BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zanthoxylum22_contig00017709
         (1660 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006465692.1| PREDICTED: RNA polymerase II-associated fact...   801   0.0  
ref|XP_006426877.1| hypothetical protein CICLE_v10025066mg [Citr...   799   0.0  
ref|XP_006465693.1| PREDICTED: RNA polymerase II-associated fact...   792   0.0  
gb|KDO51788.1| hypothetical protein CISIN_1g005794mg [Citrus sin...   790   0.0  
ref|XP_006426878.1| hypothetical protein CICLE_v10025066mg [Citr...   750   0.0  
ref|XP_007024308.1| Hydroxyproline-rich glycoprotein family prot...   657   0.0  
ref|XP_007024307.1| Hydroxyproline-rich glycoprotein family prot...   657   0.0  
ref|XP_010098144.1| hypothetical protein L484_026278 [Morus nota...   639   e-180
ref|XP_012484868.1| PREDICTED: RNA polymerase II-associated fact...   639   e-180
ref|XP_002278075.3| PREDICTED: RNA polymerase II-associated fact...   635   e-179
ref|XP_007217663.1| hypothetical protein PRUPE_ppa002145mg [Prun...   632   e-178
ref|XP_012470138.1| PREDICTED: RNA polymerase II-associated fact...   632   e-178
ref|XP_008462415.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera...   629   e-177
ref|XP_008222683.1| PREDICTED: RNA polymerase II-associated fact...   628   e-177
ref|XP_004141783.1| PREDICTED: RNA polymerase II-associated fact...   628   e-177
gb|KHF99389.1| RNA polymerase II-associated factor 1 [Gossypium ...   627   e-176
ref|XP_008228451.1| PREDICTED: bromodomain-containing protein 4 ...   626   e-176
ref|XP_006583048.1| PREDICTED: RNA polymerase II-associated fact...   625   e-176
ref|XP_009353546.1| PREDICTED: RNA polymerase II-associated fact...   622   e-175
ref|XP_014516734.1| PREDICTED: protein PAF1 homolog [Vigna radia...   621   e-175

>ref|XP_006465692.1| PREDICTED: RNA polymerase II-associated factor 1 homolog isoform X1
            [Citrus sinensis]
          Length = 576

 Score =  801 bits (2068), Expect = 0.0
 Identities = 414/533 (77%), Positives = 435/533 (81%), Gaps = 12/533 (2%)
 Frame = -1

Query: 1660 PPPGVTKDAEGRDFGLSDRDKRVSKEVSRRDHGHSKQQRPPVPPPGVTKVNGGSGMVXXX 1481
            PPP   KD EGRD G SD DKR SKEVSR D GHSKQ RPPVPPPGV KVNGGSG V   
Sbjct: 44   PPPPPPKDVEGRDTGTSDHDKRASKEVSRHDPGHSKQHRPPVPPPGVKKVNGGSGRVETE 103

Query: 1480 XXXXXXXXXXXXXXRQEEKHRQQIKESQNVVMQKSQMMASGKGGHGSMIGSRMGDRRAAP 1301
                          RQEEKHR Q+KESQNVVMQKSQM+ASGKGGHGSM GSRMGDRRAAP
Sbjct: 104  EERRVRKKREYEKHRQEEKHRLQMKESQNVVMQKSQMVASGKGGHGSMAGSRMGDRRAAP 163

Query: 1300 LLSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRFTRYTITSLEKNYKP 1121
            LLSGERIENRLKKPTTFLCKLKFRNELP+PSAQPKLMALKKDKDRFTRYT +SLEKNYKP
Sbjct: 164  LLSGERIENRLKKPTTFLCKLKFRNELPEPSAQPKLMALKKDKDRFTRYTFSSLEKNYKP 223

Query: 1120 QLHVEXXXXXXXXXXXLSVYNPPNARQXXXXXXXXXXXXXEVVTPVKKDGIKRKERPTDE 941
            QLHVE           LSVYNPP+ R              EVVTPVKKDGIKRKERPTD+
Sbjct: 224  QLHVEPDLGIPLDLLDLSVYNPPSVRPPLDPEDEELLRDDEVVTPVKKDGIKRKERPTDK 283

Query: 940  GVSWLVKTQYISPLSMESTRQSLTEKQAKELREMKGGRNILENLNDRERQIKDIEASFGA 761
            GVSWLVKTQYISPLSMES RQSLTEKQAKELREMKGGR+ILENLNDRERQIK+IEASF A
Sbjct: 284  GVSWLVKTQYISPLSMESARQSLTEKQAKELREMKGGRSILENLNDRERQIKEIEASFEA 343

Query: 760  CKLRPIHATNKNLQPVEIMPLLPDFERYDDQFVVASFDGAPTADSEIFSKMDKSVRDAHE 581
            CKLRPIHATNKNLQPVEI+PLLPDFERYDDQFV A+FDGAPTADSEI+SKMDKSVRDAHE
Sbjct: 344  CKLRPIHATNKNLQPVEILPLLPDFERYDDQFVAATFDGAPTADSEIYSKMDKSVRDAHE 403

Query: 580  SQAIVKSFVATGLDPANPEKFLAYMVPSVNELSKDIYNENEDVLFSWVREYHWDVRGDDA 401
            S+AI+KS+VATG D ANPEKFLAYMVPSVNELSKD+Y+ENEDV FSWVREYHWDVRGDDA
Sbjct: 404  SRAIMKSYVATGSDSANPEKFLAYMVPSVNELSKDMYDENEDVSFSWVREYHWDVRGDDA 463

Query: 400  ------------XXARYVPLPTKLNLRKKRAIEGRSSDEVEHFPIPSSITVRRRANVAAI 257
                          ARYVPLPTKLNLRKKRAIEGRS+DEVEHFPIPSSI VRRRANV AI
Sbjct: 464  DDPTTYLVSFDDDEARYVPLPTKLNLRKKRAIEGRSNDEVEHFPIPSSIAVRRRANVTAI 523

Query: 256  ELKEPGAYXXXXXXXXXXKTGMLDSQDGIERSHGGLRHQEPYQSSGEEDDMYD 98
            ELKE GAY          K G +DSQ+ +ERSH G RHQ+PYQSSG EDDMYD
Sbjct: 524  ELKEQGAYSNSKGNSSSSKMGRVDSQEDLERSHNGSRHQDPYQSSGAEDDMYD 576


>ref|XP_006426877.1| hypothetical protein CICLE_v10025066mg [Citrus clementina]
            gi|557528867|gb|ESR40117.1| hypothetical protein
            CICLE_v10025066mg [Citrus clementina]
            gi|641832760|gb|KDO51787.1| hypothetical protein
            CISIN_1g005794mg [Citrus sinensis]
          Length = 677

 Score =  799 bits (2064), Expect = 0.0
 Identities = 413/533 (77%), Positives = 435/533 (81%), Gaps = 12/533 (2%)
 Frame = -1

Query: 1660 PPPGVTKDAEGRDFGLSDRDKRVSKEVSRRDHGHSKQQRPPVPPPGVTKVNGGSGMVXXX 1481
            PPP   KD EGRD G SDRDKR SKEVSR D GHSKQ RPPVPPPGV KVNGGSG V   
Sbjct: 145  PPPPPPKDVEGRDTGTSDRDKRASKEVSRHDPGHSKQHRPPVPPPGVKKVNGGSGRVETE 204

Query: 1480 XXXXXXXXXXXXXXRQEEKHRQQIKESQNVVMQKSQMMASGKGGHGSMIGSRMGDRRAAP 1301
                          RQEEKHR Q+KESQNVVMQKSQM+ASGKGGHGSM+GSRMGDRRAAP
Sbjct: 205  EERRIRKKREYEKHRQEEKHRLQMKESQNVVMQKSQMVASGKGGHGSMVGSRMGDRRAAP 264

Query: 1300 LLSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRFTRYTITSLEKNYKP 1121
            LLSGER ENRLKKPTTFLCKLKFRNELP+PSAQPKLMALKKDKDRFTRYT +SLEKNYKP
Sbjct: 265  LLSGERTENRLKKPTTFLCKLKFRNELPEPSAQPKLMALKKDKDRFTRYTFSSLEKNYKP 324

Query: 1120 QLHVEXXXXXXXXXXXLSVYNPPNARQXXXXXXXXXXXXXEVVTPVKKDGIKRKERPTDE 941
            QLHVE           LSVYNPP+ R              EVVTPVKKDGIKRKERPTD+
Sbjct: 325  QLHVEPDLGIPLDLLDLSVYNPPSVRPPLDPEDEELLRDDEVVTPVKKDGIKRKERPTDK 384

Query: 940  GVSWLVKTQYISPLSMESTRQSLTEKQAKELREMKGGRNILENLNDRERQIKDIEASFGA 761
            GVSWLVKTQYISPLSMES RQSLTEKQAKELREMKGGR+ILENLNDRERQIK+IEASF A
Sbjct: 385  GVSWLVKTQYISPLSMESARQSLTEKQAKELREMKGGRSILENLNDRERQIKEIEASFEA 444

Query: 760  CKLRPIHATNKNLQPVEIMPLLPDFERYDDQFVVASFDGAPTADSEIFSKMDKSVRDAHE 581
            CKLRPIHATNKNLQPVEI+PLLPDFERYDDQFV A+FDGAPTADSEI+SKMDKSVRDAHE
Sbjct: 445  CKLRPIHATNKNLQPVEILPLLPDFERYDDQFVAATFDGAPTADSEIYSKMDKSVRDAHE 504

Query: 580  SQAIVKSFVATGLDPANPEKFLAYMVPSVNELSKDIYNENEDVLFSWVREYHWDVRGDDA 401
            S+AI+KS+VATG D ANPEKFLAYMVPSVNELSKD+Y+ENEDV FSWVREYHWDVRGDDA
Sbjct: 505  SRAIMKSYVATGSDSANPEKFLAYMVPSVNELSKDMYDENEDVSFSWVREYHWDVRGDDA 564

Query: 400  ------------XXARYVPLPTKLNLRKKRAIEGRSSDEVEHFPIPSSITVRRRANVAAI 257
                          ARYVPLPTKLNLRKKRAIEGRS+DEVEHFPIPSSI VRRRANV AI
Sbjct: 565  DDPTTYLVSFDDDEARYVPLPTKLNLRKKRAIEGRSNDEVEHFPIPSSIAVRRRANVTAI 624

Query: 256  ELKEPGAYXXXXXXXXXXKTGMLDSQDGIERSHGGLRHQEPYQSSGEEDDMYD 98
            ELKE GAY          K G +DSQ+ +ERSH G R Q+PYQSSG EDDMYD
Sbjct: 625  ELKEQGAYSNSKGNSSSSKMGRVDSQEDLERSHNGSRQQDPYQSSGAEDDMYD 677


>ref|XP_006465693.1| PREDICTED: RNA polymerase II-associated factor 1 homolog isoform X2
            [Citrus sinensis]
          Length = 570

