BLASTX nr result
ID: Zanthoxylum22_contig00009196
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zanthoxylum22_contig00009196
(2190 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KDO49412.1| hypothetical protein CISIN_1g007404mg [Citrus sin... 802 0.0
ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-... 801 0.0
ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citr... 797 0.0
gb|KDO49416.1| hypothetical protein CISIN_1g007404mg [Citrus sin... 743 0.0
ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-... 742 0.0
ref|XP_012434812.1| PREDICTED: RNA polymerase sigma factor sigB ... 695 0.0
ref|XP_012070322.1| PREDICTED: RNA polymerase sigma factor sigB ... 695 0.0
ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cac... 695 0.0
gb|KHG18437.1| RNA polymerase sigma factor rpoD [Gossypium arbor... 694 0.0
ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative ... 669 0.0
ref|XP_010052665.1| PREDICTED: RNA polymerase sigma factor sigB ... 666 0.0
ref|XP_010661180.1| PREDICTED: RNA polymerase sigma factor sigB ... 666 0.0
ref|XP_002319746.2| SIGMA FACTOR B family protein [Populus trich... 660 0.0
ref|XP_011013765.1| PREDICTED: RNA polymerase sigma factor sigB-... 655 0.0
ref|XP_011004934.1| PREDICTED: RNA polymerase sigma factor sigB-... 655 0.0
ref|XP_010251515.1| PREDICTED: RNA polymerase sigma factor sigB-... 643 0.0
ref|XP_010278441.1| PREDICTED: RNA polymerase sigma factor sigB-... 640 e-180
ref|XP_010052664.1| PREDICTED: RNA polymerase sigma factor sigB ... 637 e-179
ref|XP_011086680.1| PREDICTED: RNA polymerase sigma factor sigB ... 636 e-179
ref|XP_010097670.1| RNA polymerase sigma factor rpoD [Morus nota... 636 e-179
>gb|KDO49412.1| hypothetical protein CISIN_1g007404mg [Citrus sinensis]
Length = 605
Score = 802 bits (2072), Expect = 0.0
Identities = 427/587 (72%), Positives = 454/587 (77%), Gaps = 1/587 (0%)
Frame = -3
Query: 1864 NLNMSCLLPQFKCQPDTFSIHFRNLXXXXXXXXXXXXPSKSKEPICFRTQCILXXXXXXX 1685
N NMSCLLPQFKCQPDTFSIHFR L SKSKEPICFRT C+L
Sbjct: 21 NKNMSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHP---SKSKEPICFRTHCVLSTTSPST 77
Query: 1684 XXXXXV-LDVEKLRLHSLEADSNAVAANRQWTYFGSVGPPTEESFGASLATETLTXXXXX 1508
LDVEKLRL SLEA SNAVAANRQWTYFG+VGP TEE+ G SLATETLT
Sbjct: 78 STAMTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAV 137
Query: 1507 XXXXXXXXXXXXXXXXXXXXXXXXXANNQRXXXXXXXXXXXXXADNNTSMWAQLTERERA 1328
N+ AD NTSMWAQLTERERA
Sbjct: 138 IAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERA 197
Query: 1327 SIIGDSMTVETGLEEENTEQQPLKAAVDLEPTHXXXXXXXXXXXXSIAVRSRRQTERKVK 1148
SIIGDS+ VE EEE +EQQPL + DLEPTH SIAVRSRRQTERK +
Sbjct: 198 SIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKAR 257
Query: 1147 RTRAAEKAAANIVSIKPGSTGRRKRTSVQDIDYSDPLRYXXXXXXXXXXXXXXXXLQLSA 968
RTRAAEKAAAN++S+K GST RRKR SVQ++DYSDPLRY +QLSA
Sbjct: 258 RTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 317
Query: 967 GIQDLLKLEGLHEVLSVRCGGSPTFAQWAAAAGVDQKELRRRFNYGLLCKDRMIKSNIRL 788
GIQDLLKLEGL EVLS RCGGSPTFAQWAAAAGVDQ+ELRRR NYG+LCKD+MI SNIRL
Sbjct: 318 GIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRL 377
Query: 787 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDALKGFRFSTYAHWWIKQAVRKSLTDQ 608
VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA KGF+FSTYAHWWIKQAVRKSL+DQ
Sbjct: 378 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 437
Query: 607 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDNEEVAEAAGLSMKRLQAVLLIPKAPKS 428
SRTIRLPFHMVEATYRVKEARKQLYSENGRHP+NEEVAEA GLSMKRL AVLL PKAP+S
Sbjct: 438 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRS 497
Query: 427 LDQKIGINQNLKLSEVTADPEAESAEEMLIKKFMKKDLEKVLDTLNPREEQVIRWRFGLD 248
LDQKIGINQNLK SEV ADPEAE+AE++LIKKFMK+DLEKVLDTLNPRE QV+RWRFGL+
Sbjct: 498 LDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLE 557
Query: 247 DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 107
DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT
Sbjct: 558 DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604
>ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Citrus
sinensis]
Length = 605
Score = 801 bits (2069), Expect = 0.0
Identities = 426/587 (72%), Positives = 453/587 (77%), Gaps = 1/587 (0%)
Frame = -3
Query: 1864 NLNMSCLLPQFKCQPDTFSIHFRNLXXXXXXXXXXXXPSKSKEPICFRTQCILXXXXXXX 1685
N NMSCLLPQFKCQPDTFSIHFR L SKSKEPICFRT C+L
Sbjct: 21 NKNMSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHP---SKSKEPICFRTHCVLSTTSPST 77
Query: 1684 XXXXXV-LDVEKLRLHSLEADSNAVAANRQWTYFGSVGPPTEESFGASLATETLTXXXXX 1508
LDVEKLRL SLEA SNAVAANRQWTYFG+VGP TEE+ G SLATETLT
Sbjct: 78 STAMTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAV 137
Query: 1507 XXXXXXXXXXXXXXXXXXXXXXXXXANNQRXXXXXXXXXXXXXADNNTSMWAQLTERERA 1328
N+ AD NTSMWAQLTERERA
Sbjct: 138 IAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISLSADTNTSMWAQLTERERA 197
Query: 1327 SIIGDSMTVETGLEEENTEQQPLKAAVDLEPTHXXXXXXXXXXXXSIAVRSRRQTERKVK 1148
SIIGDS+ VE EEE +EQQPL + DLEPTH SIAVRSRRQTERK +
Sbjct: 198 SIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKAR 257
Query: 1147 RTRAAEKAAANIVSIKPGSTGRRKRTSVQDIDYSDPLRYXXXXXXXXXXXXXXXXLQLSA 968
RTRAAEKAAAN++S+K GST RRKR SVQ++DYSDPLRY +QLSA
Sbjct: 258 RTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 317
Query: 967 GIQDLLKLEGLHEVLSVRCGGSPTFAQWAAAAGVDQKELRRRFNYGLLCKDRMIKSNIRL 788
GIQDLLKLEGL EVLS RCGGSPTFAQWAAAAGVDQ+ELRRR NYG+LCKD+MI SNIRL
Sbjct: 318 GIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRL 377
Query: 787 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDALKGFRFSTYAHWWIKQAVRKSLTDQ 608
VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA KGF+FSTYAHWWIKQAVRKSL+DQ
Sbjct: 378 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 437
Query: 607 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDNEEVAEAAGLSMKRLQAVLLIPKAPKS 428
SRTIRLPFHMVEATYRVKEARKQLYSENGRHP+NEEVAEA GLSMKRL AVLL PKAP+S
Sbjct: 438 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLTPKAPRS 497
Query: 427 LDQKIGINQNLKLSEVTADPEAESAEEMLIKKFMKKDLEKVLDTLNPREEQVIRWRFGLD 248
