BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zanthoxylum22_contig00007676
         (1854 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KDO48032.1| hypothetical protein CISIN_1g010521mg [Citrus sin...   879   0.0  
ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-...   876   0.0  
ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citr...   876   0.0  
gb|KDO48034.1| hypothetical protein CISIN_1g010521mg [Citrus sin...   853   0.0  
gb|KDO48031.1| hypothetical protein CISIN_1g010521mg [Citrus sin...   818   0.0  
ref|XP_007029766.1| Sigma factor A isoform 1 [Theobroma cacao] g...   784   0.0  
ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...   765   0.0  
ref|XP_012492333.1| PREDICTED: RNA polymerase sigma factor sigA-...   764   0.0  
gb|KHG03684.1| RNA polymerase sigma factor rpoD [Gossypium arbor...   755   0.0  
ref|XP_011012457.1| PREDICTED: RNA polymerase sigma factor sigA ...   754   0.0  
ref|XP_012070278.1| PREDICTED: RNA polymerase sigma factor sigA ...   754   0.0  
ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protei...   751   0.0  
ref|XP_012492331.1| PREDICTED: RNA polymerase sigma factor sigA-...   749   0.0  
gb|KDO48035.1| hypothetical protein CISIN_1g010521mg [Citrus sin...   747   0.0  
gb|AKC88633.1| sigma factor [Melianthus villosus]                     745   0.0  
ref|XP_008234513.1| PREDICTED: RNA polymerase sigma factor sigA ...   737   0.0  
ref|XP_007219023.1| hypothetical protein PRUPE_ppa004393mg [Prun...   733   0.0  
ref|XP_010275189.1| PREDICTED: RNA polymerase sigma factor sigA-...   728   0.0  
gb|AKC88628.1| sigma factor [Francoa sonchifolia]                     724   0.0  
ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor sigA-...   721   0.0  

>gb|KDO48032.1| hypothetical protein CISIN_1g010521mg [Citrus sinensis]
            gi|641828897|gb|KDO48033.1| hypothetical protein
            CISIN_1g010521mg [Citrus sinensis]
          Length = 508

 Score =  879 bits (2272), Expect = 0.0
 Identities = 452/508 (88%), Positives = 471/508 (92%)
 Frame = -3

Query: 1840 MMATAAVIGLSTGKRLLSSSFYYSDISEKLSYINDLGSANSQLGSTKNVVAAKKXXXXXX 1661
            MMATAAVIGLS GKRLLSSSFYYSDISEK SYINDLGSANSQ+GSTKNVVAAKK      
Sbjct: 1    MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP 60

Query: 1660 XXXXXNRQTQSVKALKEHVDANFASTTESWFETSNDIEEESSELDYSVEALLLLQKSMLE 1481
                 NRQTQ +KALKEHVD NFAST E W E  N IEEESSELDYSVEALLLLQKSMLE
Sbjct: 61   SFPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLE 120

Query: 1480 KQWNLSFERTDLTGSPTKKTHKKVSVTYSGVSARQRRVNSKMKILGHNKSVMQHNGSKQL 1301
            KQWNLSFERT LT SP+KKTHKKV VT SGVSARQRR+NSK KIL  NKS++Q NGSKQL
Sbjct: 121  KQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQL 180

Query: 1300 RSMISPELIQYRLKGYVKGVVSDELLTHGEVVRLSKKIKTGLSLDEHKLRLEERLGCEPS 1121
            RSMISPELIQ RLKGYVKGVVS+ELLTH EVVRLSKKIKTGLSLD+HKLRL+ERLGCEPS
Sbjct: 181  RSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPS 240

Query: 1120 VEQLAASLRISRPELQSIMMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI 941
            +EQLAASLRISRPELQSI+MECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI
Sbjct: 241  MEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI 300

Query: 940  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIRL 761
            GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV+NSRTLRLPNHLHERLGLIRNAK+RL
Sbjct: 301  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL 360

Query: 760  EEKGITPSVDRIAEYLNMSQTKVRNATEAMSKVFSLDREAFPSLNGLPGETHHSYIADNC 581
            EEKG+TPSVDRIAEYLNMSQ KVRNATEA+ KVFSLDREAFPSLNGLPGETHHSYIADN 
Sbjct: 361  EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNR 420

Query: 580  VENNPWHGVDNWALKDEVNRLIMATLAEREREIIRLYYGLDKECLTWEDISKRVGLSRER 401
            VENNPWHGVD+WALKDEVN+LI+ TL EREREIIRLYYGLDKECLTWEDISKR+GLSRER
Sbjct: 421  VENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRER 480

Query: 400  VRQVGLVALEKLKHAARKNKMEAMLVKH 317
            VRQVGLVALEKLKHAARK KMEAMLVKH
Sbjct: 481  VRQVGLVALEKLKHAARKKKMEAMLVKH 508


>ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Citrus
            sinensis] gi|568862456|ref|XP_006484699.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X2 [Citrus
            sinensis] gi|568862458|ref|XP_006484700.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X3 [Citrus
            sinensis]
          Length = 508

 Score =  876 bits (2264), Expect = 0.0
 Identities = 452/508 (88%), Positives = 469/508 (92%)
 Frame = -3

Query: 1840 MMATAAVIGLSTGKRLLSSSFYYSDISEKLSYINDLGSANSQLGSTKNVVAAKKXXXXXX 1661
            MMATAAVIGLS GKRLLSSSFYYSDISEK SYINDLGSANSQ+GSTKNVVAAKK      
Sbjct: 1    MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP 60

Query: 1660 XXXXXNRQTQSVKALKEHVDANFASTTESWFETSNDIEEESSELDYSVEALLLLQKSMLE 1481
                 NRQTQ +KALKEHVD NFAST E W E  N IEEESSELDYSVEALLLLQKSMLE
Sbjct: 61   SFPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLE 120

Query: 1480 KQWNLSFERTDLTGSPTKKTHKKVSVTYSGVSARQRRVNSKMKILGHNKSVMQHNGSKQL 1301
            KQWNLSFERT LT SP+KKTHKKV VT SGVSARQRR+NSK KIL  NKSV Q NGSKQL
Sbjct: 121  KQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSVPQQNGSKQL 180

Query: 1300 RSMISPELIQYRLKGYVKGVVSDELLTHGEVVRLSKKIKTGLSLDEHKLRLEERLGCEPS 1121
            RSMISPELIQ  LKGYVKGVVS+ELLTH EVVRLSKKIKTGLSLD+HKLRL+ERLGCEPS
Sbjct: 181  RSMISPELIQNHLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPS 240

Query: 1120 VEQLAASLRISRPELQSIMMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI 941
            +EQLAASLRISRPELQSI+MECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI
Sbjct: 241  MEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI 300

Query: 940  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIRL 761
            GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV+NSRTLRLPNHLHERLGLIRNAK+RL
Sbjct: 301  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL 360

Query: 760  EEKGITPSVDRIAEYLNMSQTKVRNATEAMSKVFSLDREAFPSLNGLPGETHHSYIADNC 581
            EEKG+TPSVDRIAEYLNMSQ KVRNATEA+ KVFSLDREAFPSLNGLPGETHHSYIADN 
Sbjct: 361  EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNR 420

Query: 580  VENNPWHGVDNWALKDEVNRLIMATLAEREREIIRLYYGLDKECLTWEDISKRVGLSRER 401
            VENNPWHGVD+WALKDEVN+LI+ TL EREREIIRLYYGLDKECLTWEDISKR+GLSRER
Sbjct: 421  VENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRER 480

Query: 400  VRQVGLVALEKLKHAARKNKMEAMLVKH 317
            VRQVGLVALEKLKHAARK KMEAMLVKH
Sbjct: 481  VRQVGLVALEKLKHAARKKKMEAMLVKH 508


>ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citrus clementina]
            gi|557539599|gb|ESR50643.1| hypothetical protein
            CICLE_v10031289mg [Citrus clementina]
          Length = 508

 Score =  876 bits (2264), Expect = 0.0
 Identities = 450/508 (88%), Positives = 470/508 (92%)
 Frame = -3

Query: 1840 MMATAAVIGLSTGKRLLSSSFYYSDISEKLSYINDLGSANSQLGSTKNVVAAKKXXXXXX 1661
            MMATAAVIGLS GKRLLSSSFYYSDISEK SYINDLGSANSQ+GSTKNVVAAKK      
Sbjct: 1    MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP 60

Query: 1660 XXXXXNRQTQSVKALKEHVDANFASTTESWFETSNDIEEESSELDYSVEALLLLQKSMLE 1481
                 NRQTQ +KALKEHVD NFAST E W E  N IEEESSELDYSVEALLLLQKSMLE
Sbjct: 61   SFPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLE 120

Query: 1480 KQWNLSFERTDLTGSPTKKTHKKVSVTYSGVSARQRRVNSKMKILGHNKSVMQHNGSKQL 1301
            KQWNLSFERT LT SP+KKTHKKV VT SGVSARQRR+NSK KIL  NKSV+Q NGSKQL
Sbjct: 121  KQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSVLQQNGSKQL 180