 Score =  792 bits (2045), Expect = 0.0
 Identities = 412/533 (77%), Positives = 433/533 (81%), Gaps = 12/533 (2%)
 Frame = -1

Query: 1660 PPPGVTKDAEGRDFGLSDRDKRVSKEVSRRDHGHSKQQRPPVPPPGVTKVNGGSGMVXXX 1481
            PPP   KD EGRD G SD DKR SKEVSR D GHSKQ RPPVPPPGV KVNGGSG V   
Sbjct: 44   PPPPPPKDVEGRDTGTSDHDKRASKEVSRHDPGHSKQHRPPVPPPGVKKVNGGSGRVETE 103

Query: 1480 XXXXXXXXXXXXXXRQEEKHRQQIKESQNVVMQKSQMMASGKGGHGSMIGSRMGDRRAAP 1301
                          RQEEKHR Q+KESQNVVMQKSQM+ASGKGGHGSM GSRMGDRRAAP
Sbjct: 104  EERRVRKKREYEKHRQEEKHRLQMKESQNVVMQKSQMVASGKGGHGSMAGSRMGDRRAAP 163

Query: 1300 LLSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRFTRYTITSLEKNYKP 1121
            LLSGERIENRLKKPTTFLCKLKFRNELP+PSAQPKLMALKKDKDRFTRYT +SLEKNYKP
Sbjct: 164  LLSGERIENRLKKPTTFLCKLKFRNELPEPSAQPKLMALKKDKDRFTRYTFSSLEKNYKP 223

Query: 1120 QLHVEXXXXXXXXXXXLSVYNPPNARQXXXXXXXXXXXXXEVVTPVKKDGIKRKERPTDE 941
            QLHVE           LSVYNPP+ R              EVVTPVKKDGIKRKERPTD+
Sbjct: 224  QLHVEPDLGIPLDLLDLSVYNPPSVRPPLDPEDEELLRDDEVVTPVKKDGIKRKERPTDK 283

Query: 940  GVSWLVKTQYISPLSMESTRQSLTEKQAKELREMKGGRNILENLNDRERQIKDIEASFGA 761
            GVSWLVKTQYISPLSMES RQSLTEKQAKELREMKGGR+ILENLNDRERQIK+IEASF A
Sbjct: 284  GVSWLVKTQYISPLSMESARQSLTEKQAKELREMKGGRSILENLNDRERQIKEIEASFEA 343

Query: 760  CKLRPIHATNKNLQPVEIMPLLPDFERYDDQFVVASFDGAPTADSEIFSKMDKSVRDAHE 581
            CKLRPIHATNKNLQPVEI+PLLPDFERYDDQFV A+FDGAPTADSEI+SKMDKSVRDAHE
Sbjct: 344  CKLRPIHATNKNLQPVEILPLLPDFERYDDQFVAATFDGAPTADSEIYSKMDKSVRDAHE 403

Query: 580  SQAIVKSFVATGLDPANPEKFLAYMVPSVNELSKDIYNENEDVLFSWVREYHWDVRGDDA 401
            S+AI+KS+VATG D ANPEKFLAYMVPSVNELSKD+Y+ENEDV FSWVREYHWDVRGDDA
Sbjct: 404  SRAIMKSYVATGSDSANPEKFLAYMVPSVNELSKDMYDENEDVSFSWVREYHWDVRGDDA 463

Query: 400  ------------XXARYVPLPTKLNLRKKRAIEGRSSDEVEHFPIPSSITVRRRANVAAI 257
                          ARYVPLPTKLNLRKKRAIEGRS+DEVEHFPIPSSI VRRRANV AI
Sbjct: 464  DDPTTYLVSFDDDEARYVPLPTKLNLRKKRAIEGRSNDEVEHFPIPSSIAVRRRANVTAI 523

Query: 256  ELKEPGAYXXXXXXXXXXKTGMLDSQDGIERSHGGLRHQEPYQSSGEEDDMYD 98
            ELKE G            K G +DSQ+ +ERSH G RHQ+PYQSSG EDDMYD
Sbjct: 524  ELKEQGG------NSSSSKMGRVDSQEDLERSHNGSRHQDPYQSSGAEDDMYD 570


>gb|KDO51788.1| hypothetical protein CISIN_1g005794mg [Citrus sinensis]
          Length = 671

 Score =  790 bits (2041), Expect = 0.0
 Identities = 411/533 (77%), Positives = 433/533 (81%), Gaps = 12/533 (2%)
 Frame = -1

Query: 1660 PPPGVTKDAEGRDFGLSDRDKRVSKEVSRRDHGHSKQQRPPVPPPGVTKVNGGSGMVXXX 1481
            PPP   KD EGRD G SDRDKR SKEVSR D GHSKQ RPPVPPPGV KVNGGSG V   
Sbjct: 145  PPPPPPKDVEGRDTGTSDRDKRASKEVSRHDPGHSKQHRPPVPPPGVKKVNGGSGRVETE 204

Query: 1480 XXXXXXXXXXXXXXRQEEKHRQQIKESQNVVMQKSQMMASGKGGHGSMIGSRMGDRRAAP 1301
                          RQEEKHR Q+KESQNVVMQKSQM+ASGKGGHGSM+GSRMGDRRAAP
Sbjct: 205  EERRIRKKREYEKHRQEEKHRLQMKESQNVVMQKSQMVASGKGGHGSMVGSRMGDRRAAP 264

Query: 1300 LLSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRFTRYTITSLEKNYKP 1121
            LLSGER ENRLKKPTTFLCKLKFRNELP+PSAQPKLMALKKDKDRFTRYT +SLEKNYKP
Sbjct: 265  LLSGERTENRLKKPTTFLCKLKFRNELPEPSAQPKLMALKKDKDRFTRYTFSSLEKNYKP 324

Query: 1120 QLHVEXXXXXXXXXXXLSVYNPPNARQXXXXXXXXXXXXXEVVTPVKKDGIKRKERPTDE 941
            QLHVE           LSVYNPP+ R              EVVTPVKKDGIKRKERPTD+
Sbjct: 325  QLHVEPDLGIPLDLLDLSVYNPPSVRPPLDPEDEELLRDDEVVTPVKKDGIKRKERPTDK 384

Query: 940  GVSWLVKTQYISPLSMESTRQSLTEKQAKELREMKGGRNILENLNDRERQIKDIEASFGA 761
            GVSWLVKTQYISPLSMES RQSLTEKQAKELREMKGGR+ILENLNDRERQIK+IEASF A
Sbjct: 385  GVSWLVKTQYISPLSMESARQSLTEKQAKELREMKGGRSILENLNDRERQIKEIEASFEA 444

Query: 760  CKLRPIHATNKNLQPVEIMPLLPDFERYDDQFVVASFDGAPTADSEIFSKMDKSVRDAHE 581
            CKLRPIHATNKNLQPVEI+PLLPDFERYDDQFV A+FDGAPTADSEI+SKMDKSVRDAHE
Sbjct: 445  CKLRPIHATNKNLQPVEILPLLPDFERYDDQFVAATFDGAPTADSEIYSKMDKSVRDAHE 504

Query: 580  SQAIVKSFVATGLDPANPEKFLAYMVPSVNELSKDIYNENEDVLFSWVREYHWDVRGDDA 401
            S+AI+KS+VATG D ANPEKFLAYMVPSVNELSKD+Y+ENEDV FSWVREYHWDVRGDDA
Sbjct: 505  SRAIMKSYVATGSDSANPEKFLAYMVPSVNELSKDMYDENEDVSFSWVREYHWDVRGDDA 564

Query: 400  ------------XXARYVPLPTKLNLRKKRAIEGRSSDEVEHFPIPSSITVRRRANVAAI 257
                          ARYVPLPTKLNLRKKRAIEGRS+DEVEHFPIPSSI VRRRANV AI
Sbjct: 565  DDPTTYLVSFDDDEARYVPLPTKLNLRKKRAIEGRSNDEVEHFPIPSSIAVRRRANVTAI 624

Query: 256  ELKEPGAYXXXXXXXXXXKTGMLDSQDGIERSHGGLRHQEPYQSSGEEDDMYD 98
            ELKE G            K G +DSQ+ +ERSH G R Q+PYQSSG EDDMYD
Sbjct: 625  ELKEQGG------NSSSSKMGRVDSQEDLERSHNGSRQQDPYQSSGAEDDMYD 671


>ref|XP_006426878.1| hypothetical protein CICLE_v10025066mg [Citrus clementina]
            gi|557528868|gb|ESR40118.1| hypothetical protein
            CICLE_v10025066mg [Citrus clementina]
          Length = 632

 Score =  750 bits (1936), Expect = 0.0
 Identities = 387/486 (79%), Positives = 405/486 (83%), Gaps = 12/486 (2%)
 Frame = -1

Query: 1660 PPPGVTKDAEGRDFGLSDRDKRVSKEVSRRDHGHSKQQRPPVPPPGVTKVNGGSGMVXXX 1481
            PPP   KD EGRD G SDRDKR SKEVSR D GHSKQ RPPVPPPGV KVNGGSG V   
Sbjct: 145  PPPPPPKDVEGRDTGTSDRDKRASKEVSRHDPGHSKQHRPPVPPPGVKKVNGGSGRVETE 204

Query: 1480 XXXXXXXXXXXXXXRQEEKHRQQIKESQNVVMQKSQMMASGKGGHGSMIGSRMGDRRAAP 1301
                          RQEEKHR Q+KESQNVVMQKSQM+ASGKGGHGSM+GSRMGDRRAAP
Sbjct: 205  EERRIRKKREYEKHRQEEKHRLQMKESQNVVMQKSQMVASGKGGHGSMVGSRMGDRRAAP 264

Query: 1300 LLSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRFTRYTITSLEKNYKP 1121
            LLSGER ENRLKKPTTFLCKLKFRNELP+PSAQPKLMALKKDKDRFTRYT +SLEKNYKP
Sbjct: 265  LLSGERTENRLKKPTTFLCKLKFRNELPEPSAQPKLMALKKDKDRFTRYTFSSLEKNYKP 324

Query: 1120 QLHVEXXXXXXXXXXXLSVYNPPNARQXXXXXXXXXXXXXEVVTPVKKDGIKRKERPTDE 941
            QLHVE           LSVYNPP+ R              EVVTPVKKDGIKRKERPTD+
Sbjct: 325  QLHVEPDLGIPLDLLDLSVYNPPSVRPPLDPEDEELLRDDEVVTPVKKDGIKRKERPTDK 384

Query: 940  GVSWLVKTQYISPLSMESTRQSLTEKQAKELREMKGGRNILENLNDRERQIKDIEASFGA 761
            GVSWLVKTQYISPLSMES RQSLTEKQAKELREMKGGR+ILENLNDRERQIK+IEASF A
Sbjct: 385  GVSWLVKTQYISPLSMESARQSLTEKQAKELREMKGGRSILENLNDRERQIKEIEASFEA 444

