BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zanthoxylum22_contig00009195
         (2052 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KDO49412.1| hypothetical protein CISIN_1g007404mg [Citrus sin...   850   0.0  
ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-...   848   0.0  
ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citr...   840   0.0  
gb|KDO49416.1| hypothetical protein CISIN_1g007404mg [Citrus sin...   785   0.0  
ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-...   783   0.0  
ref|XP_012070322.1| PREDICTED: RNA polymerase sigma factor sigB ...   717   0.0  
ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cac...   715   0.0  
gb|KHG18437.1| RNA polymerase sigma factor rpoD [Gossypium arbor...   704   0.0  
ref|XP_012434812.1| PREDICTED: RNA polymerase sigma factor sigB ...   703   0.0  
ref|XP_010661180.1| PREDICTED: RNA polymerase sigma factor sigB ...   694   0.0  
ref|XP_010052665.1| PREDICTED: RNA polymerase sigma factor sigB ...   682   0.0  
ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative ...   679   0.0  
ref|XP_010251515.1| PREDICTED: RNA polymerase sigma factor sigB-...   671   0.0  
ref|XP_010278441.1| PREDICTED: RNA polymerase sigma factor sigB-...   668   0.0  
ref|XP_010097670.1| RNA polymerase sigma factor rpoD [Morus nota...   667   0.0  
gb|KJB46073.1| hypothetical protein B456_007G347300 [Gossypium r...   665   0.0  
ref|XP_002319746.2| SIGMA FACTOR B family protein [Populus trich...   664   0.0  
gb|AKC88655.1| sigma factor [Francoa sonchifolia]                     662   0.0  
ref|XP_011004934.1| PREDICTED: RNA polymerase sigma factor sigB-...   662   0.0  
ref|XP_008240611.1| PREDICTED: RNA polymerase sigma factor sigB ...   661   0.0  

>gb|KDO49412.1| hypothetical protein CISIN_1g007404mg [Citrus sinensis]
          Length = 605

 Score =  850 bits (2196), Expect = 0.0
 Identities = 457/600 (76%), Positives = 481/600 (80%), Gaps = 2/600 (0%)
 Frame = -2

Query: 1916 AAGLKGQAQNSK**QNKLNMSCLLPQFKCQPDTFSIHFRTLYNXXXXXXXXXK--EPICF 1743
            AAGL  + Q S    NK NMSCLLPQFKCQPDTFSIHFRTL+N         K  EPICF
Sbjct: 6    AAGLGKETQISTSSFNK-NMSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICF 64

Query: 1742 RTRCVLXXXXXXXXXXXXTVLDVEKLRLPSLEAYSNAVAANRQWTYFGAVGPPTEESFGP 1563
            RT CVL            TVLDVEKLRLPSLEA+SNAVAANRQWTYFGAVGP TEE+ G 
Sbjct: 65   RTHCVLSTTSPSTSTAMTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGT 124

Query: 1562 XXXXXXXXXXXSXXXXXXXXXXXXXXXXXXXXXXXALMVNNQNSTKPNSKPAISSSADNN 1383
                       +                       ALMVN+ NS KP SKPAISSSAD N
Sbjct: 125  SLATETLTSDEAVIAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTN 184

Query: 1382 TSMWAQLTEQERASIIGDSMTVETGPEEEYSEQQPLKESVVSEPTHXXXXXXXXXXXXSI 1203
            TSMWAQLTE+ERASIIGDS+ VE  PEEEYSEQQPL +S   EPTH            SI
Sbjct: 185  TSMWAQLTERERASIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSI 244

Query: 1202 AVRSRRQXXXXXXXXXXXXXXXANVVSVNSGSTGRRKRASVQEVDYSDPLRYLRATTNTS 1023
            AVRSRRQ               ANV+SV SGST RRKR SVQEVDYSDPLRYLRATT++S
Sbjct: 245  AVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSS 304

Query: 1022 RLLTATEELQLSEGIQDLLKLEGLHEVLSERCGGSPTFTQWAAAAGVDRKELRRRLNYGI 843
            RLLTA EE+QLS GIQDLLKLEGL EVLSERCGGSPTF QWAAAAGVD++ELRRRLNYGI
Sbjct: 305  RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364

Query: 842  LCKDKMIKSNIRLVISIAKNYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 663
            LCKDKMI SNIRLVISIAKNYQGAGMNL+DLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Sbjct: 365  LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424

Query: 662  WIKQAVRKSLTDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 483
            WIKQAVRKSL+DQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR
Sbjct: 425  WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 484

Query: 482  LESILLTPKAPKSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNL 303
            L ++LL+PKAP+SLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLN 
Sbjct: 485  LHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNP 544

Query: 302  REKQVVRWRFGLDDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLLQYVIT 123
            RE+QVVRWRFGL+DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHL+QY IT
Sbjct: 545  RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604


>ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Citrus
            sinensis]
          Length = 605

 Score =  848 bits (2190), Expect = 0.0
 Identities = 456/600 (76%), Positives = 479/600 (79%), Gaps = 2/600 (0%)
 Frame = -2

Query: 1916 AAGLKGQAQNSK**QNKLNMSCLLPQFKCQPDTFSIHFRTLYNXXXXXXXXXK--EPICF 1743
            AAGL  + Q S    NK NMSCLLPQFKCQPDTFSIHFRTL+N         K  EPICF
Sbjct: 6    AAGLGKETQISTSSFNK-NMSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICF 64

Query: 1742 RTRCVLXXXXXXXXXXXXTVLDVEKLRLPSLEAYSNAVAANRQWTYFGAVGPPTEESFGP 1563
            RT CVL            TVLDVEKLRLPSLEA+SNAVAANRQWTYFGAVGP TEE+ G 
Sbjct: 65   RTHCVLSTTSPSTSTAMTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGT 124

Query: 1562 XXXXXXXXXXXSXXXXXXXXXXXXXXXXXXXXXXXALMVNNQNSTKPNSKPAISSSADNN 1383
                       +                       ALMVN+ NS KP SKPAIS SAD N
Sbjct: 125  SLATETLTSDEAVIAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISLSADTN 184

Query: 1382 TSMWAQLTEQERASIIGDSMTVETGPEEEYSEQQPLKESVVSEPTHXXXXXXXXXXXXSI 1203
            TSMWAQLTE+ERASIIGDS+ VE  PEEEYSEQQPL +S   EPTH            SI
Sbjct: 185  TSMWAQLTERERASIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSI 244

Query: 1202 AVRSRRQXXXXXXXXXXXXXXXANVVSVNSGSTGRRKRASVQEVDYSDPLRYLRATTNTS 1023
            AVRSRRQ               ANV+SV SGST RRKR SVQEVDYSDPLRYLRATT++S
Sbjct: 245  AVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSS 304

Query: 1022 RLLTATEELQLSEGIQDLLKLEGLHEVLSERCGGSPTFTQWAAAAGVDRKELRRRLNYGI 843
            RLLTA EE+QLS GIQDLLKLEGL EVLSERCGGSPTF QWAAAAGVD++ELRRRLNYGI
Sbjct: 305  RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364

Query: 842  LCKDKMIKSNIRLVISIAKNYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 663
            LCKDKMI SNIRLVISIAKNYQGAGMNL+DLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Sbjct: 365  LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424

Query: 662  WIKQAVRKSLTDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 483
            WIKQAVRKSL+DQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR
Sbjct: 425  WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 484

Query: 482  LESILLTPKAPKSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNL 303
            L ++LLTPKAP+SLDQK GINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLN 
Sbjct: 485  LHAVLLTPKAPRSLDQKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNP 544

Query: 302  REKQVVRWRFGLDDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLLQYVIT 123
            RE+QVVRWRFGL+DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHL+QY IT
Sbjct: 545  RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604


>ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citrus clementina]
            gi|557539534|gb|ESR50578.1| hypothetical protein
            CICLE_v10030998mg [Citrus clementina]
          Length = 605

 Score =  840 bits (2171), Expect = 0.0
 Identities = 452/600 (75%), Positives = 478/600 (79%), Gaps = 2/600 (0%)
 Frame = -2

Query: 1916 AAGLKGQAQNSK**QNKLNMSCLLPQFKCQPDTFSIHFRTLYNXXXXXXXXXK--EPICF 1743
            AAG+  + Q S    NK NMSCLLPQFKCQPDTFSIHFRTL+N         K  EPICF
Sbjct: 6    AAGVVKETQISTSSFNK-NMSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICF 64

Query: 1742 RTRCVLXXXXXXXXXXXXTVLDVEKLRLPSLEAYSNAVAANRQWTYFGAVGPPTEESFGP 1563
            RT CVL            TVLDVEKLRLPSLEA+SNAVAANRQWTYFGAVGP TEE+ G 
Sbjct: 65   RTHCVLSTTSPSTSTAMTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGT 124

Query: 1562 XXXXXXXXXXXSXXXXXXXXXXXXXXXXXXXXXXXALMVNNQNSTKPNSKPAISSSADNN 1383
                       +                       ALMVN+ NS KP SKPAIS SAD +
Sbjct: 125  SLATETLTSDEAVIAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISLSADTS 184

Query: 1382 TSMWAQLTEQERASIIGDSMTVETGPEEEYSEQQPLKESVVSEPTHXXXXXXXXXXXXSI 1203
            TSMWAQLTE+ERASIIGDS+ VE  PEEEYSEQQPL +S   EPTH            SI
Sbjct: 185  TSMWAQLTERERASIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSI 244