LDQK GINQNLK SEV ADPEAE+AE++LIKKFMK+DLEKVLDTLNPRE QV+RWRFGL+
Sbjct: 498 LDQKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLE 557
Query: 247 DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 107
DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT
Sbjct: 558 DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604
>ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citrus clementina]
gi|557539534|gb|ESR50578.1| hypothetical protein
CICLE_v10030998mg [Citrus clementina]
Length = 605
Score = 797 bits (2058), Expect = 0.0
Identities = 424/587 (72%), Positives = 453/587 (77%), Gaps = 1/587 (0%)
Frame = -3
Query: 1864 NLNMSCLLPQFKCQPDTFSIHFRNLXXXXXXXXXXXXPSKSKEPICFRTQCILXXXXXXX 1685
N NMSCLLPQFKCQPDTFSIHFR L SKSKEPICFRT C+L
Sbjct: 21 NKNMSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHP---SKSKEPICFRTHCVLSTTSPST 77
Query: 1684 XXXXXV-LDVEKLRLHSLEADSNAVAANRQWTYFGSVGPPTEESFGASLATETLTXXXXX 1508
LDVEKLRL SLEA SNAVAANRQWTYFG+VGP TEE+ G SLATETLT
Sbjct: 78 STAMTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAV 137
Query: 1507 XXXXXXXXXXXXXXXXXXXXXXXXXANNQRXXXXXXXXXXXXXADNNTSMWAQLTERERA 1328
N+ AD +TSMWAQLTERERA
Sbjct: 138 IAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISLSADTSTSMWAQLTERERA 197
Query: 1327 SIIGDSMTVETGLEEENTEQQPLKAAVDLEPTHXXXXXXXXXXXXSIAVRSRRQTERKVK 1148
SIIGDS+ VE EEE +EQQPL + DLEPTH SIAVRSRRQTERK +
Sbjct: 198 SIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKAR 257
Query: 1147 RTRAAEKAAANIVSIKPGSTGRRKRTSVQDIDYSDPLRYXXXXXXXXXXXXXXXXLQLSA 968
RTRAAEKAAAN++S+K GST RRKR SVQ++DYSDPLRY +QLSA
Sbjct: 258 RTRAAEKAAANVMSVKSGSTTRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 317
Query: 967 GIQDLLKLEGLHEVLSVRCGGSPTFAQWAAAAGVDQKELRRRFNYGLLCKDRMIKSNIRL 788
GIQDLLKLEGL EVLS RCGGSPTFAQWAAAAGVDQ+ELRRR NYG+LCKD+MI SNIRL
Sbjct: 318 GIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRL 377
Query: 787 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDALKGFRFSTYAHWWIKQAVRKSLTDQ 608
VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA KGF+FSTYAHWWIKQAVRKSL+DQ
Sbjct: 378 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 437
Query: 607 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDNEEVAEAAGLSMKRLQAVLLIPKAPKS 428
SRTIRLPFHMVEATYRVKEARKQLYSENGRHP+NEEVA+A GLSMKRL AVLL PKAP+S
Sbjct: 438 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAKATGLSMKRLHAVLLAPKAPRS 497
Query: 427 LDQKIGINQNLKLSEVTADPEAESAEEMLIKKFMKKDLEKVLDTLNPREEQVIRWRFGLD 248
LDQK GINQNLK SEV ADPEAE+AE++LIKKFMK+DLEKVLDTLNPRE QV+RWRFGL+
Sbjct: 498 LDQKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLE 557
Query: 247 DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 107
DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT
Sbjct: 558 DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604
>gb|KDO49416.1| hypothetical protein CISIN_1g007404mg [Citrus sinensis]
Length = 525
Score = 743 bits (1918), Expect = 0.0
Identities = 391/520 (75%), Positives = 417/520 (80%)
Frame = -3
Query: 1666 LDVEKLRLHSLEADSNAVAANRQWTYFGSVGPPTEESFGASLATETLTXXXXXXXXXXXX 1487
LDVEKLRL SLEA SNAVAANRQWTYFG+VGP TEE+ G SLATETLT
Sbjct: 5 LDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAASAE 64
Query: 1486 XXXXXXXXXXXXXXXXXXANNQRXXXXXXXXXXXXXADNNTSMWAQLTERERASIIGDSM 1307
N+ AD NTSMWAQLTERERASIIGDS+
Sbjct: 65 AVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIGDSV 124
Query: 1306 TVETGLEEENTEQQPLKAAVDLEPTHXXXXXXXXXXXXSIAVRSRRQTERKVKRTRAAEK 1127
VE EEE +EQQPL + DLEPTH SIAVRSRRQTERK +RTRAAEK
Sbjct: 125 IVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEK 184
Query: 1126 AAANIVSIKPGSTGRRKRTSVQDIDYSDPLRYXXXXXXXXXXXXXXXXLQLSAGIQDLLK 947
AAAN++S+K GST RRKR SVQ++DYSDPLRY +QLSAGIQDLLK
Sbjct: 185 AAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLK 244
Query: 946 LEGLHEVLSVRCGGSPTFAQWAAAAGVDQKELRRRFNYGLLCKDRMIKSNIRLVISIAKN 767
LEGL EVLS RCGGSPTFAQWAAAAGVDQ+ELRRR NYG+LCKD+MI SNIRLVISIAKN
Sbjct: 245 LEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKN 304
Query: 766 YQGAGMNLQDLVQEGCRGLVRGAEKFDALKGFRFSTYAHWWIKQAVRKSLTDQSRTIRLP 587
YQGAGMNLQDLVQEGCRGLVRGAEKFDA KGF+FSTYAHWWIKQAVRKSL+DQSRTIRLP
Sbjct: 305 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 364
Query: 586 FHMVEATYRVKEARKQLYSENGRHPDNEEVAEAAGLSMKRLQAVLLIPKAPKSLDQKIGI 407
FHMVEATYRVKEARKQLYSENGRHP+NEEVAEA GLSMKRL AVLL PKAP+SLDQKIGI
Sbjct: 365 FHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGI 424
Query: 406 NQNLKLSEVTADPEAESAEEMLIKKFMKKDLEKVLDTLNPREEQVIRWRFGLDDGRMKTL 227
NQNLK SEV ADPEAE+AE++LIKKFMK+DLEKVLDTLNPRE QV+RWRFGL+DGRMKTL
Sbjct: 425 NQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTL 484
Query: 226 QEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 107
QEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT
Sbjct: 485 QEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 524
>ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X2 [Citrus
sinensis]
Length = 525
Score = 742 bits (1915), Expect = 0.0
Identities = 390/520 (75%), Positives = 416/520 (80%)
Frame = -3
Query: 1666 LDVEKLRLHSLEADSNAVAANRQWTYFGSVGPPTEESFGASLATETLTXXXXXXXXXXXX 1487
LDVEKLRL SLEA SNAVAANRQWTYFG+VGP TEE+ G SLATETLT
Sbjct: 5 LDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAASAE 64
Query: 1486 XXXXXXXXXXXXXXXXXXANNQRXXXXXXXXXXXXXADNNTSMWAQLTERERASIIGDSM 1307
N+ AD NTSMWAQLTERERASIIGDS+
Sbjct: 65 AVALARAAVKVAKDAALMVNHHNSAKPKSKPAISLSADTNTSMWAQLTERERASIIGDSV 124
Query: 1306 TVETGLEEENTEQQPLKAAVDLEPTHXXXXXXXXXXXXSIAVRSRRQTERKVKRTRAAEK 1127
VE EEE +EQQPL + DLEPTH SIAVRSRRQTERK +RTRAAEK
Sbjct: 125 IVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEK 184
Query: 1126 AAANIVSIKPGSTGRRKRTSVQDIDYSDPLRYXXXXXXXXXXXXXXXXLQLSAGIQDLLK 947
AAAN++S+K GST RRKR SVQ++DYSDPLRY +QLSAGIQDLLK
Sbjct: 185 AAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLK 244
Query: 946 LEGLHEVLSVRCGGSPTFAQWAAAAGVDQKELRRRFNYGLLCKDRMIKSNIRLVISIAKN 767
LEGL EVLS RCGGSPTFAQWAAAAGVDQ+ELRRR NYG+LCKD+MI SNIRLVISIAKN
Sbjct: 245 LEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKN 304