Query: 760  CKLRPIHATNKNLQPVEIMPLLPDFERYDDQFVVASFDGAPTADSEIFSKMDKSVRDAHE 581
            CKLRPIHATNKNLQPVEI+PLLPDFERYDDQFV A+FDGAPTADSEI+SKMDKSVRDAHE
Sbjct: 445  CKLRPIHATNKNLQPVEILPLLPDFERYDDQFVAATFDGAPTADSEIYSKMDKSVRDAHE 504

Query: 580  SQAIVKSFVATGLDPANPEKFLAYMVPSVNELSKDIYNENEDVLFSWVREYHWDVRGDDA 401
            S+AI+KS+VATG D ANPEKFLAYMVPSVNELSKD+Y+ENEDV FSWVREYHWDVRGDDA
Sbjct: 505  SRAIMKSYVATGSDSANPEKFLAYMVPSVNELSKDMYDENEDVSFSWVREYHWDVRGDDA 564

Query: 400  ------------XXARYVPLPTKLNLRKKRAIEGRSSDEVEHFPIPSSITVRRRANVAAI 257
                          ARYVPLPTKLNLRKKRAIEGRS+DEVEHFPIPSSI VRRRANV AI
Sbjct: 565  DDPTTYLVSFDDDEARYVPLPTKLNLRKKRAIEGRSNDEVEHFPIPSSIAVRRRANVTAI 624

Query: 256  ELKEPG 239
            ELKE G
Sbjct: 625  ELKEQG 630


>ref|XP_007024308.1| Hydroxyproline-rich glycoprotein family protein isoform 2 [Theobroma
            cacao] gi|508779674|gb|EOY26930.1| Hydroxyproline-rich
            glycoprotein family protein isoform 2 [Theobroma cacao]
          Length = 562

 Score =  657 bits (1694), Expect = 0.0
 Identities = 352/540 (65%), Positives = 406/540 (75%), Gaps = 21/540 (3%)
 Frame = -1

Query: 1660 PPPGVTKDAEGRDFGLSDRDKRVSKEV---SRRDHGHS------KQQRPPVPPPGVTKVN 1508
            PPP   K++ G D GL++R +  +++     RR+HGHS      + Q+P +PP  V K N
Sbjct: 30   PPPPPPKESVG-DKGLNERSQGGNRDFLGSGRREHGHSNHAAGVRDQKPMMPP--VKKPN 86

Query: 1507 GGSGMVXXXXXXXXXXXXXXXXXRQEEKHRQQIKESQNVVMQKSQMMASGKGGHGSMIGS 1328
            G +G V                 RQEEKHRQQ+KESQ     K+QMM SGKG HGSM+GS
Sbjct: 87   GPAGRVETEEERRLRKKREFEKQRQEEKHRQQMKESQ-----KTQMMPSGKG-HGSMVGS 140

Query: 1327 RMGDRRAAPLLSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRFTRYTI 1148
            RMGDRRA P LSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRFT+YTI
Sbjct: 141  RMGDRRATPFLSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRFTKYTI 200

Query: 1147 TSLEKNYKPQLHVEXXXXXXXXXXXLSVYNPPNARQXXXXXXXXXXXXXEVVTPVKKDGI 968
            TSLEK YKP+L VE           LSVYNPP+ R              E VTP+KKDGI
Sbjct: 201  TSLEKMYKPKLFVEPDLGIPLDLLDLSVYNPPSVRPSLAPEDAELLHDDEAVTPIKKDGI 260

Query: 967  KRKERPTDEGVSWLVKTQYISPLSMESTRQSLTEKQAKELREMKGGRNILENLNDRERQI 788
            +RKERPTD+GVSWLVKTQYISPLSMEST+QSLTEKQAKELRE+KGGRNILENLN+RERQI
Sbjct: 261  RRKERPTDKGVSWLVKTQYISPLSMESTKQSLTEKQAKELRELKGGRNILENLNNRERQI 320

Query: 787  KDIEASFGACKLRPIHATNKNLQPVEIMPLLPDFERYDDQFVVASFDGAPTADSEIFSKM 608
            K+IEASF A KLRP+HATNKNL+PVE+MPLLPDF+RY+DQFV+ +FDGAPTADSEIFSK+
Sbjct: 321  KEIEASFEASKLRPVHATNKNLEPVEVMPLLPDFDRYNDQFVMVAFDGAPTADSEIFSKL 380

Query: 607  DKSVRDAHESQAIVKSFVATGLDPANPEKFLAYMVPSVNELSKDIYNENEDVLFSWVREY 428
            D SVRD HES+AI+KS++A   DPANPEKFLAYMVPS++ELSK +Y+E+EDV +SWVREY
Sbjct: 381  DDSVRDEHESRAIMKSYLAASSDPANPEKFLAYMVPSLDELSKGMYDEHEDVSYSWVREY 440

Query: 427  HWDVRGDDA------------XXARYVPLPTKLNLRKKRAIEGRSSDEVEHFPIPSSITV 284
            +WDVRGDDA              ARYVPLPTKLNLRKKRA EGR+ DE+EHFPIP+ ITV
Sbjct: 441  NWDVRGDDANDPTTYLVSFDEGEARYVPLPTKLNLRKKRAREGRTGDEIEHFPIPARITV 500

Query: 283  RRRANVAAIELKEPGAYXXXXXXXXXXKTGMLDSQDGIERSHGGLRHQEPYQSSGEEDDM 104
            RRR+ VAAIELKEP  Y          K G LD++DG+ RSH   RH +  Q SG EDD+
Sbjct: 501  RRRSTVAAIELKEPEVYTSSRGGMSSSKIGRLDAEDGLGRSHKLARHHDVDQYSGAEDDL 560


>ref|XP_007024307.1| Hydroxyproline-rich glycoprotein family protein isoform 1 [Theobroma
            cacao] gi|508779673|gb|EOY26929.1| Hydroxyproline-rich
            glycoprotein family protein isoform 1 [Theobroma cacao]
          Length = 685

 Score =  657 bits (1694), Expect = 0.0
 Identities = 352/540 (65%), Positives = 406/540 (75%), Gaps = 21/540 (3%)
 Frame = -1

Query: 1660 PPPGVTKDAEGRDFGLSDRDKRVSKEV---SRRDHGHS------KQQRPPVPPPGVTKVN 1508
            PPP   K++ G D GL++R +  +++     RR+HGHS      + Q+P +PP  V K N
Sbjct: 153  PPPPPPKESVG-DKGLNERSQGGNRDFLGSGRREHGHSNHAAGVRDQKPMMPP--VKKPN 209

Query: 1507 GGSGMVXXXXXXXXXXXXXXXXXRQEEKHRQQIKESQNVVMQKSQMMASGKGGHGSMIGS 1328
            G +G V                 RQEEKHRQQ+KESQ     K+QMM SGKG HGSM+GS
Sbjct: 210  GPAGRVETEEERRLRKKREFEKQRQEEKHRQQMKESQ-----KTQMMPSGKG-HGSMVGS 263

Query: 1327 RMGDRRAAPLLSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRFTRYTI 1148
            RMGDRRA P LSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRFT+YTI
Sbjct: 264  RMGDRRATPFLSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRFTKYTI 323

Query: 1147 TSLEKNYKPQLHVEXXXXXXXXXXXLSVYNPPNARQXXXXXXXXXXXXXEVVTPVKKDGI 968
            TSLEK YKP+L VE           LSVYNPP+ R              E VTP+KKDGI
Sbjct: 324  TSLEKMYKPKLFVEPDLGIPLDLLDLSVYNPPSVRPSLAPEDAELLHDDEAVTPIKKDGI 383

Query: 967  KRKERPTDEGVSWLVKTQYISPLSMESTRQSLTEKQAKELREMKGGRNILENLNDRERQI 788
            +RKERPTD+GVSWLVKTQYISPLSMEST+QSLTEKQAKELRE+KGGRNILENLN+RERQI
Sbjct: 384  RRKERPTDKGVSWLVKTQYISPLSMESTKQSLTEKQAKELRELKGGRNILENLNNRERQI 443

Query: 787  KDIEASFGACKLRPIHATNKNLQPVEIMPLLPDFERYDDQFVVASFDGAPTADSEIFSKM 608
            K+IEASF A KLRP+HATNKNL+PVE+MPLLPDF+RY+DQFV+ +FDGAPTADSEIFSK+
Sbjct: 444  KEIEASFEASKLRPVHATNKNLEPVEVMPLLPDFDRYNDQFVMVAFDGAPTADSEIFSKL 503

Query: 607  DKSVRDAHESQAIVKSFVATGLDPANPEKFLAYMVPSVNELSKDIYNENEDVLFSWVREY 428
            D SVRD HES+AI+KS++A   DPANPEKFLAYMVPS++ELSK +Y+E+EDV +SWVREY
Sbjct: 504  DDSVRDEHESRAIMKSYLAASSDPANPEKFLAYMVPSLDELSKGMYDEHEDVSYSWVREY 563

Query: 427  HWDVRGDDA------------XXARYVPLPTKLNLRKKRAIEGRSSDEVEHFPIPSSITV 284
            +WDVRGDDA              ARYVPLPTKLNLRKKRA EGR+ DE+EHFPIP+ ITV
Sbjct: 564  NWDVRGDDANDPTTYLVSFDEGEARYVPLPTKLNLRKKRAREGRTGDEIEHFPIPARITV 623

Query: 283  RRRANVAAIELKEPGAYXXXXXXXXXXKTGMLDSQDGIERSHGGLRHQEPYQSSGEEDDM 104
            RRR+ VAAIELKEP  Y          K G LD++DG+ RSH   RH +  Q SG EDD+
Sbjct: 624  RRRSTVAAIELKEPEVYTSSRGGMSSSKIGRLDAEDGLGRSHKLARHHDVDQYSGAEDDL 683


>ref|XP_010098144.1| hypothetical protein L484_026278 [Morus notabilis]
            gi|587885724|gb|EXB74581.1| hypothetical protein
            L484_026278 [Morus notabilis]
          Length = 697

 Score =  639 bits (1649), Expect = e-180
 Identities = 333/545 (61%), Positives = 401/545 (73%), Gaps = 26/545 (4%)
 Frame = -1

Query: 1660 PPPGVTKDAEGRDF----GLSDRDKRVSKEVS---RRDHG-------HSKQQRPPVPPPG 1523
            PPP     ++G++     GL +RD+ VSKEV+   RR+HG       H KQ + PVP   
Sbjct: 152  PPPPPPPQSQGKENVHHRGLQERDRGVSKEVAGSGRREHGYSNHHGTHHKQHKYPVPSVP 211

