BLASTX nr result
ID: Zanthoxylum22_contig00029220
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zanthoxylum22_contig00029220
(485 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 114 3e-46
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 116 6e-45
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 109 1e-44
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 109 1e-44
ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotei... 105 9e-43
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 104 3e-42
dbj|BAA96887.1| copia-like retroelement pol polyprotein [Arabido... 100 8e-41
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 106 2e-40
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 106 2e-40
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707... 102 3e-40
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 99 3e-40
ref|XP_009107606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri... 100 4e-40
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ... 101 5e-40
emb|CAA20201.1| putative transposable element [Arabidopsis thali... 100 7e-40
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 105 1e-39
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 106 1e-39
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group... 102 1e-39
gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa... 100 1e-39
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 102 3e-39
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 99 3e-39
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 114 bits (284), Expect(2) = 3e-46
Identities = 50/86 (58%), Positives = 64/86 (74%)
Frame = -1
Query: 260 NXVAERMNRTLLEKIRCLLFSSELPRAFWGEALNTATHLVNRSPNSSVQFKTPEEIWSCR 81
N +AERMNRT+LE++RC+L SS L + FW EA TA HL+NRSP+S++QFKTP+E W+ +
Sbjct: 551 NGLAERMNRTILERVRCMLSSSGLSKVFWAEAAETAVHLINRSPSSALQFKTPQEKWTGK 610
Query: 80 TQKVAHLRVFGCEAYAHQSVGKLEPR 3
HL+VFGC AY H KLEPR
Sbjct: 611 AADYQHLKVFGCTAYVHTKTDKLEPR 636
Score = 98.2 bits (243), Expect(2) = 3e-46
Identities = 46/74 (62%), Positives = 59/74 (79%)
Frame = -3
Query: 483 LWGPAKV*THGGKKYFLSIIDDFSRKV*TFLLKSKDETLTKFKELKVLVENQTSNKVKVL 304
LWGP++V + GG +YFL++IDD+SRKV + LK+K ET KFKE K+LVE QTS KVK L
Sbjct: 457 LWGPSRVPSIGGARYFLTLIDDYSRKVWIYFLKNKSETFLKFKEWKILVETQTSRKVKKL 516
Query: 303 RTDNGLEFCNTEFD 262
RTDNGLEF + +F+
Sbjct: 517 RTDNGLEFLSNDFN 530
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 116 bits (291), Expect(2) = 6e-45
Identities = 52/86 (60%), Positives = 70/86 (81%)
Frame = -1
Query: 260 NXVAERMNRTLLEKIRCLLFSSELPRAFWGEALNTATHLVNRSPNSSVQFKTPEEIWSCR 81