Query: 766 YQGAGMNLQDLVQEGCRGLVRGAEKFDALKGFRFSTYAHWWIKQAVRKSLTDQSRTIRLP 587
YQGAGMNLQDLVQEGCRGLVRGAEKFDA KGF+FSTYAHWWIKQAVRKSL+DQSRTIRLP
Sbjct: 305 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 364
Query: 586 FHMVEATYRVKEARKQLYSENGRHPDNEEVAEAAGLSMKRLQAVLLIPKAPKSLDQKIGI 407
FHMVEATYRVKEARKQLYSENGRHP+NEEVAEA GLSMKRL AVLL PKAP+SLDQK GI
Sbjct: 365 FHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLTPKAPRSLDQKFGI 424
Query: 406 NQNLKLSEVTADPEAESAEEMLIKKFMKKDLEKVLDTLNPREEQVIRWRFGLDDGRMKTL 227
NQNLK SEV ADPEAE+AE++LIKKFMK+DLEKVLDTLNPRE QV+RWRFGL+DGRMKTL
Sbjct: 425 NQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTL 484
Query: 226 QEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 107
QEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT
Sbjct: 485 QEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 524
>ref|XP_012434812.1| PREDICTED: RNA polymerase sigma factor sigB [Gossypium raimondii]
gi|763778947|gb|KJB46070.1| hypothetical protein
B456_007G347300 [Gossypium raimondii]
Length = 578
Score = 695 bits (1794), Expect = 0.0
Identities = 374/584 (64%), Positives = 418/584 (71%), Gaps = 1/584 (0%)
Frame = -3
Query: 1855 MSCLLPQFKCQPDTFSIHFRNLXXXXXXXXXXXXPSKSKEPICFRTQCILXXXXXXXXXX 1676
MSCLLPQFKCQPDTFSI FR SK KE ICFR+QC+L
Sbjct: 1 MSCLLPQFKCQPDTFSIQFR---------AHHSHHSKHKESICFRSQCVLSTTSSTSMAT 51
Query: 1675 XXVLDVEKLRLHSLEADSNAVAANRQWTYFGSVGPPTEESFGASLATETL-TXXXXXXXX 1499
VLDVEKLRL S EA SN+V +R WTY G+ GPP+E SFGA+LATE L T
Sbjct: 52 TAVLDVEKLRLPSFEAHSNSVVTDRPWTYTGATGPPSEASFGATLATENLLTSDEAVIAA 111
Query: 1498 XXXXXXXXXXXXXXXXXXXXXXANNQRXXXXXXXXXXXXXADNNTSMWAQLTERERASII 1319
N D TS W TE ERA I+
Sbjct: 112 AAAEAVALARAAAKVAKDAAIMVKNHGSAKTEMKSPGSSATDTLTSKWGLFTEAERAGIV 171
Query: 1318 GDSMTVETGLEEENTEQQPLKAAVDLEPTHXXXXXXXXXXXXSIAVRSRRQTERKVKRTR 1139
GD ++ E LEE++ EQ K + +LEPT+ SIAVRS RQTERK KRTR
Sbjct: 172 GDYVSDELELEEDHLEQNSTKESDELEPTNEELKLLEEQLSRSIAVRSHRQTERKAKRTR 231
Query: 1138 AAEKAAANIVSIKPGSTGRRKRTSVQDIDYSDPLRYXXXXXXXXXXXXXXXXLQLSAGIQ 959
AAEKAA N+VS+K GST R++R ++QDIDYSDPLRY L+LS GIQ
Sbjct: 232 AAEKAATNVVSVKSGSTNRKRRGALQDIDYSDPLRYLRGTTNTSKLLTANEELELSEGIQ 291
Query: 958 DLLKLEGLHEVLSVRCGGSPTFAQWAAAAGVDQKELRRRFNYGLLCKDRMIKSNIRLVIS 779
DLLKLEGLHE L+ RCG PTFAQWAAAA VD+K LR R NYG +C D+MIKSNIRLVIS
Sbjct: 292 DLLKLEGLHEELAERCGRPPTFAQWAAAAEVDRKTLRERLNYGTICMDKMIKSNIRLVIS 351
Query: 778 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDALKGFRFSTYAHWWIKQAVRKSLTDQSRT 599
IAKNYQGAGMNLQDLVQEGCRGL+RGAEKFDA KGF+FSTYAHWWIKQAVRKSL+DQSRT
Sbjct: 352 IAKNYQGAGMNLQDLVQEGCRGLIRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 411
Query: 598 IRLPFHMVEATYRVKEARKQLYSENGRHPDNEEVAEAAGLSMKRLQAVLLIPKAPKSLDQ 419
IRLPFHMVEATYRVKEARKQL+SENGR PDN EVAEA GLSMKRL AVLL PKAP+SLDQ
Sbjct: 412 IRLPFHMVEATYRVKEARKQLFSENGRQPDNIEVAEATGLSMKRLTAVLLAPKAPRSLDQ 471
Query: 418 KIGINQNLKLSEVTADPEAESAEEMLIKKFMKKDLEKVLDTLNPREEQVIRWRFGLDDGR 239
KIGINQNLK SEV ADPEA+SAE++L+K+FMKKDLEKVLD+L+PRE QVIRWRFG++DGR
Sbjct: 472 KIGINQNLKPSEVIADPEADSAEDILLKQFMKKDLEKVLDSLSPRERQVIRWRFGMEDGR 531
Query: 238 MKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 107
+KTLQEIGE MGVSRERIRQIE AFRKLKNK+RTKHL QY ++
Sbjct: 532 VKTLQEIGESMGVSRERIRQIELCAFRKLKNKRRTKHLQQYLLS 575
>ref|XP_012070322.1| PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
gi|802585247|ref|XP_012070323.1| PREDICTED: RNA
polymerase sigma factor sigB [Jatropha curcas]
gi|643732514|gb|KDP39610.1| hypothetical protein
JCGZ_02630 [Jatropha curcas]
Length = 577
Score = 695 bits (1793), Expect = 0.0
Identities = 371/582 (63%), Positives = 420/582 (72%)
Frame = -3
Query: 1855 MSCLLPQFKCQPDTFSIHFRNLXXXXXXXXXXXXPSKSKEPICFRTQCILXXXXXXXXXX 1676
MSCLLPQFKCQPDTFSIHFR +KS+EP+CFR QCIL
Sbjct: 1 MSCLLPQFKCQPDTFSIHFRT---HYLQNSNFCQSAKSREPVCFRAQCILSTTSPSTSTA 57
Query: 1675 XXVLDVEKLRLHSLEADSNAVAANRQWTYFGSVGPPTEESFGASLATETLTXXXXXXXXX 1496
LD+EKLRL S EA +++ AN WTY GS+GPP +E+FG++LATETL
Sbjct: 58 V--LDLEKLRLPSFEAHPDSLVANSPWTYVGSIGPP-KETFGSTLATETLITGDDAVIAA 114
Query: 1495 XXXXXXXXXXXXXXXXXXXXXANNQRXXXXXXXXXXXXXADNNTSMWAQLTERERASIIG 1316
+ +S W Q TE +RA IIG
Sbjct: 115 AAAEAVALARAAAKVAKDAAILVKSFPSSEAESKLEIPSIADVSSRWPQFTETDRARIIG 174
Query: 1315 DSMTVETGLEEENTEQQPLKAAVDLEPTHXXXXXXXXXXXXSIAVRSRRQTERKVKRTRA 1136
DS+T ETG EE+ Q P K + LEPTH IAVRSRRQTERK +RTRA
Sbjct: 175 DSVTAETGSREEHPMQHPTKESDHLEPTHEELELLQKQLSEGIAVRSRRQTERKERRTRA 234
Query: 1135 AEKAAANIVSIKPGSTGRRKRTSVQDIDYSDPLRYXXXXXXXXXXXXXXXXLQLSAGIQD 956
AEKAAAN++S K GST ++KR +Q++DYSDPLRY L+LS GIQD
Sbjct: 235 AEKAAANVMSWKSGSTSKKKRGPLQEVDYSDPLRYLRGTTSTSKLLTATEELELSEGIQD 294
Query: 955 LLKLEGLHEVLSVRCGGSPTFAQWAAAAGVDQKELRRRFNYGLLCKDRMIKSNIRLVISI 776
LLKLE LHE L+ RCGG PTF QWAAAAGVDQK LR R NYG+ CKDRMIKSNIRLVISI
Sbjct: 295 LLKLERLHEELAERCGGQPTFQQWAAAAGVDQKTLRTRLNYGISCKDRMIKSNIRLVISI 354
Query: 775 AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDALKGFRFSTYAHWWIKQAVRKSLTDQSRTI 596
AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA KGF+FSTYAHWWIKQAVRKSL+DQSRTI
Sbjct: 355 AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 414
Query: 595 RLPFHMVEATYRVKEARKQLYSENGRHPDNEEVAEAAGLSMKRLQAVLLIPKAPKSLDQK 416
RLPFHMVEATYRVKEARKQLYSENGR+PD+EEVAEA GLSMKRL AVLL PKAP+SLDQK
Sbjct: 415 RLPFHMVEATYRVKEARKQLYSENGRYPDDEEVAEATGLSMKRLSAVLLTPKAPRSLDQK 474
Query: 415 IGINQNLKLSEVTADPEAESAEEMLIKKFMKKDLEKVLDTLNPREEQVIRWRFGLDDGRM 236
IGIN +LK SE+ ADP+AE+AE++L+K+FMK+DLEKVLD+L+PRE QVIRWRFGL+DGR+
Sbjct: 475 IGINMDLKPSEIIADPDAETAEDLLMKQFMKQDLEKVLDSLSPRENQVIRWRFGLEDGRI 534
Query: 235 KTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAI 110
KTLQEIGE+MGVSRERIRQIESSAFRKLK KKRTK L QY +
Sbjct: 535 KTLQEIGEIMGVSRERIRQIESSAFRKLKKKKRTKQLKQYLV 576
>ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cacao]
gi|508718473|gb|EOY10370.1| RNApolymerase sigma subunit 2
[Theobroma cacao]
Length = 623
Score = 695 bits (1793), Expect = 0.0
Identities = 385/620 (62%), Positives = 427/620 (68%), Gaps = 37/620 (5%)
Frame = -3
Query: 1855 MSCLLPQFKCQPDTFSIHFRN---------------------------LXXXXXXXXXXX 1757