Query: 1522 VTKVNGGSGMVXXXXXXXXXXXXXXXXXRQEEKHRQQIKESQNVVMQKSQMMASGKGGHG 1343
            V K NG  G V                 +QEEKHRQ +KESQ+  +QK+Q++++ KG HG
Sbjct: 212  VKKSNGPMGRVETEEERRLRKKREFEKQKQEEKHRQHLKESQHSALQKTQILSAAKG-HG 270

Query: 1342 SMIGSRMGDRRAAPLLSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRF 1163
            S+ GSRMG+RRA   LSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLM++K++KD++
Sbjct: 271  SIAGSRMGERRATSFLSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMSMKREKDQY 330

Query: 1162 TRYTITSLEKNYKPQLHVEXXXXXXXXXXXLSVYNPPNARQXXXXXXXXXXXXXEVVTPV 983
            ++YTITSLEK YKP+L VE           LSVYNPP+ R              E VTPV
Sbjct: 331  SKYTITSLEKTYKPKLFVEPDLGIPLNLLDLSVYNPPSVRPPLDPEDEELLRDDEAVTPV 390

Query: 982  KKDGIKRKERPTDEGVSWLVKTQYISPLSMESTRQSLTEKQAKELREMKGGRNILENLND 803
            KKDGIKRKERPTD+GV+WLVKTQYISPLSMEST+QSLTEKQAKELRE+KGGRNILENLND
Sbjct: 391  KKDGIKRKERPTDKGVAWLVKTQYISPLSMESTKQSLTEKQAKELRELKGGRNILENLND 450

Query: 802  RERQIKDIEASFGACKLRPIHATNKNLQPVEIMPLLPDFERYDDQFVVASFDGAPTADSE 623
            R+RQIK+I+ASF ACK RP+HATNK+L PVE++PLLPDF+RYDDQFV+A+FD APTADSE
Sbjct: 451  RDRQIKEIQASFEACKSRPVHATNKSLYPVEVLPLLPDFDRYDDQFVLAAFDSAPTADSE 510

Query: 622  IFSKMDKSVRDAHESQAIVKSFVATGLDPANPEKFLAYMVPSVNELSKDIYNENEDVLFS 443
            ++SKMD+S+RDAHESQA++KS+  TG DP NPEKFLAYMVPS +ELSKDIY+E+EDV +S
Sbjct: 511  VYSKMDQSIRDAHESQAVLKSYKVTGSDPGNPEKFLAYMVPSPDELSKDIYDEHEDVSYS 570

Query: 442  WVREYHWDVRGDDA------------XXARYVPLPTKLNLRKKRAIEGRSSDEVEHFPIP 299
            WVREYHWDVRGDDA              ARY+PLPTKL LRKKRA EGRS DEVEHFP+P
Sbjct: 571  WVREYHWDVRGDDADDPTTYLVSFDETEARYLPLPTKLVLRKKRAKEGRSGDEVEHFPVP 630

Query: 298  SSITVRRRANVAAIELKEPGAYXXXXXXXXXXKTGMLDSQDGIERSHGGLRHQEPYQSSG 119
            + +TVRRR  V+ +ELK+   Y          K G  D +DG+ERSH   R ++  + SG
Sbjct: 631  ARVTVRRRPTVSVVELKDAEVYSNPRGSLSNFKRGGSDVEDGLERSHKVARQEDVDEYSG 690

Query: 118  EEDDM 104
             EDD+
Sbjct: 691  AEDDL 695


>ref|XP_012484868.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Gossypium
            raimondii] gi|763767828|gb|KJB35043.1| hypothetical
            protein B456_006G096900 [Gossypium raimondii]
            gi|763767829|gb|KJB35044.1| hypothetical protein
            B456_006G096900 [Gossypium raimondii]
          Length = 676

 Score =  639 bits (1649), Expect = e-180
 Identities = 343/542 (63%), Positives = 398/542 (73%), Gaps = 21/542 (3%)
 Frame = -1

Query: 1660 PPPGVTKDAEGRDFGLSDRDKRVSKEVS---RRDHGHS------KQQRPPVPPPGVTKVN 1508
            PPP   K+  G+  GL++R+K  +++ S   RR+HGHS      ++Q+P VPP  V K N
Sbjct: 144  PPPPPPKENAGKT-GLNERNKGGNRDYSGSGRREHGHSNHGGGGREQKPMVPP--VKKPN 200

Query: 1507 GGSGMVXXXXXXXXXXXXXXXXXRQEEKHRQQIKESQNVVMQKSQMMASGKGGHGSMIGS 1328
            G  G V                 RQEEK RQQ+KESQ     K+QMM SGK  HGS++GS
Sbjct: 201  GPPGRVETEEERRLRKKREFEKQRQEEKQRQQMKESQ-----KTQMMTSGKA-HGSIVGS 254

Query: 1327 RMGDRRAAPLLSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRFTRYTI 1148
            RMGD+RA   LSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLM+LKKDKDRFT+YTI
Sbjct: 255  RMGDKRATLFLSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMSLKKDKDRFTKYTI 314

Query: 1147 TSLEKNYKPQLHVEXXXXXXXXXXXLSVYNPPNARQXXXXXXXXXXXXXEVVTPVKKDGI 968
            TSLEK YKP+L VE           LSVYNPP+ R                +TPVK+DGI
Sbjct: 315  TSLEKMYKPKLFVEPDLGIPLDLLDLSVYNPPSIRLPLAPEDEELLRDDAAITPVKRDGI 374

Query: 967  KRKERPTDEGVSWLVKTQYISPLSMESTRQSLTEKQAKELREMKGGRNILENLNDRERQI 788
            +RKERPTD+GVSWLVKTQYISPLSMEST+QSLTEKQAKELRE+KGGRN+L NLN+RERQI
Sbjct: 375  RRKERPTDKGVSWLVKTQYISPLSMESTKQSLTEKQAKELRELKGGRNLLVNLNNRERQI 434

Query: 787  KDIEASFGACKLRPIHATNKNLQPVEIMPLLPDFERYDDQFVVASFDGAPTADSEIFSKM 608
            K+IEASF A KLRP+HATNKNL+P+E+MPLLPDFERYDDQFV+ +FD APTADSEIFSK+
Sbjct: 435  KEIEASFEASKLRPVHATNKNLEPIEVMPLLPDFERYDDQFVMVAFDNAPTADSEIFSKL 494

Query: 607  DKSVRDAHESQAIVKSFVATGLDPANPEKFLAYMVPSVNELSKDIYNENEDVLFSWVREY 428
              SVRD HES+AI+KS+ A+  DPANPEKFLAYMVPS+ ELSKD+Y+E+ED+ +SWVREY
Sbjct: 495  HGSVRDEHESRAIMKSYQASSSDPANPEKFLAYMVPSLGELSKDMYDEHEDITYSWVREY 554

Query: 427  HWDVRGDDA------------XXARYVPLPTKLNLRKKRAIEGRSSDEVEHFPIPSSITV 284
            HWDVRGDDA              ARYVPLPTKLNLRKKRA EGRS DE+EHFP+P+ ITV
Sbjct: 555  HWDVRGDDANDPTTYLVSFDEGEARYVPLPTKLNLRKKRAREGRSGDEIEHFPVPARITV 614

Query: 283  RRRANVAAIELKEPGAYXXXXXXXXXXKTGMLDSQDGIERSHGGLRHQEPYQSSGEEDDM 104
            RRR  VAAIEL EP  Y          K   LD++DG+ R H   RHQ+  Q SG EDD+
Sbjct: 615  RRRPTVAAIELHEPEVYSNSRGGISSSKMARLDAEDGLGRPHKLSRHQDIDQYSGAEDDL 674

Query: 103  YD 98
             D
Sbjct: 675  SD 676


>ref|XP_002278075.3| PREDICTED: RNA polymerase II-associated factor 1 homolog [Vitis
            vinifera]
          Length = 702

 Score =  635 bits (1637), Expect = e-179
 Identities = 341/543 (62%), Positives = 399/543 (73%), Gaps = 22/543 (4%)
 Frame = -1

Query: 1660 PPPGVTKDAEGRDFGLSDRDKRVSKEV---SRRDHGHS------KQQRPPVPPPGVTKVN 1508
            PP G  K+    D G   RDK   K++    RR+ GHS      KQQ+PPVPP  V K N
Sbjct: 163  PPQGQNKEP-APDGGSHGRDKGAPKDLRGAGRREPGHSNQGPSGKQQKPPVPPAPVKKSN 221

Query: 1507 GGSGMVXXXXXXXXXXXXXXXXXRQEEKHRQQIKESQNVVMQKSQMMASGKGGHGSMIG- 1331
            G  G V                 RQEEK + Q+KESQN V+QK+QM++SGKG HGS++G 
Sbjct: 222  GPPGRVETEEERRLRKKREFEKQRQEEKQKHQLKESQNTVLQKTQMLSSGKG-HGSVVGG 280

Query: 1330 SRMGDRRAAPLLSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRFTRYT 1151
            SRMG+RR  P LSG+RIENRL+KPTTFLCKLKFRNELPDP+AQPKLMALK DKDRFT+YT
Sbjct: 281  SRMGERRTTPFLSGDRIENRLRKPTTFLCKLKFRNELPDPTAQPKLMALKTDKDRFTKYT 340

Query: 1150 ITSLEKNYKPQLHVEXXXXXXXXXXXLSVYNPPNARQXXXXXXXXXXXXXEVVTPVKKDG 971
            ITSLEK +KPQL VE           LSVYNPP+ R+             E VTPVKK+G
Sbjct: 341  ITSLEKMHKPQLFVEPDLGIPLDLLDLSVYNPPSVRRPLDPEDEELLRDDESVTPVKKEG 400

Query: 970  IKRKERPTDEGVSWLVKTQYISPLSMESTRQSLTEKQAKELREMKGGRNILENLNDRERQ 791
            IK+KERPTD+GVSWLVKTQYISPLS EST+QSLTEKQAKELRE KGGRNILEN N RER+
Sbjct: 401  IKKKERPTDKGVSWLVKTQYISPLSTESTKQSLTEKQAKELRETKGGRNILENFNSRERK 460

Query: 790  IKDIEASFGACKLRPIHATNKNLQPVEIMPLLPDFERYDDQFVVASFDGAPTADSEIFSK 611
            I++IEA+F A K+ P+H+TNK+L+PVEI+PLLPDF RYDD FVVASFD APTADSEI+SK
Sbjct: 461  IQNIEAAFAASKITPVHSTNKSLKPVEILPLLPDFARYDDSFVVASFDSAPTADSEIYSK 520

Query: 610  MDKSVRDAHESQAIVKSFVATGLDPANPEKFLAYMVPSVNELSKDIYNENEDVLFSWVRE 431
            +DK+VRD+HESQAI+KS++ATG DP+ PEKFLAYM PS +ELSKDIY+ENED  +SWVRE
Sbjct: 521  LDKTVRDSHESQAILKSYMATGSDPSKPEKFLAYMAPSPDELSKDIYDENEDTSYSWVRE 580