Query: 1300 RSMISPELIQYRLKGYVKGVVSDELLTHGEVVRLSKKIKTGLSLDEHKLRLEERLGCEPS 1121
            RSMISPELIQ  LKGYVKGVVS+ELLTH EVVRLSKKIKTGLSLD+HKLRL+ERLGCEPS
Sbjct: 181  RSMISPELIQNHLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPS 240

Query: 1120 VEQLAASLRISRPELQSIMMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI 941
            +EQLAASLRISRPELQSI+MECSLAREKLVMSNVRLVMSIAQRYDNMGADMADL+QGGLI
Sbjct: 241  MEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLIQGGLI 300

Query: 940  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIRL 761
            GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV+NSRTLRLPNHLHERLGLIRNAK+RL
Sbjct: 301  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL 360

Query: 760  EEKGITPSVDRIAEYLNMSQTKVRNATEAMSKVFSLDREAFPSLNGLPGETHHSYIADNC 581
            EEKG+TP+VDRIAEYLNMSQ KVRNATEA+ KVFSLDREAFPSLNGLPGETHHSYIADN 
Sbjct: 361  EEKGVTPAVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNR 420

Query: 580  VENNPWHGVDNWALKDEVNRLIMATLAEREREIIRLYYGLDKECLTWEDISKRVGLSRER 401
            VENNPWHGVD+WALKDEVN+LI+ TL EREREIIRLYYGLDKECLTWEDISKR+GLSRER
Sbjct: 421  VENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRER 480

Query: 400  VRQVGLVALEKLKHAARKNKMEAMLVKH 317
            VRQVGLVALEKLKHAARK KMEAMLVKH
Sbjct: 481  VRQVGLVALEKLKHAARKKKMEAMLVKH 508


>gb|KDO48034.1| hypothetical protein CISIN_1g010521mg [Citrus sinensis]
          Length = 499

 Score =  853 bits (2205), Expect = 0.0
 Identities = 443/508 (87%), Positives = 462/508 (90%)
 Frame = -3

Query: 1840 MMATAAVIGLSTGKRLLSSSFYYSDISEKLSYINDLGSANSQLGSTKNVVAAKKXXXXXX 1661
            MMATAAVIGLS GKRLLSSSFYYSDISEK SYINDLGSANSQ+GSTKNVVAAKK      
Sbjct: 1    MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP 60

Query: 1660 XXXXXNRQTQSVKALKEHVDANFASTTESWFETSNDIEEESSELDYSVEALLLLQKSMLE 1481
                 NRQTQ +KALKEHVD NFAST E W E  N IEEESSELDYSVEALLLLQKSMLE
Sbjct: 61   SFPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLE 120

Query: 1480 KQWNLSFERTDLTGSPTKKTHKKVSVTYSGVSARQRRVNSKMKILGHNKSVMQHNGSKQL 1301
            KQWNLSFERT LT SP+KKTHKKV VT SGVSARQRR+NSK KIL  NKS++Q NGSKQL
Sbjct: 121  KQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQL 180

Query: 1300 RSMISPELIQYRLKGYVKGVVSDELLTHGEVVRLSKKIKTGLSLDEHKLRLEERLGCEPS 1121
            RSMISPELIQ RLKGYVKGVVS+ELLTH EVVRLSKKIKTGLSLD+HKLRL+ERLG    
Sbjct: 181  RSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG---- 236

Query: 1120 VEQLAASLRISRPELQSIMMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI 941
                 +SLRISRPELQSI+MECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI
Sbjct: 237  -----SSLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI 291

Query: 940  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIRL 761
            GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV+NSRTLRLPNHLHERLGLIRNAK+RL
Sbjct: 292  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL 351

Query: 760  EEKGITPSVDRIAEYLNMSQTKVRNATEAMSKVFSLDREAFPSLNGLPGETHHSYIADNC 581
            EEKG+TPSVDRIAEYLNMSQ KVRNATEA+ KVFSLDREAFPSLNGLPGETHHSYIADN 
Sbjct: 352  EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNR 411

Query: 580  VENNPWHGVDNWALKDEVNRLIMATLAEREREIIRLYYGLDKECLTWEDISKRVGLSRER 401
            VENNPWHGVD+WALKDEVN+LI+ TL EREREIIRLYYGLDKECLTWEDISKR+GLSRER
Sbjct: 412  VENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRER 471

Query: 400  VRQVGLVALEKLKHAARKNKMEAMLVKH 317
            VRQVGLVALEKLKHAARK KMEAMLVKH
Sbjct: 472  VRQVGLVALEKLKHAARKKKMEAMLVKH 499


>gb|KDO48031.1| hypothetical protein CISIN_1g010521mg [Citrus sinensis]
          Length = 485

 Score =  818 bits (2113), Expect = 0.0
 Identities = 428/508 (84%), Positives = 448/508 (88%)
 Frame = -3

Query: 1840 MMATAAVIGLSTGKRLLSSSFYYSDISEKLSYINDLGSANSQLGSTKNVVAAKKXXXXXX 1661
            MMATAAVIGLS GKRLLSSSFYYSDISEK SYINDLGSANSQ+GSTKNVVAAKK      
Sbjct: 1    MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP 60

Query: 1660 XXXXXNRQTQSVKALKEHVDANFASTTESWFETSNDIEEESSELDYSVEALLLLQKSMLE 1481
                 NRQTQ +KALKEHVD NFAST E W E  N IEEESSELDYSVEALLLLQKSMLE
Sbjct: 61   SFPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLE 120

Query: 1480 KQWNLSFERTDLTGSPTKKTHKKVSVTYSGVSARQRRVNSKMKILGHNKSVMQHNGSKQL 1301
            KQWNLSFERT LT SP+KKTHKKV VT SGVSARQRR+NSK KIL  NKS++Q NGSKQL
Sbjct: 121  KQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQL 180

Query: 1300 RSMISPELIQYRLKGYVKGVVSDELLTHGEVVRLSKKIKTGLSLDEHKLRLEERLGCEPS 1121
            RSMISPELIQ RLKGYVKGVVS+ELLTH EVVRLSKKIKTGLSLD+HKLRL+ERLGCEPS
Sbjct: 181  RSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPS 240

Query: 1120 VEQLAASLRISRPELQSIMMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI 941
            +EQLAASLRISRPELQSI+MECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI
Sbjct: 241  MEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI 300

Query: 940  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIRL 761
            GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV+NSRTLRLPNHLHERLGLIRNAK+RL
Sbjct: 301  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL 360

Query: 760  EEKGITPSVDRIAEYLNMSQTKVRNATEAMSKVFSLDREAFPSLNGLPGETHHSYIADNC 581
            EEKG+TPSVDRIAEYLNMSQ KVRNATE +                       +YIADN 
Sbjct: 361  EEKGVTPSVDRIAEYLNMSQKKVRNATEVL-----------------------AYIADNR 397

Query: 580  VENNPWHGVDNWALKDEVNRLIMATLAEREREIIRLYYGLDKECLTWEDISKRVGLSRER 401
            VENNPWHGVD+WALKDEVN+LI+ TL EREREIIRLYYGLDKECLTWEDISKR+GLSRER
Sbjct: 398  VENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRER 457

Query: 400  VRQVGLVALEKLKHAARKNKMEAMLVKH 317
            VRQVGLVALEKLKHAARK KMEAMLVKH
Sbjct: 458  VRQVGLVALEKLKHAARKKKMEAMLVKH 485


>ref|XP_007029766.1| Sigma factor A isoform 1 [Theobroma cacao]
            gi|508718371|gb|EOY10268.1| Sigma factor A isoform 1
            [Theobroma cacao]
          Length = 508

 Score =  784 bits (2024), Expect = 0.0
 Identities = 409/509 (80%), Positives = 448/509 (88%), Gaps = 1/509 (0%)
 Frame = -3

Query: 1840 MMATAAVIGLSTGKRLLSSSFYYSDISEKLSYINDLGSANSQLGSTKNVVAAKKXXXXXX 1661
            MMATAAVIGL+TGKRLLSSSF YSDI EKLSY ND GS++ Q  STK+++ AKK      
Sbjct: 1    MMATAAVIGLTTGKRLLSSSFSYSDIIEKLSYANDYGSSHHQTSSTKSLIVAKKSSNCSQ 60

Query: 1660 XXXXXNRQTQSVKALKEHVD-ANFASTTESWFETSNDIEEESSELDYSVEALLLLQKSML 1484
                 NR+ QS+KALKEHVD A+  ST E  F+ SND+E ES +LDYSVEALLLLQKSML
Sbjct: 61   SLPSSNRRAQSIKALKEHVDSASIVSTAEPLFQGSNDLEVESYDLDYSVEALLLLQKSML 120