Query: 1202 AVRSRRQXXXXXXXXXXXXXXXANVVSVNSGSTGRRKRASVQEVDYSDPLRYLRATTNTS 1023
            AVRSRRQ               ANV+SV SGST RRKR SVQEVDYSDPLRYLRATT++S
Sbjct: 245  AVRSRRQTERKARRTRAAEKAAANVMSVKSGSTTRRKRPSVQEVDYSDPLRYLRATTSSS 304

Query: 1022 RLLTATEELQLSEGIQDLLKLEGLHEVLSERCGGSPTFTQWAAAAGVDRKELRRRLNYGI 843
            RLLTA EE+QLS GIQDLLKLEGL EVLSERCGGSPTF QWAAAAGVD++ELRRRLNYGI
Sbjct: 305  RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364

Query: 842  LCKDKMIKSNIRLVISIAKNYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 663
            LCKDKMI SNIRLVISIAKNYQGAGMNL+DLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Sbjct: 365  LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424

Query: 662  WIKQAVRKSLTDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 483
            WIKQAVRKSL+DQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVA+ATGLSMKR
Sbjct: 425  WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAKATGLSMKR 484

Query: 482  LESILLTPKAPKSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNL 303
            L ++LL PKAP+SLDQK GINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLN 
Sbjct: 485  LHAVLLAPKAPRSLDQKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNP 544

Query: 302  REKQVVRWRFGLDDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLLQYVIT 123
            RE+QVVRWRFGL+DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHL+QY IT
Sbjct: 545  RERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604


>gb|KDO49416.1| hypothetical protein CISIN_1g007404mg [Citrus sinensis]
          Length = 525

 Score =  785 bits (2028), Expect = 0.0
 Identities = 413/521 (79%), Positives = 435/521 (83%)
 Frame = -2

Query: 1685 VLDVEKLRLPSLEAYSNAVAANRQWTYFGAVGPPTEESFGPXXXXXXXXXXXSXXXXXXX 1506
            VLDVEKLRLPSLEA+SNAVAANRQWTYFGAVGP TEE+ G            +       
Sbjct: 4    VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAASA 63

Query: 1505 XXXXXXXXXXXXXXXXALMVNNQNSTKPNSKPAISSSADNNTSMWAQLTEQERASIIGDS 1326
                            ALMVN+ NS KP SKPAISSSAD NTSMWAQLTE+ERASIIGDS
Sbjct: 64   EAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIGDS 123

Query: 1325 MTVETGPEEEYSEQQPLKESVVSEPTHXXXXXXXXXXXXSIAVRSRRQXXXXXXXXXXXX 1146
            + VE  PEEEYSEQQPL +S   EPTH            SIAVRSRRQ            
Sbjct: 124  VIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAE 183

Query: 1145 XXXANVVSVNSGSTGRRKRASVQEVDYSDPLRYLRATTNTSRLLTATEELQLSEGIQDLL 966
               ANV+SV SGST RRKR SVQEVDYSDPLRYLRATT++SRLLTA EE+QLS GIQDLL
Sbjct: 184  KAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLL 243

Query: 965  KLEGLHEVLSERCGGSPTFTQWAAAAGVDRKELRRRLNYGILCKDKMIKSNIRLVISIAK 786
            KLEGL EVLSERCGGSPTF QWAAAAGVD++ELRRRLNYGILCKDKMI SNIRLVISIAK
Sbjct: 244  KLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAK 303

Query: 785  NYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLTDQSRTIRL 606
            NYQGAGMNL+DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL+DQSRTIRL
Sbjct: 304  NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 363

Query: 605  PFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLESILLTPKAPKSLDQKIG 426
            PFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL ++LL+PKAP+SLDQKIG
Sbjct: 364  PFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423

Query: 425  INQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNLREKQVVRWRFGLDDGRMKT 246
            INQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLN RE+QVVRWRFGL+DGRMKT
Sbjct: 424  INQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKT 483

Query: 245  LQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLLQYVIT 123
            LQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHL+QY IT
Sbjct: 484  LQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 524


>ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X2 [Citrus
            sinensis]
          Length = 525

 Score =  783 bits (2022), Expect = 0.0
 Identities = 412/521 (79%), Positives = 433/521 (83%)
 Frame = -2

Query: 1685 VLDVEKLRLPSLEAYSNAVAANRQWTYFGAVGPPTEESFGPXXXXXXXXXXXSXXXXXXX 1506
            VLDVEKLRLPSLEA+SNAVAANRQWTYFGAVGP TEE+ G            +       
Sbjct: 4    VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAASA 63

Query: 1505 XXXXXXXXXXXXXXXXALMVNNQNSTKPNSKPAISSSADNNTSMWAQLTEQERASIIGDS 1326
                            ALMVN+ NS KP SKPAIS SAD NTSMWAQLTE+ERASIIGDS
Sbjct: 64   EAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISLSADTNTSMWAQLTERERASIIGDS 123

Query: 1325 MTVETGPEEEYSEQQPLKESVVSEPTHXXXXXXXXXXXXSIAVRSRRQXXXXXXXXXXXX 1146
            + VE  PEEEYSEQQPL +S   EPTH            SIAVRSRRQ            
Sbjct: 124  VIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAE 183

Query: 1145 XXXANVVSVNSGSTGRRKRASVQEVDYSDPLRYLRATTNTSRLLTATEELQLSEGIQDLL 966
               ANV+SV SGST RRKR SVQEVDYSDPLRYLRATT++SRLLTA EE+QLS GIQDLL
Sbjct: 184  KAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLL 243

Query: 965  KLEGLHEVLSERCGGSPTFTQWAAAAGVDRKELRRRLNYGILCKDKMIKSNIRLVISIAK 786
            KLEGL EVLSERCGGSPTF QWAAAAGVD++ELRRRLNYGILCKDKMI SNIRLVISIAK
Sbjct: 244  KLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAK 303

Query: 785  NYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLTDQSRTIRL 606
            NYQGAGMNL+DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL+DQSRTIRL
Sbjct: 304  NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 363

Query: 605  PFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLESILLTPKAPKSLDQKIG 426
            PFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL ++LLTPKAP+SLDQK G
Sbjct: 364  PFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLTPKAPRSLDQKFG 423

Query: 425  INQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNLREKQVVRWRFGLDDGRMKT 246
            INQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLN RE+QVVRWRFGL+DGRMKT
Sbjct: 424  INQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKT 483

Query: 245  LQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLLQYVIT 123
            LQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHL+QY IT
Sbjct: 484  LQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 524


>ref|XP_012070322.1| PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
            gi|802585247|ref|XP_012070323.1| PREDICTED: RNA
            polymerase sigma factor sigB [Jatropha curcas]
            gi|643732514|gb|KDP39610.1| hypothetical protein
            JCGZ_02630 [Jatropha curcas]
          Length = 577

 Score =  717 bits (1850), Expect = 0.0
 Identities = 381/580 (65%), Positives = 434/580 (74%), Gaps = 2/580 (0%)
 Frame = -2

Query: 1859 MSCLLPQFKCQPDTFSIHFRTLY--NXXXXXXXXXKEPICFRTRCVLXXXXXXXXXXXXT 1686
            MSCLLPQFKCQPDTFSIHFRT Y  N         +EP+CFR +C+L             
Sbjct: 1    MSCLLPQFKCQPDTFSIHFRTHYLQNSNFCQSAKSREPVCFRAQCILSTTSPSTSTA--- 57

Query: 1685 VLDVEKLRLPSLEAYSNAVAANRQWTYFGAVGPPTEESFGPXXXXXXXXXXXSXXXXXXX 1506
            VLD+EKLRLPS EA+ +++ AN  WTY G++GPP E                +       
Sbjct: 58   VLDLEKLRLPSFEAHPDSLVANSPWTYVGSIGPPKETFGSTLATETLITGDDAVIAAAAA 117

Query: 1505 XXXXXXXXXXXXXXXXALMVNNQNSTKPNSKPAISSSADNNTSMWAQLTEQERASIIGDS 1326
                            A++V +  S++  SK  I S AD + S W Q TE +RA IIGDS
Sbjct: 118  EAVALARAAAKVAKDAAILVKSFPSSEAESKLEIPSIADVS-SRWPQFTETDRARIIGDS 176

Query: 1325 MTVETGPEEEYSEQQPLKESVVSEPTHXXXXXXXXXXXXSIAVRSRRQXXXXXXXXXXXX 1146
            +T ETG  EE+  Q P KES   EPTH             IAVRSRRQ            
Sbjct: 177  VTAETGSREEHPMQHPTKESDHLEPTHEELELLQKQLSEGIAVRSRRQTERKERRTRAAE 236

Query: 1145 XXXANVVSVNSGSTGRRKRASVQEVDYSDPLRYLRATTNTSRLLTATEELQLSEGIQDLL 966
               ANV+S  SGST ++KR  +QEVDYSDPLRYLR TT+TS+LLTATEEL+LSEGIQDLL
Sbjct: 237  KAAANVMSWKSGSTSKKKRGPLQEVDYSDPLRYLRGTTSTSKLLTATEELELSEGIQDLL 296

Query: 965  KLEGLHEVLSERCGGSPTFTQWAAAAGVDRKELRRRLNYGILCKDKMIKSNIRLVISIAK 786
            KLE LHE L+ERCGG PTF QWAAAAGVD+K LR RLNYGI CKD+MIKSNIRLVISIAK
Sbjct: 297  KLERLHEELAERCGGQPTFQQWAAAAGVDQKTLRTRLNYGISCKDRMIKSNIRLVISIAK 356