N +AERMNRTL++K RC+L +S+LPR+FW EA+NTA++LVNRSP+S++ FKTPEE+W+ +
Sbjct: 583 NGLAERMNRTLVDKTRCMLINSKLPRSFWAEAVNTASYLVNRSPSSAIGFKTPEELWNGK 642
Query: 80 TQKVAHLRVFGCEAYAHQSVGKLEPR 3
+LRVFGC AY H + GKLE R
Sbjct: 643 PANYQNLRVFGCPAYLHINQGKLEAR 668
Score = 91.3 bits (225), Expect(2) = 6e-45
Identities = 43/74 (58%), Positives = 57/74 (77%)
Frame = -3
Query: 480 WGPAKV*THGGKKYFLSIIDDFSRKV*TFLLKSKDETLTKFKELKVLVENQTSNKVKVLR 301
WGPA+V + G +YF+S+IDD+SRKV ++LK KD+ L KFK K LVENQ+ K+K LR
Sbjct: 490 WGPAQVPSLSGGRYFMSLIDDYSRKVWIYILKIKDQALEKFKVWKSLVENQSDFKLKCLR 549
Query: 300 TDNGLEFCNTEFDQ 259
TDNGLEFC+ F++
Sbjct: 550 TDNGLEFCSKVFEE 563
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 109 bits (272), Expect(2) = 1e-44
Identities = 47/86 (54%), Positives = 66/86 (76%)
Frame = -1
Query: 260 NXVAERMNRTLLEKIRCLLFSSELPRAFWGEALNTATHLVNRSPNSSVQFKTPEEIWSCR 81
N VAERMN+TL+++ RC+ + L + FW EA+NTA +LVNRSP++++ FKTP+E+WS +
Sbjct: 905 NGVAERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVWSGK 964
Query: 80 TQKVAHLRVFGCEAYAHQSVGKLEPR 3
+ L++FGC AYAH S GKLEPR
Sbjct: 965 PSNYSGLKIFGCPAYAHVSDGKLEPR 990
Score = 97.8 bits (242), Expect(2) = 1e-44
Identities = 44/75 (58%), Positives = 56/75 (74%)
Frame = -3
Query: 483 LWGPAKV*THGGKKYFLSIIDDFSRKV*TFLLKSKDETLTKFKELKVLVENQTSNKVKVL 304
LWGP+ V +H G +Y+++ IDDFSRKV + LK+KDE KFKE K +VE +T VK L
Sbjct: 811 LWGPSPVESHSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTL 870
Query: 303 RTDNGLEFCNTEFDQ 259
RTDNGLEFCN +FD+
Sbjct: 871 RTDNGLEFCNKDFDE 885
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 109 bits (272), Expect(2) = 1e-44
Identities = 47/86 (54%), Positives = 66/86 (76%)
Frame = -1
Query: 260 NXVAERMNRTLLEKIRCLLFSSELPRAFWGEALNTATHLVNRSPNSSVQFKTPEEIWSCR 81
N VAERMN+TL+++ RC+ + L + FW EA+NTA +LVNRSP++++ FKTP+E+WS +
Sbjct: 692 NGVAERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVWSGK 751
Query: 80 TQKVAHLRVFGCEAYAHQSVGKLEPR 3
+ L++FGC AYAH S GKLEPR
Sbjct: 752 PSNYSGLKIFGCPAYAHVSDGKLEPR 777
Score = 97.8 bits (242), Expect(2) = 1e-44
Identities = 44/75 (58%), Positives = 56/75 (74%)
Frame = -3
Query: 483 LWGPAKV*THGGKKYFLSIIDDFSRKV*TFLLKSKDETLTKFKELKVLVENQTSNKVKVL 304
LWGP+ V +H G +Y+++ IDDFSRKV + LK+KDE KFKE K +VE +T VK L
Sbjct: 598 LWGPSPVESHSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTL 657
Query: 303 RTDNGLEFCNTEFDQ 259
RTDNGLEFCN +FD+
Sbjct: 658 RTDNGLEFCNKDFDE 672
>ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
1-94 [Erythranthe guttatus]
Length = 598
Score = 105 bits (261), Expect(2) = 9e-43
Identities = 47/74 (63%), Positives = 56/74 (75%)
Frame = -3