Query: 430  YHWDVRGDDA------------XXARYVPLPTKLNLRKKRAIEGRSSDEVEHFPIPSSIT 287
            YHWDVRGDDA              ARY+PLPTKL LRKKRA EGRSSDEVEHFP+PS +T
Sbjct: 581  YHWDVRGDDADDPTTYLVSFNKTDARYLPLPTKLLLRKKRAKEGRSSDEVEHFPVPSKVT 640

Query: 286  VRRRANVAAIELKEPGAYXXXXXXXXXXKTGMLDSQDGIERSHGGLRHQEPYQSSGEEDD 107
            VR+R NVAAIELK+   Y          K G +D +DG+ RS+ G++ Q   QSSG ED+
Sbjct: 641  VRQRPNVAAIELKDEEVYSSSKRGVSSSKRG-VDMEDGLGRSYKGVQDQHMDQSSGAEDE 699

Query: 106  MYD 98
            M D
Sbjct: 700  MSD 702


>ref|XP_007217663.1| hypothetical protein PRUPE_ppa002145mg [Prunus persica]
            gi|462413813|gb|EMJ18862.1| hypothetical protein
            PRUPE_ppa002145mg [Prunus persica]
          Length = 709

 Score =  632 bits (1631), Expect = e-178
 Identities = 340/542 (62%), Positives = 395/542 (72%), Gaps = 21/542 (3%)
 Frame = -1

Query: 1660 PPPGVTKDAEGRDFGLSDRDKRVSKEVS---RRDHGH------SKQQRPPVPPPGVTKVN 1508
            PPP  +KD  G D G    +K   ++VS   RR+HGH       KQ +PPVP   V K N
Sbjct: 174  PPPPQSKDG-GVDRG--SHEKGAPRDVSVSGRREHGHLNHGVPQKQHKPPVPSMPVKKAN 230

Query: 1507 GGSGMVXXXXXXXXXXXXXXXXXRQEEKHRQQIKESQNVVMQKSQMMASGKGGHGSMIGS 1328
            G  G V                 RQEEKHRQQ+K+SQN V+QK+QM++SGKG HGS+ GS
Sbjct: 231  GPPGRVETEEERRLRKKREFEKQRQEEKHRQQLKDSQNSVLQKTQMLSSGKG-HGSIAGS 289

Query: 1327 RMGDRRAAPLLSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRFTRYTI 1148
            RMG+RRA P LSGER ENRLKKPTTF+CKLKFRNELPDPSAQPKLM+LKKDKD++T+YTI
Sbjct: 290  RMGERRATPFLSGERTENRLKKPTTFVCKLKFRNELPDPSAQPKLMSLKKDKDQYTKYTI 349

Query: 1147 TSLEKNYKPQLHVEXXXXXXXXXXXLSVYNPPNARQXXXXXXXXXXXXXEVVTPVKKDGI 968
            TSLEK YKP+L VE           LSVYNPP+ R                 TPVK +GI
Sbjct: 350  TSLEKTYKPKLFVEPDLGIPLDLLDLSVYNPPSVRPPLALEDEELLRDDVAATPVKNNGI 409

Query: 967  KRKERPTDEGVSWLVKTQYISPLSMESTRQSLTEKQAKELREMKGGRNILENLNDRERQI 788
            +RKERPTD+GV+WLVKTQYISPLSM+S RQSLTEKQAKELREMKGGRNIL+NLNDRERQI
Sbjct: 410  RRKERPTDKGVAWLVKTQYISPLSMDSARQSLTEKQAKELREMKGGRNILDNLNDRERQI 469

Query: 787  KDIEASFGACKLRPIHATNKNLQPVEIMPLLPDFERYDDQFVVASFDGAPTADSEIFSKM 608
            KDIEASF ACK RP+HATNKNL PVEI+PLLPDFERY+DQFV+A+FDGAPTADSEI+SK+
Sbjct: 470  KDIEASFEACKSRPVHATNKNLYPVEILPLLPDFERYEDQFVLAAFDGAPTADSEIYSKL 529

Query: 607  DKSVRDAHESQAIVKSFVATGLDPANPEKFLAYMVPSVNELSKDIYNENEDVLFSWVREY 428
            D+S  DA+ES+AI+KS+  TG DPANPEKFLAYMVPS NELSKD Y+E+EDV +SWVREY
Sbjct: 530  DQSGHDAYESRAIMKSYKVTGADPANPEKFLAYMVPSPNELSKDPYDESEDVSYSWVREY 589

Query: 427  HWDVRGDDA------------XXARYVPLPTKLNLRKKRAIEGRSSDEVEHFPIPSSITV 284
            H+DVRGDD               ARY PLPTKL LRKKR+ EG++SDEVEHFP PS +TV
Sbjct: 590  HYDVRGDDVHDPTTYLVSFDEEEARYAPLPTKLVLRKKRSKEGKTSDEVEHFPAPSRVTV 649

Query: 283  RRRANVAAIELKEPGAYXXXXXXXXXXKTGMLDSQDGIERSHGGLRHQEPYQSSGEEDDM 104
            R+R+ VAAIELK+ G Y          KT   D +D +ER     RHQ+  + SG EDD+
Sbjct: 650  RQRSTVAAIELKDSGDY--SRGSVSNLKTRRFDVEDTLERPRKIARHQDIDEYSGAEDDL 707

Query: 103  YD 98
             D
Sbjct: 708  SD 709


>ref|XP_012470138.1| PREDICTED: RNA polymerase II-associated factor 1 homolog isoform X1
            [Gossypium raimondii] gi|763751196|gb|KJB18584.1|
            hypothetical protein B456_003G061700 [Gossypium
            raimondii]
          Length = 671

 Score =  632 bits (1630), Expect = e-178
 Identities = 343/542 (63%), Positives = 395/542 (72%), Gaps = 21/542 (3%)
 Frame = -1

Query: 1660 PPPGVTKDAEGRDFGLSDRDKRVSKEVS---RRDHGHS------KQQRPPVPPPGVTKVN 1508
            PPP   K++ G D  LS+R K  +++ S   RR+HGHS      ++ +P VPP  V   N
Sbjct: 143  PPPPPPKESAG-DKRLSERSKVGNRDFSGSGRREHGHSNHRIAGREHKPMVPP--VKNPN 199

Query: 1507 GGSGMVXXXXXXXXXXXXXXXXXRQEEKHRQQIKESQNVVMQKSQMMASGKGGHGSMIGS 1328
              +G V                 RQEEKHRQQ KESQ     K+Q+M+S K  HGSMIGS
Sbjct: 200  VHTGRVETEEERRLRKKRDFEKQRQEEKHRQQKKESQ-----KAQLMSSSKA-HGSMIGS 253

Query: 1327 RMGDRRAAPLLSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRFTRYTI 1148
            RMGDRR  P LSGERIENRLKKPTTFLCKLKFRNELPDP AQPKLMALKKDKDRFT+YTI
Sbjct: 254  RMGDRRGTPFLSGERIENRLKKPTTFLCKLKFRNELPDPCAQPKLMALKKDKDRFTKYTI 313

Query: 1147 TSLEKNYKPQLHVEXXXXXXXXXXXLSVYNPPNARQXXXXXXXXXXXXXEVVTPVKKDGI 968
            TSLEK YKP+L VE           LSVYNPP+ R                +TP+KKDGI
Sbjct: 314  TSLEKMYKPKLIVEPDLGIPLDLLDLSVYNPPSVRPPLAPEDEELLRDDVAITPIKKDGI 373

Query: 967  KRKERPTDEGVSWLVKTQYISPLSMESTRQSLTEKQAKELREMKGGRNILENLNDRERQI 788
            +RKERPTD+GVSWLVKTQYISPLSMEST+QSLTEKQAKELRE+KGGRN+LENLN+RERQI
Sbjct: 374  RRKERPTDKGVSWLVKTQYISPLSMESTKQSLTEKQAKELRELKGGRNLLENLNNRERQI 433

Query: 787  KDIEASFGACKLRPIHATNKNLQPVEIMPLLPDFERYDDQFVVASFDGAPTADSEIFSKM 608
            K+IEASF A KLRP+HATNKNL+PVE+MPLLPDF+R++DQFV+ +FDGAPTADSEIFSK+
Sbjct: 434  KEIEASFEASKLRPVHATNKNLEPVEVMPLLPDFDRHNDQFVMVAFDGAPTADSEIFSKL 493

Query: 607  DKSVRDAHESQAIVKSFVATGLDPANPEKFLAYMVPSVNELSKDIYNENEDVLFSWVREY 428
              SVRD HES+AI+KS+VA   DPANPEKFLAYMVPS++ELSKD+Y+E ED+ +SWVREY
Sbjct: 494  HDSVRDEHESRAIMKSYVAPSSDPANPEKFLAYMVPSLDELSKDMYDELEDISYSWVREY 553

Query: 427  HWDVRGD------------DAXXARYVPLPTKLNLRKKRAIEGRSSDEVEHFPIPSSITV 284
            HWDVRGD            D   ARYVPLPTKLNLRKKRA EGRS DE+EHFPIPS ITV
Sbjct: 554  HWDVRGDGANDPTTYLVSFDEGDARYVPLPTKLNLRKKRAREGRSGDEIEHFPIPSRITV 613

Query: 283  RRRANVAAIELKEPGAYXXXXXXXXXXKTGMLDSQDGIERSHGGLRHQEPYQSSGEEDDM 104
            RRR+  AAIELKEP  Y           +  LD++DG+ R     RHQ+  Q SG+EDD 
Sbjct: 614  RRRSTAAAIELKEPEVY----SNTRDRNSRRLDAEDGVGRPRKLARHQDVGQYSGDEDDF 669

Query: 103  YD 98
             D
Sbjct: 670  SD 671


>ref|XP_008462415.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II-associated factor 1
            homolog [Cucumis melo]
          Length = 705

 Score =  629 bits (1621), Expect = e-177
 Identities = 335/541 (61%), Positives = 393/541 (72%), Gaps = 20/541 (3%)
 Frame = -1

Query: 1660 PPPGVTKD-AEGRDFGLSDRDKRVSKEVS-----RRDHGHSKQQRPPVPPPGVTKVNGGS 1499
            PPP  ++  AEG++ G  +RDK VSK+ S     R +  H K Q+   PP    K NG S
Sbjct: 174  PPPSASQQKAEGKNMGAHERDKGVSKDPSYGRRDRENSNHDKHQKHSGPPMPPKKANGPS 233

Query: 1498 GMVXXXXXXXXXXXXXXXXXRQEEKHRQQIKESQNVVMQKSQMMASGKGGHGSMIGSRMG 1319
            G +                 RQ+E+HR  +KESQN ++QK+QM+++GK  HGS++GSRMG
Sbjct: 234  GRMETDDEKKLRKKREFEKQRQDERHRHHLKESQNTILQKTQMLSTGKV-HGSIVGSRMG 292