Query: 1483 EKQWNLSFERTDLTGSPTKKTHKKVSVTYSGVSARQRRVNSKMKILGHNKSVMQHNGSKQ 1304
            EKQW LSFERT  T SP++K HKK+ VT SGVSARQRR N+K KIL  NKS++Q N +KQ
Sbjct: 121  EKQWTLSFERTVFTESPSRKIHKKIPVTCSGVSARQRRFNTKRKILIQNKSIIQPN-AKQ 179

Query: 1303 LRSMISPELIQYRLKGYVKGVVSDELLTHGEVVRLSKKIKTGLSLDEHKLRLEERLGCEP 1124
            LRS+ISPEL+Q RLKGYVKGVVSDELL+H EVVRLSKKIK GLSL+EH+LRL+ERLGCEP
Sbjct: 180  LRSLISPELLQSRLKGYVKGVVSDELLSHAEVVRLSKKIKAGLSLEEHRLRLKERLGCEP 239

Query: 1123 SVEQLAASLRISRPELQSIMMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGL 944
            S EQLA SL+ISR EL+S ++ECSLAREKL MSNVRLVMSIAQRYDNMGA+M+DL+QGGL
Sbjct: 240  SDEQLATSLKISRAELRSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLIQGGL 299

Query: 943  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIR 764
            IGLLRGIEKFDSSKG+KISTYVYWWIRQGVSRALV+NSRTLRLP HLHERLGLIRNAKIR
Sbjct: 300  IGLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKIR 359

Query: 763  LEEKGITPSVDRIAEYLNMSQTKVRNATEAMSKVFSLDREAFPSLNGLPGETHHSYIADN 584
            LEEKGITP++DRIAE LNMSQ KVRNATEA+SKVFSLDR+AFPSLNGLPGETHHSYIADN
Sbjct: 360  LEEKGITPTIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADN 419

Query: 583  CVENNPWHGVDNWALKDEVNRLIMATLAEREREIIRLYYGLDKECLTWEDISKRVGLSRE 404
             VEN PWHGVD WALKDEVNRLI  TL EREREIIRLYYGLDKE LTWEDISKR+GLSRE
Sbjct: 420  HVENIPWHGVDEWALKDEVNRLITITLGEREREIIRLYYGLDKESLTWEDISKRIGLSRE 479

Query: 403  RVRQVGLVALEKLKHAARKNKMEAMLVKH 317
            RVRQVGLVALEKLKHAARK KMEAMLVKH
Sbjct: 480  RVRQVGLVALEKLKHAARKKKMEAMLVKH 508


>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 508

 Score =  765 bits (1975), Expect = 0.0
 Identities = 394/508 (77%), Positives = 443/508 (87%), Gaps = 1/508 (0%)
 Frame = -3

Query: 1837 MATAAVIGLSTGKRLLSSSFYYSDISEKLSYINDLGSANSQLGSTKNVVAAKKXXXXXXX 1658
            MATAAVIGLS GKRLLSS+FYYSD++EKLS  N+ G  + Q+ STK ++ AKK       
Sbjct: 1    MATAAVIGLSAGKRLLSSTFYYSDLTEKLSSANEHGLTHYQITSTKTLIVAKKSSNYGPS 60

Query: 1657 XXXXNRQTQSVKALKEHVD-ANFASTTESWFETSNDIEEESSELDYSVEALLLLQKSMLE 1481
                NR TQS+KALKEHVD A+  ST  + F+T ND+EEESS+LDYSVEALLLLQKSMLE
Sbjct: 61   FPSSNRNTQSIKALKEHVDTASAPSTAATQFKTFNDMEEESSDLDYSVEALLLLQKSMLE 120

Query: 1480 KQWNLSFERTDLTGSPTKKTHKKVSVTYSGVSARQRRVNSKMKILGHNKSVMQHNGSKQL 1301
            KQWNLSFERTD + SP++K+ KK+ VT SGVSARQRR+N + K L  +K  +Q N  KQL
Sbjct: 121  KQWNLSFERTDSSDSPSRKSQKKIPVTCSGVSARQRRINIRRKNLSQSKFTVQANVFKQL 180

Query: 1300 RSMISPELIQYRLKGYVKGVVSDELLTHGEVVRLSKKIKTGLSLDEHKLRLEERLGCEPS 1121
            +S +SPEL+Q RLKGYVKGVVS+ELL+H EVVRLS+ IK GLSL++HK RL+ERLGC+PS
Sbjct: 181  KSAVSPELLQNRLKGYVKGVVSEELLSHAEVVRLSRIIKAGLSLEDHKSRLKERLGCDPS 240

Query: 1120 VEQLAASLRISRPELQSIMMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI 941
             EQ+A SL+ISR ELQS  + CSLAREKL MSNVRLVMSIAQRYDNMGA+MADLVQGGLI
Sbjct: 241  DEQVATSLKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300

Query: 940  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIRL 761
            GLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLPNHLHERLGLIRNAKIRL
Sbjct: 301  GLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKIRL 360

Query: 760  EEKGITPSVDRIAEYLNMSQTKVRNATEAMSKVFSLDREAFPSLNGLPGETHHSYIADNC 581
            EEKG+TPS+DRIAE LN+SQ KVRNATEA+SKVFSLDREAFPSLNGLPGETHHSYIADNC
Sbjct: 361  EEKGVTPSIDRIAESLNISQKKVRNATEAVSKVFSLDREAFPSLNGLPGETHHSYIADNC 420

Query: 580  VENNPWHGVDNWALKDEVNRLIMATLAEREREIIRLYYGLDKECLTWEDISKRVGLSRER 401
            +ENNPWHGVD+WALKDEVN+LI  TL ERE+EIIRLYYGLD E LTWEDISKR+GLSRER
Sbjct: 421  LENNPWHGVDDWALKDEVNKLINLTLQEREQEIIRLYYGLDNESLTWEDISKRIGLSRER 480

Query: 400  VRQVGLVALEKLKHAARKNKMEAMLVKH 317
            VRQVGLVALEKLKHAARK K+EAMLVKH
Sbjct: 481  VRQVGLVALEKLKHAARKKKLEAMLVKH 508


>ref|XP_012492333.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X2
            [Gossypium raimondii] gi|763777227|gb|KJB44350.1|
            hypothetical protein B456_007G247500 [Gossypium
            raimondii]
          Length = 508

 Score =  764 bits (1973), Expect = 0.0
 Identities = 397/509 (77%), Positives = 441/509 (86%), Gaps = 1/509 (0%)
 Frame = -3

Query: 1840 MMATAAVIGLSTGKRLLSSSFYYSDISEKLSYINDLGSANSQLGSTKNVVAAKKXXXXXX 1661
            MMATAAVIGLSTGKRLLSSSF YS+  +KLSY  D GS+  Q  STK ++ AK+      
Sbjct: 1    MMATAAVIGLSTGKRLLSSSFSYSETVDKLSYAGDYGSSYYQTPSTKTLMVAKRSSNCSQ 60

Query: 1660 XXXXXNRQTQSVKALKEHVD-ANFASTTESWFETSNDIEEESSELDYSVEALLLLQKSML 1484
                 NR TQS+KA KEHVD A+  ST E W   +ND+E+ES +LDYSVEALLLLQKSML
Sbjct: 61   NLPSSNRHTQSIKAFKEHVDTASSISTVEPWIHGTNDLEQESYDLDYSVEALLLLQKSML 120

Query: 1483 EKQWNLSFERTDLTGSPTKKTHKKVSVTYSGVSARQRRVNSKMKILGHNKSVMQHNGSKQ 1304
            EKQW LSFERT  T SP++KTH KV VT SGVSARQRR ++K KIL  NKS++Q N +KQ
Sbjct: 121  EKQWTLSFERTMFTESPSRKTHNKVPVTCSGVSARQRRFSTKRKILSQNKSMIQPN-AKQ 179

Query: 1303 LRSMISPELIQYRLKGYVKGVVSDELLTHGEVVRLSKKIKTGLSLDEHKLRLEERLGCEP 1124
            LRS+I PEL+Q RLKGYVKGVVS++LL+H EVVRLS+KIK GLSL+EH+LRL+ERLGCEP
Sbjct: 180  LRSLIGPELLQNRLKGYVKGVVSEDLLSHAEVVRLSRKIKAGLSLEEHRLRLKERLGCEP 239

Query: 1123 SVEQLAASLRISRPELQSIMMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGL 944
            S EQLA SL++SR EL+S  +ECSLAREKL MSNVRLVMSIAQRYDNMGA+M+DL+QGGL
Sbjct: 240  SDEQLATSLKVSRAELRSRSIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLIQGGL 299

Query: 943  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIR 764
            IGLLRGIEKFDSSKG+KISTYVYWWIRQGVSRALV+NSRTLRLP +LHERLGLIRNAK R
Sbjct: 300  IGLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLGLIRNAKYR 359

Query: 763  LEEKGITPSVDRIAEYLNMSQTKVRNATEAMSKVFSLDREAFPSLNGLPGETHHSYIADN 584
            LEEKGITP++DRIAE LNMSQ KVRNATEA+SKVFSLDR+AFPSLNGLPGETHHSYIADN
Sbjct: 360  LEEKGITPTIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADN 419