Query: 483 LWGPAKV*THGGKKYFLSIIDDFSRKV*TFLLKSKDETLTKFKELKVLVENQTSNKVKVL 304
+WGP V T+GG +YFLSIIDD+SRKV FLLK K + KFK K L+ENQT ++K L
Sbjct: 213 VWGPTSVPTYGGNRYFLSIIDDYSRKVFVFLLKQKSDVFDKFKTWKTLIENQTGKRIKTL 272
Query: 303 RTDNGLEFCNTEFD 262
RTDNG+EFCN EFD
Sbjct: 273 RTDNGIEFCNLEFD 286
Score = 95.5 bits (236), Expect(2) = 9e-43
Identities = 45/86 (52%), Positives = 60/86 (69%)
Frame = -1
Query: 260 NXVAERMNRTLLEKIRCLLFSSELPRAFWGEALNTATHLVNRSPNSSVQFKTPEEIWSCR 81
N VAERMNRTLLE++R +L SS LP+ FWGEA+ TAT+L+NRSP+ + PE +W +
Sbjct: 307 NGVAERMNRTLLERVRSMLTSSGLPKLFWGEAILTATYLINRSPSMPLNGDLPESVWCGK 366
Query: 80 TQKVAHLRVFGCEAYAHQSVGKLEPR 3
+++L VFG A+ H KLEPR
Sbjct: 367 KVDLSNLHVFGYAAFVHHKGDKLEPR 392
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 104 bits (259), Expect(2) = 3e-42
Identities = 47/86 (54%), Positives = 64/86 (74%)
Frame = -1
Query: 260 NXVAERMNRTLLEKIRCLLFSSELPRAFWGEALNTATHLVNRSPNSSVQFKTPEEIWSCR 81
N VAERMN+TLLE+ RC+L ++ L R FW EA++TA +L+NR P++ +Q KTP E+WS +
Sbjct: 571 NGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGK 630
Query: 80 TQKVAHLRVFGCEAYAHQSVGKLEPR 3
++L+ FGC AY H S GKLEPR
Sbjct: 631 AADYSNLKAFGCTAYYHVSEGKLEPR 656
Score = 94.7 bits (234), Expect(2) = 3e-42
Identities = 43/74 (58%), Positives = 56/74 (75%)
Frame = -3
Query: 480 WGPAKV*THGGKKYFLSIIDDFSRKV*TFLLKSKDETLTKFKELKVLVENQTSNKVKVLR 301
WGP +V + GG ++F+SIIDD+SR +++K K E KFKE K+L+ENQT K+K LR
Sbjct: 478 WGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLR 537
Query: 300 TDNGLEFCNTEFDQ 259
TDNGLEFC +EFDQ
Sbjct: 538 TDNGLEFCWSEFDQ 551
>dbj|BAA96887.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1140
Score = 99.8 bits (247), Expect(2) = 8e-41
Identities = 49/86 (56%), Positives = 57/86 (66%)
Frame = -1
Query: 260 NXVAERMNRTLLEKIRCLLFSSELPRAFWGEALNTATHLVNRSPNSSVQFKTPEEIWSCR 81
N VAERMNRTL+EK+RCLL S L +FW EA +T +LVNRSP S V PEE+W +
Sbjct: 575 NGVAERMNRTLMEKVRCLLNESGLDESFWAEAASTTAYLVNRSPASVVDHNVPEELWLGK 634
Query: 80 TQKVAHLRVFGCEAYAHQSVGKLEPR 3
HLR FG AY HQ GKL+PR
Sbjct: 635 KPGYKHLRRFGSIAYVHQDQGKLKPR 660
Score = 94.4 bits (233), Expect(2) = 8e-41
Identities = 51/82 (62%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = -3
Query: 483 LWG-PAKV*THGGKKYFLSIIDDFSRKV*TFLLKSKDETLTKFKELKVLVENQTSNKVKV 307
LWG P + GK+YFLSIIDD +RKV LK+KDET KF E K LVENQ + K+KV
Sbjct: 480 LWGSPNVTPSLSGKQYFLSIIDDKTRKVWLMFLKTKDETFDKFCEWKELVENQVNKKIKV 539
Query: 306 LRTDNGLEFCNTEFDQXSCGKN 241
LRTDNGLEFCN +FD+ C KN
Sbjct: 540 LRTDNGLEFCNLKFDEY-CKKN 560
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 106 bits (264), Expect(2) = 2e-40
Identities = 49/86 (56%), Positives = 63/86 (73%)