MSCLLPQFKCQPDTFSI FR
Sbjct: 1 MSCLLPQFKCQPDTFSIQFRTHHSHHFLIAVTGMVKYFSPRQCSCGNLTNPPKVSGLIFV 60
Query: 1756 XPSKSKEPICFRTQCILXXXXXXXXXXXXV-LDVEKLRLHSLEADSNAVAANRQWTYFGS 1580
+K KE ICFRTQC+L LDVEKLRL S EA N+VA +R WTY G+
Sbjct: 61 VLAKHKEHICFRTQCVLSTTSSSTSTTATAVLDVEKLRLPSFEAHPNSVAVDRPWTYIGA 120
Query: 1579 VGPPTEESFGASLATETL-TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANNQRXXXXX 1403
GPP+E S GA+LAT+ L T A N
Sbjct: 121 TGPPSEASLGATLATDNLLTSDEAVIAAAAAEAVALARAAVKVAKDAALMAENYNYAKTE 180
Query: 1402 XXXXXXXXADNNTSMWAQLTERERASIIGDSMTVETGLEEENTEQQPLKAAVDLEPTHXX 1223
D+ TS WA TE ERA IIGDS T E+ +EE+++EQ + +LEPT+
Sbjct: 181 MKSGVSFATDSFTSKWALFTEAERAGIIGDSPTDESEMEEDDSEQNSTTESDELEPTNEE 240
Query: 1222 XXXXXXXXXXSIAVRSRRQTERKVKRTRAAEKAAANIVSIKPGSTGRRKRTSVQDIDYSD 1043
SIAVRSRRQTERK KRTRAAEKAAAN+VS+K GST R++R ++QD+DYSD
Sbjct: 241 LEHLEEQLSRSIAVRSRRQTERKAKRTRAAEKAAANVVSVKSGSTNRKRRGALQDVDYSD 300
Query: 1042 PLRYXXXXXXXXXXXXXXXXLQLSAGIQDLLKLEGLHEVLSVRCGGSPTFAQWAAAAGVD 863
PLRY L+LS GIQDLLKLE L E L+ RCGG PTFAQWAAAAGVD
Sbjct: 301 PLRYLRGTTSTSRLLTANEELELSEGIQDLLKLERLQEELAERCGGQPTFAQWAAAAGVD 360
Query: 862 QKELRRRFNYGLLCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 683
QK LR R NYG+ CKD+MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA
Sbjct: 361 QKTLRSRLNYGVHCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 420
Query: 682 LKGFRFSTYAHWWIKQAVRKSLTDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDNE 503
KGF+FSTYAHWWIKQAVRKSL+DQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDNE
Sbjct: 421 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDNE 480
Query: 502 EVAEAAGLSMKRLQAVLLIPKAPKSLDQKIGINQNLK--------LSEVTADPEAESAEE 347
EVAEA GLSMKRL AVLL PKAP+SLDQKIGINQNLK L+EV ADPEAE+AE+
Sbjct: 481 EVAEATGLSMKRLTAVLLTPKAPRSLDQKIGINQNLKPSVCPVSSLAEVIADPEAETAED 540
Query: 346 MLIKKFMKKDLEKVLDTLNPREEQVIRWRFGLDDGRMKTLQEIGELMGVSRERIRQIESS 167
MLIK+FM+KDLEKVLD+L+ RE QVIRWRFG++DGRMKTLQEIGELMGVSRERIRQIES
Sbjct: 541 MLIKQFMRKDLEKVLDSLSQRERQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESC 600
Query: 166 AFRKLKNKKRTKHLMQYAIT 107
AFRKLKNKKRTKHL QY ++
Sbjct: 601 AFRKLKNKKRTKHLQQYLLS 620
>gb|KHG18437.1| RNA polymerase sigma factor rpoD [Gossypium arboreum]
Length = 578
Score = 694 bits (1791), Expect = 0.0
Identities = 374/584 (64%), Positives = 417/584 (71%), Gaps = 1/584 (0%)
Frame = -3
Query: 1855 MSCLLPQFKCQPDTFSIHFRNLXXXXXXXXXXXXPSKSKEPICFRTQCILXXXXXXXXXX 1676
MSCLLPQFKCQPDTFSI FR SK KE ICFR+QC+L
Sbjct: 1 MSCLLPQFKCQPDTFSIQFR---------AHHSHHSKHKESICFRSQCVLSTTSSTSTAT 51
Query: 1675 XXVLDVEKLRLHSLEADSNAVAANRQWTYFGSVGPPTEESFGASLATETL-TXXXXXXXX 1499
VLDVEKLRL S EA SN+V +R WTY G+ GPP+E SFGA+LATE L T
Sbjct: 52 TAVLDVEKLRLPSFEAHSNSVVTDRPWTYTGATGPPSEASFGATLATENLLTSDEAVIAA 111
Query: 1498 XXXXXXXXXXXXXXXXXXXXXXANNQRXXXXXXXXXXXXXADNNTSMWAQLTERERASII 1319
N D TS W TE ERA I+
Sbjct: 112 AAAEAVALARAAAKVAKDAAIMVKNHSSAKTEMKSPGSSATDTLTSKWGLFTEAERAGIV 171
Query: 1318 GDSMTVETGLEEENTEQQPLKAAVDLEPTHXXXXXXXXXXXXSIAVRSRRQTERKVKRTR 1139
GD ++ E +EE++ EQ K + +LEPT+ SIAVRS RQ ERK KRTR
Sbjct: 172 GDYVSDELEMEEDDFEQNSTKESDELEPTNEELKLLEEQLSRSIAVRSNRQPERKAKRTR 231
Query: 1138 AAEKAAANIVSIKPGSTGRRKRTSVQDIDYSDPLRYXXXXXXXXXXXXXXXXLQLSAGIQ 959
AAEKAA N+VS+K GST R++R ++QDIDYSDPLRY L+LS GIQ
Sbjct: 232 AAEKAATNVVSVKSGSTNRKRRGALQDIDYSDPLRYLRGTTNTSKLLTANEELELSEGIQ 291
Query: 958 DLLKLEGLHEVLSVRCGGSPTFAQWAAAAGVDQKELRRRFNYGLLCKDRMIKSNIRLVIS 779
DLLKLE LHE L+ RCG PTFAQWAAAA VD+K LR R NYG +CKD+MIKSNIRLVIS
Sbjct: 292 DLLKLEVLHEELAERCGRPPTFAQWAAAAEVDRKTLRERLNYGTICKDKMIKSNIRLVIS 351
Query: 778 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDALKGFRFSTYAHWWIKQAVRKSLTDQSRT 599
IAKNYQGAGMNLQDLVQEGCRGL+RGAEKFDA KGF+FSTYAHWWIKQAVRKSL+DQSRT
Sbjct: 352 IAKNYQGAGMNLQDLVQEGCRGLIRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 411
Query: 598 IRLPFHMVEATYRVKEARKQLYSENGRHPDNEEVAEAAGLSMKRLQAVLLIPKAPKSLDQ 419
IRLPFHMVEATYRVKEARKQLYSENGR PDN EVAEA GLSMKRL AVLL PKAP+SLDQ
Sbjct: 412 IRLPFHMVEATYRVKEARKQLYSENGRQPDNIEVAEATGLSMKRLTAVLLAPKAPRSLDQ 471
Query: 418 KIGINQNLKLSEVTADPEAESAEEMLIKKFMKKDLEKVLDTLNPREEQVIRWRFGLDDGR 239
KIGINQNLK SEV ADPEA+SAE++L+K+FMKKDLEKVLD+L+PRE QVIRWRFG++DGR
Sbjct: 472 KIGINQNLKPSEVIADPEADSAEDILLKQFMKKDLEKVLDSLSPRERQVIRWRFGMEDGR 531
Query: 238 MKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 107
MKTLQEIGE MGVSRERIRQIE AFRKLKNK+RTKHL QY ++
Sbjct: 532 MKTLQEIGESMGVSRERIRQIELCAFRKLKNKRRTKHLQQYLLS 575
>ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor
rpoD1, putative [Ricinus communis]
Length = 569
Score = 669 bits (1727), Expect = 0.0
Identities = 367/583 (62%), Positives = 415/583 (71%), Gaps = 1/583 (0%)
Frame = -3
Query: 1855 MSCLLPQFKCQPDTFSIHFRNLXXXXXXXXXXXXPSKSKEPICFRTQCILXXXXXXXXXX 1676
MSCLLPQFKCQPDTFSIHFR +KS+EPI +R QCIL
Sbjct: 2 MSCLLPQFKCQPDTFSIHFR---ANYFHFSNVTQSTKSREPIYYRAQCILSTTSPSTSTA 58
Query: 1675 XXVLDVEKLRLHSLEADSNAVAANRQWTYFGSVGPPTEESFGASLATETL-TXXXXXXXX 1499
LD+EKLRL S EA S+++A N WTY +FG++LATETL T
Sbjct: 59 V--LDLEKLRLPSFEAPSDSIAPNSPWTY---------ATFGSTLATETLITSDEAVIAA 107
Query: 1498 XXXXXXXXXXXXXXXXXXXXXXANNQRXXXXXXXXXXXXXADNNTSMWAQLTERERASII 1319
N D S W Q TE ERA II
Sbjct: 108 AAAEAVALARAAVKVAKDAALLVKNFPSAETESKLTSPSTID--ASRWPQFTETERARII 165
Query: 1318 GDSMTVETGLEEENTEQQPLKAAVDLEPTHXXXXXXXXXXXXSIAVRSRRQTERKVKRTR 1139
GDS+ ETG EE++ Q +K + LE TH IAVRSRRQTERK +R R
Sbjct: 166 GDSVATETGPREESSMQSSIKESDYLELTHKELELLQKQLSEGIAVRSRRQTERKARRAR 225
Query: 1138 AAEKAAANIVSIKPGSTGRRKRTSVQDIDYSDPLRYXXXXXXXXXXXXXXXXLQLSAGIQ 959
A EKAA+++VS+KPGST ++KR S+Q++DYSDPLRY L+LSA IQ
Sbjct: 226 AVEKAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTASEELELSAAIQ 285
Query: 958 DLLKLEGLHEVLSVRCGGSPTFAQWAAAAGVDQKELRRRFNYGLLCKDRMIKSNIRLVIS 779
DLLKLE L E L+ R GG PTFAQWAAAAGVDQ+ LR+R N+G +CKD+MIKSNIRLVIS
Sbjct: 286 DLLKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIRLVIS 345
Query: 778 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDALKGFRFSTYAHWWIKQAVRKSLTDQSRT 599
IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA KGF+FSTYAHWWIKQAVRKSL+DQSRT