Query: 785  NYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLTDQSRTIRL 606
            NYQGAGMNL+DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL+DQSRTIRL
Sbjct: 357  NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 416

Query: 605  PFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLESILLTPKAPKSLDQKIG 426
            PFHMVEATYRVKEARKQLYSENGR+P++EEVAEATGLSMKRL ++LLTPKAP+SLDQKIG
Sbjct: 417  PFHMVEATYRVKEARKQLYSENGRYPDDEEVAEATGLSMKRLSAVLLTPKAPRSLDQKIG 476

Query: 425  INQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNLREKQVVRWRFGLDDGRMKT 246
            IN +LKPSE+IADP+AETAEDLL+K+FMK+DLEKVLD+L+ RE QV+RWRFGL+DGR+KT
Sbjct: 477  INMDLKPSEIIADPDAETAEDLLMKQFMKQDLEKVLDSLSPRENQVIRWRFGLEDGRIKT 536

Query: 245  LQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLLQYVI 126
            LQEIGE+MGVSRERIRQIESSAFRKLK KKRTK L QY++
Sbjct: 537  LQEIGEIMGVSRERIRQIESSAFRKLKKKKRTKQLKQYLV 576


>ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cacao]
            gi|508718473|gb|EOY10370.1| RNApolymerase sigma subunit 2
            [Theobroma cacao]
          Length = 623

 Score =  715 bits (1845), Expect = 0.0
 Identities = 393/620 (63%), Positives = 435/620 (70%), Gaps = 41/620 (6%)
 Frame = -2

Query: 1859 MSCLLPQFKCQPDTFSIHFRTLYNXXXXXXXXXK-------------------------- 1758
            MSCLLPQFKCQPDTFSI FRT ++                                    
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRTHHSHHFLIAVTGMVKYFSPRQCSCGNLTNPPKVSGLIFV 60

Query: 1757 ------EPICFRTRCVLXXXXXXXXXXXXTVLDVEKLRLPSLEAYSNAVAANRQWTYFGA 1596
                  E ICFRT+CVL             VLDVEKLRLPS EA+ N+VA +R WTY GA
Sbjct: 61   VLAKHKEHICFRTQCVLSTTSSSTSTTATAVLDVEKLRLPSFEAHPNSVAVDRPWTYIGA 120

Query: 1595 VGPPTEESFGPXXXXXXXXXXXSXXXXXXXXXXXXXXXXXXXXXXXA-LMVNNQNSTKPN 1419
             GPP+E S G                                    A LM  N N  K  
Sbjct: 121  TGPPSEASLGATLATDNLLTSDEAVIAAAAAEAVALARAAVKVAKDAALMAENYNYAKTE 180

Query: 1418 SKPAISSSADNNTSMWAQLTEQERASIIGDSMTVETGPEEEYSEQQPLKESVVSEPTHXX 1239
             K  +S + D+ TS WA  TE ERA IIGDS T E+  EE+ SEQ    ES   EPT+  
Sbjct: 181  MKSGVSFATDSFTSKWALFTEAERAGIIGDSPTDESEMEEDDSEQNSTTESDELEPTNEE 240

Query: 1238 XXXXXXXXXXSIAVRSRRQXXXXXXXXXXXXXXXANVVSVNSGSTGRRKRASVQEVDYSD 1059
                      SIAVRSRRQ               ANVVSV SGST R++R ++Q+VDYSD
Sbjct: 241  LEHLEEQLSRSIAVRSRRQTERKAKRTRAAEKAAANVVSVKSGSTNRKRRGALQDVDYSD 300

Query: 1058 PLRYLRATTNTSRLLTATEELQLSEGIQDLLKLEGLHEVLSERCGGSPTFTQWAAAAGVD 879
            PLRYLR TT+TSRLLTA EEL+LSEGIQDLLKLE L E L+ERCGG PTF QWAAAAGVD
Sbjct: 301  PLRYLRGTTSTSRLLTANEELELSEGIQDLLKLERLQEELAERCGGQPTFAQWAAAAGVD 360

Query: 878  RKELRRRLNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLEDLVQEGCRGLVRGAEKFDA 699
            +K LR RLNYG+ CKDKMIKSNIRLVISIAKNYQGAGMNL+DLVQEGCRGLVRGAEKFDA
Sbjct: 361  QKTLRSRLNYGVHCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 420

Query: 698  SKGFKFSTYAHWWIKQAVRKSLTDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 519
            SKGFKFSTYAHWWIKQAVRKSL+DQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP+NE
Sbjct: 421  SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDNE 480

Query: 518  EVAEATGLSMKRLESILLTPKAPKSLDQKIGINQNLKPS--------EVIADPEAETAED 363
            EVAEATGLSMKRL ++LLTPKAP+SLDQKIGINQNLKPS        EVIADPEAETAED
Sbjct: 481  EVAEATGLSMKRLTAVLLTPKAPRSLDQKIGINQNLKPSVCPVSSLAEVIADPEAETAED 540

Query: 362  LLIKKFMKEDLEKVLDTLNLREKQVVRWRFGLDDGRMKTLQEIGELMGVSRERIRQIESS 183
            +LIK+FM++DLEKVLD+L+ RE+QV+RWRFG++DGRMKTLQEIGELMGVSRERIRQIES 
Sbjct: 541  MLIKQFMRKDLEKVLDSLSQRERQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESC 600

Query: 182  AFRKLKNKKRTKHLLQYVIT 123
            AFRKLKNKKRTKHL QY+++
Sbjct: 601  AFRKLKNKKRTKHLQQYLLS 620


>gb|KHG18437.1| RNA polymerase sigma factor rpoD [Gossypium arboreum]
          Length = 578

 Score =  704 bits (1817), Expect = 0.0
 Identities = 377/580 (65%), Positives = 426/580 (73%), Gaps = 1/580 (0%)
 Frame = -2

Query: 1859 MSCLLPQFKCQPDTFSIHFRTLYNXXXXXXXXXKEPICFRTRCVLXXXXXXXXXXXXTVL 1680
            MSCLLPQFKCQPDTFSI FR  ++          E ICFR++CVL             VL
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRAHHSHHSKHK----ESICFRSQCVLSTTSSTSTATTA-VL 55

Query: 1679 DVEKLRLPSLEAYSNAVAANRQWTYFGAVGPPTEESFGPXXXXXXXXXXXSXXXXXXXXX 1500
            DVEKLRLPS EA+SN+V  +R WTY GA GPP+E SFG                      
Sbjct: 56   DVEKLRLPSFEAHSNSVVTDRPWTYTGATGPPSEASFGATLATENLLTSDEAVIAAAAAE 115

Query: 1499 XXXXXXXXXXXXXXA-LMVNNQNSTKPNSKPAISSSADNNTSMWAQLTEQERASIIGDSM 1323
                          A +MV N +S K   K   SS+ D  TS W   TE ERA I+GD +
Sbjct: 116  AVALARAAAKVAKDAAIMVKNHSSAKTEMKSPGSSATDTLTSKWGLFTEAERAGIVGDYV 175

Query: 1322 TVETGPEEEYSEQQPLKESVVSEPTHXXXXXXXXXXXXSIAVRSRRQXXXXXXXXXXXXX 1143
            + E   EE+  EQ   KES   EPT+            SIAVRS RQ             
Sbjct: 176  SDELEMEEDDFEQNSTKESDELEPTNEELKLLEEQLSRSIAVRSNRQPERKAKRTRAAEK 235

Query: 1142 XXANVVSVNSGSTGRRKRASVQEVDYSDPLRYLRATTNTSRLLTATEELQLSEGIQDLLK 963
               NVVSV SGST R++R ++Q++DYSDPLRYLR TTNTS+LLTA EEL+LSEGIQDLLK
Sbjct: 236  AATNVVSVKSGSTNRKRRGALQDIDYSDPLRYLRGTTNTSKLLTANEELELSEGIQDLLK 295

Query: 962  LEGLHEVLSERCGGSPTFTQWAAAAGVDRKELRRRLNYGILCKDKMIKSNIRLVISIAKN 783
            LE LHE L+ERCG  PTF QWAAAA VDRK LR RLNYG +CKDKMIKSNIRLVISIAKN
Sbjct: 296  LEVLHEELAERCGRPPTFAQWAAAAEVDRKTLRERLNYGTICKDKMIKSNIRLVISIAKN 355

Query: 782  YQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLTDQSRTIRLP 603
            YQGAGMNL+DLVQEGCRGL+RGAEKFDASKGFKFSTYAHWWIKQAVRKSL+DQSRTIRLP
Sbjct: 356  YQGAGMNLQDLVQEGCRGLIRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 415

Query: 602  FHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLESILLTPKAPKSLDQKIGI 423
            FHMVEATYRVKEARKQLYSENGR P+N EVAEATGLSMKRL ++LL PKAP+SLDQKIGI
Sbjct: 416  FHMVEATYRVKEARKQLYSENGRQPDNIEVAEATGLSMKRLTAVLLAPKAPRSLDQKIGI 475

Query: 422  NQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNLREKQVVRWRFGLDDGRMKTL 243
            NQNLKPSEVIADPEA++AED+L+K+FMK+DLEKVLD+L+ RE+QV+RWRFG++DGRMKTL
Sbjct: 476  NQNLKPSEVIADPEADSAEDILLKQFMKKDLEKVLDSLSPRERQVIRWRFGMEDGRMKTL 535