Query: 1318 DRRAAPLLSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRFTRYTITSL 1139
            +R+A P LSGERIENRLKKPTTFLCKLKFRNELPD SAQPKLM+L+K+KD +TRYTITSL
Sbjct: 293  ERKATPFLSGERIENRLKKPTTFLCKLKFRNELPDTSAQPKLMSLRKEKDHYTRYTITSL 352

Query: 1138 EKNYKPQLHVEXXXXXXXXXXXLSVYNPPNARQXXXXXXXXXXXXXEVVTPVKKDG-IKR 962
            EK YKPQL+VE           LSVYNPP+ R               + TPVKKDG IKR
Sbjct: 353  EKTYKPQLYVEPDLGIPLDLLDLSVYNPPSVRVPLAPEDEELLRDDVLKTPVKKDGGIKR 412

Query: 961  KERPTDEGVSWLVKTQYISPLSMESTRQSLTEKQAKELREMKGGRNILENLNDRERQIKD 782
            KERPTD+GV+WLVKTQYISPLS+EST+QSLTEKQAKELREMKGGRNILENLN+RERQIK+
Sbjct: 413  KERPTDKGVAWLVKTQYISPLSIESTKQSLTEKQAKELREMKGGRNILENLNNRERQIKE 472

Query: 781  IEASFGACKLRPIHATNKNLQPVEIMPLLPDFERYDDQFVVASFDGAPTADSEIFSKMDK 602
            IEASF ACK RPIHATNKNL PVE++PLLPDF+RYDD FVV +FD APTADSE F+K+D+
Sbjct: 473  IEASFEACKSRPIHATNKNLYPVEVLPLLPDFDRYDDPFVVVAFDSAPTADSETFNKLDQ 532

Query: 601  SVRDAHESQAIVKSFVATGLDPANPEKFLAYMVPSVNELSKDIYNENEDVLFSWVREYHW 422
            S+RDAHESQAI+KS++ATG DP+ PEKFLAYMVPS +ELSKDIY+E EDV +SWVREYHW
Sbjct: 533  SIRDAHESQAIMKSYMATGSDPSKPEKFLAYMVPSPDELSKDIYDEQEDVSYSWVREYHW 592

Query: 421  DVRGD------------DAXXARYVPLPTKLNLRKKRAIEGRSSDEVEHFPIPSSITVRR 278
            DVRGD            D   ARYVPLPTKL L KKRA EGRSSDEVEHFP P+ +TVRR
Sbjct: 593  DVRGDNVDDPTTYLVSFDDSEARYVPLPTKLVLXKKRAKEGRSSDEVEHFPAPARVTVRR 652

Query: 277  RANVAAIELKEPGAYXXXXXXXXXXKTGMLDSQDGIERSHGGLR-HQEPYQSSGEEDDMY 101
            R  VA +E+K+PG Y               D +DGI R H   R HQ+  Q SG ED+M 
Sbjct: 653  RPTVATLEVKDPGIYSNSKRGS--------DIEDGIGRLHKHDRHHQDMDQYSGAEDEMS 704

Query: 100  D 98
            D
Sbjct: 705  D 705


>ref|XP_008222683.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Prunus
            mume]
          Length = 684

 Score =  628 bits (1620), Expect = e-177
 Identities = 337/542 (62%), Positives = 396/542 (73%), Gaps = 21/542 (3%)
 Frame = -1

Query: 1660 PPPGVTKDAEGRDFGLSDRDKRVSKEVS---RRDHGH------SKQQRPPVPPPGVTKVN 1508
            PPP  +KD  G D G    +K  S+EVS   R +HGH       KQ +PPVP   V K N
Sbjct: 149  PPPPQSKDG-GVDRG--SHEKGASREVSVSGRGEHGHLNHGVPQKQHKPPVPSMQVKKAN 205

Query: 1507 GGSGMVXXXXXXXXXXXXXXXXXRQEEKHRQQIKESQNVVMQKSQMMASGKGGHGSMIGS 1328
            G  G +                 RQEEKHRQQ+K+SQN V+QK+QM++SGKG HGS+ GS
Sbjct: 206  GPPGRLETEEERRLRKKREFEKQRQEEKHRQQLKDSQNSVLQKTQMLSSGKG-HGSIAGS 264

Query: 1327 RMGDRRAAPLLSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRFTRYTI 1148
            RMG+RRA P LSGER ENRLKKPTTF+CKLKFRNELPDPSAQPKLM+LKKDKD++T+YTI
Sbjct: 265  RMGERRATPFLSGERTENRLKKPTTFVCKLKFRNELPDPSAQPKLMSLKKDKDQYTKYTI 324

Query: 1147 TSLEKNYKPQLHVEXXXXXXXXXXXLSVYNPPNARQXXXXXXXXXXXXXEVVTPVKKDGI 968
            TSLEK YKP+L VE           LSVYNPP+ R                 TPVKK+GI
Sbjct: 325  TSLEKTYKPKLFVEPDLGIPLDLLDLSVYNPPSVRPPLALEDEELLRDDVAATPVKKNGI 384

Query: 967  KRKERPTDEGVSWLVKTQYISPLSMESTRQSLTEKQAKELREMKGGRNILENLNDRERQI 788
            +RKERPTD+GV+WLVKTQYISP+SM+S RQSLTEKQAKELREMKGGRNIL+NLNDRERQI
Sbjct: 385  RRKERPTDKGVAWLVKTQYISPISMDSARQSLTEKQAKELREMKGGRNILDNLNDRERQI 444

Query: 787  KDIEASFGACKLRPIHATNKNLQPVEIMPLLPDFERYDDQFVVASFDGAPTADSEIFSKM 608
            K+IEASF ACK RP++ATNKNL PVE++PLLPDFERY+DQFV+A+FDGAPTADSEI+SK+
Sbjct: 445  KEIEASFEACKSRPVYATNKNLYPVEVLPLLPDFERYEDQFVLAAFDGAPTADSEIYSKL 504

Query: 607  DKSVRDAHESQAIVKSFVATGLDPANPEKFLAYMVPSVNELSKDIYNENEDVLFSWVREY 428
            D+S  DA+ES+AI+KS+  TG DPANPEKFLAYMVPS NELSKD Y+E+EDV +SWVREY
Sbjct: 505  DQSGHDAYESRAIMKSYKVTGADPANPEKFLAYMVPSPNELSKDPYDESEDVSYSWVREY 564

Query: 427  HWDVRGDDA------------XXARYVPLPTKLNLRKKRAIEGRSSDEVEHFPIPSSITV 284
            H+DVRGDD               ARY PLPTKL LRKKR+ EG++SDEVEHFP PS +TV
Sbjct: 565  HYDVRGDDVHDPTTYLVSFDEEEARYAPLPTKLVLRKKRSKEGKTSDEVEHFPAPSRVTV 624

Query: 283  RRRANVAAIELKEPGAYXXXXXXXXXXKTGMLDSQDGIERSHGGLRHQEPYQSSGEEDDM 104
            R+R+ VAAIELK+ G Y          KT   D +D +ER     RHQ+  + SG EDD+
Sbjct: 625  RQRSTVAAIELKDSGDY--SRGSVSNLKTRRFDVEDTLERPRKISRHQDIDEYSGAEDDL 682

Query: 103  YD 98
             D
Sbjct: 683  SD 684


>ref|XP_004141783.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Cucumis
            sativus] gi|700190348|gb|KGN45581.1| hypothetical protein
            Csa_7G452360 [Cucumis sativus]
          Length = 706

 Score =  628 bits (1620), Expect = e-177
 Identities = 333/540 (61%), Positives = 390/540 (72%), Gaps = 19/540 (3%)
 Frame = -1

Query: 1660 PPPGVTKD-AEGRDFGLSDRDKRVSKEVS-----RRDHGHSKQQRPPVPPPGVTKVNGGS 1499
            PPP  ++  AEG + G  +RDK V K+ S     R +  H K Q+   PP    K NG S
Sbjct: 176  PPPSASQQKAEGTNMGAHERDKGVPKDPSYGRRDRENSNHDKHQKHSGPPMPPKKANGPS 235

Query: 1498 GMVXXXXXXXXXXXXXXXXXRQEEKHRQQIKESQNVVMQKSQMMASGKGGHGSMIGSRMG 1319
            G +                 RQ+E+HR  +KESQN ++QK+QM+++GK  HGS++GSRMG
Sbjct: 236  GRMETDDEKRLRKKREFEKQRQDERHRHHLKESQNTILQKTQMLSTGKV-HGSIVGSRMG 294

Query: 1318 DRRAAPLLSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRFTRYTITSL 1139
            +R+A P LSGERIENRLKKPTTFLCKLKFRNELPD SAQPKLM+L+K+KD +TRYTITSL
Sbjct: 295  ERKATPFLSGERIENRLKKPTTFLCKLKFRNELPDTSAQPKLMSLRKEKDHYTRYTITSL 354

Query: 1138 EKNYKPQLHVEXXXXXXXXXXXLSVYNPPNARQXXXXXXXXXXXXXEVVTPVKKDG-IKR 962
            EK YKPQL+VE           LSVYNP + R               + TPVKKDG IKR
Sbjct: 355  EKTYKPQLYVEPDLGIPLDLLDLSVYNPSSVRMPLAPEDEELLRDDVLKTPVKKDGGIKR 414

Query: 961  KERPTDEGVSWLVKTQYISPLSMESTRQSLTEKQAKELREMKGGRNILENLNDRERQIKD 782
            KERPTD+GV+WLVKTQYISPLS+ES +QSLTEKQAKELREMKGGRNILENLN+RERQIK+
Sbjct: 415  KERPTDKGVAWLVKTQYISPLSIESAKQSLTEKQAKELREMKGGRNILENLNNRERQIKE 474

Query: 781  IEASFGACKLRPIHATNKNLQPVEIMPLLPDFERYDDQFVVASFDGAPTADSEIFSKMDK 602
            IEASF ACK RPIHATNKNL PVE++PLLPDF+RYDD FVV +FD APTADSE F+K+D+
Sbjct: 475  IEASFEACKSRPIHATNKNLYPVEVLPLLPDFDRYDDPFVVVAFDSAPTADSETFNKLDQ 534

Query: 601  SVRDAHESQAIVKSFVATGLDPANPEKFLAYMVPSVNELSKDIYNENEDVLFSWVREYHW 422
            S+RDAHESQAI+KS++AT  DP+ PEKFLAYMVPS +ELSKDIY+E EDV +SWVREYHW
Sbjct: 535  SIRDAHESQAIMKSYMATSSDPSKPEKFLAYMVPSPDELSKDIYDEQEDVSYSWVREYHW 594

Query: 421  DVRGD------------DAXXARYVPLPTKLNLRKKRAIEGRSSDEVEHFPIPSSITVRR 278
            DVRGD            D   ARYVPLPTKL LRKKRA EGRSSDEVEHFP P+ +TVRR
Sbjct: 595  DVRGDNVDDPTTYLVSFDDAEARYVPLPTKLVLRKKRAKEGRSSDEVEHFPAPARVTVRR 654