Frame = -1
Query: 260 NXVAERMNRTLLEKIRCLLFSSELPRAFWGEALNTATHLVNRSPNSSVQFKTPEEIWSCR 81
N VAERMNRT++ K RCLL ++ LP+ FW EA++TA +L+NRSP+ ++ KTP E+WS
Sbjct: 800 NGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGS 859
Query: 80 TQKVAHLRVFGCEAYAHQSVGKLEPR 3
+ LRVFGC AYAH GKLEPR
Sbjct: 860 PANYSDLRVFGCTAYAHVDNGKLEPR 885
Score = 86.3 bits (212), Expect(2) = 2e-40
Identities = 39/73 (53%), Positives = 52/73 (71%)
Frame = -3
Query: 483 LWGPAKV*THGGKKYFLSIIDDFSRKV*TFLLKSKDETLTKFKELKVLVENQTSNKVKVL 304
LWGPA+ + GG +Y ++I+DD+SRKV + LK K + FKE K +VE QT KVK+L
Sbjct: 706 LWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKIL 765
Query: 303 RTDNGLEFCNTEF 265
RTDNG+EFC+ F
Sbjct: 766 RTDNGMEFCSKIF 778
>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
Japonica Group]
Length = 1601
Score = 106 bits (264), Expect(2) = 2e-40
Identities = 49/86 (56%), Positives = 63/86 (73%)
Frame = -1
Query: 260 NXVAERMNRTLLEKIRCLLFSSELPRAFWGEALNTATHLVNRSPNSSVQFKTPEEIWSCR 81
N VAERMNRT++ K RCLL ++ LP+ FW EA++TA +L+NRSP+ ++ KTP E+WS
Sbjct: 593 NGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGS 652
Query: 80 TQKVAHLRVFGCEAYAHQSVGKLEPR 3
+ LRVFGC AYAH GKLEPR
Sbjct: 653 PANYSDLRVFGCTAYAHVDNGKLEPR 678
Score = 86.3 bits (212), Expect(2) = 2e-40
Identities = 39/73 (53%), Positives = 52/73 (71%)
Frame = -3
Query: 483 LWGPAKV*THGGKKYFLSIIDDFSRKV*TFLLKSKDETLTKFKELKVLVENQTSNKVKVL 304
LWGPA+ + GG +Y ++I+DD+SRKV + LK K + FKE K +VE QT KVK+L
Sbjct: 499 LWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKIL 558
Query: 303 RTDNGLEFCNTEF 265
RTDNG+EFC+ F
Sbjct: 559 RTDNGMEFCSKIF 571
>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
Length = 1773
Score = 102 bits (254), Expect(2) = 3e-40
Identities = 47/86 (54%), Positives = 61/86 (70%)
Frame = -1
Query: 260 NXVAERMNRTLLEKIRCLLFSSELPRAFWGEALNTATHLVNRSPNSSVQFKTPEEIWSCR 81
N V ERMNRT++ K RC+L ++ LPR FW EA +TA +L+NRSP+ ++ KTP E+WS
Sbjct: 532 NGVVERMNRTIISKARCMLSNAGLPRRFWAEAASTACYLINRSPSYAIDKKTPIEMWSGS 591
Query: 80 TQKVAHLRVFGCEAYAHQSVGKLEPR 3
+ L+VFGC AYAH GKLEPR
Sbjct: 592 PANYSDLKVFGCTAYAHVDNGKLEPR 617
Score = 89.7 bits (221), Expect(2) = 3e-40
Identities = 41/73 (56%), Positives = 53/73 (72%)
Frame = -3
Query: 483 LWGPAKV*THGGKKYFLSIIDDFSRKV*TFLLKSKDETLTKFKELKVLVENQTSNKVKVL 304
LWGPA+ + GG +Y ++I+DD+SRKV + LK K E FKE K +VE QT KVKVL
Sbjct: 438 LWGPARKRSFGGARYMMTIVDDYSRKVWPYFLKHKFEAFLVFKEWKTMVERQTERKVKVL 497
Query: 303 RTDNGLEFCNTEF 265
RTDNG+EFC+ +F
Sbjct: 498 RTDNGMEFCSRQF 510
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 99.4 bits (246), Expect(2) = 3e-40