Query: 242  QEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLLQYVIT 123
            QEIGE MGVSRERIRQIE  AFRKLKNK+RTKHL QY+++
Sbjct: 536  QEIGESMGVSRERIRQIELCAFRKLKNKRRTKHLQQYLLS 575


>ref|XP_012434812.1| PREDICTED: RNA polymerase sigma factor sigB [Gossypium raimondii]
            gi|763778947|gb|KJB46070.1| hypothetical protein
            B456_007G347300 [Gossypium raimondii]
          Length = 578

 Score =  703 bits (1815), Expect = 0.0
 Identities = 375/580 (64%), Positives = 426/580 (73%), Gaps = 1/580 (0%)
 Frame = -2

Query: 1859 MSCLLPQFKCQPDTFSIHFRTLYNXXXXXXXXXKEPICFRTRCVLXXXXXXXXXXXXTVL 1680
            MSCLLPQFKCQPDTFSI FR  ++          E ICFR++CVL             VL
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRAHHSHHSKHK----ESICFRSQCVLSTTSSTSMATTA-VL 55

Query: 1679 DVEKLRLPSLEAYSNAVAANRQWTYFGAVGPPTEESFGPXXXXXXXXXXXSXXXXXXXXX 1500
            DVEKLRLPS EA+SN+V  +R WTY GA GPP+E SFG                      
Sbjct: 56   DVEKLRLPSFEAHSNSVVTDRPWTYTGATGPPSEASFGATLATENLLTSDEAVIAAAAAE 115

Query: 1499 XXXXXXXXXXXXXXA-LMVNNQNSTKPNSKPAISSSADNNTSMWAQLTEQERASIIGDSM 1323
                          A +MV N  S K   K   SS+ D  TS W   TE ERA I+GD +
Sbjct: 116  AVALARAAAKVAKDAAIMVKNHGSAKTEMKSPGSSATDTLTSKWGLFTEAERAGIVGDYV 175

Query: 1322 TVETGPEEEYSEQQPLKESVVSEPTHXXXXXXXXXXXXSIAVRSRRQXXXXXXXXXXXXX 1143
            + E   EE++ EQ   KES   EPT+            SIAVRS RQ             
Sbjct: 176  SDELELEEDHLEQNSTKESDELEPTNEELKLLEEQLSRSIAVRSHRQTERKAKRTRAAEK 235

Query: 1142 XXANVVSVNSGSTGRRKRASVQEVDYSDPLRYLRATTNTSRLLTATEELQLSEGIQDLLK 963
               NVVSV SGST R++R ++Q++DYSDPLRYLR TTNTS+LLTA EEL+LSEGIQDLLK
Sbjct: 236  AATNVVSVKSGSTNRKRRGALQDIDYSDPLRYLRGTTNTSKLLTANEELELSEGIQDLLK 295

Query: 962  LEGLHEVLSERCGGSPTFTQWAAAAGVDRKELRRRLNYGILCKDKMIKSNIRLVISIAKN 783
            LEGLHE L+ERCG  PTF QWAAAA VDRK LR RLNYG +C DKMIKSNIRLVISIAKN
Sbjct: 296  LEGLHEELAERCGRPPTFAQWAAAAEVDRKTLRERLNYGTICMDKMIKSNIRLVISIAKN 355

Query: 782  YQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLTDQSRTIRLP 603
            YQGAGMNL+DLVQEGCRGL+RGAEKFDASKGFKFSTYAHWWIKQAVRKSL+DQSRTIRLP
Sbjct: 356  YQGAGMNLQDLVQEGCRGLIRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 415

Query: 602  FHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLESILLTPKAPKSLDQKIGI 423
            FHMVEATYRVKEARKQL+SENGR P+N EVAEATGLSMKRL ++LL PKAP+SLDQKIGI
Sbjct: 416  FHMVEATYRVKEARKQLFSENGRQPDNIEVAEATGLSMKRLTAVLLAPKAPRSLDQKIGI 475

Query: 422  NQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNLREKQVVRWRFGLDDGRMKTL 243
            NQNLKPSEVIADPEA++AED+L+K+FMK+DLEKVLD+L+ RE+QV+RWRFG++DGR+KTL
Sbjct: 476  NQNLKPSEVIADPEADSAEDILLKQFMKKDLEKVLDSLSPRERQVIRWRFGMEDGRVKTL 535

Query: 242  QEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLLQYVIT 123
            QEIGE MGVSRERIRQIE  AFRKLKNK+RTKHL QY+++
Sbjct: 536  QEIGESMGVSRERIRQIELCAFRKLKNKRRTKHLQQYLLS 575


>ref|XP_010661180.1| PREDICTED: RNA polymerase sigma factor sigB [Vitis vinifera]
            gi|296090195|emb|CBI40014.3| unnamed protein product
            [Vitis vinifera]
          Length = 575

 Score =  694 bits (1791), Expect = 0.0
 Identities = 380/581 (65%), Positives = 422/581 (72%), Gaps = 2/581 (0%)
 Frame = -2

Query: 1859 MSCLLPQFKCQPDTFSIHFRTLYNXXXXXXXXXKEPICFRTRCVLXXXXXXXXXXXXTVL 1680
            MSCLLPQFKC PDTFS H +             +E I FR +C L             VL
Sbjct: 1    MSCLLPQFKCPPDTFSTHPKL------HILSKNREAIYFRVQCALSTTSPPLSTSTTAVL 54

Query: 1679 DVEKLRLPSLEAYSNAVAANRQWTYFGAVGPPTEESF-GPXXXXXXXXXXXSXXXXXXXX 1503
            D+EKLRLPSLE++SN+VAA+R WTY G VGPPTE +F              +        
Sbjct: 55   DIEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAAE 114

Query: 1502 XXXXXXXXXXXXXXXALMVNNQNSTKPNSKPAISSSADNNTSMWA-QLTEQERASIIGDS 1326
                           A +V   NS K  +KPA   S D+ +     Q TE ER  I+GDS
Sbjct: 115  AVALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILGDS 174

Query: 1325 MTVETGPEEEYSEQQPLKESVVSEPTHXXXXXXXXXXXXSIAVRSRRQXXXXXXXXXXXX 1146
            +  ETG  +  S Q   ++S   EPT             SI VRS RQ            
Sbjct: 175  VGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARAAE 234

Query: 1145 XXXANVVSVNSGSTGRRKRASVQEVDYSDPLRYLRATTNTSRLLTATEELQLSEGIQDLL 966
               A VVSV SGST RRKR S+QEVDYSDPLRYLR TT+TSRLLTATEEL+LSEGIQDLL
Sbjct: 235  KASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLL 294

Query: 965  KLEGLHEVLSERCGGSPTFTQWAAAAGVDRKELRRRLNYGILCKDKMIKSNIRLVISIAK 786
            KLE L E L ER G  PTF QWAAAAGVD+K LRRR NYGI CKDKMIKSNIRLVISIAK
Sbjct: 295  KLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAK 354

Query: 785  NYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLTDQSRTIRL 606
            NYQGAGMN++DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL+DQSRTIRL
Sbjct: 355  NYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 414

Query: 605  PFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLESILLTPKAPKSLDQKIG 426
            PFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL ++LLTPKAP+SLDQKIG
Sbjct: 415  PFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIG 474

Query: 425  INQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNLREKQVVRWRFGLDDGRMKT 246
            INQNLKPSEVIADP+AETAE+LLIK+FM+EDLEKVL++LN REKQV+RWR+GL+DGR KT
Sbjct: 475  INQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKT 534

Query: 245  LQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLLQYVIT 123
            LQEIGELMGVSRERIRQIES AFRKLKNK+RTKHL QY+++
Sbjct: 535  LQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 575


>ref|XP_010052665.1| PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Eucalyptus
            grandis] gi|629111779|gb|KCW76739.1| hypothetical protein
            EUGRSUZ_D01094 [Eucalyptus grandis]
          Length = 588

 Score =  682 bits (1761), Expect = 0.0
 Identities = 374/580 (64%), Positives = 422/580 (72%), Gaps = 3/580 (0%)
 Frame = -2

Query: 1856 SCLLPQFKCQPDTFSIHFRTLYNXXXXXXXXXKEPICFRTRCVLXXXXXXXXXXXXT--V 1683
            SCLLPQFKCQPDTFSI FRT            +E   FR +C+L            T  V
Sbjct: 15   SCLLPQFKCQPDTFSIQFRT-------HAQKNRETTYFRAQCLLSATSPSTLSSAATAVV 67

Query: 1682 LDVEKLRLPSLEAYSNAVAANRQWTYFGAVGPPTEESFGPXXXXXXXXXXXSXXXXXXXX 1503
            LD+EKLRLPSLE  +++  +NR WTY GAVGPP E + G                     
Sbjct: 68   LDMEKLRLPSLEVLTDSPTSNRPWTYTGAVGPPAEVNLGATLATETLLTSDEAVIAAAAS 127

Query: 1502 XXXXXXXXXXXXXXXA-LMVNNQNSTKPNSKPAISSSADNNTSMWAQLTEQERASIIGDS 1326
                           A LM+ N++S+  ++K  +SS    + S  A+L E E ++I+ + 
Sbjct: 128  EAVTLAKAALKSAKHAALMIRNESSSNIDNKLELSSRTSTSLSKHAELLELEHSNILTEL 187