Sbjct: 346 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 405
Query: 598 IRLPFHMVEATYRVKEARKQLYSENGRHPDNEEVAEAAGLSMKRLQAVLLIPKAPKSLDQ 419
IRLPFHMVEATYRVKEARKQLYSENGRHPD+EEVAEAAGLSMKRL AVLL PKAP+SLDQ
Sbjct: 406 IRLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEAAGLSMKRLSAVLLTPKAPRSLDQ 465
Query: 418 KIGINQNLKLSEVTADPEAESAEEMLIKKFMKKDLEKVLDTLNPREEQVIRWRFGLDDGR 239
KIG+N +LK SEV ADPEAE+AEE+L+K+FMK+DLEKVL+TLNPRE QV+RWRFGL+DGR
Sbjct: 466 KIGMNMDLKPSEVIADPEAETAEELLMKQFMKQDLEKVLNTLNPRETQVVRWRFGLEDGR 525
Query: 238 MKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAI 110
MKTLQEIGE+MGVSRERIRQIESSAFRKLKNKKRTK L QY +
Sbjct: 526 MKTLQEIGEIMGVSRERIRQIESSAFRKLKNKKRTKQLKQYLL 568
>ref|XP_010052665.1| PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Eucalyptus
grandis] gi|629111779|gb|KCW76739.1| hypothetical protein
EUGRSUZ_D01094 [Eucalyptus grandis]
Length = 588
Score = 666 bits (1719), Expect = 0.0
Identities = 362/591 (61%), Positives = 410/591 (69%), Gaps = 4/591 (0%)
Frame = -3
Query: 1870 ELNLNMSCLLPQFKCQPDTFSIHFRNLXXXXXXXXXXXXPSKSKEPICFRTQCILXXXXX 1691
E+ SCLLPQFKCQPDTFSI FR K++E FR QC+L
Sbjct: 9 EVQRMSSCLLPQFKCQPDTFSIQFRT------------HAQKNRETTYFRAQCLLSATSP 56
Query: 1690 XXXXXXXV---LDVEKLRLHSLEADSNAVAANRQWTYFGSVGPPTEESFGASLATETL-T 1523
LD+EKLRL SLE +++ +NR WTY G+VGPP E + GA+LATETL T
Sbjct: 57 STLSSAATAVVLDMEKLRLPSLEVLTDSPTSNRPWTYTGAVGPPAEVNLGATLATETLLT 116
Query: 1522 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANNQRXXXXXXXXXXXXXADNNTSMWAQLT 1343
N+ + S A+L
Sbjct: 117 SDEAVIAAAASEAVTLAKAALKSAKHAALMIRNESSSNIDNKLELSSRTSTSLSKHAELL 176
Query: 1342 ERERASIIGDSMTVETGLEEENTEQQPLKAAVDLEPTHXXXXXXXXXXXXSIAVRSRRQT 1163
E E ++I+ + M E GL E N Q + DLEPTH SIAVRSRRQT
Sbjct: 177 ELEHSNILTELMEPEGGLREGNVMQYSTDKSEDLEPTHEELQLLQVQLFKSIAVRSRRQT 236
Query: 1162 ERKVKRTRAAEKAAANIVSIKPGSTGRRKRTSVQDIDYSDPLRYXXXXXXXXXXXXXXXX 983
ERK R RAAEKAAAN+VS+K GS ++KR ++Q++DYSDPLRY
Sbjct: 237 ERKEIRERAAEKAAANVVSVKSGSLSKKKRAALQEVDYSDPLRYLRGTTSSSRLLTATEE 296
Query: 982 LQLSAGIQDLLKLEGLHEVLSVRCGGSPTFAQWAAAAGVDQKELRRRFNYGLLCKDRMIK 803
+LS GIQDLLKLE L L+ RCGG P FAQWAAAAGVDQK LR+R NYG LCKD+MIK
Sbjct: 297 TELSEGIQDLLKLERLQVELTERCGGEPAFAQWAAAAGVDQKTLRKRLNYGRLCKDKMIK 356
Query: 802 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDALKGFRFSTYAHWWIKQAVRK 623
SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG EKFDA KGF+FSTYAHWWIKQAVRK
Sbjct: 357 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGCEKFDASKGFKFSTYAHWWIKQAVRK 416
Query: 622 SLTDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDNEEVAEAAGLSMKRLQAVLLIP 443
SL+DQSRTIRLPFHMVEATYRVKEARKQLYSENGR PDNEEVAEA GLSMKRL AVL+ P
Sbjct: 417 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDNEEVAEATGLSMKRLNAVLMTP 476
Query: 442 KAPKSLDQKIGINQNLKLSEVTADPEAESAEEMLIKKFMKKDLEKVLDTLNPREEQVIRW 263
KAP+SLDQKIGINQNLK SEV ADP AE++E++L+K+FM++DLEKVLDTLNPRE+QV+RW
Sbjct: 477 KAPRSLDQKIGINQNLKPSEVIADPNAETSEDVLLKQFMRQDLEKVLDTLNPREKQVVRW 536
Query: 262 RFGLDDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAI 110
RFGL+DGRMKTLQEIGELMGVSRERIRQIES AFRKLKNKKRTKHL QY +
Sbjct: 537 RFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVL 587
>ref|XP_010661180.1| PREDICTED: RNA polymerase sigma factor sigB [Vitis vinifera]
gi|296090195|emb|CBI40014.3| unnamed protein product
[Vitis vinifera]
Length = 575
Score = 666 bits (1719), Expect = 0.0
Identities = 364/586 (62%), Positives = 415/586 (70%), Gaps = 3/586 (0%)
Frame = -3
Query: 1855 MSCLLPQFKCQPDTFSIHFRNLXXXXXXXXXXXXPSKSKEPICFRTQCILXXXXXXXXXX 1676
MSCLLPQFKC PDTFS H + SK++E I FR QC L
Sbjct: 1 MSCLLPQFKCPPDTFSTHPK-----------LHILSKNREAIYFRVQCALSTTSPPLSTS 49
Query: 1675 XXV-LDVEKLRLHSLEADSNAVAANRQWTYFGSVGPPTEESFGASLATETLTXXXXXXXX 1499
LD+EKLRL SLE+ SN+VAA+R WTY G VGPPTE +F A+LA ETL
Sbjct: 50 TTAVLDIEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIA 109
Query: 1498 XXXXXXXXXXXXXXXXXXXXXXANNQRXXXXXXXXXXXXXADNNTSMWA--QLTERERAS 1325
+ + ++TS + Q TE ER
Sbjct: 110 AAAAEAVALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIG 169
Query: 1324 IIGDSMTVETGLEEENTEQQPLKAAVDLEPTHXXXXXXXXXXXXSIAVRSRRQTERKVKR 1145
I+GDS+ ETG+ + N+ Q + + DLEPT SI VRS RQ ERK +R
Sbjct: 170 ILGDSVGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARR 229
Query: 1144 TRAAEKAAANIVSIKPGSTGRRKRTSVQDIDYSDPLRYXXXXXXXXXXXXXXXXLQLSAG 965
RAAEKA+A +VS++ GST RRKR S+Q++DYSDPLRY L+LS G
Sbjct: 230 ARAAEKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEG 289
Query: 964 IQDLLKLEGLHEVLSVRCGGSPTFAQWAAAAGVDQKELRRRFNYGLLCKDRMIKSNIRLV 785
IQDLLKLE L E L R G PTFAQWAAAAGVDQK LRRR NYG+ CKD+MIKSNIRLV
Sbjct: 290 IQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLV 349
Query: 784 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDALKGFRFSTYAHWWIKQAVRKSLTDQS 605
ISIAKNYQGAGMN+QDLVQEGCRGLVRGAEKFDA KGF+FSTYAHWWIKQAVRKSL+DQS
Sbjct: 350 ISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 409
Query: 604 RTIRLPFHMVEATYRVKEARKQLYSENGRHPDNEEVAEAAGLSMKRLQAVLLIPKAPKSL 425
RTIRLPFHMVEATYRVKEARKQLYSENGRHP+NEEVAEA GLSMKRL AVLL PKAP+SL
Sbjct: 410 RTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSL 469
Query: 424 DQKIGINQNLKLSEVTADPEAESAEEMLIKKFMKKDLEKVLDTLNPREEQVIRWRFGLDD 245
DQKIGINQNLK SEV ADP+AE+AEE+LIK+FM++DLEKVL++LNPRE+QVIRWR+GL+D
Sbjct: 470 DQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLED 529
Query: 244 GRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 107
GR KTLQEIGELMGVSRERIRQIES AFRKLKNK+RTKHL QY ++
Sbjct: 530 GRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 575
>ref|XP_002319746.2| SIGMA FACTOR B family protein [Populus trichocarpa]
gi|550325142|gb|EEE95669.2| SIGMA FACTOR B family protein
[Populus trichocarpa]
Length = 567
Score = 660 bits (1704), Expect = 0.0
Identities = 354/583 (60%), Positives = 413/583 (70%), Gaps = 1/583 (0%)
Frame = -3
Query: 1855 MSCLLPQFKCQPDTFSIHFRNLXXXXXXXXXXXXPSKSKEPICFRTQCILXXXXXXXXXX 1676
MSCLLPQFKCQPDTFS+HFRNL + ++ P QC+L
Sbjct: 1 MSCLLPQFKCQPDTFSVHFRNLQHHGT--------NHTQLP-----QCVLSSASPSTAV- 46