Query: 583  CVENNPWHGVDNWALKDEVNRLIMATLAEREREIIRLYYGLDKECLTWEDISKRVGLSRE 404
             VENNPWHGVD WALKDEVNRLI  TL EREREIIRLY+GLDKE LTWEDISKR+GLSRE
Sbjct: 420  HVENNPWHGVDEWALKDEVNRLINITLGEREREIIRLYHGLDKESLTWEDISKRIGLSRE 479

Query: 403  RVRQVGLVALEKLKHAARKNKMEAMLVKH 317
            RVRQVGLVALEKLKHAARK KMEAMLVKH
Sbjct: 480  RVRQVGLVALEKLKHAARKKKMEAMLVKH 508


>gb|KHG03684.1| RNA polymerase sigma factor rpoD [Gossypium arboreum]
            gi|728838604|gb|KHG18047.1| RNA polymerase sigma factor
            rpoD [Gossypium arboreum]
          Length = 508

 Score =  755 bits (1949), Expect = 0.0
 Identities = 395/509 (77%), Positives = 436/509 (85%), Gaps = 1/509 (0%)
 Frame = -3

Query: 1840 MMATAAVIGLSTGKRLLSSSFYYSDISEKLSYINDLGSANSQLGSTKNVVAAKKXXXXXX 1661
            MMATAAVIGLSTGKRLLSSSF YS+  +KLSY  D GS+  Q  STK ++ AK+      
Sbjct: 1    MMATAAVIGLSTGKRLLSSSFSYSETVDKLSYAGDYGSSYYQTPSTKTLIVAKRSSNCSQ 60

Query: 1660 XXXXXNRQTQSVKALKEHVD-ANFASTTESWFETSNDIEEESSELDYSVEALLLLQKSML 1484
                 NR TQ +KA K HVD A+  ST E W   +ND+E+ES +LD SVEALLLLQKSML
Sbjct: 61   NLPSSNRHTQLIKAFKGHVDTASSISTVEPWIHGANDLEQESYDLDCSVEALLLLQKSML 120

Query: 1483 EKQWNLSFERTDLTGSPTKKTHKKVSVTYSGVSARQRRVNSKMKILGHNKSVMQHNGSKQ 1304
            EKQW LSFERT    SP++KTH KV VT SGVSARQRR N+K KIL  NKS++Q N +KQ
Sbjct: 121  EKQWTLSFERTMFIESPSRKTHSKVPVTCSGVSARQRRFNTKRKILSQNKSMIQPN-AKQ 179

Query: 1303 LRSMISPELIQYRLKGYVKGVVSDELLTHGEVVRLSKKIKTGLSLDEHKLRLEERLGCEP 1124
            LRS+I PEL+Q RLKGYVKGVVS++LL+H EVVRLSKKIK GLSL+EH LRL+ERLGCEP
Sbjct: 180  LRSLIGPELLQNRLKGYVKGVVSEDLLSHAEVVRLSKKIKAGLSLEEHILRLKERLGCEP 239

Query: 1123 SVEQLAASLRISRPELQSIMMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGL 944
            S EQLA SL++SR EL+S  +ECSLAREKL MSNVRLVMSIAQRYDNMGA+M+DL+QGGL
Sbjct: 240  SDEQLATSLKVSRAELRSRSIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLIQGGL 299

Query: 943  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIR 764
            IGLLRGIEKFDSSKG+KISTYVYWWIRQGVSRALV+NSRTLRLP +LHERLGLIRNAK R
Sbjct: 300  IGLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLGLIRNAKYR 359

Query: 763  LEEKGITPSVDRIAEYLNMSQTKVRNATEAMSKVFSLDREAFPSLNGLPGETHHSYIADN 584
            LEEKGITP++DRIAE LNMSQ KVRNATEA+SKVFSLDR+AFPSLNGLPGETHHSYIADN
Sbjct: 360  LEEKGITPTIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADN 419

Query: 583  CVENNPWHGVDNWALKDEVNRLIMATLAEREREIIRLYYGLDKECLTWEDISKRVGLSRE 404
             VENNPWHGVD WALKDEVNRLI  TL EREREIIRLY+GLDKE LTWEDISKR+GLSRE
Sbjct: 420  HVENNPWHGVDEWALKDEVNRLIDITLGEREREIIRLYHGLDKESLTWEDISKRIGLSRE 479

Query: 403  RVRQVGLVALEKLKHAARKNKMEAMLVKH 317
            RVRQVGLVALEKLKHAARK KMEAMLVKH
Sbjct: 480  RVRQVGLVALEKLKHAARKKKMEAMLVKH 508


>ref|XP_011012457.1| PREDICTED: RNA polymerase sigma factor sigA [Populus euphratica]
            gi|743936142|ref|XP_011012458.1| PREDICTED: RNA
            polymerase sigma factor sigA [Populus euphratica]
          Length = 509

 Score =  754 bits (1947), Expect = 0.0
 Identities = 391/509 (76%), Positives = 439/509 (86%), Gaps = 1/509 (0%)
 Frame = -3

Query: 1840 MMATAAVIGLSTGKRLLSSSFYYSDISEKLSYINDLGSANSQLGSTKNVVAAKKXXXXXX 1661
            MMATAAVIGLSTGKRLLSSSFYYSD++EKLS +ND G       +TKNVV AKK      
Sbjct: 1    MMATAAVIGLSTGKRLLSSSFYYSDLTEKLSSVNDHGITYCPTATTKNVVVAKKSSNYGP 60

Query: 1660 XXXXXNRQTQSVKALKEHVD-ANFASTTESWFETSNDIEEESSELDYSVEALLLLQKSML 1484
                 NR + S+KALKEHVD A+ +S   +WF+T +D EEESS LDYSVEALLLLQKSML
Sbjct: 61   NFPSSNRNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSML 120

Query: 1483 EKQWNLSFERTDLTGSPTKKTHKKVSVTYSGVSARQRRVNSKMKILGHNKSVMQHNGSKQ 1304
            EKQWNLSFERT+ + S +KK +KK+ VT SGVSARQRRVN++ K    +K + Q +  K 
Sbjct: 121  EKQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFKF 180

Query: 1303 LRSMISPELIQYRLKGYVKGVVSDELLTHGEVVRLSKKIKTGLSLDEHKLRLEERLGCEP 1124
            LRS+ISP+L+Q RLKGYVKGVVSDE+L H EVVRLS+ I+ GLS ++HK RL+ERLGCEP
Sbjct: 181  LRSVISPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEP 240

Query: 1123 SVEQLAASLRISRPELQSIMMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGL 944
            S EQ+A SLRISR +LQ+ +++CSLAREKL MSNVRLVMSIAQ+YDNMGA+MADLVQGGL
Sbjct: 241  SDEQIADSLRISRADLQAKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQGGL 300

Query: 943  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIR 764
            IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIR
Sbjct: 301  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIR 360

Query: 763  LEEKGITPSVDRIAEYLNMSQTKVRNATEAMSKVFSLDREAFPSLNGLPGETHHSYIADN 584
            LEEKG+TPS+DRIAE LNMSQ KVRNATEA+SKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361  LEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 583  CVENNPWHGVDNWALKDEVNRLIMATLAEREREIIRLYYGLDKECLTWEDISKRVGLSRE 404
              ENNPWHGVD WALK+EVN+LI +TL ERE+EIIRLY+GLD+ECLTWEDISKR+GLSRE
Sbjct: 421  RPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQECLTWEDISKRMGLSRE 480

Query: 403  RVRQVGLVALEKLKHAARKNKMEAMLVKH 317
            RVRQVGLVALEKLKHAARK   EAMLVKH
Sbjct: 481  RVRQVGLVALEKLKHAARKRNTEAMLVKH 509


>ref|XP_012070278.1| PREDICTED: RNA polymerase sigma factor sigA [Jatropha curcas]
            gi|802585167|ref|XP_012070279.1| PREDICTED: RNA
            polymerase sigma factor sigA [Jatropha curcas]
            gi|643732469|gb|KDP39565.1| hypothetical protein
            JCGZ_02585 [Jatropha curcas]
          Length = 508

 Score =  754 bits (1947), Expect = 0.0
 Identities = 390/508 (76%), Positives = 437/508 (86%), Gaps = 1/508 (0%)
 Frame = -3

Query: 1837 MATAAVIGLSTGKRLLSSSFYYSDISEKLSYINDLGSANSQLGSTKNVVAAKKXXXXXXX 1658
            MATAAVIGL  GKRLLSS+FYYSD++EKL  +ND G  + Q  STKNV+ AKK       
Sbjct: 1    MATAAVIGLHAGKRLLSSTFYYSDLTEKLFNVNDHGLTHYQSSSTKNVIVAKKSSNYGSS 60

