BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zanthoxylum22_contig00007512
         (2943 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006485796.1| PREDICTED: chloroplastic group IIA intron sp...  1241   0.0  
ref|XP_006440978.1| hypothetical protein CICLE_v10018859mg [Citr...  1238   0.0  
gb|KDO57458.1| hypothetical protein CISIN_1g0362941mg, partial [...  1213   0.0  
ref|XP_006440981.1| hypothetical protein CICLE_v10018859mg [Citr...  1207   0.0  
ref|XP_012093011.1| PREDICTED: chloroplastic group IIA intron sp...  1037   0.0  
ref|XP_007036533.1| CRS1 / YhbY domain-containing protein [Theob...  1028   0.0  
ref|XP_010094746.1| Chloroplastic group IIA intron splicing faci...  1019   0.0  
ref|XP_011045859.1| PREDICTED: chloroplastic group IIA intron sp...  1008   0.0  
ref|XP_008240263.1| PREDICTED: chloroplastic group IIA intron sp...  1001   0.0  
ref|XP_007211308.1| hypothetical protein PRUPE_ppa001468mg [Prun...  1001   0.0  
ref|XP_011045860.1| PREDICTED: chloroplastic group IIA intron sp...   999   0.0  
ref|XP_002317913.2| hypothetical protein POPTR_0012s05260g [Popu...   998   0.0  
ref|XP_012440292.1| PREDICTED: chloroplastic group IIA intron sp...   993   0.0  
ref|XP_012440291.1| PREDICTED: chloroplastic group IIA intron sp...   993   0.0  
ref|XP_012440290.1| PREDICTED: chloroplastic group IIA intron sp...   989   0.0  
ref|XP_009347186.1| PREDICTED: chloroplastic group IIA intron sp...   989   0.0  
gb|KHG01961.1| Chloroplastic group IIA intron splicing facilitat...   989   0.0  
ref|XP_004300521.1| PREDICTED: chloroplastic group IIA intron sp...   987   0.0  
ref|XP_008393315.1| PREDICTED: chloroplastic group IIA intron sp...   986   0.0  
ref|XP_008374754.1| PREDICTED: chloroplastic group IIA intron sp...   985   0.0  

>ref|XP_006485796.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Citrus sinensis]
          Length = 837

 Score = 1241 bits (3211), Expect = 0.0
 Identities = 653/813 (80%), Positives = 709/813 (87%), Gaps = 13/813 (1%)
 Frame = -2

Query: 2930 MAFATSKLTELPFRNSLTVTLASHAPPH-NLLLFSSFPRKSTSFQIIKPLSSLRTNQNPK 2754
            MA  TSKLTELPFRNSLT+T  SH+ P  N LLFSS  RK+ SFQ++KP SSLRTNQNP+
Sbjct: 1    MALTTSKLTELPFRNSLTLT--SHSTPSLNHLLFSSSSRKTPSFQLLKPFSSLRTNQNPR 58

Query: 2753 TN--HRQFPKPRSPSSSAPWLNKWSRPKPSPPVADNVTKPDGRNQFDREQTT-DSEPLYT 2583
            T+  +++FPKPR PS+SAPWLN WSRPKP  P  +NV K DGRNQ D +QT  DS P Y+
Sbjct: 59   TDSQNQKFPKPRFPSTSAPWLNNWSRPKP--PSTENVNKSDGRNQIDEKQTAPDSYPRYS 116

Query: 2582 DNDDKGRNAIERIVLRLRNLGLGTXXXXXXXXXD--VHGSVTGEERLEDLLXXXXX-PNT 2412
            D+D+KGRNAIERIVLRLRNLGLG+         +  ++G+ TGEERLEDLL      PNT
Sbjct: 117  DSDNKGRNAIERIVLRLRNLGLGSDDEEEGEEEEDDINGAATGEERLEDLLRREWVRPNT 176

