (65%), Positives = 179/239 (74%), Gaps = 1/239 (0%)
 Frame = -3

Query: 714  ISNEDCSSINMQKECSDIFYVTVMIVENSK-SSIELETIQKWLIPFLLRTVVKGFQEIKK 538
            IS + CS  +  +E  +   +TV IVE SK SS  L TIQ  +IPFLL TV+KG  EI K
Sbjct: 1033 ISCKSCSIADNHREKEETLCITVTIVERSKNSSTRLATIQDLMIPFLLETVLKGLMEINK 1092

Query: 537  VDILWKDKPRESKSLNDSFGELYLKVSMSRGCHRTSLWSALMNGCLQIMDMIDWTRSHPD 358
            VDILWKD PR SK+ N  +GELYL+VSMS    +T LW+ LM+ CL IMDMIDWT S PD
Sbjct: 1093 VDILWKDWPRISKTHNQPYGELYLRVSMSADSEKTRLWNLLMDYCLPIMDMIDWTCSRPD 1152

Query: 357  KIRSFCLVYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLA 178
             +R F L YGIDAG KFFL  LESA+SD  K++LPEH+ LVAN LS TGEFVGLNAKG  
Sbjct: 1153 NVRDFSLAYGIDAGWKFFLQRLESAISDVGKSVLPEHMLLVANCLSVTGEFVGLNAKGWK 1212

Query: 177  QQREHASVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSIDALAWGKVPSVGTGGHFDI 1
            +QRE ASVSSPFVQA FS+PG  FIKAAKAG  D+LQGS+DALAWGKVPSVGT G FDI
Sbjct: 1213 RQREDASVSSPFVQACFSSPGNCFIKAAKAGVKDDLQGSLDALAWGKVPSVGT-GQFDI 1270


>ref|XP_010108047.1| DNA-directed RNA polymerase D subunit 1 [Morus notabilis]
            gi|587930670|gb|EXC17779.1| DNA-directed RNA polymerase D
            subunit 1 [Morus notabilis]
          Length = 1410

 Score =  295 bits (756), Expect = 2e-77
 Identities = 148/238 (62%), Positives = 178/238 (74%)
 Frame = -3

Query: 714  ISNEDCSSINMQKECSDIFYVTVMIVENSKSSIELETIQKWLIPFLLRTVVKGFQEIKKV 535
            I ++DCS    ++E +D   +TV I  +  S I+L T+Q  LIPFLL T+VKGF+EI+KV
Sbjct: 978  IRSKDCSVPATREEDNDTCCITVSIECSKNSVIQLITVQDLLIPFLLETIVKGFREIEKV 1037

Query: 534  DILWKDKPRESKSLNDSFGELYLKVSMSRGCHRTSLWSALMNGCLQIMDMIDWTRSHPDK 355
            DILW D+   SK+  DS GELYLKVSMS      S WS LMN CL+IMD+IDW+RSHP+ 
Sbjct: 1038 DILWSDRSNTSKATRDSSGELYLKVSMSGDSGVKSYWSTLMNDCLRIMDLIDWSRSHPEN 1097

Query: 354  IRSFCLVYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLAQ 175
            +  FC VYGID+G KFFLNNLESAVSD  K ILPEHL LVAN+LS TG FVGL  KGLA+
Sbjct: 1098 VNEFCSVYGIDSGWKFFLNNLESAVSDVGKTILPEHLLLVANTLSVTGNFVGLTPKGLAR 1157

Query: 174  QREHASVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSIDALAWGKVPSVGTGGHFDI 1
            QREHASV++PF QA FSNP A FIKAAKA   D L G++DALAWG +P +GTGG F++
Sbjct: 1158 QREHASVATPFSQACFSNPAACFIKAAKAEVTDGLHGTLDALAWGNIPPLGTGGQFEL 1215


>ref|XP_002298071.2| hypothetical protein POPTR_0001s08650g [Populus trichocarpa]
            gi|550346847|gb|EEE82876.2| hypothetical protein
            POPTR_0001s08650g [Populus trichocarpa]
          Length = 1109

 Score =  293 bits (751), Expect = 6e-77
 Identities = 146/206 (70%), Positives = 167/206 (81%)
 Frame = -3

Query: 618  IELETIQKWLIPFLLRTVVKGFQEIKKVDILWKDKPRESKSLNDSFGELYLKVSMSRGCH 439
            I+ +TIQ  +IPFLL TV+KGF EI+KVDILW DKP+  KS N   GEL+L+V MSRG  
Sbjct: 820  IKCQTIQDLMIPFLLETVIKGFMEIQKVDILWNDKPKIPKSHNRLRGELFLRVHMSRGSD 879