Query: 277  RANVAAIELKEPGAYXXXXXXXXXXKTGMLDSQDGIERSHGGLRHQEPYQSSGEEDDMYD 98
            R  VA +E+K+PG Y               D +DGI RSH   RHQ+  Q SG ED+M D
Sbjct: 655  RPTVATLEVKDPGIYSNSKRGS--------DIEDGIGRSHKHDRHQDMDQFSGAEDEMSD 706


>gb|KHF99389.1| RNA polymerase II-associated factor 1 [Gossypium arboreum]
          Length = 673

 Score =  627 bits (1616), Expect = e-176
 Identities = 338/542 (62%), Positives = 395/542 (72%), Gaps = 21/542 (3%)
 Frame = -1

Query: 1660 PPPGVTKDAEGRDFGLSDRDKRVSKEVS---RRDHGHS------KQQRPPVPPPGVTKVN 1508
            PPP   K++ G D  LS+R K  +++ S   RR+HGHS      ++ +P VPP  V   N
Sbjct: 145  PPPPPPKESSG-DKRLSERSKVGNRDFSGSGRREHGHSNHRIGGREHKPMVPP--VKNPN 201

Query: 1507 GGSGMVXXXXXXXXXXXXXXXXXRQEEKHRQQIKESQNVVMQKSQMMASGKGGHGSMIGS 1328
              +G V                 RQEE HRQQ+KESQ     K+Q+M+S K  HGSMIGS
Sbjct: 202  FHAGRVETEEERRLRKKRDFEKQRQEENHRQQMKESQ-----KAQLMSSSKA-HGSMIGS 255

Query: 1327 RMGDRRAAPLLSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRFTRYTI 1148
            RMGDRRA P LSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRFT+YTI
Sbjct: 256  RMGDRRATPFLSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRFTKYTI 315

Query: 1147 TSLEKNYKPQLHVEXXXXXXXXXXXLSVYNPPNARQXXXXXXXXXXXXXEVVTPVKKDGI 968
            TSLEK YKP+L VE           LSVYNPP+ R                +TP+KKDGI
Sbjct: 316  TSLEKMYKPKLFVEPDLGIPLDLLDLSVYNPPSVRPPLPPEDEELLHDDVAITPIKKDGI 375

Query: 967  KRKERPTDEGVSWLVKTQYISPLSMESTRQSLTEKQAKELREMKGGRNILENLNDRERQI 788
            +RKERPTD+GVSWLVKTQYISPL+MES +QSLTEKQAKELRE+KGGRN+LENLN+RERQI
Sbjct: 376  RRKERPTDKGVSWLVKTQYISPLNMESMKQSLTEKQAKELRELKGGRNLLENLNNRERQI 435

Query: 787  KDIEASFGACKLRPIHATNKNLQPVEIMPLLPDFERYDDQFVVASFDGAPTADSEIFSKM 608
            K+IEASF   KLRP+HATNKNL+P+E+MPLLPDF+R++DQFV+ +FDGAPTADSEIFSK+
Sbjct: 436  KEIEASFEESKLRPVHATNKNLEPIEVMPLLPDFDRHNDQFVMVAFDGAPTADSEIFSKL 495

Query: 607  DKSVRDAHESQAIVKSFVATGLDPANPEKFLAYMVPSVNELSKDIYNENEDVLFSWVREY 428
              SVRD HES+AI+KS+VA   DPANP+KFLAYMVPS++ELSKD+Y+E ED+ +SWVREY
Sbjct: 496  HGSVRDEHESRAIMKSYVAPSSDPANPDKFLAYMVPSLDELSKDMYDELEDISYSWVREY 555

Query: 427  HWDVRGDDA------------XXARYVPLPTKLNLRKKRAIEGRSSDEVEHFPIPSSITV 284
            HWDVRGD A              ARYVPLPTKLNLRKKRA EGRS DE+EHFPIPS ITV
Sbjct: 556  HWDVRGDGANDPTTYLVSFNEGDARYVPLPTKLNLRKKRAREGRSGDEIEHFPIPSRITV 615

Query: 283  RRRANVAAIELKEPGAYXXXXXXXXXXKTGMLDSQDGIERSHGGLRHQEPYQSSGEEDDM 104
            RRR+  AAIEL+EP  Y           +  LD++DG+ R+    RHQ+  Q SG EDD 
Sbjct: 616  RRRSTAAAIELQEPEVY----SNTRDSNSRRLDAEDGVGRTRKLARHQDVGQYSGHEDDF 671

Query: 103  YD 98
             D
Sbjct: 672  SD 673


>ref|XP_008228451.1| PREDICTED: bromodomain-containing protein 4 [Prunus mume]
          Length = 658

 Score =  626 bits (1614), Expect = e-176
 Identities = 332/523 (63%), Positives = 385/523 (73%), Gaps = 21/523 (4%)
 Frame = -1

Query: 1603 DKRVSKEVS---RRDHGH------SKQQRPPVPPPGVTKVNGGSGMVXXXXXXXXXXXXX 1451
            DK  S+EVS   RR+HGH       KQ +PPVP   V K NG  G V             
Sbjct: 139  DKGASREVSVSGRREHGHLNHGVAQKQHKPPVPSMPVKKANGPPGRVETEEERRLRKKRE 198

Query: 1450 XXXXRQEEKHRQQIKESQNVVMQKSQMMASGKGGHGSMIGSRMGDRRAAPLLSGERIENR 1271
                RQEEKHRQQ+K+SQN V+QK+QM++SGKG HGS+ GSRMG+RRA P LS ER ENR
Sbjct: 199  FEKQRQEEKHRQQLKDSQNSVLQKTQMLSSGKG-HGSIAGSRMGERRATPFLSSERTENR 257

Query: 1270 LKKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRFTRYTITSLEKNYKPQLHVEXXXXX 1091
            LKKPTTF+CKLKFRNELPDPSAQPKLM+LKKDKD++T+YTITSLEK YKP+L VE     
Sbjct: 258  LKKPTTFVCKLKFRNELPDPSAQPKLMSLKKDKDQYTKYTITSLEKTYKPKLFVEPDLGI 317

Query: 1090 XXXXXXLSVYNPPNARQXXXXXXXXXXXXXEVVTPVKKDGIKRKERPTDEGVSWLVKTQY 911
                  LSVYNPP+ R                 TPVK +GI+RKERPTD+GV+WLVKTQY
Sbjct: 318  PLDLLDLSVYNPPSVRPPLALEDEELLRDDVAATPVKNNGIRRKERPTDKGVAWLVKTQY 377

Query: 910  ISPLSMESTRQSLTEKQAKELREMKGGRNILENLNDRERQIKDIEASFGACKLRPIHATN 731
            ISPLSM+S RQSLTEKQAKELREMKGGRNIL NLNDRERQIK+IEASF ACK RP+HATN
Sbjct: 378  ISPLSMDSARQSLTEKQAKELREMKGGRNILNNLNDRERQIKEIEASFEACKSRPVHATN 437

Query: 730  KNLQPVEIMPLLPDFERYDDQFVVASFDGAPTADSEIFSKMDKSVRDAHESQAIVKSFVA 551
            KNL PVE++PLLPDFERY+DQFV+A+FDGAPTADSEI+SK+D+S  DA+ES+AI+KS+  
Sbjct: 438  KNLYPVEVLPLLPDFERYEDQFVLAAFDGAPTADSEIYSKLDQSGHDAYESRAIMKSYKV 497

Query: 550  TGLDPANPEKFLAYMVPSVNELSKDIYNENEDVLFSWVREYHWDVRGDDA---------- 401
            TG DPANPEKFLAYMVPS NELSKD Y+E+EDV +SWVREYH+DVRGDD           
Sbjct: 498  TGADPANPEKFLAYMVPSPNELSKDPYDESEDVSYSWVREYHYDVRGDDVHDPTTYLVSF 557

Query: 400  --XXARYVPLPTKLNLRKKRAIEGRSSDEVEHFPIPSSITVRRRANVAAIELKEPGAYXX 227
                ARY PLPTKL LRKKR+ EG++SDEVEHFP PS +TVR+R+ VAAIELK+ G Y  
Sbjct: 558  DEEEARYAPLPTKLILRKKRSKEGKTSDEVEHFPAPSRVTVRQRSTVAAIELKDSGDY-- 615

Query: 226  XXXXXXXXKTGMLDSQDGIERSHGGLRHQEPYQSSGEEDDMYD 98
                    KT   D +D +ER     RHQ+  + SG EDD+ D
Sbjct: 616  SRGSVSNLKTRRFDVEDTLERPRKIARHQDIDEYSGAEDDLSD 658


>ref|XP_006583048.1| PREDICTED: RNA polymerase II-associated factor 1 homolog isoform X1
            [Glycine max] gi|571464391|ref|XP_006583049.1| PREDICTED:
            RNA polymerase II-associated factor 1 homolog isoform X2
            [Glycine max] gi|947098717|gb|KRH47209.1| hypothetical
            protein GLYMA_07G015500 [Glycine max]
            gi|947098718|gb|KRH47210.1| hypothetical protein
            GLYMA_07G015500 [Glycine max]
          Length = 659

 Score =  625 bits (1611), Expect = e-176
 Identities = 333/534 (62%), Positives = 386/534 (72%), Gaps = 13/534 (2%)
 Frame = -1

Query: 1660 PPPGVTKDAEGRDFGLSDRDKRVSKEVSRRDHGHSKQQRPPVPPPGVTKVNGGS-GMVXX 1484
            PPP VT++ E R F       R  +E    +HG + +Q    PP  V K+N G  G    
Sbjct: 131  PPPAVTQNNEERHFKEPSTSGR--REYEHSNHGIAHKQHKQQPPVPVKKMNNGPPGRAET 188

Query: 1483 XXXXXXXXXXXXXXXRQEEKHRQQIKESQNVVMQKSQMMASGKGGHGSMIGSRMGDRRAA 1304
                           RQEEKHRQQ+KESQN V+QK+ M++SGKG HG + GSRMG+RR+ 
Sbjct: 189  DEEKRLRKKREFEKQRQEEKHRQQLKESQNTVLQKTHMLSSGKG-HGMIAGSRMGERRST 247

Query: 1303 PLLSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRFTRYTITSLEKNYK 1124
            PLL  ER+ENRLKKPTTFLCKLKFRNELPDPSAQPKLMA KKDKD++ +YTITSLEK YK
Sbjct: 248  PLLGAERVENRLKKPTTFLCKLKFRNELPDPSAQPKLMASKKDKDQYAKYTITSLEKMYK 307