Query: 2411 ILKEEGEEDEDSLLPWXXXXXXXXXXXE-KAAGEMRKKRTVKAPTLADLTIEDEELRRLR 2235
            +L+E   E++DSLLPW             K AGE R++R +KAPTLA+LTIEDEELRRLR
Sbjct: 177  VLREVEGEEDDSLLPWEREEEENLRAGGEKPAGETRRRR-MKAPTLAELTIEDEELRRLR 235

Query: 2234 RNGMYLRERINVPKAGLTQAVMQKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGG 2055
            RNGMYLRERINVPKAGLTQ VM+KIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGG
Sbjct: 236  RNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGG 295

Query: 2054 LVIWRAGSVMVVYRGSNYTGPSSKPQ----NPDREGDALFVPDVTSSDGSTVRSVDGETS 1887
            LVIWRAGSVMVVY+GSNY GPSSKPQ    + D +GD LFVP V+S+DGST RSVD    
Sbjct: 296  LVIWRAGSVMVVYQGSNYAGPSSKPQPLDGDGDGDGDTLFVPHVSSTDGSTARSVD---- 351

Query: 1886 TLAKSELAVRNPDHSNTMTEEEAECNNLLDSLGPRFQEWWGTGILPVDADLLPEKVDGYM 1707
               KSE+ VR  DHS  MTEEEAECN+LLDSLGPRFQEWWGTGILPVDADLLP KVDGY 
Sbjct: 352  --EKSEVPVRILDHSKPMTEEEAECNSLLDSLGPRFQEWWGTGILPVDADLLPPKVDGYK 409

Query: 1706 TPFRLLPTGMRSRLTNAEMTDLRKLARSLPCHFALGRNRNHQGLAVAILKLWDKSLVAKI 1527
            TPFRLLPTGMRSRLTNAEMTDLR+LARSLPCHFALGRNRNHQGLAVAILKLW+KSLVAKI
Sbjct: 410  TPFRLLPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKI 469

Query: 1526 AVKRGIQNTNNKIMAEELKNLTGGTLLLRNKYYIVIYRGKDFLPPTVAAALAEREECAKQ 1347
            AVKRGIQNTNNK+MAEELK+LTGGTLL RNK+YIV+YRGKDFLPP VA+ALAERE+CAKQ
Sbjct: 470  AVKRGIQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRGKDFLPPNVASALAEREQCAKQ 529

Query: 1346 IQDVEEKVRSKTLEAIPSGETEVQAPAGTLAEFYEAQSRWGREVSAEEREKMVEEASKAK 1167
            IQDVEEKVRSKTLEA PSGETE QAPAGTLAEFYEAQ RWGREVSAEEREKMVEEASKAK
Sbjct: 530  IQDVEEKVRSKTLEATPSGETEGQAPAGTLAEFYEAQKRWGREVSAEEREKMVEEASKAK 589

Query: 1166 HARLVKRVEHKLAVAQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRM 987
            HARLVKR+EHKLAV+QAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRM
Sbjct: 590  HARLVKRIEHKLAVSQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRM 649

Query: 986  KAFLPVGIRGVFDGVIENMHLHWKYRELVKLITKQKTLAFVEDTSRLLEYESGGILVAIE 807
            KAFLP+GIRGVFDGV+ENMHLHWKYRELVKLITKQKTLA+VEDT+RLLEYESGGIL+AIE
Sbjct: 650  KAFLPLGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTARLLEYESGGILIAIE 709

Query: 806  RVPKGFTLIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHITDLENTIEQM 627
            RVPKGF LIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHI+DLENTIEQM
Sbjct: 710  RVPKGFALIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHISDLENTIEQM 769

Query: 626  KKEIGVSQYAEDGNIKSSED-KQFDNVSDFPQN 531
            KKEIGV +  EDGNI+ S D KQFD+VS  PQN
Sbjct: 770  KKEIGVFKDEEDGNIRCSGDLKQFDHVSVLPQN 802