Query: 438  RTSLWSALMNGCLQIMDMIDWTRSHPDKIRSFCLVYGIDAGIKFFLNNLESAVSDTSKNI 259
            +T LW+ LM+ CL IMD+IDW RSHPD I   CL YGIDAG KFFLNNL+SA+SD  K +
Sbjct: 880  KTRLWNQLMDDCLSIMDLIDWARSHPDNIHECCLAYGIDAGWKFFLNNLQSAMSDVGKTV 939

Query: 258  LPEHLHLVANSLSATGEFVGLNAKGLAQQREHASVSSPFVQAFFSNPGASFIKAAKAGAV 79
            LPEHL LVAN LS TGEFVGLNAKGL +QREHASVS+PFVQA FSNPG  FI+AAKAG V
Sbjct: 940  LPEHLLLVANCLSVTGEFVGLNAKGLKRQREHASVSTPFVQACFSNPGDCFIRAAKAGVV 999

Query: 78   DNLQGSIDALAWGKVPSVGTGGHFDI 1
            D+LQGSIDALAWGKVP++GT G FDI
Sbjct: 1000 DDLQGSIDALAWGKVPAIGT-GQFDI 1024


>ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2 [Vitis
            vinifera]
          Length = 1458

 Score =  293 bits (750), Expect = 8e-77
 Identities = 144/238 (60%), Positives = 182/238 (76%)
 Frame = -3

Query: 714  ISNEDCSSINMQKECSDIFYVTVMIVENSKSSIELETIQKWLIPFLLRTVVKGFQEIKKV 535
            I+++DC  ++M+KE SD F +TV IV + KS I+L+T++  +IPFLL  VVKG  ++KKV
Sbjct: 1036 ITSKDCF-VDMEKEDSDCFCITVSIVNSKKSCIQLDTVRDLVIPFLLGAVVKGLLDVKKV 1094

Query: 534  DILWKDKPRESKSLNDSFGELYLKVSMSRGCHRTSLWSALMNGCLQIMDMIDWTRSHPDK 355
            DILW D P +S  L  S G LYL+V +S  C + + W  LM+ CLQIMDMIDW RSHPD 
Sbjct: 1095 DILWNDNP-DSDVLKSSSGRLYLRVYVSGDCGKKNFWGVLMDACLQIMDMIDWERSHPDN 1153

Query: 354  IRSFCLVYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLAQ 175
            I    +VYGIDAG K+FLN+L+SA+SD  K +LPEHL LVA+ LSATGEFVGLNAKG+A+
Sbjct: 1154 IHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFVGLNAKGMAR 1213

Query: 174  QREHASVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSIDALAWGKVPSVGTGGHFDI 1
            Q+E  S+SSPF+Q  FS+PG+ FIKA K    DNL GS+DALAWGK+PSVG+GGHFDI
Sbjct: 1214 QKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGKIPSVGSGGHFDI 1271


>ref|XP_012488706.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Gossypium
            raimondii]
          Length = 1485

 Score =  292 bits (748), Expect = 1e-76
 Identities = 149/239 (62%), Positives = 181/239 (75%), Gaps = 1/239 (0%)
 Frame = -3

Query: 714  ISNEDCSSINMQKECSDIFYVTVMIVENSKSS-IELETIQKWLIPFLLRTVVKGFQEIKK 538
            ++++ CS  +M  +  D+F +TV IVE SK S IEL+ I   ++P LL  VVKGF EIKK
Sbjct: 1064 VTSKSCSHTDMPNK-DDMFCITVTIVEPSKRSHIELDVILAIVLPSLLEAVVKGFPEIKK 1122

Query: 537  VDILWKDKPRESKSLNDSFGELYLKVSMSRGCHRTSLWSALMNGCLQIMDMIDWTRSHPD 358
            V ILW D+ + SKS   S GELYL+V+++ G  +T LW  LMN CL IMD+IDWTRSHPD
Sbjct: 1123 VQILWNDRFKVSKSHKTSPGELYLRVAVTGGFGKTKLWGMLMNDCLPIMDLIDWTRSHPD 1182

Query: 357  KIRSFCLVYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLA 178
             I  FC  YGID+G KFFLNNL+SA+SDT K IL EHLHLVA+ LS TGEFVGLN+KGL 
Sbjct: 1183 DINQFCSAYGIDSGWKFFLNNLKSAISDTGKTILNEHLHLVADCLSVTGEFVGLNSKGLR 1242

Query: 177  QQREHASVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSIDALAWGKVPSVGTGGHFDI 1
             ++EHA VSSPF+QA FSNP ASF+KAAK G  DNLQG+IDAL+WG+VP +GTG  FDI
Sbjct: 1243 LRQEHAFVSSPFMQACFSNPSASFVKAAKKGVSDNLQGTIDALSWGRVPCIGTGAQFDI 1301