Query: 1675 XXVLDVEKLRLHSLEADSNAVAANRQWTYFGSVGPPTEESFGASLATETL-TXXXXXXXX 1499
LD+EKLRL SLE S++++ANR WTY G +GP + FG SLA ETL
Sbjct: 47 ---LDLEKLRLPSLEPHSDSISANRPWTYIGGIGPQKKPPFGTSLAAETLIANDEAVIAA 103
Query: 1498 XXXXXXXXXXXXXXXXXXXXXXANNQRXXXXXXXXXXXXXADNNTSMWAQLTERERASII 1319
A N D+ +SMW+ LTE+ERA II
Sbjct: 104 AAAEAVALARAAVKVAKDAAEMAKNYSFMKKETKIPIASTTDSFSSMWSLLTEKERADII 163
Query: 1318 GDSMTVETGLEEENTEQQPLKAAVDLEPTHXXXXXXXXXXXXSIAVRSRRQTERKVKRTR 1139
GDS++ ET L EE + Q P + LEPT IAVRS+RQTERK +R R
Sbjct: 164 GDSVSAETRLREEYSVQYPTEEYDCLEPTQEELALLQKQLSEGIAVRSKRQTERKARRAR 223
Query: 1138 AAEKAAANIVSIKPGSTGRRKRTSVQDIDYSDPLRYXXXXXXXXXXXXXXXXLQLSAGIQ 959
AAEKAAAN+VS+K GST ++KR +Q++D SDPLR+ ++LS GIQ
Sbjct: 224 AAEKAAANVVSVKSGSTSKKKRVPLQEVDQSDPLRFFRGASSSSRLLSATEEVELSEGIQ 283
Query: 958 DLLKLEGLHEVLSVRCGGSPTFAQWAAAAGVDQKELRRRFNYGLLCKDRMIKSNIRLVIS 779
DLLKLE + E L R GG P+FAQWAAAAGVDQ LR+R NYG+LCKD+MIKSN+RLVIS
Sbjct: 284 DLLKLERIEEELKERFGGEPSFAQWAAAAGVDQLTLRKRLNYGILCKDKMIKSNVRLVIS 343
Query: 778 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDALKGFRFSTYAHWWIKQAVRKSLTDQSRT 599
IAKNYQG GMNLQDLVQEGCRGLVRGAEKFDA KGF+FSTYAHWWIKQAVRKSL+D+SRT
Sbjct: 344 IAKNYQGTGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDRSRT 403
Query: 598 IRLPFHMVEATYRVKEARKQLYSENGRHPDNEEVAEAAGLSMKRLQAVLLIPKAPKSLDQ 419
IRLPFHMV+ATYRVKEARKQLYSENGRHPD++EVAEAAGLSMKRL AVLL PKAP+SLDQ
Sbjct: 404 IRLPFHMVDATYRVKEARKQLYSENGRHPDDKEVAEAAGLSMKRLSAVLLTPKAPRSLDQ 463
Query: 418 KIGINQNLKLSEVTADPEAESAEEMLIKKFMKKDLEKVLDTLNPREEQVIRWRFGLDDGR 239
K+G N +LKLSEVTADPEAE+AE++L+K+FMKKDL KVL +L+PRE QV+RWRFG++DGR
Sbjct: 464 KMGFNMDLKLSEVTADPEAETAEDLLMKEFMKKDLAKVLGSLSPRENQVVRWRFGMEDGR 523
Query: 238 MKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAI 110
MKTLQEIGELMGVSRER+RQIE SAFRKLKNK RTK L QY +
Sbjct: 524 MKTLQEIGELMGVSRERVRQIELSAFRKLKNKNRTKQLRQYMV 566
>ref|XP_011013765.1| PREDICTED: RNA polymerase sigma factor sigB-like [Populus euphratica]
Length = 579
Score = 655 bits (1691), Expect = 0.0
Identities = 355/584 (60%), Positives = 411/584 (70%), Gaps = 1/584 (0%)
Frame = -3
Query: 1855 MSCLLPQFKCQPDTFSIHFRNLXXXXXXXXXXXXPSKSKEPICFRTQCILXXXXXXXXXX 1676
MSCLLPQFKCQPD+FSI FRNL SK+ EP CF+ QC L
Sbjct: 1 MSCLLPQFKCQPDSFSIQFRNLQHHRTNHIQL---SKNGEPFCFQAQCALSSASPSTSTA 57
Query: 1675 XXVLDVEKLRLHSLEADSNAVAANRQWTYFGSVGPPTEESFGASLATETL-TXXXXXXXX 1499
L +EKLRL SLE+ S+++AANR WTY G +GPP E FG SLATETL
Sbjct: 58 V--LHLEKLRLPSLESHSDSIAANRPWTYIGGIGPPKEPLFGTSLATETLIVNDEAVIAA 115
Query: 1498 XXXXXXXXXXXXXXXXXXXXXXANNQRXXXXXXXXXXXXXADNNTSMWAQLTERERASII 1319
A N AD+ +SMW+ LT +ERA II
Sbjct: 116 AAAEAVALGRAAVKVAKDAAEMAKNYCSVNTVTKIPVASTADSFSSMWSLLTGKERADII 175
Query: 1318 GDSMTVETGLEEENTEQQPLKAAVDLEPTHXXXXXXXXXXXXSIAVRSRRQTERKVKRTR 1139
G S + ETGL EE + Q P + + PT+ SI VRS+RQT+RK KR R
Sbjct: 176 GVSFSAETGLREECSTQYPTEESDCFGPTYEELALLEKQLSESIVVRSKRQTQRKAKRAR 235
Query: 1138 AAEKAAANIVSIKPGSTGRRKRTSVQDIDYSDPLRYXXXXXXXXXXXXXXXXLQLSAGIQ 959
AAEKAAAN V GS ++K VQ++D SDPLR+ ++LS GIQ
Sbjct: 236 AAEKAAANFVFKNSGSACKKKHVPVQEVDQSDPLRFFRGASTSSRLLSATEEVELSEGIQ 295
Query: 958 DLLKLEGLHEVLSVRCGGSPTFAQWAAAAGVDQKELRRRFNYGLLCKDRMIKSNIRLVIS 779
DLLKLE + E L R GG PTFAQWAAAA VDQ LR+R NYG+LCKD+MIKSNIRLVIS
Sbjct: 296 DLLKLERIEEELKERFGGKPTFAQWAAAARVDQITLRKRLNYGILCKDKMIKSNIRLVIS 355
Query: 778 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDALKGFRFSTYAHWWIKQAVRKSLTDQSRT 599
IA+NYQGAGMNLQDLVQEGCRGL RGAEKFDA KGF+FSTYAHWWI+QAVR+SL+DQSRT
Sbjct: 356 IARNYQGAGMNLQDLVQEGCRGLARGAEKFDASKGFKFSTYAHWWIRQAVRRSLSDQSRT 415
Query: 598 IRLPFHMVEATYRVKEARKQLYSENGRHPDNEEVAEAAGLSMKRLQAVLLIPKAPKSLDQ 419
IRLPFHMV+ATYRVKEARKQLY+ENGRHPD++EVAEA GLSMKRL AVLL PKAP+SLDQ
Sbjct: 416 IRLPFHMVDATYRVKEARKQLYTENGRHPDDKEVAEATGLSMKRLSAVLLTPKAPRSLDQ 475
Query: 418 KIGINQNLKLSEVTADPEAESAEEMLIKKFMKKDLEKVLDTLNPREEQVIRWRFGLDDGR 239
K+G N +LKLSEVTADPEAE+AE++L+K+FMKKDLE+VL++L+PRE QVIRWRFG++DGR
Sbjct: 476 KMGFNMDLKLSEVTADPEAETAEDLLMKEFMKKDLERVLESLSPRENQVIRWRFGMEDGR 535
Query: 238 MKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 107
MKTLQEIGELMGVSRERIRQIE SAFRKLKNK RTK L QY ++
Sbjct: 536 MKTLQEIGELMGVSRERIRQIELSAFRKLKNKNRTKQLRQYLVS 579
>ref|XP_011004934.1| PREDICTED: RNA polymerase sigma factor sigB-like [Populus euphratica]
Length = 567
Score = 655 bits (1691), Expect = 0.0
Identities = 351/584 (60%), Positives = 414/584 (70%), Gaps = 1/584 (0%)
Frame = -3
Query: 1855 MSCLLPQFKCQPDTFSIHFRNLXXXXXXXXXXXXPSKSKEPICFRTQCILXXXXXXXXXX 1676
MSCLLPQFKCQPDTFSIHFRNL + ++ P QC+L
Sbjct: 1 MSCLLPQFKCQPDTFSIHFRNLQHHGT--------NHTQLP-----QCVLSSASPSTAV- 46
Query: 1675 XXVLDVEKLRLHSLEADSNAVAANRQWTYFGSVGPPTEESFGASLATETL-TXXXXXXXX 1499
LD+EKLRL SLE S++++ANR WTY G +GP + F SLA ETL
Sbjct: 47 ---LDLEKLRLPSLEPHSDSISANRPWTYIGGIGPQKKPPFETSLAAETLIADDEAVIAA 103
Query: 1498 XXXXXXXXXXXXXXXXXXXXXXANNQRXXXXXXXXXXXXXADNNTSMWAQLTERERASII 1319
A N D+ +SMW+ LTE+ERA II
Sbjct: 104 AAAEAVALARAAVKVAKDAAEMAKNYSSLKKETKIPIASTTDSFSSMWSLLTEKERADII 163
Query: 1318 GDSMTVETGLEEENTEQQPLKAAVDLEPTHXXXXXXXXXXXXSIAVRSRRQTERKVKRTR 1139
GDS++ ET L E+ + Q P + LEPT IAVRS+RQTERK +R R
Sbjct: 164 GDSVSAETRLREDYSVQYPTEEYDCLEPTQEELALLQKQLSEGIAVRSKRQTERKARRAR 223
Query: 1138 AAEKAAANIVSIKPGSTGRRKRTSVQDIDYSDPLRYXXXXXXXXXXXXXXXXLQLSAGIQ 959
AAEKA+AN+VS+K GS+ ++KR +Q++D SDPLR+ ++LS GIQ
Sbjct: 224 AAEKASANVVSVKSGSSSKKKRVPLQEVDQSDPLRFFRGASSSSRLLSATEEVELSEGIQ 283
Query: 958 DLLKLEGLHEVLSVRCGGSPTFAQWAAAAGVDQKELRRRFNYGLLCKDRMIKSNIRLVIS 779
DLLKLE + E L R GG P+FAQWAAAAGVDQ LR+R NYG+LCKD+MIKSN+RLVIS
Sbjct: 284 DLLKLERIEEELKERFGGEPSFAQWAAAAGVDQLTLRKRINYGILCKDKMIKSNVRLVIS 343
Query: 778 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDALKGFRFSTYAHWWIKQAVRKSLTDQSRT 599
IAKNYQG GMNLQDLVQEGCRGLVRGAEKFDA KGF+FSTYAHWWIKQAVRKSL+D+SRT
Sbjct: 344 IAKNYQGTGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDRSRT 403
Query: 598 IRLPFHMVEATYRVKEARKQLYSENGRHPDNEEVAEAAGLSMKRLQAVLLIPKAPKSLDQ 419
IRLPFHMV+ATYRVKEARKQLY+ENGRHPD++EVAEAAGLSMKRL AVLL PKAP+SLDQ
Sbjct: 404 IRLPFHMVDATYRVKEARKQLYTENGRHPDDKEVAEAAGLSMKRLSAVLLTPKAPRSLDQ 463