Identities = 47/86 (54%), Positives = 57/86 (66%)
Frame = -1
Query: 260 NXVAERMNRTLLEKIRCLLFSSELPRAFWGEALNTATHLVNRSPNSSVQFKTPEEIWSCR 81
N VAERMNRT++EK+RCLL S + FW EA TA +L+NRSP S++ PEE+W R
Sbjct: 598 NGVAERMNRTIMEKVRCLLNKSGVEEVFWAEAAATAAYLINRSPASAINHNVPEEMWLNR 657
Query: 80 TQKVAHLRVFGCEAYAHQSVGKLEPR 3
HLR FG AY HQ GKL+PR
Sbjct: 658 KPGYKHLRKFGSIAYVHQDQGKLKPR 683
Score = 92.8 bits (229), Expect(2) = 3e-40
Identities = 49/75 (65%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Frame = -3
Query: 483 LWG-PAKV*THGGKKYFLSIIDDFSRKV*TFLLKSKDETLTKFKELKVLVENQTSNKVKV 307
LWG P + GK+YFLSIIDD +RKV + LKSKDET KF E K LVENQ + KVK
Sbjct: 503 LWGSPNVTPSISGKQYFLSIIDDKTRKVWLYFLKSKDETFDKFCEWKSLVENQVNKKVKC 562
Query: 306 LRTDNGLEFCNTEFD 262
LRTDNGLEFCN+ FD
Sbjct: 563 LRTDNGLEFCNSRFD 577
>ref|XP_009107606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC103833265 [Brassica rapa]
Length = 3353
Score = 100 bits (250), Expect(2) = 4e-40
Identities = 44/86 (51%), Positives = 62/86 (72%)
Frame = -1
Query: 260 NXVAERMNRTLLEKIRCLLFSSELPRAFWGEALNTATHLVNRSPNSSVQFKTPEEIWSCR 81
N V+ERMNRT+++K+R +L + L + FW EA +TA +L+NR+PNS++ FK PEE+WS
Sbjct: 512 NGVSERMNRTIMDKVRSMLAETGLGQEFWAEATSTAVYLINRTPNSTIDFKLPEEVWSGN 571
Query: 80 TQKVAHLRVFGCEAYAHQSVGKLEPR 3
++HLR FGC AY H S K +PR
Sbjct: 572 RPDLSHLRRFGCTAYVHVSQEKTKPR 597
Score = 100 bits (250), Expect(2) = 4e-40
Identities = 44/86 (51%), Positives = 62/86 (72%)
Frame = -1
Query: 260 NXVAERMNRTLLEKIRCLLFSSELPRAFWGEALNTATHLVNRSPNSSVQFKTPEEIWSCR 81
N V+ERMNRT+++K+R +L + L + FW EA +TA +L+NR+PNS++ FK PEE+WS
Sbjct: 2587 NGVSERMNRTIMDKVRSMLAETGLGQEFWAEATSTAVYLINRTPNSTIDFKLPEEVWSGN 2646
Query: 80 TQKVAHLRVFGCEAYAHQSVGKLEPR 3
++HLR FGC AY H S K +PR
Sbjct: 2647 RPDLSHLRRFGCTAYVHVSQEKTKPR 2672
Score = 90.9 bits (224), Expect(2) = 4e-40
Identities = 44/76 (57%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Frame = -3
Query: 483 LWG-PAKV*THGGKKYFLSIIDDFSRKV*TFLLKSKDETLTKFKELKVLVENQTSNKVKV 307
LWG P+ + GG KYF+S IDDFS+KV + L++KDE +KFKE K VE+ T K+K
Sbjct: 417 LWGSPSTPGSLGGCKYFISFIDDFSKKVWVYFLQTKDEAFSKFKEWKEAVESHTEKKIKC 476
Query: 306 LRTDNGLEFCNTEFDQ 259
LRTDNGLEFCN FD+
Sbjct: 477 LRTDNGLEFCNNRFDE 492
Score = 90.9 bits (224), Expect(2) = 4e-40
Identities = 44/76 (57%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Frame = -3
Query: 483 LWG-PAKV*THGGKKYFLSIIDDFSRKV*TFLLKSKDETLTKFKELKVLVENQTSNKVKV 307
LWG P+ + GG KYF+S IDDFS+KV + L++KDE +KFKE K VE+ T K+K
Sbjct: 2492 LWGSPSTPGSLGGCKYFISFIDDFSKKVWVYFLQTKDEAFSKFKEWKEAVESHTEKKIKC 2551
Query: 306 LRTDNGLEFCNTEFDQ 259
LRTDNGLEFCN FD+
Sbjct: 2552 LRTDNGLEFCNNRFDE 2567