>ref|XP_006440978.1| hypothetical protein CICLE_v10018859mg [Citrus clementina]
            gi|567896982|ref|XP_006440979.1| hypothetical protein
            CICLE_v10018859mg [Citrus clementina]
            gi|567896984|ref|XP_006440980.1| hypothetical protein
            CICLE_v10018859mg [Citrus clementina]
            gi|557543240|gb|ESR54218.1| hypothetical protein
            CICLE_v10018859mg [Citrus clementina]
            gi|557543241|gb|ESR54219.1| hypothetical protein
            CICLE_v10018859mg [Citrus clementina]
            gi|557543242|gb|ESR54220.1| hypothetical protein
            CICLE_v10018859mg [Citrus clementina]
          Length = 833

 Score = 1238 bits (3203), Expect = 0.0
 Identities = 651/809 (80%), Positives = 705/809 (87%), Gaps = 9/809 (1%)
 Frame = -2

Query: 2930 MAFATSKLTELPFRNSLTVTLASHAPPH-NLLLFSSFPRKSTSFQIIKPLSSLRTNQNPK 2754
            MA  TSKLTELPFRNSLT+T  SH+ P  N L FSS  RK+ SFQ++KP SSLRTNQNP+
Sbjct: 1    MALTTSKLTELPFRNSLTLT--SHSTPSLNHLPFSSSSRKTPSFQLLKPFSSLRTNQNPR 58

Query: 2753 TN--HRQFPKPRSPSSSAPWLNKWSRPKPSPPVADNVTKPDGRNQFDREQTT-DSEPLYT 2583
            T+  ++QFPKPRSPS+SAPWLN WSRPKP  P  +N  K  GRNQ D +QT+ DS P Y+
Sbjct: 59   TDSQNQQFPKPRSPSTSAPWLNNWSRPKP--PSTENANKLGGRNQIDEKQTSPDSYPRYS 116

Query: 2582 DNDDKGRNAIERIVLRLRNLGLGTXXXXXXXXXD--VHGSVTGEERLEDLLXXXXX-PNT 2412
            D+D+KGRNAIERIVLRLRNLGLG+         +  ++ + TGEERLEDLL      PNT
Sbjct: 117  DSDNKGRNAIERIVLRLRNLGLGSDDEEEGEEEEDDINDAATGEERLEDLLRREWVRPNT 176

Query: 2411 ILKEEGEEDEDSLLPWXXXXXXXXXXXE-KAAGEMRKKRTVKAPTLADLTIEDEELRRLR 2235
            +L+E   E++DSLLPW             K AGE R++R +KAPTLA+LTIEDEELRRLR
Sbjct: 177  VLREVEGEEDDSLLPWEREEEENLRAGGEKPAGETRRRR-MKAPTLAELTIEDEELRRLR 235

Query: 2234 RNGMYLRERINVPKAGLTQAVMQKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGG 2055
            RNGMYLRERINVPKAGLTQ VM+KIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGG
Sbjct: 236  RNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGG 295

Query: 2054 LVIWRAGSVMVVYRGSNYTGPSSKPQNPDREGDALFVPDVTSSDGSTVRSVDGETSTLAK 1875
            LVIWRAGSVMVVYRGSNY GPSSKPQ  D +GD LFVP V+S+DGST RSVD       K
Sbjct: 296  LVIWRAGSVMVVYRGSNYAGPSSKPQPIDGDGDTLFVPHVSSTDGSTARSVD------EK 349

Query: 1874 SELAVRNPDHSNTMTEEEAECNNLLDSLGPRFQEWWGTGILPVDADLLPEKVDGYMTPFR 1695
            SE+ VR  DHS  MTEEEAECN+LLDSLGPRFQEWWGTGILPVDADLLP KVDGY TPFR
Sbjct: 350  SEVPVRILDHSKPMTEEEAECNSLLDSLGPRFQEWWGTGILPVDADLLPPKVDGYKTPFR 409

Query: 1694 LLPTGMRSRLTNAEMTDLRKLARSLPCHFALGRNRNHQGLAVAILKLWDKSLVAKIAVKR 1515
            LLPTGMRSRLTNAEMTDLR+LARSLPCHFALGRNRNHQGLAVAILKLW+KSLVAKIAVKR
Sbjct: 410  LLPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKR 469