Query: 1657 XXXXNRQTQSVKALKEHVD-ANFASTTESWFETSNDIEEESSELDYSVEALLLLQKSMLE 1481
                NR  QS+KALKEHVD A+  ST  + FET  DIEE SS+LDYSVEALLLLQKSMLE
Sbjct: 61   FQSSNRNAQSIKALKEHVDTASSPSTAATGFETFVDIEEASSDLDYSVEALLLLQKSMLE 120

Query: 1480 KQWNLSFERTDLTGSPTKKTHKKVSVTYSGVSARQRRVNSKMKILGHNKSVMQHNGSKQL 1301
            KQWNLSFERT  + SP+ K+ K++ +T SG+SARQRR+N++ K L  +KS++Q +G KQL
Sbjct: 121  KQWNLSFERTASSDSPSTKSQKQIPITCSGLSARQRRINTRRKNLIQSKSIVQASGFKQL 180

Query: 1300 RSMISPELIQYRLKGYVKGVVSDELLTHGEVVRLSKKIKTGLSLDEHKLRLEERLGCEPS 1121
            +S +SPEL+  RLKGYVKG+VS+ELLTH EVV LS+ IK GLSL+EHK RL++RLGC+PS
Sbjct: 181  KSAVSPELLLNRLKGYVKGIVSEELLTHAEVVSLSRIIKAGLSLEEHKSRLKDRLGCDPS 240

Query: 1120 VEQLAASLRISRPELQSIMMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI 941
             EQLA SLRIS  +L+S ++ CSLAREKL MSNVRLVMSIAQRYDNMGA+MADLVQGGLI
Sbjct: 241  DEQLATSLRISLADLRSKLIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300

Query: 940  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIRL 761
            GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV+NSRTLRLPNHLHERLGLIRNAKIRL
Sbjct: 301  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKIRL 360

Query: 760  EEKGITPSVDRIAEYLNMSQTKVRNATEAMSKVFSLDREAFPSLNGLPGETHHSYIADNC 581
            EEKG+TPS+DRIAE LNMSQ KVRNATEA+SKVFSLDREAFPSLNGLPGETHHSYIADNC
Sbjct: 361  EEKGVTPSIDRIAESLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNC 420

Query: 580  VENNPWHGVDNWALKDEVNRLIMATLAEREREIIRLYYGLDKECLTWEDISKRVGLSRER 401
             ENNPWHGVD WALKDEVN+LI  TL +REREIIRLYYGLD E LTWEDISKR+GLSRER
Sbjct: 421  PENNPWHGVDEWALKDEVNKLIDLTLQQREREIIRLYYGLDNETLTWEDISKRIGLSRER 480

Query: 400  VRQVGLVALEKLKHAARKNKMEAMLVKH 317
            VRQVGLVALEKLKHAARK K+EAMLVKH
Sbjct: 481  VRQVGLVALEKLKHAARKKKLEAMLVKH 508


>ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protein [Populus trichocarpa]
            gi|222862757|gb|EEF00264.1| RNA POLYMERASE SIGMA SUBUNIT
            1 family protein [Populus trichocarpa]
          Length = 509

 Score =  751 bits (1938), Expect = 0.0
 Identities = 389/509 (76%), Positives = 438/509 (86%), Gaps = 1/509 (0%)
 Frame = -3

Query: 1840 MMATAAVIGLSTGKRLLSSSFYYSDISEKLSYINDLGSANSQLGSTKNVVAAKKXXXXXX 1661
            MMATAAVIGLS+GKRLLSSSFYYSD++EKLS +ND G       +TKNV+ AKK      
Sbjct: 1    MMATAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTKNVIVAKKSSNYGP 60

Query: 1660 XXXXXNRQTQSVKALKEHVD-ANFASTTESWFETSNDIEEESSELDYSVEALLLLQKSML 1484
                 NR + S+KALKEHVD A+ +S   +WF+T +D EEESS LDYSVEALLLLQKSML
Sbjct: 61   SFPSSNRNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSML 120

Query: 1483 EKQWNLSFERTDLTGSPTKKTHKKVSVTYSGVSARQRRVNSKMKILGHNKSVMQHNGSKQ 1304
            EKQWNLSFERT+ + S +KK +KK+ VT SGVSARQRRVN++ K    +K + Q +  K 
Sbjct: 121  EKQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFKF 180

Query: 1303 LRSMISPELIQYRLKGYVKGVVSDELLTHGEVVRLSKKIKTGLSLDEHKLRLEERLGCEP 1124
            LRS+ SP+L+Q RLKGYVKGVVSDE+L H EVVRLS+ I+ GLS ++HK RL+ERLGCEP
Sbjct: 181  LRSVSSPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEP 240

Query: 1123 SVEQLAASLRISRPELQSIMMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGL 944
            S EQ+A SLRISR +LQS +++CSLAREKL MSNVRLVMSIAQ+YDNMGA+MADLVQGGL
Sbjct: 241  SDEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQGGL 300

Query: 943  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIR 764
            IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIR
Sbjct: 301  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIR 360

Query: 763  LEEKGITPSVDRIAEYLNMSQTKVRNATEAMSKVFSLDREAFPSLNGLPGETHHSYIADN 584
            LEEKG+TPS+DRIAE LNMSQ KVRNATEA+SKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361  LEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 583  CVENNPWHGVDNWALKDEVNRLIMATLAEREREIIRLYYGLDKECLTWEDISKRVGLSRE 404
              ENNPWHGVD WALK+EVN+LI +TL ERE+EIIRLY+GLD+ECLTWEDISKR+GLSRE
Sbjct: 421  RPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQECLTWEDISKRMGLSRE 480

Query: 403  RVRQVGLVALEKLKHAARKNKMEAMLVKH 317
            RVRQVGLVALEKLKHAARK   EAMLVKH
Sbjct: 481  RVRQVGLVALEKLKHAARKRNTEAMLVKH 509


>ref|XP_012492331.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1
            [Gossypium raimondii] gi|823194413|ref|XP_012492332.1|
            PREDICTED: RNA polymerase sigma factor sigA-like isoform
            X1 [Gossypium raimondii] gi|763777231|gb|KJB44354.1|
            hypothetical protein B456_007G247500 [Gossypium
            raimondii]
          Length = 535

 Score =  749 bits (1935), Expect = 0.0
 Identities = 397/536 (74%), Positives = 441/536 (82%), Gaps = 28/536 (5%)
 Frame = -3

Query: 1840 MMATAAVIGLSTGKRLLSSSFYYSDISEKLSYINDLGSANSQLGSTKNVVAAKKXXXXXX 1661
            MMATAAVIGLSTGKRLLSSSF YS+  +KLSY  D GS+  Q  STK ++ AK+      
Sbjct: 1    MMATAAVIGLSTGKRLLSSSFSYSETVDKLSYAGDYGSSYYQTPSTKTLMVAKRSSNCSQ 60

Query: 1660 XXXXXNRQTQSVKALKEHVD-ANFASTTESWFETSNDIEEESSELDYSVEALLLLQKSML 1484
                 NR TQS+KA KEHVD A+  ST E W   +ND+E+ES +LDYSVEALLLLQKSML
Sbjct: 61   NLPSSNRHTQSIKAFKEHVDTASSISTVEPWIHGTNDLEQESYDLDYSVEALLLLQKSML 120

Query: 1483 EKQWNLSFERTDLTGSPTKKTHKKVSVTYSGVSARQRRVNSKMKILGHNKSVMQHNGSKQ 1304
            EKQW LSFERT  T SP++KTH KV VT SGVSARQRR ++K KIL  NKS++Q N +KQ
Sbjct: 121  EKQWTLSFERTMFTESPSRKTHNKVPVTCSGVSARQRRFSTKRKILSQNKSMIQPN-AKQ 179

Query: 1303 LRSMISPELIQYRLKGYVKGVVSDELLTHGEVVRLSKKIKTGLSLDEHKLRLEERLGCEP 1124
            LRS+I PEL+Q RLKGYVKGVVS++LL+H EVVRLS+KIK GLSL+EH+LRL+ERLGCEP
Sbjct: 180  LRSLIGPELLQNRLKGYVKGVVSEDLLSHAEVVRLSRKIKAGLSLEEHRLRLKERLGCEP 239

Query: 1123 SVEQLAASLRISRPELQSIMMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGL 944
            S EQLA SL++SR EL+S  +ECSLAREKL MSNVRLVMSIAQRYDNMGA+M+DL+QGGL
Sbjct: 240  SDEQLATSLKVSRAELRSRSIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLIQGGL 299

Query: 943  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIR 764
            IGLLRGIEKFDSSKG+KISTYVYWWIRQGVSRALV+NSRTLRLP +LHERLGLIRNAK R
Sbjct: 300  IGLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLGLIRNAKYR 359

Query: 763  LEEKGITPSVD---------------------------RIAEYLNMSQTKVRNATEAMSK 665
            LEEKGITP++D                           RIAE LNMSQ KVRNATEA+SK
Sbjct: 360  LEEKGITPTIDSLLYASSQVSYSLNEPSFKYLILLYFQRIAESLNMSQKKVRNATEAVSK 419