Query: 1325 MTVETGPEEEYSEQQPLKESVVSEPTHXXXXXXXXXXXXSIAVRSRRQXXXXXXXXXXXX 1146
            M  E G  E    Q    +S   EPTH            SIAVRSRRQ            
Sbjct: 188  MEPEGGLREGNVMQYSTDKSEDLEPTHEELQLLQVQLFKSIAVRSRRQTERKEIRERAAE 247

Query: 1145 XXXANVVSVNSGSTGRRKRASVQEVDYSDPLRYLRATTNTSRLLTATEELQLSEGIQDLL 966
               ANVVSV SGS  ++KRA++QEVDYSDPLRYLR TT++SRLLTATEE +LSEGIQDLL
Sbjct: 248  KAAANVVSVKSGSLSKKKRAALQEVDYSDPLRYLRGTTSSSRLLTATEETELSEGIQDLL 307

Query: 965  KLEGLHEVLSERCGGSPTFTQWAAAAGVDRKELRRRLNYGILCKDKMIKSNIRLVISIAK 786
            KLE L   L+ERCGG P F QWAAAAGVD+K LR+RLNYG LCKDKMIKSNIRLVISIAK
Sbjct: 308  KLERLQVELTERCGGEPAFAQWAAAAGVDQKTLRKRLNYGRLCKDKMIKSNIRLVISIAK 367

Query: 785  NYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLTDQSRTIRL 606
            NYQGAGMNL+DLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSL+DQSRTIRL
Sbjct: 368  NYQGAGMNLQDLVQEGCRGLVRGCEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 427

Query: 605  PFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLESILLTPKAPKSLDQKIG 426
            PFHMVEATYRVKEARKQLYSENGR P+NEEVAEATGLSMKRL ++L+TPKAP+SLDQKIG
Sbjct: 428  PFHMVEATYRVKEARKQLYSENGRQPDNEEVAEATGLSMKRLNAVLMTPKAPRSLDQKIG 487

Query: 425  INQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNLREKQVVRWRFGLDDGRMKT 246
            INQNLKPSEVIADP AET+ED+L+K+FM++DLEKVLDTLN REKQVVRWRFGL+DGRMKT
Sbjct: 488  INQNLKPSEVIADPNAETSEDVLLKQFMRQDLEKVLDTLNPREKQVVRWRFGLEDGRMKT 547

Query: 245  LQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLLQYVI 126
            LQEIGELMGVSRERIRQIES AFRKLKNKKRTKHL QYV+
Sbjct: 548  LQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVL 587


>ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
            gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor
            rpoD1, putative [Ricinus communis]
          Length = 569

 Score =  679 bits (1751), Expect = 0.0
 Identities = 373/580 (64%), Positives = 420/580 (72%), Gaps = 2/580 (0%)
 Frame = -2

Query: 1859 MSCLLPQFKCQPDTFSIHFRTLYNXXXXXXXXXK--EPICFRTRCVLXXXXXXXXXXXXT 1686
            MSCLLPQFKCQPDTFSIHFR  Y          K  EPI +R +C+L             
Sbjct: 2    MSCLLPQFKCQPDTFSIHFRANYFHFSNVTQSTKSREPIYYRAQCILSTTSPSTSTA--- 58

Query: 1685 VLDVEKLRLPSLEAYSNAVAANRQWTYFGAVGPPTEESFGPXXXXXXXXXXXSXXXXXXX 1506
            VLD+EKLRLPS EA S+++A N  WTY         E+              +       
Sbjct: 59   VLDLEKLRLPSFEAPSDSIAPNSPWTYATFGSTLATETL--------ITSDEAVIAAAAA 110

Query: 1505 XXXXXXXXXXXXXXXXALMVNNQNSTKPNSKPAISSSADNNTSMWAQLTEQERASIIGDS 1326
                            AL+V N  S +  SK    S+ D   S W Q TE ERA IIGDS
Sbjct: 111  EAVALARAAVKVAKDAALLVKNFPSAETESKLTSPSTID--ASRWPQFTETERARIIGDS 168

Query: 1325 MTVETGPEEEYSEQQPLKESVVSEPTHXXXXXXXXXXXXSIAVRSRRQXXXXXXXXXXXX 1146
            +  ETGP EE S Q  +KES   E TH             IAVRSRRQ            
Sbjct: 169  VATETGPREESSMQSSIKESDYLELTHKELELLQKQLSEGIAVRSRRQTERKARRARAVE 228

Query: 1145 XXXANVVSVNSGSTGRRKRASVQEVDYSDPLRYLRATTNTSRLLTATEELQLSEGIQDLL 966
               ++VVSV  GST ++KR S+QEVDYSDPLRYLR TT+TSRLLTA+EEL+LS  IQDLL
Sbjct: 229  KAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTASEELELSAAIQDLL 288

Query: 965  KLEGLHEVLSERCGGSPTFTQWAAAAGVDRKELRRRLNYGILCKDKMIKSNIRLVISIAK 786
            KLE L E L+ER GG PTF QWAAAAGVD++ LR+R+N+G +CKDKMIKSNIRLVISIAK
Sbjct: 289  KLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIRLVISIAK 348

Query: 785  NYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLTDQSRTIRL 606
            NYQGAGMNL+DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL+DQSRTIRL
Sbjct: 349  NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 408

Query: 605  PFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLESILLTPKAPKSLDQKIG 426
            PFHMVEATYRVKEARKQLYSENGRHP++EEVAEA GLSMKRL ++LLTPKAP+SLDQKIG
Sbjct: 409  PFHMVEATYRVKEARKQLYSENGRHPDDEEVAEAAGLSMKRLSAVLLTPKAPRSLDQKIG 468

Query: 425  INQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNLREKQVVRWRFGLDDGRMKT 246
            +N +LKPSEVIADPEAETAE+LL+K+FMK+DLEKVL+TLN RE QVVRWRFGL+DGRMKT
Sbjct: 469  MNMDLKPSEVIADPEAETAEELLMKQFMKQDLEKVLNTLNPRETQVVRWRFGLEDGRMKT 528

Query: 245  LQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLLQYVI 126
            LQEIGE+MGVSRERIRQIESSAFRKLKNKKRTK L QY++
Sbjct: 529  LQEIGEIMGVSRERIRQIESSAFRKLKNKKRTKQLKQYLL 568


>ref|XP_010251515.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Nelumbo
            nucifera]
          Length = 584

 Score =  671 bits (1731), Expect = 0.0
 Identities = 365/586 (62%), Positives = 435/586 (74%), Gaps = 8/586 (1%)
 Frame = -2

Query: 1859 MSCLLPQFKCQPDTFSIHFRT------LYNXXXXXXXXXKEPICFRTRCVLXXXXXXXXX 1698
            M+CLLPQFKC PDT SIHFRT       ++         ++ + F+T+CVL         
Sbjct: 1    MACLLPQFKCSPDTISIHFRTHQLQHHKHHHCNNNHSKSRDLLSFQTQCVLSTTTTAMTT 60

Query: 1697 XXXTVLDVEKLRLPSLEAYSNAVAANRQWTYFGAVGPPTEESF-GPXXXXXXXXXXXSXX 1521
                ++DVEKLR+PSLE++S +VA++R  +Y GA GPPT+ SF              +  
Sbjct: 61   T---LVDVEKLRMPSLESHSISVASDRPLSYIGATGPPTKASFEATLAMESLITGDEALI 117

Query: 1520 XXXXXXXXXXXXXXXXXXXXXALMVNNQNSTKPNSKPAISSSADNNTSMW-AQLTEQERA 1344
                                 ALMVN+++S++  + P+  SS  +   +  AQLTE +  
Sbjct: 118  AAAAAEAVALAKEAVEVAKDAALMVNDKSSSESENGPSDFSSESHIFRLEKAQLTETQEV 177

Query: 1343 SIIGDSMTVETGPEEEYSEQQPLKESVVSEPTHXXXXXXXXXXXXSIAVRSRRQXXXXXX 1164
              I  S+ +E+  EEE S Q   K+S   + +             SIAVRS RQ      
Sbjct: 178  GRIDHSVGLESRQEEEQSVQFSNKDSDGLDSSDEEFKLLQMQLLKSIAVRSGRQTERQAR 237

Query: 1163 XXXXXXXXXANVVSVNSGSTGRRKRASVQEVDYSDPLRYLRATTNTSRLLTATEELQLSE 984
                      NV+SV SG + R++RA++Q++DYSDPLRYLR TT+TSRLLTATEEL+LSE
Sbjct: 238  RARAMEKASTNVLSVKSGHSSRKRRAALQDIDYSDPLRYLRGTTSTSRLLTATEELELSE 297

Query: 983  GIQDLLKLEGLHEVLSERCGGSPTFTQWAAAAGVDRKELRRRLNYGILCKDKMIKSNIRL 804
            GIQDLLKLE LHE L+ERCGG PTF QWAAAAGVD+K LR+RLNYGILCKDKMIKSNIRL
Sbjct: 298  GIQDLLKLEKLHEELAERCGGQPTFAQWAAAAGVDQKTLRKRLNYGILCKDKMIKSNIRL 357

Query: 803  VISIAKNYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLTDQ 624
            VISIAKNYQGAGMNL+DLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVRKSL+DQ
Sbjct: 358  VISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 417

Query: 623  SRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLESILLTPKAPKS 444
            SRTIRLPFHMVEATYRV+EA+KQLYSENGRHP+NEEVAEATGLSMKRL ++LLTPKAP S
Sbjct: 418  SRTIRLPFHMVEATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTAVLLTPKAPIS 477