Query: 1514 GIQNTNNKIMAEELKNLTGGTLLLRNKYYIVIYRGKDFLPPTVAAALAEREECAKQIQDV 1335
            GIQNTNNK+MAEELK+LTGGTLL RNK+YIV+YRGKDFLPP VA+ALAERE+CAKQIQDV
Sbjct: 470  GIQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRGKDFLPPNVASALAEREQCAKQIQDV 529

Query: 1334 EEKVRSKTLEAIPSGETEVQAPAGTLAEFYEAQSRWGREVSAEEREKMVEEASKAKHARL 1155
            EEKVRSKTLEA PSGETE QAPAGTLAEFYEAQ RWGREVSAEEREKMVEEASKAKH RL
Sbjct: 530  EEKVRSKTLEATPSGETEGQAPAGTLAEFYEAQKRWGREVSAEEREKMVEEASKAKHGRL 589

Query: 1154 VKRVEHKLAVAQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMKAFL 975
            VKR+EHKLAV+QAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMKAFL
Sbjct: 590  VKRIEHKLAVSQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMKAFL 649

Query: 974  PVGIRGVFDGVIENMHLHWKYRELVKLITKQKTLAFVEDTSRLLEYESGGILVAIERVPK 795
            P+GIRGVFDGV+ENMHLHWKYRELVKLITKQKTLA+VEDT+RLLEYES GIL+AIERVPK
Sbjct: 650  PLGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTARLLEYESVGILIAIERVPK 709

Query: 794  GFTLIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHITDLENTIEQMKKEI 615
            GF LIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHI+DLENTIEQMKKEI
Sbjct: 710  GFALIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHISDLENTIEQMKKEI 769

Query: 614  GVSQYAEDGNIKSSED-KQFDNVSDFPQN 531
            GVS+  EDGNI+ S D KQFD+VS  PQN
Sbjct: 770  GVSKDEEDGNIRCSGDLKQFDHVSVLPQN 798


>gb|KDO57458.1| hypothetical protein CISIN_1g0362941mg, partial [Citrus sinensis]
          Length = 769

 Score = 1213 bits (3139), Expect = 0.0
 Identities = 634/780 (81%), Positives = 686/780 (87%), Gaps = 8/780 (1%)
 Frame = -2

Query: 2930 MAFATSKLTELPFRNSLTVTLASHAPPH-NLLLFSSFPRKSTSFQIIKPLSSLRTNQNPK 2754
            MA  TSKLTELPFRNSLT+T  SH+ P  N L FSS  RK+ SFQ++KP SSLRTNQNP+
Sbjct: 1    MALTTSKLTELPFRNSLTLT--SHSTPSLNHLPFSSSSRKTPSFQLLKPFSSLRTNQNPR 58

Query: 2753 TN--HRQFPKPRSPSSSAPWLNKWSRPKPSPPVADNVTKPDGRNQFDREQTT-DSEPLYT 2583
            T+  ++QFPKPRSPS+SAPWLN WSRPKP  P  +N  K  GRNQ D +QT+ DS P Y+
Sbjct: 59   TDSQNQQFPKPRSPSTSAPWLNNWSRPKP--PSTENANKLGGRNQIDEKQTSPDSYPRYS 116

Query: 2582 DNDDKGRNAIERIVLRLRNLGLGTXXXXXXXXXD--VHGSVTGEERLEDLLXXXXX-PNT 2412
            D+D+KGRNAIERIVLRLRNLGLG+         +  ++G+ TGEERLEDLL      PNT
Sbjct: 117  DSDNKGRNAIERIVLRLRNLGLGSDDEEEGEEEEDDINGAATGEERLEDLLRREWVRPNT 176

Query: 2411 ILKEEGEEDEDSLLPWXXXXXXXXXXXE-KAAGEMRKKRTVKAPTLADLTIEDEELRRLR 2235
            +L+E   E++DSLLPW             K AGE R++R +KAPTLA+LTIEDEELRRLR
Sbjct: 177  VLREVEGEEDDSLLPWEREEEENLRAGGEKPAGETRRRR-MKAPTLAELTIEDEELRRLR 235