Query: 664  VFSLDREAFPSLNGLPGETHHSYIADNCVENNPWHGVDNWALKDEVNRLIMATLAERERE 485
            VFSLDR+AFPSLNGLPGETHHSYIADN VENNPWHGVD WALKDEVNRLI  TL ERERE
Sbjct: 420  VFSLDRDAFPSLNGLPGETHHSYIADNHVENNPWHGVDEWALKDEVNRLINITLGERERE 479

Query: 484  IIRLYYGLDKECLTWEDISKRVGLSRERVRQVGLVALEKLKHAARKNKMEAMLVKH 317
            IIRLY+GLDKE LTWEDISKR+GLSRERVRQVGLVALEKLKHAARK KMEAMLVKH
Sbjct: 480  IIRLYHGLDKESLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAMLVKH 535


>gb|KDO48035.1| hypothetical protein CISIN_1g010521mg [Citrus sinensis]
          Length = 443

 Score =  747 bits (1929), Expect = 0.0
 Identities = 385/435 (88%), Positives = 401/435 (92%)
 Frame = -3

Query: 1840 MMATAAVIGLSTGKRLLSSSFYYSDISEKLSYINDLGSANSQLGSTKNVVAAKKXXXXXX 1661
            MMATAAVIGLS GKRLLSSSFYYSDISEK SYINDLGSANSQ+GSTKNVVAAKK      
Sbjct: 1    MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP 60

Query: 1660 XXXXXNRQTQSVKALKEHVDANFASTTESWFETSNDIEEESSELDYSVEALLLLQKSMLE 1481
                 NRQTQ +KALKEHVD NFAST E W E  N IEEESSELDYSVEALLLLQKSMLE
Sbjct: 61   SFPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLE 120

Query: 1480 KQWNLSFERTDLTGSPTKKTHKKVSVTYSGVSARQRRVNSKMKILGHNKSVMQHNGSKQL 1301
            KQWNLSFERT LT SP+KKTHKKV VT SGVSARQRR+NSK KIL  NKS++Q NGSKQL
Sbjct: 121  KQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQL 180

Query: 1300 RSMISPELIQYRLKGYVKGVVSDELLTHGEVVRLSKKIKTGLSLDEHKLRLEERLGCEPS 1121
            RSMISPELIQ RLKGYVKGVVS+ELLTH EVVRLSKKIKTGLSLD+HKLRL+ERLGCEPS
Sbjct: 181  RSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPS 240

Query: 1120 VEQLAASLRISRPELQSIMMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI 941
            +EQLAASLRISRPELQSI+MECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI
Sbjct: 241  MEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI 300

Query: 940  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIRL 761
            GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV+NSRTLRLPNHLHERLGLIRNAK+RL
Sbjct: 301  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL 360

Query: 760  EEKGITPSVDRIAEYLNMSQTKVRNATEAMSKVFSLDREAFPSLNGLPGETHHSYIADNC 581
            EEKG+TPSVDRIAEYLNMSQ KVRNATEA+ KVFSLDREAFPSLNGLPGETHHSYIADN 
Sbjct: 361  EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNR 420

Query: 580  VENNPWHGVDNWALK 536
            VENNPWHGVD+WALK
Sbjct: 421  VENNPWHGVDDWALK 435


>gb|AKC88633.1| sigma factor [Melianthus villosus]
          Length = 506

 Score =  745 bits (1924), Expect = 0.0
 Identities = 384/508 (75%), Positives = 436/508 (85%), Gaps = 1/508 (0%)
 Frame = -3

Query: 1837 MATAAVIGLSTGKRLLSSSFYYSDISEKLSYINDLGSANSQLGSTKNVVAAKKXXXXXXX 1658
            MATAAVIGLS GKRLLSSS YYSD +EKLSY ND G  N+    TK VV AKK       
Sbjct: 1    MATAAVIGLSAGKRLLSSSLYYSDYAEKLSYANDHGHYNAT--PTKTVVIAKKSSNCSPR 58

Query: 1657 XXXXNRQTQSVKALKEHVD-ANFASTTESWFETSNDIEEESSELDYSVEALLLLQKSMLE 1481
                NR+TQS+KALKEHVD  +  ST ESWF+ SND++E++ +++YSVEALLLLQKSMLE
Sbjct: 59   FPSSNRKTQSIKALKEHVDDISGPSTAESWFQRSNDVDEQNFDIEYSVEALLLLQKSMLE 118

Query: 1480 KQWNLSFERTDLTGSPTKKTHKKVSVTYSGVSARQRRVNSKMKILGHNKSVMQHNGSKQL 1301
            KQWNLSF++T LT    +KT K++ VT SGVSARQRR+++K KIL  N S+MQ +   +L
Sbjct: 119  KQWNLSFDKTMLTDLVKEKTCKRIPVTCSGVSARQRRMSNKRKILSENSSMMQTSRCNRL 178

Query: 1300 RSMISPELIQYRLKGYVKGVVSDELLTHGEVVRLSKKIKTGLSLDEHKLRLEERLGCEPS 1121
            R++I PEL+Q R KGYVKGVVS+ELL+H EVV LSKKIK GLSL+EHKLRL++RLGCEPS
Sbjct: 179  RTIIGPELMQNRFKGYVKGVVSEELLSHAEVVHLSKKIKCGLSLEEHKLRLKKRLGCEPS 238

Query: 1120 VEQLAASLRISRPELQSIMMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI 941
             EQLA SLRISR EL+S  +E  LAREKL MSNVRLVMSIAQRYDNMGA+M+DLVQGGLI
Sbjct: 239  DEQLATSLRISRAELRSKWIESGLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLVQGGLI 298

Query: 940  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIRL 761
            GLLRGIEKFDS+KGFKISTYVYWWIRQGVSRAL++NSRTLRLP HLHERLGLIRNAKIRL
Sbjct: 299  GLLRGIEKFDSAKGFKISTYVYWWIRQGVSRALIENSRTLRLPTHLHERLGLIRNAKIRL 358

Query: 760  EEKGITPSVDRIAEYLNMSQTKVRNATEAMSKVFSLDREAFPSLNGLPGETHHSYIADNC 581
            EEKGITPS++R+AE LNMS+ K+RNATEA+SKVFSLDREAFPSLNGLPGETHHSYIADNC
Sbjct: 359  EEKGITPSIERLAECLNMSKKKIRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNC 418

Query: 580  VENNPWHGVDNWALKDEVNRLIMATLAEREREIIRLYYGLDKECLTWEDISKRVGLSRER 401
            ++NNPWHGVD WALKDEV +LI  TL EREREIIRLY+GLD ECLTWEDISKR+GLSRER
Sbjct: 419  LDNNPWHGVDEWALKDEVKKLIEMTLGEREREIIRLYHGLDNECLTWEDISKRIGLSRER 478

Query: 400  VRQVGLVALEKLKHAARKNKMEAMLVKH 317
            VRQVGLVA+EKLKHAAR+  MEAMLVKH
Sbjct: 479  VRQVGLVAMEKLKHAARRKHMEAMLVKH 506


>ref|XP_008234513.1| PREDICTED: RNA polymerase sigma factor sigA [Prunus mume]
          Length = 512

 Score =  737 bits (1903), Expect = 0.0
 Identities = 386/512 (75%), Positives = 436/512 (85%), Gaps = 4/512 (0%)
 Frame = -3

Query: 1840 MMATAAVIGLSTGKRLLSSSFYYSDISEKLSYINDL-GSANSQLGSTKNVVAAKKXXXXX 1664
            MMATAAVIGLSTGKRLL+SSFYYSDI+EKL ++ND  G  +    STKNVV A+K     
Sbjct: 1    MMATAAVIGLSTGKRLLNSSFYYSDITEKLFHLNDHHGFLHCHFSSTKNVVTARKPSNCS 60

Query: 1663 XXXXXXNRQTQSVKALKEHVDANFA--STTESWFETSNDIEEESSELDYSVEALLLLQKS 1490
                  NR  QS++ALKEHV    A  S T+ WF+  ND+EEESS+L+YSVEALLLLQKS
Sbjct: 61   SRFPSSNRPQQSIRALKEHVHTASAPSSATQQWFQELNDLEEESSDLEYSVEALLLLQKS 120

Query: 1489 MLEKQWNLSFERTDLTGSPTKKTHKKVSVTYSGVSARQRRVNS-KMKILGHNKSVMQHNG 1313
            MLEKQWNLSFE+  L  S +K T KK+ VT SGVSARQRR+ S K K L  +  VM  + 
Sbjct: 121  MLEKQWNLSFEKKVLRDSTSKTTDKKIPVTCSGVSARQRRMTSTKRKTLNKSTCVMHPST 180

Query: 1312 SKQLRSMISPELIQYRLKGYVKGVVSDELLTHGEVVRLSKKIKTGLSLDEHKLRLEERLG 1133
            +K LR+++SPEL+Q R+KGYVKGV+S++LLTH EVVRLSKKIK GLS++EHK RL+ERLG
Sbjct: 181  NKPLRAIVSPELLQNRVKGYVKGVLSEDLLTHTEVVRLSKKIKVGLSVEEHKSRLKERLG 240