Query: 418 KIGINQNLKLSEVTADPEAESAEEMLIKKFMKKDLEKVLDTLNPREEQVIRWRFGLDDGR 239
K+G N +LKLSEVTADPEAE+AE++L+K+FMKKDLEKVL +L+PRE QV+RWRFG++DGR
Sbjct: 464 KMGFNMDLKLSEVTADPEAETAEDLLMKEFMKKDLEKVLGSLSPRENQVVRWRFGMEDGR 523
Query: 238 MKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 107
MKTLQEIGELMGVSRER+RQIE SAFRKLKNK RTK L QY ++
Sbjct: 524 MKTLQEIGELMGVSRERVRQIELSAFRKLKNKNRTKQLRQYMVS 567
>ref|XP_010251515.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Nelumbo
nucifera]
Length = 584
Score = 643 bits (1659), Expect = 0.0
Identities = 349/585 (59%), Positives = 416/585 (71%), Gaps = 3/585 (0%)
Frame = -3
Query: 1855 MSCLLPQFKCQPDTFSIHFR-NLXXXXXXXXXXXXPSKSKEPICFRTQCILXXXXXXXXX 1679
M+CLLPQFKC PDT SIHFR + SKS++ + F+TQC+L
Sbjct: 1 MACLLPQFKCSPDTISIHFRTHQLQHHKHHHCNNNHSKSRDLLSFQTQCVLSTTTTAMTT 60
Query: 1678 XXXVLDVEKLRLHSLEADSNAVAANRQWTYFGSVGPPTEESFGASLATETLTXXXXXXXX 1499
+DVEKLR+ SLE+ S +VA++R +Y G+ GPPT+ SF A+LA E+L
Sbjct: 61 TL--VDVEKLRMPSLESHSISVASDRPLSYIGATGPPTKASFEATLAMESLITGDEALIA 118
Query: 1498 XXXXXXXXXXXXXXXXXXXXXXANNQRXXXXXXXXXXXXXADNNTSMW--AQLTERERAS 1325
N + ++++ AQLTE +
Sbjct: 119 AAAAEAVALAKEAVEVAKDAALMVNDKSSSESENGPSDFSSESHIFRLEKAQLTETQEVG 178
Query: 1324 IIGDSMTVETGLEEENTEQQPLKAAVDLEPTHXXXXXXXXXXXXSIAVRSRRQTERKVKR 1145
I S+ +E+ EEE + Q K + L+ + SIAVRS RQTER+ +R
Sbjct: 179 RIDHSVGLESRQEEEQSVQFSNKDSDGLDSSDEEFKLLQMQLLKSIAVRSGRQTERQARR 238
Query: 1144 TRAAEKAAANIVSIKPGSTGRRKRTSVQDIDYSDPLRYXXXXXXXXXXXXXXXXLQLSAG 965
RA EKA+ N++S+K G + R++R ++QDIDYSDPLRY L+LS G
Sbjct: 239 ARAMEKASTNVLSVKSGHSSRKRRAALQDIDYSDPLRYLRGTTSTSRLLTATEELELSEG 298
Query: 964 IQDLLKLEGLHEVLSVRCGGSPTFAQWAAAAGVDQKELRRRFNYGLLCKDRMIKSNIRLV 785
IQDLLKLE LHE L+ RCGG PTFAQWAAAAGVDQK LR+R NYG+LCKD+MIKSNIRLV
Sbjct: 299 IQDLLKLEKLHEELAERCGGQPTFAQWAAAAGVDQKTLRKRLNYGILCKDKMIKSNIRLV 358
Query: 784 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDALKGFRFSTYAHWWIKQAVRKSLTDQS 605
ISIAKNYQGAGMNLQDLVQEGCRGLV+GAEKFDA KGF+FSTYAHWWIKQAVRKSL+DQS
Sbjct: 359 ISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 418
Query: 604 RTIRLPFHMVEATYRVKEARKQLYSENGRHPDNEEVAEAAGLSMKRLQAVLLIPKAPKSL 425
RTIRLPFHMVEATYRV+EA+KQLYSENGRHPDNEEVAEA GLSMKRL AVLL PKAP SL
Sbjct: 419 RTIRLPFHMVEATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTAVLLTPKAPISL 478
Query: 424 DQKIGINQNLKLSEVTADPEAESAEEMLIKKFMKKDLEKVLDTLNPREEQVIRWRFGLDD 245
DQKIG+NQ++K SE+ ADP+AE+AEE+LIK+FMK+DLEKVLD+LNPRE+QVIRWRFG++D
Sbjct: 479 DQKIGMNQDMKPSEIIADPDAETAEELLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMED 538
Query: 244 GRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAI 110
GRMKTLQEIGELMGVSRERIRQIES AFRKLKNK+RTK+L QY I
Sbjct: 539 GRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKNLQQYVI 583
>ref|XP_010278441.1| PREDICTED: RNA polymerase sigma factor sigB-like [Nelumbo nucifera]
Length = 572
Score = 640 bits (1652), Expect = e-180
Identities = 352/585 (60%), Positives = 407/585 (69%), Gaps = 2/585 (0%)
Frame = -3
Query: 1855 MSCLLPQFKCQPDTFSIHFRNLXXXXXXXXXXXXPSKSKEPICFRTQCILXXXXXXXXXX 1676
M+CLLPQFKC PDT SIHF+ K+++ +CFRTQCIL
Sbjct: 1 MACLLPQFKCSPDTLSIHFKT--HQHQHHYSNNSQLKARDLLCFRTQCILSTTTATMTTT 58
Query: 1675 XXVLDVEKLRLHSLEADSNAVAANRQWTYFGSVGPPTEESFGASLATETLTXXXXXXXXX 1496
+D EKLR+ SLEA +V A+R TY G++ PPT+ F A+LATE L
Sbjct: 59 V--VDDEKLRMPSLEAHLISVPADRPLTYIGAIDPPTKAKFEATLATEPLITGDEALIAA 116
Query: 1495 XXXXXXXXXXXXXXXXXXXXXA--NNQRXXXXXXXXXXXXXADNNTSMWAQLTERERASI 1322
N D AQL E E+ +
Sbjct: 117 AAVEAVALAKAAVEIAKDAALMVSTNPSSKSDKWPPDIPSELDTYWHETAQLNEIEQVDM 176
Query: 1321 IGDSMTVETGLEEENTEQQPLKAAVDLEPTHXXXXXXXXXXXXSIAVRSRRQTERKVKRT 1142
+ S+ E+ +E++ L+PT SIAVRS RQTER+ +R
Sbjct: 177 VHHSLGAESRPKEDSDY---------LDPTDEELKLLQMQLSKSIAVRSGRQTERRARRA 227
Query: 1141 RAAEKAAANIVSIKPGSTGRRKRTSVQDIDYSDPLRYXXXXXXXXXXXXXXXXLQLSAGI 962
RAAEK AAN+V++K GS+ R+KR+++QD+DYSDPLRY L+ S GI
Sbjct: 228 RAAEKVAANVVAVKSGSSSRKKRSALQDVDYSDPLRYLRGTTSTSRLLTATEELEFSEGI 287
Query: 961 QDLLKLEGLHEVLSVRCGGSPTFAQWAAAAGVDQKELRRRFNYGLLCKDRMIKSNIRLVI 782
QDLLKLE L+E L+ R GG PTFAQWAAAAG+DQK LR+R NYG+LCKD+MIKSNIRLVI
Sbjct: 288 QDLLKLEKLYEELAERYGGQPTFAQWAAAAGIDQKTLRKRLNYGILCKDKMIKSNIRLVI 347
Query: 781 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDALKGFRFSTYAHWWIKQAVRKSLTDQSR 602
SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA KGF+FSTYAHWWIKQAVRKSL+DQSR
Sbjct: 348 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 407
Query: 601 TIRLPFHMVEATYRVKEARKQLYSENGRHPDNEEVAEAAGLSMKRLQAVLLIPKAPKSLD 422
TIRLPFHMVEATYRV+EARKQLYSENGRHPDNEEVAEA GLSMKRL AVLL PKAP+SLD
Sbjct: 408 TIRLPFHMVEATYRVREARKQLYSENGRHPDNEEVAEATGLSMKRLTAVLLTPKAPRSLD 467
Query: 421 QKIGINQNLKLSEVTADPEAESAEEMLIKKFMKKDLEKVLDTLNPREEQVIRWRFGLDDG 242
QKIGINQNLK SEV ADP+AE+ EE+L+KKFMK+DLEKVLD+LNPRE+QVIRWRFGL+DG
Sbjct: 468 QKIGINQNLKPSEVIADPDAETTEELLMKKFMKQDLEKVLDSLNPREKQVIRWRFGLEDG 527
Query: 241 RMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 107
RMKTLQEIGELMGVSRERIRQIES AFRKLKNKKRTK+L QY I+
Sbjct: 528 RMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKNLQQYLIS 572
>ref|XP_010052664.1| PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Eucalyptus
grandis]
Length = 601
Score = 637 bits (1642), Expect = e-179
Identities = 343/550 (62%), Positives = 390/550 (70%), Gaps = 4/550 (0%)
Frame = -3
Query: 1747 KSKEPICFRTQCILXXXXXXXXXXXXV---LDVEKLRLHSLEADSNAVAANRQWTYFGSV 1577
K++E FR QC+L LD+EKLRL SLE +++ +NR WTY G+V
Sbjct: 51 KNRETTYFRAQCLLSATSPSTLSSAATAVVLDMEKLRLPSLEVLTDSPTSNRPWTYTGAV 110
Query: 1576 GPPTEESFGASLATETL-TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANNQRXXXXXX 1400
GPP E + GA+LATETL T N+
Sbjct: 111 GPPAEVNLGATLATETLLTSDEAVIAAAASEAVTLAKAALKSAKHAALMIRNESSSNIDN 170
Query: 1399 XXXXXXXADNNTSMWAQLTERERASIIGDSMTVETGLEEENTEQQPLKAAVDLEPTHXXX 1220
+ S A+L E E ++I+ + M E GL E N Q + DLEPTH
Sbjct: 171 KLELSSRTSTSLSKHAELLELEHSNILTELMEPEGGLREGNVMQYSTDKSEDLEPTHEEL 230
Query: 1219 XXXXXXXXXSIAVRSRRQTERKVKRTRAAEKAAANIVSIKPGSTGRRKRTSVQDIDYSDP 1040
SIAVRSRRQTERK R RAAEKAAAN+VS+K GS ++KR ++Q++DYSDP
Sbjct: 231 QLLQVQLFKSIAVRSRRQTERKEIRERAAEKAAANVVSVKSGSLSKKKRAALQEVDYSDP 290