Query: 2234 RNGMYLRERINVPKAGLTQAVMQKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGG 2055
            RNGMYLRERINVPKAGLTQ VM+KIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGG
Sbjct: 236  RNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGG 295

Query: 2054 LVIWRAGSVMVVYRGSNYTGPSSKPQNPDREGDALFVPDVTSSDGSTVRSVDGETSTLAK 1875
            LVIWRAGSVMVVYRG+NY GPSSKPQ  D +GD LFVP V+S+DGST RSVD       K
Sbjct: 296  LVIWRAGSVMVVYRGNNYAGPSSKPQPLDGDGDTLFVPHVSSTDGSTARSVD------EK 349

Query: 1874 SELAVRNPDHSNTMTEEEAECNNLLDSLGPRFQEWWGTGILPVDADLLPEKVDGYMTPFR 1695
            SE+ VR  DHS  MTEEEAECN+LLDSLGPRFQEWWGTGILPVDADLLP KVDGY TPFR
Sbjct: 350  SEVPVRILDHSKPMTEEEAECNSLLDSLGPRFQEWWGTGILPVDADLLPPKVDGYKTPFR 409

Query: 1694 LLPTGMRSRLTNAEMTDLRKLARSLPCHFALGRNRNHQGLAVAILKLWDKSLVAKIAVKR 1515
            LLPTGMRSRLTNAEMTDLR+LARSLPCHFALGRNRNHQGLAVAILKLW+KSLVAKIAVKR
Sbjct: 410  LLPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKR 469

Query: 1514 GIQNTNNKIMAEELKNLTGGTLLLRNKYYIVIYRGKDFLPPTVAAALAEREECAKQIQDV 1335
            GIQNTNNK+MAEELK+LTGGTLL RNK+YIV+YRGKDFLPP VA+ALAERE+CAKQIQDV
Sbjct: 470  GIQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRGKDFLPPNVASALAEREQCAKQIQDV 529

Query: 1334 EEKVRSKTLEAIPSGETEVQAPAGTLAEFYEAQSRWGREVSAEEREKMVEEASKAKHARL 1155
            EEKVRSKTLEA PSGETE QAPAGTLAEFYEAQ RWGREVSAEEREKMVEEASKAKHARL
Sbjct: 530  EEKVRSKTLEATPSGETEGQAPAGTLAEFYEAQKRWGREVSAEEREKMVEEASKAKHARL 589

Query: 1154 VKRVEHKLAVAQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMKAFL 975
            VKR+EHKLAV+QAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMKAFL
Sbjct: 590  VKRIEHKLAVSQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMKAFL 649

Query: 974  PVGIRGVFDGVIENMHLHWKYRELVKLITKQKTLAFVEDTSRLLEYESGGILVAIERVPK 795
            P+GIRGVFDGV+ENMHLHWKYRELVKLITKQKTLA+VEDT+RLLEYESGGIL+AIERVPK
Sbjct: 650  PLGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTARLLEYESGGILIAIERVPK 709

Query: 794  GFTLIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHITDLENTIEQMKKEI 615
            GF LIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHI+DLENTIEQMKKEI
Sbjct: 710  GFALIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHISDLENTIEQMKKEI 769


>ref|XP_006440981.1| hypothetical protein CICLE_v10018859mg [Citrus clementina]
            gi|557543243|gb|ESR54221.1| hypothetical protein
            CICLE_v10018859mg [Citrus clementina]
          Length = 806

 Score = 1207 bits (3122), Expect = 0.0
 Identities = 632/780 (81%), Positives = 683/780 (87%), Gaps = 8/780 (1%)
 Frame = -2