Query: 1132 CEPSVEQLAASLRISRPELQSIMMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 953
            CEPS EQLA SLRISR +LQS ++EC LAREKL MSNVRLVMSIAQRYDNMGA+MADL+Q
Sbjct: 241  CEPSDEQLATSLRISRAQLQSKLIECKLAREKLAMSNVRLVMSIAQRYDNMGAEMADLIQ 300

Query: 952  GGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNA 773
            GGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV+NSRTLRLP HLHERLGLIRNA
Sbjct: 301  GGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNA 360

Query: 772  KIRLEEKGITPSVDRIAEYLNMSQTKVRNATEAMSKVFSLDREAFPSLNGLPGETHHSYI 593
            KIRLEEKGITPS+DRIAE LNMS+ KVRNATEA+SKVFSLDR+AFPSLNGLPGETHHSYI
Sbjct: 361  KIRLEEKGITPSIDRIAESLNMSKKKVRNATEAISKVFSLDRDAFPSLNGLPGETHHSYI 420

Query: 592  ADNCVENNPWHGVDNWALKDEVNRLIMATLAEREREIIRLYYGLDKECLTWEDISKRVGL 413
            ADN +EN PWHGVD WALK+EV++LI   L EREREII+LYYGL+ ECLTWEDISKR+GL
Sbjct: 421  ADNRLENIPWHGVDAWALKEEVSKLINMMLGEREREIIQLYYGLENECLTWEDISKRIGL 480

Query: 412  SRERVRQVGLVALEKLKHAARKNKMEAMLVKH 317
            SRERVRQVGLVALEKLKHAARK +MEAML+KH
Sbjct: 481  SRERVRQVGLVALEKLKHAARKREMEAMLLKH 512


>ref|XP_007219023.1| hypothetical protein PRUPE_ppa004393mg [Prunus persica]
            gi|462415485|gb|EMJ20222.1| hypothetical protein
            PRUPE_ppa004393mg [Prunus persica]
          Length = 512

 Score =  733 bits (1892), Expect = 0.0
 Identities = 383/512 (74%), Positives = 434/512 (84%), Gaps = 4/512 (0%)
 Frame = -3

Query: 1840 MMATAAVIGLSTGKRLLSSSFYYSDISEKLSYINDL-GSANSQLGSTKNVVAAKKXXXXX 1664
            MMATAAVIGLSTGKRLL+SSFYYSDI+EKL ++ND  G  +    STKNVV A+K     
Sbjct: 1    MMATAAVIGLSTGKRLLNSSFYYSDITEKLFHLNDHHGFLHCHFSSTKNVVTARKPSNCS 60

Query: 1663 XXXXXXNRQTQSVKALKEHVDANFA--STTESWFETSNDIEEESSELDYSVEALLLLQKS 1490
                  NR  QS++ALKEHV    A  S T+ WF+  ND+EEESS+L+YSVEALLLLQKS
Sbjct: 61   SRFPSSNRPQQSIRALKEHVQTASAPSSATQQWFQELNDLEEESSDLEYSVEALLLLQKS 120

Query: 1489 MLEKQWNLSFERTDLTGSPTKKTHKKVSVTYSGVSARQRRVNS-KMKILGHNKSVMQHNG 1313
            MLEKQWNLSFE+  L  S +K T KK+ VT SGVSARQRR+ S K K    +  VM  + 
Sbjct: 121  MLEKQWNLSFEKKVLRDSTSKTTDKKIPVTCSGVSARQRRMTSTKRKTFNKSTCVMHPST 180

Query: 1312 SKQLRSMISPELIQYRLKGYVKGVVSDELLTHGEVVRLSKKIKTGLSLDEHKLRLEERLG 1133
            +K LR+++SPEL+Q  +KGYVKGV+S++LLTH EVVRLSKKIK GLS++EHK RL+ERLG
Sbjct: 181  NKPLRAIVSPELLQNHVKGYVKGVLSEDLLTHTEVVRLSKKIKVGLSVEEHKSRLKERLG 240

Query: 1132 CEPSVEQLAASLRISRPELQSIMMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 953
            CEPS EQLA SLRISR +LQS ++EC LAREKL MSNVRLVMSIAQRYDNMGA+MADL+Q
Sbjct: 241  CEPSDEQLATSLRISRAQLQSKLIECKLAREKLAMSNVRLVMSIAQRYDNMGAEMADLIQ 300

Query: 952  GGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNA 773
            GGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV+NSRTLRLP HLHERLGLIRNA
Sbjct: 301  GGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNA 360

Query: 772  KIRLEEKGITPSVDRIAEYLNMSQTKVRNATEAMSKVFSLDREAFPSLNGLPGETHHSYI 593
            KIRLEEKGITPS+DRIAE LNMS+ KVRNATEA+SKVFSLDR+AFPSLNGLPGETHHSYI
Sbjct: 361  KIRLEEKGITPSIDRIAESLNMSKKKVRNATEAISKVFSLDRDAFPSLNGLPGETHHSYI 420

Query: 592  ADNCVENNPWHGVDNWALKDEVNRLIMATLAEREREIIRLYYGLDKECLTWEDISKRVGL 413
            ADN +EN PWHGVD WALK+EV++LI   L ERE+EII+LYYGL+ ECLTWEDISKR+GL
Sbjct: 421  ADNRLENIPWHGVDAWALKEEVSKLINMMLGEREKEIIQLYYGLENECLTWEDISKRIGL 480

Query: 412  SRERVRQVGLVALEKLKHAARKNKMEAMLVKH 317
            SRERVRQVGLVALEKLKHAARK +MEAML+KH
Sbjct: 481  SRERVRQVGLVALEKLKHAARKREMEAMLLKH 512


>ref|XP_010275189.1| PREDICTED: RNA polymerase sigma factor sigA-like [Nelumbo nucifera]
            gi|720061510|ref|XP_010275190.1| PREDICTED: RNA
            polymerase sigma factor sigA-like [Nelumbo nucifera]
            gi|720061513|ref|XP_010275191.1| PREDICTED: RNA
            polymerase sigma factor sigA-like [Nelumbo nucifera]
          Length = 516

 Score =  728 bits (1880), Expect = 0.0
 Identities = 370/512 (72%), Positives = 433/512 (84%)
 Frame = -3

Query: 1852 IRSHMMATAAVIGLSTGKRLLSSSFYYSDISEKLSYINDLGSANSQLGSTKNVVAAKKXX 1673
            +RS  MATAAVIGL+ GKRLLSS+FYYSD++++L+ + D G A  Q   +K+VV AKK  
Sbjct: 6    LRSSSMATAAVIGLNAGKRLLSSTFYYSDVTDRLASVYDHGLAQYQTAPSKSVVIAKKSS 65

Query: 1672 XXXXXXXXXNRQTQSVKALKEHVDANFASTTESWFETSNDIEEESSELDYSVEALLLLQK 1493
                      R  QS+KALKEH++    ST + W +TS+ +EE +S+LDYS+EALLLLQK
Sbjct: 66   NFDHDFASN-RHNQSIKALKEHLNTFSTSTEDMWLQTSDHLEEGNSDLDYSLEALLLLQK 124

Query: 1492 SMLEKQWNLSFERTDLTGSPTKKTHKKVSVTYSGVSARQRRVNSKMKILGHNKSVMQHNG 1313
            S+LEKQWNLSFE++   G+P ++T KK+ VT SGVSARQRR N++ K L  + S+MQ   
Sbjct: 125  SLLEKQWNLSFEKSMRKGAPKEETRKKIQVTRSGVSARQRRTNTRKKYLNTDSSMMQTTR 184

Query: 1312 SKQLRSMISPELIQYRLKGYVKGVVSDELLTHGEVVRLSKKIKTGLSLDEHKLRLEERLG 1133
             + L SM+S EL+Q RLKGYVKGV+S+ELLTH EVV+LSKKIK G+SL+EHK+RL+ERLG
Sbjct: 185  RRHLGSMVSEELLQSRLKGYVKGVISEELLTHSEVVQLSKKIKVGISLEEHKMRLKERLG 244

Query: 1132 CEPSVEQLAASLRISRPELQSIMMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 953
            CEPS EQLA SLRISR ELQ  M+ECSLAREK+ MSNVRLVMSIA +YDNMGA+MADLVQ
Sbjct: 245  CEPSDEQLATSLRISRAELQMKMIECSLAREKIAMSNVRLVMSIAHKYDNMGAEMADLVQ 304

Query: 952  GGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNA 773
            GGLIGLLRGIEKFDSSKG KISTYVYWWIRQGVSRALV+NSRTLRLP+H+HERL LIRNA
Sbjct: 305  GGLIGLLRGIEKFDSSKGCKISTYVYWWIRQGVSRALVENSRTLRLPSHMHERLSLIRNA 364