Query: 1123 PQLHVEXXXXXXXXXXXLSVYNPPNARQXXXXXXXXXXXXXEVVTPVKKDGIKRKERPTD 944
            P+L VE           LSVYNPP+ R              E VTP+KKDGIKRKERPTD
Sbjct: 308  PKLFVEPDLGIPLDLLDLSVYNPPSVRPPLAPEDKELLRDDEAVTPIKKDGIKRKERPTD 367

Query: 943  EGVSWLVKTQYISPLSMESTRQSLTEKQAKELREMKGGRNILENLNDRERQIKDIEASFG 764
            +GV+WLVKTQYISPLSMEST+QSLTEKQAKELREMKGGR IL+NLN RERQI++IEASF 
Sbjct: 368  KGVAWLVKTQYISPLSMESTKQSLTEKQAKELREMKGGRGILDNLNSRERQIREIEASFE 427

Query: 763  ACKLRPIHATNKNLQPVEIMPLLPDFERYDDQFVVASFDGAPTADSEIFSKMDKSVRDAH 584
            A K  P+HATNK+L PVE+MPLLPDF+RYDDQFVVA+FD APTADSE+ +KMDKSVRDA 
Sbjct: 428  AAKSDPVHATNKDLYPVEVMPLLPDFDRYDDQFVVAAFDNAPTADSEMHAKMDKSVRDAF 487

Query: 583  ESQAIVKSFVATGLDPANPEKFLAYMVPSVNELSKDIYNENEDVLFSWVREYHWDVRGDD 404
            ES+A++KS+VAT  DPANPEKFLAYMVP+  ELSKDIY+ENEDV +SW+REYHWDVRGDD
Sbjct: 488  ESKAVMKSYVATSSDPANPEKFLAYMVPAPGELSKDIYDENEDVSYSWIREYHWDVRGDD 547

Query: 403  A------------XXARYVPLPTKLNLRKKRAIEGRSSDEVEHFPIPSSITVRRRANVAA 260
            A              ARY+PLPTKL LRKKRA EGRS DEVE  P+P+ +TVRRR++VAA
Sbjct: 548  ADDPATFLVAFDESEARYLPLPTKLVLRKKRAKEGRSGDEVEQCPVPARVTVRRRSSVAA 607

Query: 259  IELKEPGAYXXXXXXXXXXKTGMLDSQDGIERSHGGLRHQEPYQSSGEEDDMYD 98
            IE K+ G Y          K G L+  DG+E  H G  HQ+ YQSSG ED M D
Sbjct: 608  IERKDSGVY--TSSKGNSSKRGGLEMDDGLEDQHRGAPHQDNYQSSGAEDYMSD 659


>ref|XP_009353546.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Pyrus x
            bretschneideri]
          Length = 710

 Score =  622 bits (1604), Expect = e-175
 Identities = 340/548 (62%), Positives = 397/548 (72%), Gaps = 27/548 (4%)
 Frame = -1

Query: 1660 PPPGVTKDA--EGRDFGLSDR--DKRVSKEVS---RRDHGH------SKQQRPPVPPPGV 1520
            PPPG       + +D G+  R  DK  S+E S   RR+HGH       KQQ+PPVP   V
Sbjct: 167  PPPGSPPPPPPQSKDSGVDRRSHDKGASREASVSRRREHGHLNHGVPPKQQKPPVPSVPV 226

Query: 1519 TKVNGGSGMVXXXXXXXXXXXXXXXXXRQEEKHRQQIKESQNVVMQKSQMMASGKGGHGS 1340
             K NG  G V                 RQEEKHRQQ+K+SQN V+QK+QM++SGKG HGS
Sbjct: 227  KKANGPPGRVETEEERRLRKKREFEKQRQEEKHRQQLKDSQNSVLQKTQMLSSGKG-HGS 285

Query: 1339 MIGSRMGDRRAAPLLSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRFT 1160
            ++GSRMG+RRA P LSGER ENRLKKPTTF+CKLKFRNELPDPSAQPKLM+LKK+KD++T
Sbjct: 286  IVGSRMGERRATPFLSGERTENRLKKPTTFVCKLKFRNELPDPSAQPKLMSLKKEKDQYT 345

Query: 1159 RYTITSLEKNYKPQLHVEXXXXXXXXXXXLSVYNPP--NARQXXXXXXXXXXXXXEVVTP 986
            +YTITSLEK YKP+L VE           LSVYNPP  + R                VTP
Sbjct: 346  KYTITSLEKTYKPKLFVEPDLGIPLDLLDLSVYNPPPPSVRLPLAVEDEELLRDDVAVTP 405

Query: 985  VKKDGIKRKERPTDEGVSWLVKTQYISPLSMESTRQSLTEKQAKELREMKGGRNILENLN 806
            VKKDGI+RKERPTD+GV+WLVKTQYISPLSMES RQSLTEKQAKELREMKG RNILENLN
Sbjct: 406  VKKDGIRRKERPTDKGVAWLVKTQYISPLSMESARQSLTEKQAKELREMKG-RNILENLN 464

Query: 805  DRERQIKDIEASFGACKLRPIHATNKNLQPVEIMPLLPDFERYDDQFVVASFDGAPTADS 626
            DRERQIK+IEASF ACK RP+HATNKNL   E++PLLPDF+RYDDQFV+A+FDGAPTADS
Sbjct: 465  DRERQIKEIEASFEACKSRPVHATNKNLYAEEVLPLLPDFDRYDDQFVLAAFDGAPTADS 524

Query: 625  EIFSKMDKSVRDAHESQAIVKSFVATGLDPANPEKFLAYMVPSVNELSKDIYNENEDVLF 446
            EI+SK+D+S  DA+ES+AI+KS+  TG+DPANPEKFLAYMVPS NELSKD Y+E+EDV +
Sbjct: 525  EIYSKLDQSGHDAYESRAIMKSYKVTGVDPANPEKFLAYMVPSPNELSKDPYDESEDVSY 584

Query: 445  SWVREYHWDVRGDDA------------XXARYVPLPTKLNLRKKRAIEGRSSDEVEHFPI 302
            SWVREYH+DVRGDD               ARY PLPTKL LRKKR+ EG++SDEVEHFP 
Sbjct: 585  SWVREYHYDVRGDDVHDPTTYLVSFDDDEARYAPLPTKLVLRKKRSKEGKTSDEVEHFPA 644

Query: 301  PSSITVRRRANVAAIELKEPGAYXXXXXXXXXXKTGMLDSQDGIERSHGGLRHQEPYQSS 122
            P+ +TVRRRA VA+IELK+ G Y          KT   D +D +ER     RHQ+  + S
Sbjct: 645  PARVTVRRRATVASIELKDAGDY--STGSVSKLKTRGYDVEDTLERPQKIARHQDLDEYS 702

Query: 121  GEEDDMYD 98
            G  DD+ D
Sbjct: 703  GGNDDLSD 710


>ref|XP_014516734.1| PREDICTED: protein PAF1 homolog [Vigna radiata var. radiata]
          Length = 660

 Score =  621 bits (1602), Expect = e-175
 Identities = 327/531 (61%), Positives = 382/531 (71%), Gaps = 12/531 (2%)
 Frame = -1

Query: 1660 PPPGVTKDAEGRDFGLSDRDKRVSKEVSRRDHGHSKQQRPPVPPPGVTKVNGGSGMVXXX 1481
            PPP  T++ E R F   D      +E    +HG + +Q    PP    KVNG  G     
Sbjct: 133  PPPPATQNNEDRRF--KDPSTSGRREYDPSNHGIAHKQHKHQPPVPAKKVNGPPGRTETE 190

Query: 1480 XXXXXXXXXXXXXXRQEEKHRQQIKESQNVVMQKSQMMASGKGGHGSMIGSRMGDRRAAP 1301
                          RQEEKHRQQ+KESQN V+QK+ +++SGKG HG + GSR+G+RR+ P
Sbjct: 191  EEKRLRKKREFEKQRQEEKHRQQLKESQNTVLQKTHLLSSGKG-HGMIAGSRLGERRSTP 249

Query: 1300 LLSGERIENRLKKPTTFLCKLKFRNELPDPSAQPKLMALKKDKDRFTRYTITSLEKNYKP 1121
            LLS ER+ENRLKKPTTFLCKLKFRNELPDPSAQPKLMA KKDKD++ +YTITSLEK YKP
Sbjct: 250  LLSAERVENRLKKPTTFLCKLKFRNELPDPSAQPKLMAFKKDKDQYAKYTITSLEKMYKP 309

Query: 1120 QLHVEXXXXXXXXXXXLSVYNPPNARQXXXXXXXXXXXXXEVVTPVKKDGIKRKERPTDE 941
            +L VE           LSVYNPP+ RQ             E  TP+KKDGIKRKERPTD+
Sbjct: 310  KLFVEPDLGIPLDLLDLSVYNPPSVRQPLAPEDEELLRDDEAATPIKKDGIKRKERPTDK 369

Query: 940  GVSWLVKTQYISPLSMESTRQSLTEKQAKELREMKGGRNILENLNDRERQIKDIEASFGA 761
            GV+WLVKTQYISPLSMEST+QSLTEKQAKELREMKGGR IL+NLN RERQI++IEASF A
Sbjct: 370  GVAWLVKTQYISPLSMESTKQSLTEKQAKELREMKGGRGILDNLNSRERQIREIEASFEA 429

Query: 760  CKLRPIHATNKNLQPVEIMPLLPDFERYDDQFVVASFDGAPTADSEIFSKMDKSVRDAHE 581
             K  P+HATNK+L PVE+MPLLPDF+RYDDQFVVA+FD APTADSE+++K+DKSVRDA E
Sbjct: 430  AKSDPVHATNKDLYPVEVMPLLPDFDRYDDQFVVAAFDNAPTADSEMYAKLDKSVRDAFE 489

Query: 580  SQAIVKSFVATGLDPANPEKFLAYMVPSVNELSKDIYNENEDVLFSWVREYHWDVRGDDA 401
            S+A++KS+VAT  DPANPEKFLAYM P+  ELSKDIY+ENEDV +SW+REYHWDVRGDDA
Sbjct: 490  SKAVMKSYVATSSDPANPEKFLAYMAPAPGELSKDIYDENEDVSYSWIREYHWDVRGDDA 549

Query: 400  ------------XXARYVPLPTKLNLRKKRAIEGRSSDEVEHFPIPSSITVRRRANVAAI 257
                          ARY+PLPTKL LRKKRA EGRS +EVE  P+PS +TVRRR++VAAI
Sbjct: 550  DDPTTFLVAFDDSEARYLPLPTKLVLRKKRAKEGRSGEEVEQCPVPSRVTVRRRSSVAAI 609

Query: 256  ELKEPGAYXXXXXXXXXXKTGMLDSQDGIERSHGGLRHQEPYQSSGEEDDM 104
            E K+   Y          K   LD  DG+E  H G  HQ+ YQSSG ED M
Sbjct: 610  ERKDTEVY--TSSRGNSSKRARLDMDDGLEHQHRGASHQDNYQSSGAEDYM 658