Score = 78.2 bits (191), Expect = 2e-12
Identities = 42/101 (41%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Frame = -1
Query: 299 LIMA*NFVILSLINXVAERMN--RTLLEKIRCLLFSSELPRAFWGEALNTATHLVNRSPN 126
L +A N V VA + + R ++ + CLL + FW EA +TA +L+NR+PN
Sbjct: 1202 LALAKNRVFHERTKHVANKYHFIRDIVAQETCLL------QEFWAEATSTAVYLINRTPN 1255
Query: 125 SSVQFKTPEEIWSCRTQKVAHLRVFGCEAYAHQSVGKLEPR 3
S++ FK PEE+WS ++HLR FGC AY H S K +PR
Sbjct: 1256 STIDFKLPEEVWSGNRPDLSHLRRFGCTAYVHVSQEKTKPR 1296
>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
gi|108708632|gb|ABF96427.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1326
Score = 101 bits (252), Expect(2) = 5e-40
Identities = 47/86 (54%), Positives = 60/86 (69%)
Frame = -1
Query: 260 NXVAERMNRTLLEKIRCLLFSSELPRAFWGEALNTATHLVNRSPNSSVQFKTPEEIWSCR 81
N VAERMNRT++ K RC+L ++ + + FW EA NTA +L+NRSP+ + KTP E+WS
Sbjct: 586 NGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEVWSGM 645
Query: 80 TQKVAHLRVFGCEAYAHQSVGKLEPR 3
+ LRVFGC AYAH GKLEPR
Sbjct: 646 PADYSQLRVFGCTAYAHVDNGKLEPR 671
Score = 89.7 bits (221), Expect(2) = 5e-40
Identities = 43/74 (58%), Positives = 53/74 (71%)
Frame = -3
Query: 483 LWGPAKV*THGGKKYFLSIIDDFSRKV*TFLLKSKDETLTKFKELKVLVENQTSNKVKVL 304
LWGP++ GG +Y L+IIDD+SRKV + LK KD+T FKE KV +E QT +VKVL
Sbjct: 492 LWGPSRKAYLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVRIERQTEKEVKVL 551
Query: 303 RTDNGLEFCNTEFD 262
RTDNG EFC+ FD
Sbjct: 552 RTDNGGEFCSDAFD 565
>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
gi|7268932|emb|CAB79135.1| putative transposable element
[Arabidopsis thaliana]
Length = 1308
Score = 100 bits (249), Expect(2) = 7e-40
Identities = 49/86 (56%), Positives = 57/86 (66%)
Frame = -1
Query: 260 NXVAERMNRTLLEKIRCLLFSSELPRAFWGEALNTATHLVNRSPNSSVQFKTPEEIWSCR 81
N VA+RMNRTL+EK+RCLL S L FW EA TA +LVNRSP S+V PEE+W +
Sbjct: 589 NGVAKRMNRTLMEKVRCLLNESGLEEVFWAEAAATAAYLVNRSPASAVDHNVPEELWLDK 648
Query: 80 TQKVAHLRVFGCEAYAHQSVGKLEPR 3
HLR FGC AY H GKL+PR
Sbjct: 649 KPGYKHLRRFGCIAYVHLDQGKLKPR 674
Score = 90.5 bits (223), Expect(2) = 7e-40
Identities = 46/70 (65%), Positives = 54/70 (77%)
Frame = -3
Query: 450 GKKYFLSIIDDFSRKV*TFLLKSKDETLTKFKELKVLVENQTSNKVKVLRTDNGLEFCNT 271
GK+YFLSIIDD SRKV LK+KDET +F E K LVENQ + KVK+LRTDNGLEFCN
Sbjct: 506 GKQYFLSIIDDKSRKVWLMFLKTKDETFERFCEWKELVENQVNKKVKILRTDNGLEFCNL 565
Query: 270 EFDQXSCGKN 241
+FD+ C +N
Sbjct: 566 KFDEF-CKQN 574
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 105 bits (261), Expect(2) = 1e-39
Identities = 48/86 (55%), Positives = 62/86 (72%)
Frame = -1
Query: 260 NXVAERMNRTLLEKIRCLLFSSELPRAFWGEALNTATHLVNRSPNSSVQFKTPEEIWSCR 81