Query: 443  LDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNLREKQVVRWRFGLD 264
            LDQKIG+NQ++KPSE+IADP+AETAE+LLIK+FMK+DLEKVLD+LN REKQV+RWRFG++
Sbjct: 478  LDQKIGMNQDMKPSEIIADPDAETAEELLIKQFMKQDLEKVLDSLNPREKQVIRWRFGME 537

Query: 263  DGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLLQYVI 126
            DGRMKTLQEIGELMGVSRERIRQIES AFRKLKNK+RTK+L QYVI
Sbjct: 538  DGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKNLQQYVI 583


>ref|XP_010278441.1| PREDICTED: RNA polymerase sigma factor sigB-like [Nelumbo nucifera]
          Length = 572

 Score =  668 bits (1724), Expect = 0.0
 Identities = 367/584 (62%), Positives = 426/584 (72%), Gaps = 5/584 (0%)
 Frame = -2

Query: 1859 MSCLLPQFKCQPDTFSIHFRT---LYNXXXXXXXXXKEPICFRTRCVLXXXXXXXXXXXX 1689
            M+CLLPQFKC PDT SIHF+T    ++         ++ +CFRT+C+L            
Sbjct: 1    MACLLPQFKCSPDTLSIHFKTHQHQHHYSNNSQLKARDLLCFRTQCILSTTTATMTTT-- 58

Query: 1688 TVLDVEKLRLPSLEAYSNAVAANRQWTYFGAVGPPTEESF-GPXXXXXXXXXXXSXXXXX 1512
             V+D EKLR+PSLEA+  +V A+R  TY GA+ PPT+  F              +     
Sbjct: 59   -VVDDEKLRMPSLEAHLISVPADRPLTYIGAIDPPTKAKFEATLATEPLITGDEALIAAA 117

Query: 1511 XXXXXXXXXXXXXXXXXXALMVNNQNSTKPNS-KPAISSSADNNTSMWAQLTEQERASII 1335
                              ALMV+   S+K +   P I S  D      AQL E E+  ++
Sbjct: 118  AVEAVALAKAAVEIAKDAALMVSTNPSSKSDKWPPDIPSELDTYWHETAQLNEIEQVDMV 177

Query: 1334 GDSMTVETGPEEEYSEQQPLKESVVSEPTHXXXXXXXXXXXXSIAVRSRRQXXXXXXXXX 1155
              S+  E+ P+E+         S   +PT             SIAVRS RQ         
Sbjct: 178  HHSLGAESRPKED---------SDYLDPTDEELKLLQMQLSKSIAVRSGRQTERRARRAR 228

Query: 1154 XXXXXXANVVSVNSGSTGRRKRASVQEVDYSDPLRYLRATTNTSRLLTATEELQLSEGIQ 975
                  ANVV+V SGS+ R+KR+++Q+VDYSDPLRYLR TT+TSRLLTATEEL+ SEGIQ
Sbjct: 229  AAEKVAANVVAVKSGSSSRKKRSALQDVDYSDPLRYLRGTTSTSRLLTATEELEFSEGIQ 288

Query: 974  DLLKLEGLHEVLSERCGGSPTFTQWAAAAGVDRKELRRRLNYGILCKDKMIKSNIRLVIS 795
            DLLKLE L+E L+ER GG PTF QWAAAAG+D+K LR+RLNYGILCKDKMIKSNIRLVIS
Sbjct: 289  DLLKLEKLYEELAERYGGQPTFAQWAAAAGIDQKTLRKRLNYGILCKDKMIKSNIRLVIS 348

Query: 794  IAKNYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLTDQSRT 615
            IAKNYQGAGMNL+DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL+DQSRT
Sbjct: 349  IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 408

Query: 614  IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLESILLTPKAPKSLDQ 435
            IRLPFHMVEATYRV+EARKQLYSENGRHP+NEEVAEATGLSMKRL ++LLTPKAP+SLDQ
Sbjct: 409  IRLPFHMVEATYRVREARKQLYSENGRHPDNEEVAEATGLSMKRLTAVLLTPKAPRSLDQ 468

Query: 434  KIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNLREKQVVRWRFGLDDGR 255
            KIGINQNLKPSEVIADP+AET E+LL+KKFMK+DLEKVLD+LN REKQV+RWRFGL+DGR
Sbjct: 469  KIGINQNLKPSEVIADPDAETTEELLMKKFMKQDLEKVLDSLNPREKQVIRWRFGLEDGR 528

Query: 254  MKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLLQYVIT 123
            MKTLQEIGELMGVSRERIRQIES AFRKLKNKKRTK+L QY+I+
Sbjct: 529  MKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKNLQQYLIS 572


>ref|XP_010097670.1| RNA polymerase sigma factor rpoD [Morus notabilis]
            gi|587881690|gb|EXB70625.1| RNA polymerase sigma factor
            rpoD [Morus notabilis]
          Length = 574

 Score =  667 bits (1722), Expect = 0.0
 Identities = 365/581 (62%), Positives = 416/581 (71%), Gaps = 2/581 (0%)
 Frame = -2

Query: 1859 MSCLLPQFKCQPDTFS--IHFRTLYNXXXXXXXXXKEPICFRTRCVLXXXXXXXXXXXXT 1686
            MSCLLPQF C+PDTFS   +FRT               I    +CVL             
Sbjct: 1    MSCLLPQFNCKPDTFSAQFNFRTHSLPTPNSHLPKARDINSLAQCVLSTTSPSTSVGATY 60

Query: 1685 VLDVEKLRLPSLEAYSNAVAANRQWTYFGAVGPPTEESFGPXXXXXXXXXXXSXXXXXXX 1506
            VL VEKLR PSL+A S +V +NR WTY GA GPP E +F                     
Sbjct: 61   VLSVEKLRFPSLDANSESVTSNRPWTYTGATGPPVEANFEATLATETLLTSEEAVIAAAA 120

Query: 1505 XXXXXXXXXXXXXXXXALMVNNQNSTKPNSKPAISSSADNNTSMWAQLTEQERASIIGDS 1326
                            A ++    ST+  S   +SS A N       +   + AS + DS
Sbjct: 121  AEAVTLAKAAVKVAKDAALLVRP-STRAESISLVSSEARN-------IKTAQAASRVRDS 172

Query: 1325 MTVETGPEEEYSEQQPLKESVVSEPTHXXXXXXXXXXXXSIAVRSRRQXXXXXXXXXXXX 1146
            +  E    E++  +   KES   +PT+            SIAVRSRRQ            
Sbjct: 173  LRAEMALIEDHPPKDAAKESNDLQPTNEELRILQEQLSKSIAVRSRRQSERKAKRDRAAE 232

Query: 1145 XXXANVVSVNSGSTGRRKRASVQEVDYSDPLRYLRATTNTSRLLTATEELQLSEGIQDLL 966
               ANVV+V SGS  R+KRASVQ+VD+SDPLRYLR+TT+TSRLLTATEE++LSEGIQDLL
Sbjct: 233  KAAANVVAVKSGSNSRKKRASVQDVDHSDPLRYLRSTTSTSRLLTATEEIELSEGIQDLL 292

Query: 965  KLEGLHEVLSERCGGSPTFTQWAAAAGVDRKELRRRLNYGILCKDKMIKSNIRLVISIAK 786
            KLE L E L+ERCGG PTF QWAAAAGVD+K LRRR+NYGILCKDKMIKSN+RLVISIAK
Sbjct: 293  KLEKLQEELAERCGGPPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNVRLVISIAK 352

Query: 785  NYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLTDQSRTIRL 606
            NYQGAGMNL+DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL+DQSRTIRL
Sbjct: 353  NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 412

Query: 605  PFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLESILLTPKAPKSLDQKIG 426
            PFHMVEATYRVKEARKQLYSENGR PN+EEVAEATGLSMKRL ++LLTPKAP+SL+QKIG
Sbjct: 413  PFHMVEATYRVKEARKQLYSENGRQPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIG 472

Query: 425  INQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNLREKQVVRWRFGLDDGRMKT 246
            INQNLKPSE+IADP+AET ED+L ++FMK+DL+KVLD+LN REKQV+RWRFG+DDGRMKT
Sbjct: 473  INQNLKPSEIIADPDAETLEDVLTRQFMKQDLDKVLDSLNQREKQVIRWRFGMDDGRMKT 532

Query: 245  LQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLLQYVIT 123
            LQEIGELMGVSRERIRQIES AFRKLKNKKRTKHL QY+I+
Sbjct: 533  LQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLIS 573


>gb|KJB46073.1| hypothetical protein B456_007G347300 [Gossypium raimondii]
          Length = 560

 Score =  665 bits (1715), Expect = 0.0
 Identities = 362/580 (62%), Positives = 408/580 (70%), Gaps = 1/580 (0%)
 Frame = -2

Query: 1859 MSCLLPQFKCQPDTFSIHFRTLYNXXXXXXXXXKEPICFRTRCVLXXXXXXXXXXXXTVL 1680
            MSCLLPQFKCQPDTFSI FR  ++          E ICFR++CVL             VL
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRAHHSHHSKHK----ESICFRSQCVLSTTSSTSMATTA-VL 55

Query: 1679 DVEKLRLPSLEAYSNAVAANRQWTYFGAVGPPTEESFGPXXXXXXXXXXXSXXXXXXXXX 1500
            DVEKLRLPS EA+SN+V  +R WTY GA GPP+E SFG                      
Sbjct: 56   DVEKLRLPSFEAHSNSVVTDRPWTYTGATGPPSEASFGATLATENLLTSDEAVIAAAAAE 115