Query: 772  KIRLEEKGITPSVDRIAEYLNMSQTKVRNATEAMSKVFSLDREAFPSLNGLPGETHHSYI 593
            KIRLEEKGITPS+DRIAE LN+SQ KVRNATEA++KV SLDREAFPSLNGLPGET HSYI
Sbjct: 365  KIRLEEKGITPSIDRIAECLNISQKKVRNATEAVNKVISLDREAFPSLNGLPGETLHSYI 424

Query: 592  ADNCVENNPWHGVDNWALKDEVNRLIMATLAEREREIIRLYYGLDKECLTWEDISKRVGL 413
            ADN +ENNPWHGVD W+LKDEVN L+  TL ERER+IIRLYYGLD+ECLTWEDIS+R+GL
Sbjct: 425  ADNRIENNPWHGVDEWSLKDEVNNLLNTTLRERERDIIRLYYGLDEECLTWEDISRRIGL 484

Query: 412  SRERVRQVGLVALEKLKHAARKNKMEAMLVKH 317
            SRERVRQVGLVALEKLKHAARK +++AMLVKH
Sbjct: 485  SRERVRQVGLVALEKLKHAARKKRLDAMLVKH 516


>gb|AKC88628.1| sigma factor [Francoa sonchifolia]
          Length = 508

 Score =  724 bits (1870), Expect = 0.0
 Identities = 372/508 (73%), Positives = 431/508 (84%), Gaps = 1/508 (0%)
 Frame = -3

Query: 1837 MATAAVIGLSTGKRLLSSSFYYSDISEKLSYINDLGSANSQLGSTKNVVAAKKXXXXXXX 1658
            M T+AVIGLSTGKRLLSSS YYSD++E  S +ND    + Q+ S K+VV AKK       
Sbjct: 1    MGTSAVIGLSTGKRLLSSSRYYSDLTEMFSCVNDHALVHYQISSPKSVVVAKKSSNYSPT 60

Query: 1657 XXXXNRQTQSVKALKEHVD-ANFASTTESWFETSNDIEEESSELDYSVEALLLLQKSMLE 1481
                NRQTQ +KALKEH++ A+  S  E WF+ SN++E+++S+L+YSV+A LLLQKSMLE
Sbjct: 61   FPSSNRQTQPIKALKEHLETASAPSNAEPWFQISNELEKQNSDLEYSVDAFLLLQKSMLE 120

Query: 1480 KQWNLSFERTDLTGSPTKKTHKKVSVTYSGVSARQRRVNSKMKILGHNKSVMQHNGSKQL 1301
            KQ +LSFE+  LT S  +K  KK+SVT S +SARQRR++ + KIL  N  ++Q + SKQL
Sbjct: 121  KQLSLSFEQEVLTDSVKEKHSKKMSVTCSELSARQRRISGRRKILSENNGMLQASTSKQL 180

Query: 1300 RSMISPELIQYRLKGYVKGVVSDELLTHGEVVRLSKKIKTGLSLDEHKLRLEERLGCEPS 1121
            R++ISP L+Q   KGYVKGV+S+E+L H EVVRLSKKIK+GLS++EHKLRL+ +LGCEPS
Sbjct: 181  RAIISPVLLQNHFKGYVKGVISNEVLAHAEVVRLSKKIKSGLSMEEHKLRLKGKLGCEPS 240

Query: 1120 VEQLAASLRISRPELQSIMMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI 941
             EQLA SLRIS  EL+S  +E  LAREKL MSNVRLVMSIAQRY+NMGA+M DLVQGGLI
Sbjct: 241  DEQLATSLRISLAELRSKWIESGLAREKLAMSNVRLVMSIAQRYNNMGAEMPDLVQGGLI 300

Query: 940  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIRL 761
            GLLRGIEKFDSSKGFKISTYVYWWIRQG+SRA+V+NSRTLRLP HLHERLGLIRNAKIRL
Sbjct: 301  GLLRGIEKFDSSKGFKISTYVYWWIRQGISRAVVENSRTLRLPTHLHERLGLIRNAKIRL 360

Query: 760  EEKGITPSVDRIAEYLNMSQTKVRNATEAMSKVFSLDREAFPSLNGLPGETHHSYIADNC 581
            EEKGITPSV+R+AEYLN+S+ KVRNATEA+SKVFSLDR+AFPSLNGLPGETHHSYIADNC
Sbjct: 361  EEKGITPSVERLAEYLNISKKKVRNATEAISKVFSLDRDAFPSLNGLPGETHHSYIADNC 420

Query: 580  VENNPWHGVDNWALKDEVNRLIMATLAEREREIIRLYYGLDKECLTWEDISKRVGLSRER 401
            ++NNPWHGVD WALKDEVN+LI  TL EREREIIRLYYGLD ECLTWEDISKR+GLSRER
Sbjct: 421  LDNNPWHGVDEWALKDEVNKLIKMTLGEREREIIRLYYGLDGECLTWEDISKRIGLSRER 480

Query: 400  VRQVGLVALEKLKHAARKNKMEAMLVKH 317
            VRQVGLVALEKLKHAARK  MEAMLVKH
Sbjct: 481  VRQVGLVALEKLKHAARKKNMEAMLVKH 508


>ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor sigA-like [Glycine max]
            gi|734432890|gb|KHN46496.1| RNA polymerase sigma factor
            rpoD [Glycine soja] gi|947075123|gb|KRH23963.1|
            hypothetical protein GLYMA_12G013300 [Glycine max]
          Length = 503

 Score =  721 bits (1861), Expect = 0.0
 Identities = 378/510 (74%), Positives = 436/510 (85%), Gaps = 3/510 (0%)
 Frame = -3

Query: 1837 MATAAVIGLSTGKRLLSSSFYYSDISEKLSYINDLGSANSQLGSTKNVVAAKKXXXXXXX 1658
            MATAAVIGLS GKRLLSSS++YSDI EKLSY +D GS + Q+  TK+++ AKK       
Sbjct: 1    MATAAVIGLSGGKRLLSSSYHYSDIIEKLSYGSDFGSTHYQIVPTKSLIVAKKSSNYTPT 60

Query: 1657 XXXXNRQTQSVKALKEHVDANFASTTESWFET--SNDIEEESSELDYSVEALLLLQKSML 1484
                N+Q QS+KALKEHVD +  +  + WF++  SND+E ESSE+ YSVEALLLLQKSML
Sbjct: 61   FPASNQQNQSIKALKEHVD-DAPTIADPWFQSYNSNDLEVESSEMGYSVEALLLLQKSML 119

Query: 1483 EKQWNLSFERTDLTGSPTK-KTHKKVSVTYSGVSARQRRVNSKMKILGHNKSVMQHNGSK 1307
            EKQWNLSFER  LT + +K K  +KV+VT SGVSARQRR+N+K       K+ ++  G+ 
Sbjct: 120  EKQWNLSFEREVLTENSSKGKKCRKVAVTCSGVSARQRRMNTK------RKTAIKTCGAM 173

Query: 1306 QLRSMISPELIQYRLKGYVKGVVSDELLTHGEVVRLSKKIKTGLSLDEHKLRLEERLGCE 1127
            QL+S ISPEL+Q+RLKGYVKG+VS+ELL+H EVV LS+KIK GLSL+EHK RL+E+LGCE
Sbjct: 174  QLKSKISPELLQHRLKGYVKGLVSEELLSHAEVVNLSEKIKVGLSLEEHKSRLKEKLGCE 233

Query: 1126 PSVEQLAASLRISRPELQSIMMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGG 947
            PS +Q+A SL+ISR EL++ M+ECSLAREKL MSNVRLVMSIAQ+YDN+GA+M DLVQGG
Sbjct: 234  PSDDQMATSLKISRTELRARMIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMGDLVQGG 293

Query: 946  LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKI 767
            LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV+NSRTLRLP HLHERL LIRNAK 
Sbjct: 294  LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSLIRNAKF 353

Query: 766  RLEEKGITPSVDRIAEYLNMSQTKVRNATEAMSKVFSLDREAFPSLNGLPGETHHSYIAD 587
            RLEE+GITP++DRIA+YLNMSQ KVRNATEA+SK+ SLDREAFPSLNGL GETHHSYIAD
Sbjct: 354  RLEERGITPTIDRIAKYLNMSQKKVRNATEAISKIISLDREAFPSLNGLQGETHHSYIAD 413

Query: 586  NCVENNPWHGVDNWALKDEVNRLIMATLAEREREIIRLYYGLDKECLTWEDISKRVGLSR 407
            N VEN PW+GVD WALKDEVNRLI  TL EREREIIRLYYGL+KECLTWEDISKR+GLSR
Sbjct: 414  NRVENIPWNGVDEWALKDEVNRLINVTLVEREREIIRLYYGLEKECLTWEDISKRIGLSR 473

Query: 406  ERVRQVGLVALEKLKHAARKNKMEAMLVKH 317
            ERVRQVGLVALEKLKHAARK +MEAML+KH
Sbjct: 474  ERVRQVGLVALEKLKHAARKRQMEAMLLKH 503