Query: 2930 MAFATSKLTELPFRNSLTVTLASHAPPH-NLLLFSSFPRKSTSFQIIKPLSSLRTNQNPK 2754
            MA  TSKLTELPFRNSLT+T  SH+ P  N L FSS  RK+ SFQ++KP SSLRTNQNP+
Sbjct: 1    MALTTSKLTELPFRNSLTLT--SHSTPSLNHLPFSSSSRKTPSFQLLKPFSSLRTNQNPR 58

Query: 2753 TN--HRQFPKPRSPSSSAPWLNKWSRPKPSPPVADNVTKPDGRNQFDREQTT-DSEPLYT 2583
            T+  ++QFPKPRSPS+SAPWLN WSRPKP  P  +N  K  GRNQ D +QT+ DS P Y+
Sbjct: 59   TDSQNQQFPKPRSPSTSAPWLNNWSRPKP--PSTENANKLGGRNQIDEKQTSPDSYPRYS 116

Query: 2582 DNDDKGRNAIERIVLRLRNLGLGTXXXXXXXXXD--VHGSVTGEERLEDLLXXXXX-PNT 2412
            D+D+KGRNAIERIVLRLRNLGLG+         +  ++ + TGEERLEDLL      PNT
Sbjct: 117  DSDNKGRNAIERIVLRLRNLGLGSDDEEEGEEEEDDINDAATGEERLEDLLRREWVRPNT 176

Query: 2411 ILKEEGEEDEDSLLPWXXXXXXXXXXXE-KAAGEMRKKRTVKAPTLADLTIEDEELRRLR 2235
            +L+E   E++DSLLPW             K AGE R++R +KAPTLA+LTIEDEELRRLR
Sbjct: 177  VLREVEGEEDDSLLPWEREEEENLRAGGEKPAGETRRRR-MKAPTLAELTIEDEELRRLR 235

Query: 2234 RNGMYLRERINVPKAGLTQAVMQKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGG 2055
            RNGMYLRERINVPKAGLTQ VM+KIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGG
Sbjct: 236  RNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGG 295

Query: 2054 LVIWRAGSVMVVYRGSNYTGPSSKPQNPDREGDALFVPDVTSSDGSTVRSVDGETSTLAK 1875
            LVIWRAGSVMVVYRGSNY GPSSKPQ  D +GD LFVP V+S+DGST RSVD       K
Sbjct: 296  LVIWRAGSVMVVYRGSNYAGPSSKPQPIDGDGDTLFVPHVSSTDGSTARSVD------EK 349

Query: 1874 SELAVRNPDHSNTMTEEEAECNNLLDSLGPRFQEWWGTGILPVDADLLPEKVDGYMTPFR 1695
            SE+ VR  DHS  MTEEEAECN+LLDSLGPRFQEWWGTGILPVDADLLP KVDGY TPFR
Sbjct: 350  SEVPVRILDHSKPMTEEEAECNSLLDSLGPRFQEWWGTGILPVDADLLPPKVDGYKTPFR 409

Query: 1694 LLPTGMRSRLTNAEMTDLRKLARSLPCHFALGRNRNHQGLAVAILKLWDKSLVAKIAVKR 1515
            LLPTGMRSRLTNAEMTDLR+LARSLPCHFALGRNRNHQGLAVAILKLW+KSLVAKIAVKR
Sbjct: 410  LLPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKR 469

Query: 1514 GIQNTNNKIMAEELKNLTGGTLLLRNKYYIVIYRGKDFLPPTVAAALAEREECAKQIQDV 1335
            GIQNTNNK+MAEELK+LTGGTLL RNK+YIV+YRGKDFLPP VA+ALAERE+CAKQIQDV
Sbjct: 470  GIQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRGKDFLPPNVASALAEREQCAKQIQDV 529

Query: 1334 EEKVRSKTLEAIPSGETEVQAPAGTLAEFYEAQSRWGREVSAEEREKMVEEASKAKHARL 1155
            EEKVRSKTLEA PSGETE QAPAGTLAEFYEAQ RWGREVSAEEREKMVEEASKAKH RL
Sbjct: 530  EEKVRSKTLEATPSGETEGQAPAGTLAEFYEAQKRWGREVSAEEREKMVEEASKAKHGRL 589