Query: 1499 XXXXXXXXXXXXXXA-LMVNNQNSTKPNSKPAISSSADNNTSMWAQLTEQERASIIGDSM 1323
                          A +MV N  S K   K   SS+ D  TS W   TE ERA I+GD +
Sbjct: 116  AVALARAAAKVAKDAAIMVKNHGSAKTEMKSPGSSATDTLTSKWGLFTEAERAGIVGDYV 175

Query: 1322 TVETGPEEEYSEQQPLKESVVSEPTHXXXXXXXXXXXXSIAVRSRRQXXXXXXXXXXXXX 1143
            + E   EE++ EQ   KES   EPT+            SIAVRS RQ             
Sbjct: 176  SDELELEEDHLEQNSTKESDELEPTNEELKLLEEQLSRSIAVRSHRQTERKAKRTRAAEK 235

Query: 1142 XXANVVSVNSGSTGRRKRASVQEVDYSDPLRYLRATTNTSRLLTATEELQLSEGIQDLLK 963
               NVVSV SGST R++R ++Q++DYSDPLRYLR TTNTS+LLTA EEL+LSEGIQDLLK
Sbjct: 236  AATNVVSVKSGSTNRKRRGALQDIDYSDPLRYLRGTTNTSKLLTANEELELSEGIQDLLK 295

Query: 962  LEGLHEVLSERCGGSPTFTQWAAAAGVDRKELRRRLNYGILCKDKMIKSNIRLVISIAKN 783
            LEGLHE L+ERCG  PTF QWAAAA VDRK LR RLNYG +C DKMIKSNIRLVISIAKN
Sbjct: 296  LEGLHEELAERCGRPPTFAQWAAAAEVDRKTLRERLNYGTICMDKMIKSNIRLVISIAKN 355

Query: 782  YQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLTDQSRTIRLP 603
            YQGAGMNL+DLVQEGCRGL+RGAEKFDASKGFKFSTYAHWWIKQAVRKSL+DQSRTIRLP
Sbjct: 356  YQGAGMNLQDLVQEGCRGLIRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 415

Query: 602  FHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLESILLTPKAPKSLDQKIGI 423
            FHMVEATYRVKEARKQL+SENGR P+N EVAEATGLSMKRL ++LL PKAP+SLDQKIGI
Sbjct: 416  FHMVEATYRVKEARKQLFSENGRQPDNIEVAEATGLSMKRLTAVLLAPKAPRSLDQKIGI 475

Query: 422  NQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNLREKQVVRWRFGLDDGRMKTL 243
            NQNLKPS                  FMK+DLEKVLD+L+ RE+QV+RWRFG++DGR+KTL
Sbjct: 476  NQNLKPS------------------FMKKDLEKVLDSLSPRERQVIRWRFGMEDGRVKTL 517

Query: 242  QEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLLQYVIT 123
            QEIGE MGVSRERIRQIE  AFRKLKNK+RTKHL QY+++
Sbjct: 518  QEIGESMGVSRERIRQIELCAFRKLKNKRRTKHLQQYLLS 557


>ref|XP_002319746.2| SIGMA FACTOR B family protein [Populus trichocarpa]
            gi|550325142|gb|EEE95669.2| SIGMA FACTOR B family protein
            [Populus trichocarpa]
          Length = 567

 Score =  664 bits (1713), Expect = 0.0
 Identities = 356/579 (61%), Positives = 416/579 (71%), Gaps = 1/579 (0%)
 Frame = -2

Query: 1859 MSCLLPQFKCQPDTFSIHFRTLYNXXXXXXXXXKEPICFRTRCVLXXXXXXXXXXXXTVL 1680
            MSCLLPQFKCQPDTFS+HFR L +                 +CVL             VL
Sbjct: 1    MSCLLPQFKCQPDTFSVHFRNLQHHGTNHTQLP--------QCVLSSASPSTA-----VL 47

Query: 1679 DVEKLRLPSLEAYSNAVAANRQWTYFGAVGPPTEESFGPXXXXXXXXXXXSXXXXXXXXX 1500
            D+EKLRLPSLE +S++++ANR WTY G +GP  +  FG                      
Sbjct: 48   DLEKLRLPSLEPHSDSISANRPWTYIGGIGPQKKPPFGTSLAAETLIANDEAVIAAAAAE 107

Query: 1499 XXXXXXXXXXXXXXAL-MVNNQNSTKPNSKPAISSSADNNTSMWAQLTEQERASIIGDSM 1323
                          A  M  N +  K  +K  I+S+ D+ +SMW+ LTE+ERA IIGDS+
Sbjct: 108  AVALARAAVKVAKDAAEMAKNYSFMKKETKIPIASTTDSFSSMWSLLTEKERADIIGDSV 167

Query: 1322 TVETGPEEEYSEQQPLKESVVSEPTHXXXXXXXXXXXXSIAVRSRRQXXXXXXXXXXXXX 1143
            + ET   EEYS Q P +E    EPT              IAVRS+RQ             
Sbjct: 168  SAETRLREEYSVQYPTEEYDCLEPTQEELALLQKQLSEGIAVRSKRQTERKARRARAAEK 227

Query: 1142 XXANVVSVNSGSTGRRKRASVQEVDYSDPLRYLRATTNTSRLLTATEELQLSEGIQDLLK 963
              ANVVSV SGST ++KR  +QEVD SDPLR+ R  +++SRLL+ATEE++LSEGIQDLLK
Sbjct: 228  AAANVVSVKSGSTSKKKRVPLQEVDQSDPLRFFRGASSSSRLLSATEEVELSEGIQDLLK 287

Query: 962  LEGLHEVLSERCGGSPTFTQWAAAAGVDRKELRRRLNYGILCKDKMIKSNIRLVISIAKN 783
            LE + E L ER GG P+F QWAAAAGVD+  LR+RLNYGILCKDKMIKSN+RLVISIAKN
Sbjct: 288  LERIEEELKERFGGEPSFAQWAAAAGVDQLTLRKRLNYGILCKDKMIKSNVRLVISIAKN 347

Query: 782  YQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLTDQSRTIRLP 603
            YQG GMNL+DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL+D+SRTIRLP
Sbjct: 348  YQGTGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDRSRTIRLP 407

Query: 602  FHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLESILLTPKAPKSLDQKIGI 423
            FHMV+ATYRVKEARKQLYSENGRHP+++EVAEA GLSMKRL ++LLTPKAP+SLDQK+G 
Sbjct: 408  FHMVDATYRVKEARKQLYSENGRHPDDKEVAEAAGLSMKRLSAVLLTPKAPRSLDQKMGF 467

Query: 422  NQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNLREKQVVRWRFGLDDGRMKTL 243
            N +LK SEV ADPEAETAEDLL+K+FMK+DL KVL +L+ RE QVVRWRFG++DGRMKTL
Sbjct: 468  NMDLKLSEVTADPEAETAEDLLMKEFMKKDLAKVLGSLSPRENQVVRWRFGMEDGRMKTL 527

Query: 242  QEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLLQYVI 126
            QEIGELMGVSRER+RQIE SAFRKLKNK RTK L QY++
Sbjct: 528  QEIGELMGVSRERVRQIELSAFRKLKNKNRTKQLRQYMV 566


>gb|AKC88655.1| sigma factor [Francoa sonchifolia]
          Length = 562

 Score =  662 bits (1708), Expect = 0.0
 Identities = 366/582 (62%), Positives = 414/582 (71%), Gaps = 3/582 (0%)
 Frame = -2

Query: 1859 MSCLLPQFKCQPDTFSIHFRTLYNXXXXXXXXXKEPICFRTRCVLXXXXXXXXXXXXTVL 1680
            M+CLLPQF   P+TF IH    Y          ++ + FR +C+L             VL
Sbjct: 1    MACLLPQFNRPPETFFIHS---YTIPLSLLPRNRQTLYFRAQCILSTTSPPTPT----VL 53

Query: 1679 DVEKLRLPSLEAYSNAVAANRQWTYFGAVGPPTEESFGPXXXXXXXXXXXSXXXXXXXXX 1500
            D+EKLR+P           NR WTY  ++ PPT  +                        
Sbjct: 54   DMEKLRMP----------VNRPWTYIPSIAPPTGPNIETTIASENLLTSNDALIAAAAAE 103

Query: 1499 XXXXXXXXXXXXXXA-LMVNNQNSTKPNSKPAISSSADNNTSMWA--QLTEQERASIIGD 1329
                          A LMVN+ NS     KP +SS  D   ++W+  QLT+ ER  IIG+
Sbjct: 104  VVALARAAVKVANDAVLMVNSYNSANVEIKPQVSSKFD---TLWSKVQLTQAERIGIIGE 160

Query: 1328 SMTVETGPEEEYSEQQPLKESVVSEPTHXXXXXXXXXXXXSIAVRSRRQXXXXXXXXXXX 1149
            S+  +TG  E  S +  + ES V E TH            +IAVRSRRQ           
Sbjct: 161  SIGAKTGVGEVCSMENVITESDVLEQTHEKLELLQEQLSKTIAVRSRRQIERKARRGRAA 220

Query: 1148 XXXXANVVSVNSGSTGRRKRASVQEVDYSDPLRYLRATTNTSRLLTATEELQLSEGIQDL 969
                ANVVSV SGST R+KR S+Q+VDYSDPLRYLR TT+TSRLLT+TEE +LS GIQDL
Sbjct: 221  EKAAANVVSVKSGSTNRKKRGSIQDVDYSDPLRYLRGTTSTSRLLTSTEEHELSAGIQDL 280