Query: 1039 LRYXXXXXXXXXXXXXXXXLQLSAGIQDLLKLEGLHEVLSVRCGGSPTFAQWAAAAGVDQ 860
LRY +LS GIQDLLKLE L L+ RCGG P FAQWAAAAGVDQ
Sbjct: 291 LRYLRGTTSSSRLLTATEETELSEGIQDLLKLERLQVELTERCGGEPAFAQWAAAAGVDQ 350
Query: 859 KELRRRFNYGLLCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAL 680
K LR+R NYG LCKD+MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG EKFDA
Sbjct: 351 KTLRKRLNYGRLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGCEKFDAS 410
Query: 679 KGFRFSTYAHWWIKQAVRKSLTDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDNEE 500
KGF+FSTYAHWWIKQAVRKSL+DQSRTIRLPFHMVEATYRVKEARKQLYSENGR PDNEE
Sbjct: 411 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDNEE 470
Query: 499 VAEAAGLSMKRLQAVLLIPKAPKSLDQKIGINQNLKLSEVTADPEAESAEEMLIKKFMKK 320
VAEA GLSMKRL AVL+ PKAP+SLDQKIGINQNLK SEV ADP AE++E++L+K+FM++
Sbjct: 471 VAEATGLSMKRLNAVLMTPKAPRSLDQKIGINQNLKPSEVIADPNAETSEDVLLKQFMRQ 530
Query: 319 DLEKVLDTLNPREEQVIRWRFGLDDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKK 140
DLEKVLDTLNPRE+QV+RWRFGL+DGRMKTLQEIGELMGVSRERIRQIES AFRKLKNKK
Sbjct: 531 DLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKK 590
Query: 139 RTKHLMQYAI 110
RTKHL QY +
Sbjct: 591 RTKHLQQYVL 600
>ref|XP_011086680.1| PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Sesamum
indicum]
Length = 613
Score = 636 bits (1641), Expect = e-179
Identities = 358/618 (57%), Positives = 410/618 (66%), Gaps = 36/618 (5%)
Frame = -3
Query: 1855 MSCLLPQFKCQPDTFSIHFRNLXXXXXXXXXXXXPSKSKEPICFRTQCILXXXXXXXXXX 1676
MSCLLPQFKC PDTF+++F++ SKS+E FRTQCIL
Sbjct: 1 MSCLLPQFKCSPDTFAVNFKS------QSHTSVYSSKSREATSFRTQCILSTTPPPTLTA 54
Query: 1675 XXV-LDVEKLRLHSLEADSNAV---------------------------------AANRQ 1598
LD EKL+L SLEA N V AAN+
Sbjct: 55 TTTVLDFEKLQLSSLEAIPNQVPADRSWSTPTSSAKTAMLDLEGLPSLDAHPITTAANKP 114
Query: 1597 WTYFGSVGPPTEESFGASLATETLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANNQR 1418
WTY G++ PP+E + GA+L TETL +
Sbjct: 115 WTYVGAIAPPSEVTLGANLDTETLLTSEEAVIAAAASEALALAKAAVKVAKDAAMMVSHH 174
Query: 1417 XXXXXXXXXXXXXADNNTSMWA--QLTERERASIIGDSMTVETGLEEENTEQQPLKAAVD 1244
AD NT ++ QL I D+ E GL E L + D
Sbjct: 175 KPTKSNSSATGMFADVNTPIFEKNQLAHLAERVDIRDAKVAEVGLGENYPAAHSLTESDD 234
Query: 1243 LEPTHXXXXXXXXXXXXSIAVRSRRQTERKVKRTRAAEKAAANIVSIKPGSTGRRKRTSV 1064
+EP+ SIAVRS+RQTER+ +RTRAAEKAAANIVS+K GS+ R+KR++V
Sbjct: 235 VEPSAEELEFLEAQLSKSIAVRSKRQTERRARRTRAAEKAAANIVSVKSGSSSRKKRSAV 294
Query: 1063 QDIDYSDPLRYXXXXXXXXXXXXXXXXLQLSAGIQDLLKLEGLHEVLSVRCGGSPTFAQW 884
QD+DYSDPLRY LS+GIQ LLKLE L L+ R GG PTFAQW
Sbjct: 295 QDVDYSDPLRYLRGTTSSSRLLTASEEQVLSSGIQVLLKLERLQMELTQRYGGQPTFAQW 354
Query: 883 AAAAGVDQKELRRRFNYGLLCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 704
AAAAGVDQK LR++ NYG+LCKD+MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR
Sbjct: 355 AAAAGVDQKTLRKQINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 414
Query: 703 GAEKFDALKGFRFSTYAHWWIKQAVRKSLTDQSRTIRLPFHMVEATYRVKEARKQLYSEN 524
GAEKFDA KGF+FSTYAHWWIKQAVRKSL+DQSRTIRLPFHMVEATYRVKEARKQLYSEN
Sbjct: 415 GAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 474
Query: 523 GRHPDNEEVAEAAGLSMKRLQAVLLIPKAPKSLDQKIGINQNLKLSEVTADPEAESAEEM 344
GRHPD+EEVAEA GLSMKRL AV+L PKAP+SLDQKIGINQ+LK S+V ADPEAE+AE++
Sbjct: 475 GRHPDDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQDLKPSDVIADPEAETAEDL 534
Query: 343 LIKKFMKKDLEKVLDTLNPREEQVIRWRFGLDDGRMKTLQEIGELMGVSRERIRQIESSA 164
LIK+FMK+DL KVLD+LNPRE+QV+ WRFGL+DGRMKTLQEIGELMGVSRERIRQIES A
Sbjct: 535 LIKQFMKQDLAKVLDSLNPREKQVVIWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCA 594
Query: 163 FRKLKNKKRTKHLMQYAI 110
FRKLKNKKRTKHL QY +
Sbjct: 595 FRKLKNKKRTKHLQQYVM 612
>ref|XP_010097670.1| RNA polymerase sigma factor rpoD [Morus notabilis]
gi|587881690|gb|EXB70625.1| RNA polymerase sigma factor
rpoD [Morus notabilis]
Length = 574
Score = 636 bits (1640), Expect = e-179
Identities = 349/584 (59%), Positives = 401/584 (68%), Gaps = 1/584 (0%)
Frame = -3
Query: 1855 MSCLLPQFKCQPDTFSIHFRNLXXXXXXXXXXXXPSKSKEPICFRTQCILXXXXXXXXXX 1676
MSCLLPQF C+PDTFS F ++ + QC+L
Sbjct: 1 MSCLLPQFNCKPDTFSAQFNFRTHSLPTPNSHLPKARDINSLA---QCVLSTTSPSTSVG 57
Query: 1675 XXV-LDVEKLRLHSLEADSNAVAANRQWTYFGSVGPPTEESFGASLATETLTXXXXXXXX 1499
L VEKLR SL+A+S +V +NR WTY G+ GPP E +F A+LATETL
Sbjct: 58 ATYVLSVEKLRFPSLDANSESVTSNRPWTYTGATGPPVEANFEATLATETLLTSEEAVIA 117
Query: 1498 XXXXXXXXXXXXXXXXXXXXXXANNQRXXXXXXXXXXXXXADNNTSMWAQLTERERASII 1319
+ T AQ R R
Sbjct: 118 AAAAEAVTLAKAAVKVAKDAALLVRPSTRAESISLVSSEARNIKT---AQAASRVR---- 170
Query: 1318 GDSMTVETGLEEENTEQQPLKAAVDLEPTHXXXXXXXXXXXXSIAVRSRRQTERKVKRTR 1139
DS+ E L E++ + K + DL+PT+ SIAVRSRRQ+ERK KR R
Sbjct: 171 -DSLRAEMALIEDHPPKDAAKESNDLQPTNEELRILQEQLSKSIAVRSRRQSERKAKRDR 229
Query: 1138 AAEKAAANIVSIKPGSTGRRKRTSVQDIDYSDPLRYXXXXXXXXXXXXXXXXLQLSAGIQ 959
AAEKAAAN+V++K GS R+KR SVQD+D+SDPLRY ++LS GIQ
Sbjct: 230 AAEKAAANVVAVKSGSNSRKKRASVQDVDHSDPLRYLRSTTSTSRLLTATEEIELSEGIQ 289
Query: 958 DLLKLEGLHEVLSVRCGGSPTFAQWAAAAGVDQKELRRRFNYGLLCKDRMIKSNIRLVIS 779
DLLKLE L E L+ RCGG PTFAQWAAAAGVDQK LRRR NYG+LCKD+MIKSN+RLVIS
Sbjct: 290 DLLKLEKLQEELAERCGGPPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNVRLVIS 349
Query: 778 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDALKGFRFSTYAHWWIKQAVRKSLTDQSRT 599
IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA KGF+FSTYAHWWIKQAVRKSL+DQSRT
Sbjct: 350 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 409
Query: 598 IRLPFHMVEATYRVKEARKQLYSENGRHPDNEEVAEAAGLSMKRLQAVLLIPKAPKSLDQ 419
IRLPFHMVEATYRVKEARKQLYSENGR P++EEVAEA GLSMKRL AVLL PKAP+SL+Q
Sbjct: 410 IRLPFHMVEATYRVKEARKQLYSENGRQPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQ 469
Query: 418 KIGINQNLKLSEVTADPEAESAEEMLIKKFMKKDLEKVLDTLNPREEQVIRWRFGLDDGR 239
KIGINQNLK SE+ ADP+AE+ E++L ++FMK+DL+KVLD+LN RE+QVIRWRFG+DDGR
Sbjct: 470 KIGINQNLKPSEIIADPDAETLEDVLTRQFMKQDLDKVLDSLNQREKQVIRWRFGMDDGR 529
Query: 238 MKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 107
MKTLQEIGELMGVSRERIRQIES AFRKLKNKKRTKHL QY I+
Sbjct: 530 MKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLIS 573