Query: 1154 VKRVEHKLAVAQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMKAFL 975
            VKR+EHKLAV+QAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMKAFL
Sbjct: 590  VKRIEHKLAVSQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMKAFL 649

Query: 974  PVGIRGVFDGVIENMHLHWKYRELVKLITKQKTLAFVEDTSRLLEYESGGILVAIERVPK 795
            P+GIRGVFDGV+ENMHLHWKYRELVKLITKQKTLA+VEDT+RLLEYES GIL+AIERVPK
Sbjct: 650  PLGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTARLLEYESVGILIAIERVPK 709

Query: 794  GFTLIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHITDLENTIEQMKKEI 615
            GF LIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHI+DLENTIEQMKKEI
Sbjct: 710  GFALIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHISDLENTIEQMKKEI 769


>ref|XP_012093011.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Jatropha curcas]
            gi|802797401|ref|XP_012093012.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1, chloroplastic
            [Jatropha curcas] gi|643686960|gb|KDP20125.1|
            hypothetical protein JCGZ_05894 [Jatropha curcas]
          Length = 839

 Score = 1037 bits (2682), Expect = 0.0
 Identities = 559/815 (68%), Positives = 646/815 (79%), Gaps = 15/815 (1%)
 Frame = -2

Query: 2930 MAFATSKLTELPFRNSLTVTLASHAPPHNLLLFSSFPRKSTSFQIIKPLS---SLRTNQN 2760
            MA  T+KLTELP RNSL +T  SH+      LFSS   K +   + KP S   SLRTN+ 
Sbjct: 1    MAITTAKLTELPLRNSLPLT--SHS------LFSS-TSKPSFHSLKKPFSFSSSLRTNKY 51

Query: 2759 PKTNHRQFPKPRSPSSSAPWLNKWSRPKPSP-PVADNVTKPDGRNQFDREQTTDSEPLYT 2583
            P       PK   PS ++PWL+KW  P P+P P    V + +G+++      T   P   
Sbjct: 52   PN------PKSPIPSLNSPWLSKWGPPSPAPAPAPRQVARSNGQDK------TQFSP--- 96

Query: 2582 DNDDKGRNAIERIVLRLRNLGLGTXXXXXXXXXDV------HGSVTGEERLEDLLXXXXX 2421
              + KG+NAIERIVLRLRNLGLG+         D          VTG+ERL DLL     
Sbjct: 97   --EGKGQNAIERIVLRLRNLGLGSDDEDDDGEEDKGIDRGDKAEVTGDERLADLLQREWV 154

Query: 2420 -PNTILKEEGEEDEDSL-LPWXXXXXXXXXXXEKAAGEMRKKRTVKAPTLADLTIEDEEL 2247
             P+TI     +E+ D L LPW            +   E  +KRTVKAPTLA+LTIEDEEL
Sbjct: 155  RPDTIFSNRDDEESDDLVLPWQRKEIEREERGGEGGRE--RKRTVKAPTLAELTIEDEEL 212

Query: 2246 RRLRRNGMYLRERINVPKAGLTQAVMQKIHDKWRKDELVRLKFHEVLATDMKTAHEIVER 2067
            RRLR+ GM++RERI+VPKAGLT+ V++KIHDKWRK ELVRLKFHEVLA DMKTAHEI ER
Sbjct: 213  RRLRKMGMFVRERISVPKAGLTKDVLEKIHDKWRKQELVRLKFHEVLAHDMKTAHEITER 272

Query: 2066 RTGGLVIWRAGSVMVVYRGSNYTGPSSKPQNPDREGDALFVPDVTSSDGSTVRSVDGETS 1887
            RTGGLVIWRAGSVM+VYRGSNY GP SKPQ+ D+EGDALF+PDV+S D  T+R+ DG +S
Sbjct: 273  RTGGLVIWRAGSVMMVYRGSNYEGPPSKPQSVDKEGDALFIPDVSSPDTETLRNHDGVSS 332