Query: 968  LKLEGLHEVLSERCGGSPTFTQWAAAAGVDRKELRRRLNYGILCKDKMIKSNIRLVISIA 789
            LKLE L E L ERCG  PTF QWAAAA VD K LRRRLNYGI+CKDKMIKSNIRLVISIA
Sbjct: 281  LKLERLEEELVERCGCQPTFAQWAAAARVDNKTLRRRLNYGIVCKDKMIKSNIRLVISIA 340

Query: 788  KNYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLTDQSRTIR 609
            KNYQGAGMNL+DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL+DQSRTIR
Sbjct: 341  KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 400

Query: 608  LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLESILLTPKAPKSLDQKI 429
            LPFHMVEATYRVKEARKQLYSENGRHPNNEEVA+ATGLSMKRL ++LLTPKAP+SLDQKI
Sbjct: 401  LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAKATGLSMKRLTAVLLTPKAPRSLDQKI 460

Query: 428  GINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNLREKQVVRWRFGLDDGRMK 249
            GINQNLKPSE+IADPEAET ED+L+K+FMKEDL+KVL++LN REKQVVRWRFGL+DGRMK
Sbjct: 461  GINQNLKPSEIIADPEAETTEDILMKQFMKEDLDKVLNSLNPREKQVVRWRFGLEDGRMK 520

Query: 248  TLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLLQYVIT 123
            TLQEIGELMGVSRERIRQIES AFRKLKNK+RTKHL QYV++
Sbjct: 521  TLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYVVS 562


>ref|XP_011004934.1| PREDICTED: RNA polymerase sigma factor sigB-like [Populus euphratica]
          Length = 567

 Score =  662 bits (1707), Expect = 0.0
 Identities = 354/580 (61%), Positives = 418/580 (72%), Gaps = 1/580 (0%)
 Frame = -2

Query: 1859 MSCLLPQFKCQPDTFSIHFRTLYNXXXXXXXXXKEPICFRTRCVLXXXXXXXXXXXXTVL 1680
            MSCLLPQFKCQPDTFSIHFR L +                 +CVL             VL
Sbjct: 1    MSCLLPQFKCQPDTFSIHFRNLQHHGTNHTQLP--------QCVLSSASPSTA-----VL 47

Query: 1679 DVEKLRLPSLEAYSNAVAANRQWTYFGAVGPPTEESFGPXXXXXXXXXXXSXXXXXXXXX 1500
            D+EKLRLPSLE +S++++ANR WTY G +GP  +  F                       
Sbjct: 48   DLEKLRLPSLEPHSDSISANRPWTYIGGIGPQKKPPFETSLAAETLIADDEAVIAAAAAE 107

Query: 1499 XXXXXXXXXXXXXXAL-MVNNQNSTKPNSKPAISSSADNNTSMWAQLTEQERASIIGDSM 1323
                          A  M  N +S K  +K  I+S+ D+ +SMW+ LTE+ERA IIGDS+
Sbjct: 108  AVALARAAVKVAKDAAEMAKNYSSLKKETKIPIASTTDSFSSMWSLLTEKERADIIGDSV 167

Query: 1322 TVETGPEEEYSEQQPLKESVVSEPTHXXXXXXXXXXXXSIAVRSRRQXXXXXXXXXXXXX 1143
            + ET   E+YS Q P +E    EPT              IAVRS+RQ             
Sbjct: 168  SAETRLREDYSVQYPTEEYDCLEPTQEELALLQKQLSEGIAVRSKRQTERKARRARAAEK 227

Query: 1142 XXANVVSVNSGSTGRRKRASVQEVDYSDPLRYLRATTNTSRLLTATEELQLSEGIQDLLK 963
              ANVVSV SGS+ ++KR  +QEVD SDPLR+ R  +++SRLL+ATEE++LSEGIQDLLK
Sbjct: 228  ASANVVSVKSGSSSKKKRVPLQEVDQSDPLRFFRGASSSSRLLSATEEVELSEGIQDLLK 287

Query: 962  LEGLHEVLSERCGGSPTFTQWAAAAGVDRKELRRRLNYGILCKDKMIKSNIRLVISIAKN 783
            LE + E L ER GG P+F QWAAAAGVD+  LR+R+NYGILCKDKMIKSN+RLVISIAKN
Sbjct: 288  LERIEEELKERFGGEPSFAQWAAAAGVDQLTLRKRINYGILCKDKMIKSNVRLVISIAKN 347

Query: 782  YQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLTDQSRTIRLP 603
            YQG GMNL+DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL+D+SRTIRLP
Sbjct: 348  YQGTGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDRSRTIRLP 407

Query: 602  FHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLESILLTPKAPKSLDQKIGI 423
            FHMV+ATYRVKEARKQLY+ENGRHP+++EVAEA GLSMKRL ++LLTPKAP+SLDQK+G 
Sbjct: 408  FHMVDATYRVKEARKQLYTENGRHPDDKEVAEAAGLSMKRLSAVLLTPKAPRSLDQKMGF 467

Query: 422  NQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNLREKQVVRWRFGLDDGRMKTL 243
            N +LK SEV ADPEAETAEDLL+K+FMK+DLEKVL +L+ RE QVVRWRFG++DGRMKTL
Sbjct: 468  NMDLKLSEVTADPEAETAEDLLMKEFMKKDLEKVLGSLSPRENQVVRWRFGMEDGRMKTL 527

Query: 242  QEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLLQYVIT 123
            QEIGELMGVSRER+RQIE SAFRKLKNK RTK L QY+++
Sbjct: 528  QEIGELMGVSRERVRQIELSAFRKLKNKNRTKQLRQYMVS 567


>ref|XP_008240611.1| PREDICTED: RNA polymerase sigma factor sigB [Prunus mume]
          Length = 643

 Score =  661 bits (1705), Expect = 0.0
 Identities = 353/546 (64%), Positives = 404/546 (73%), Gaps = 1/546 (0%)
 Frame = -2

Query: 1757 EPICFRTRCVLXXXXXXXXXXXXTVLDVEKLRLPSLEAYSNAVAANRQWTYFGAVGPPTE 1578
            +P+CFR + +L            TVLDVEKLRLPSLE  S+++AANR WTY GA GPP E
Sbjct: 98   DPLCFRAQSILSTASRSTSTGTTTVLDVEKLRLPSLEVNSDSLAANRPWTYTGATGPPIE 157

Query: 1577 ESFGPXXXXXXXXXXXSXXXXXXXXXXXXXXXXXXXXXXXA-LMVNNQNSTKPNSKPAIS 1401
             +FG                                      L+V+  +S K  S   +S
Sbjct: 158  ANFGATLATENLLTSEEAVIAAAAAEAVTLAKAALKVAKDVALLVSTNHSAKAESSSPVS 217

Query: 1400 SSADNNTSMWAQLTEQERASIIGDSMTVETGPEEEYSEQQPLKESVVSEPTHXXXXXXXX 1221
               +     WA+  E ++ S +G SM  ET   E +  Q  +KES   E T+        
Sbjct: 218  PKTNALHFKWAKHMETKQPSRLGASMGSETALVENHFIQLAIKESEDVESTNQEFELLQE 277

Query: 1220 XXXXSIAVRSRRQXXXXXXXXXXXXXXXANVVSVNSGSTGRRKRASVQEVDYSDPLRYLR 1041
                 I  RS RQ               A+VVSV SGST R+KRAS+Q+VD+SDPLRYLR
Sbjct: 278  QLSEGITARSSRQIERKARRAKAAEKAAASVVSVKSGSTSRKKRASLQDVDHSDPLRYLR 337

Query: 1040 ATTNTSRLLTATEELQLSEGIQDLLKLEGLHEVLSERCGGSPTFTQWAAAAGVDRKELRR 861
            ATT+TSRLLTA EE++LSEGIQ+LLKLE L E L +RCGG PT  QWAAAAGVD+K LR+
Sbjct: 338  ATTHTSRLLTANEEIELSEGIQELLKLEKLQEELVQRCGGQPTIAQWAAAAGVDQKTLRK 397

Query: 860  RLNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKF 681
            R+NYGILCKDKMIKSNIRLVISIAKNYQGAGMNL+DLVQ+GCRGLVRGAEKFDASKGFKF
Sbjct: 398  RINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQQGCRGLVRGAEKFDASKGFKF 457

Query: 680  STYAHWWIKQAVRKSLTDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEAT 501
            STYAHWWIKQAVRKSL+DQSRTIRLPFHMVEATYRV+EA+KQLYS NGRHPN+EEVAEAT
Sbjct: 458  STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVREAKKQLYSVNGRHPNDEEVAEAT 517

Query: 500  GLSMKRLESILLTPKAPKSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKV 321
            GLSMKRL ++LLTPKAP+SL+QKIGINQNLKPSEVIADP+AETAED+L+KKFMK+DLEKV
Sbjct: 518  GLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPSEVIADPDAETAEDMLMKKFMKQDLEKV 577

Query: 320  LDTLNLREKQVVRWRFGLDDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHL 141
            LD+LN REKQVVRWRFGL+DGRMKTLQEIGELMGVSRERIRQIES AFRKLKNKKRTKHL
Sbjct: 578  LDSLNAREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHL 637

Query: 140  LQYVIT 123
             QYV++
Sbjct: 638  QQYVVS 643