N VAERMNRT++ K RC+L ++ LP+ FW EA++TA +L+NRSP ++ KTP E+WS
Sbjct: 565 NDVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPIEVWSGS 624
Query: 80 TQKVAHLRVFGCEAYAHQSVGKLEPR 3
+ LRVFGC AYAH GKLEPR
Sbjct: 625 PTNYSDLRVFGCTAYAHVDNGKLEPR 650
Score = 85.1 bits (209), Expect(2) = 1e-39
Identities = 39/73 (53%), Positives = 51/73 (69%)
Frame = -3
Query: 483 LWGPAKV*THGGKKYFLSIIDDFSRKV*TFLLKSKDETLTKFKELKVLVENQTSNKVKVL 304
LWGPA + GG +Y ++I+DD+SRKV + LK K + FKE K +VE QT KVK+L
Sbjct: 471 LWGPAHKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDGFKEWKTMVERQTERKVKIL 530
Query: 303 RTDNGLEFCNTEF 265
RTDNG+EFC+ F
Sbjct: 531 RTDNGMEFCSKIF 543
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 106 bits (264), Expect(2) = 1e-39
Identities = 48/86 (55%), Positives = 63/86 (73%)
Frame = -1
Query: 260 NXVAERMNRTLLEKIRCLLFSSELPRAFWGEALNTATHLVNRSPNSSVQFKTPEEIWSCR 81
N VAERMNRT++ K RC+L ++ LP+ FW EA++TA +L+NRSP+ ++ KTP E+WS
Sbjct: 502 NGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGS 561
Query: 80 TQKVAHLRVFGCEAYAHQSVGKLEPR 3
+ LRVFGC AYAH GKLEPR
Sbjct: 562 PANYSDLRVFGCTAYAHVDNGKLEPR 587
Score = 84.0 bits (206), Expect(2) = 1e-39
Identities = 38/73 (52%), Positives = 51/73 (69%)
Frame = -3
Query: 483 LWGPAKV*THGGKKYFLSIIDDFSRKV*TFLLKSKDETLTKFKELKVLVENQTSNKVKVL 304
LWGPA+ + GG +Y ++I+DD+SRKV + LK K + FKE K +VE QT KVK+L
Sbjct: 408 LWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKIL 467
Query: 303 RTDNGLEFCNTEF 265
RTDNG+E C+ F
Sbjct: 468 RTDNGMELCSKIF 480
>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1175
Score = 102 bits (253), Expect(2) = 1e-39
Identities = 47/86 (54%), Positives = 61/86 (70%)
Frame = -1
Query: 260 NXVAERMNRTLLEKIRCLLFSSELPRAFWGEALNTATHLVNRSPNSSVQFKTPEEIWSCR 81
N VAERMNRT++ K RC+L ++ + + FW EA TA +L+NRSP+ S+ KTP E+WS
Sbjct: 481 NGVAERMNRTIISKARCMLSNARMNKRFWAEAAKTACYLINRSPSISLNKKTPIEVWSGM 540
Query: 80 TQKVAHLRVFGCEAYAHQSVGKLEPR 3
+ LRVFGC AYAH + GKLEPR
Sbjct: 541 PANYSQLRVFGCTAYAHVNNGKLEPR 566
Score = 88.2 bits (217), Expect(2) = 1e-39
Identities = 41/74 (55%), Positives = 54/74 (72%)
Frame = -3
Query: 483 LWGPAKV*THGGKKYFLSIIDDFSRKV*TFLLKSKDETLTKFKELKVLVENQTSNKVKVL 304
LWGP++ + GG +Y L+IIDD+SRKV + LK KD+T FKE KV+++ QT +VKVL
Sbjct: 387 LWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIKRQTEKEVKVL 446
Query: 303 RTDNGLEFCNTEFD 262
RTDNG FC+ FD
Sbjct: 447 RTDNGGGFCSDAFD 460
>gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa Japonica Group]
gi|18542925|gb|AAL75759.1| Putative pol polyprotein
[Oryza sativa Japonica Group] gi|31429763|gb|AAP51772.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1005
Score = 100 bits (249), Expect(2) = 1e-39
Identities = 46/86 (53%), Positives = 60/86 (69%)
Frame = -1
Query: 260 NXVAERMNRTLLEKIRCLLFSSELPRAFWGEALNTATHLVNRSPNSSVQFKTPEEIWSCR 81
N VAERMNRT++ K C+L ++ + + FW EA NTA +L+NRSP+ + KTP E+WS
Sbjct: 323 NGVAERMNRTIISKAHCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEVWSGM 382
Query: 80 TQKVAHLRVFGCEAYAHQSVGKLEPR 3
+ + LRVFGC AYAH GKLEPR
Sbjct: 383 SADYSQLRVFGCTAYAHVDNGKLEPR 408
Score = 89.7 bits (221), Expect(2) = 1e-39
Identities = 43/74 (58%), Positives = 53/74 (71%)
Frame = -3
Query: 483 LWGPAKV*THGGKKYFLSIIDDFSRKV*TFLLKSKDETLTKFKELKVLVENQTSNKVKVL 304
LWGP+ + GG +Y L+IIDD SRKV + LK KD+T FKE KV++E QT +VKVL
Sbjct: 229 LWGPSHKPSLGGARYMLTIIDDHSRKVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVL 288
Query: 303 RTDNGLEFCNTEFD 262
RTDNG EFC+ FD
Sbjct: 289 RTDNGGEFCSDAFD 302
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 102 bits (253), Expect(2) = 3e-39
Identities = 48/86 (55%), Positives = 60/86 (69%)
Frame = -1
Query: 260 NXVAERMNRTLLEKIRCLLFSSELPRAFWGEALNTATHLVNRSPNSSVQFKTPEEIWSCR 81
N VAERMNRT++ K RC+L ++ + + FW EA NTA +L+NRSP+ + KTP EIWS
Sbjct: 586 NGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGM 645
Query: 80 TQKVAHLRVFGCEAYAHQSVGKLEPR 3
+ LRVFGC AYAH GKLEPR
Sbjct: 646 PADYSQLRVFGCTAYAHVDNGKLEPR 671
Score = 87.0 bits (214), Expect(2) = 3e-39
Identities = 41/74 (55%), Positives = 53/74 (71%)
Frame = -3
Query: 483 LWGPAKV*THGGKKYFLSIIDDFSRKV*TFLLKSKDETLTKFKELKVLVENQTSNKVKVL 304
LWGP++ + GG +Y L+IIDD+SRK + LK KD+T FKE KV++E QT +VKVL
Sbjct: 492 LWGPSRKPSLGGARYMLTIIDDYSRKEWPYFLKHKDDTFAAFKERKVMIERQTEKEVKVL 551
Query: 303 RTDNGLEFCNTEFD 262
TDNG EFC+ FD
Sbjct: 552 CTDNGGEFCSDAFD 565
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 99.0 bits (245), Expect(2) = 3e-39
Identities = 47/86 (54%), Positives = 59/86 (68%)
Frame = -1
Query: 260 NXVAERMNRTLLEKIRCLLFSSELPRAFWGEALNTATHLVNRSPNSSVQFKTPEEIWSCR 81
N VAERMNRT++ K RC+L ++ + + FW EA NTA +L+NRSP+ + KTP EIWS
Sbjct: 586 NGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGM 645
Query: 80 TQKVAHLRVFGCEAYAHQSVGKLEPR 3
+ LRVFGC AYAH KLEPR
Sbjct: 646 PADYSQLRVFGCTAYAHVDNEKLEPR 671
Score = 90.1 bits (222), Expect(2) = 3e-39
Identities = 42/74 (56%), Positives = 54/74 (72%)
Frame = -3
Query: 483 LWGPAKV*THGGKKYFLSIIDDFSRKV*TFLLKSKDETLTKFKELKVLVENQTSNKVKVL 304
LWGP++ + GG +Y L+IIDD+SRKV + LK KD+T FKE KV++E QT +VKVL
Sbjct: 492 LWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVL 551
Query: 303 RTDNGLEFCNTEFD 262
RTDN EFC+ FD
Sbjct: 552 RTDNAGEFCSDAFD 565