Query: 1886 TLAKSELAVRNPDHSNTMTEEEAECNNLLDSLGPRFQEWWGTGILPVDADLLPEKVDGYM 1707
            T+ K ELA+   + +  MTEEEAE N+LLDSLGPRF+EWWGTGILPVDADLLP K+ GY 
Sbjct: 333  TVKKRELAIGRMNSAENMTEEEAEFNSLLDSLGPRFEEWWGTGILPVDADLLPPKIPGYK 392

Query: 1706 TPFRLLPTGMRSRLTNAEMTDLRKLARSLPCHFALGRNRNHQGLAVAILKLWDKSLVAKI 1527
            TPFRLLPTGMRSRLTNAEMT+LRKLA++LPCHFALGRNRNHQGLA AI K+W+KSLVAKI
Sbjct: 393  TPFRLLPTGMRSRLTNAEMTNLRKLAKTLPCHFALGRNRNHQGLAAAIRKIWEKSLVAKI 452

Query: 1526 AVKRGIQNTNNKIMAEELKNLTGGTLLLRNKYYIVIYRGKDFLPPTVAAALAEREECAKQ 1347
            AVKRGIQNTNNK+MA+ELK LTGG LLLRNKYYIVIYRGKDFLP +VAAALAER+E  KQ
Sbjct: 453  AVKRGIQNTNNKLMADELKMLTGGILLLRNKYYIVIYRGKDFLPTSVAAALAERQELTKQ 512

Query: 1346 IQDVEEKVRSKTLEAIPSGETEVQAPAGTLAEFYEAQSRWGREVSAEEREKMVEEASKAK 1167
            IQDVEEKVRS+ +E   S E + +A AGTLAEFYEAQ+RWG+ +SAEEREKM+E+A+++K
Sbjct: 513  IQDVEEKVRSRGVETALSEEGQGKALAGTLAEFYEAQARWGKTISAEEREKMIEDAARSK 572

Query: 1166 HARLVKRVEHKLAVAQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRM 987
             AR+VKR+EHKLAVAQAKKLRAERLL+KIEASM+PSGPDYDQETITDEERAMFRRVGLRM
Sbjct: 573  RARVVKRIEHKLAVAQAKKLRAERLLSKIEASMLPSGPDYDQETITDEERAMFRRVGLRM 632

Query: 986  KAFLPVGIRGVFDGVIENMHLHWKYRELVKLITKQKTLAFVEDTSRLLEYESGGILVAIE 807
            KA+LP+GIRGVFDGVIENMHLHWK+RELVKLI+KQKTLAFVEDT+RLLEYESGGILVAIE
Sbjct: 633  KAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESGGILVAIE 692

Query: 806  RVPKGFTLIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHITDLENTIEQM 627
            RVPKGF LI+YRGKNYRRPI+LRPRNLLTKAKALKRSVAMQRHEALSQHI++LE TIE+M
Sbjct: 693  RVPKGFALIYYRGKNYRRPINLRPRNLLTKAKALKRSVAMQRHEALSQHISELERTIEEM 752

Query: 626  KKEIGVSQYAEDGNIKSSEDKQ---FDNVSDFPQN 531
            KKEIG S   ED N  +SE K+    +N+SDF Q+
Sbjct: 753  KKEIGFSPEEEDENNWTSEPKEHGRLNNLSDFTQS 787


>ref|XP_007036533.1| CRS1 / YhbY domain-containing protein [Theobroma cacao]
            gi|508773778|gb|EOY21034.1| CRS1 / YhbY domain-containing
            protein [Theobroma cacao]
          Length = 919

 Score = 1028 bits (2659), Expect = 0.0
 Identities = 559/814 (68%), Positives = 640/814 (78%), Gaps = 14/814 (1%)
 Frame = -2

Query: 2930 MAFATSKLTELPFRNSLTVTLASHA-PPHNLLLFSSFPRKSTSFQIIKPLSSLRTNQNP- 2757
            MAFAT+K TE+P R SL     S++    +L LF S P+ S  F+  +P SSLRT  +P 
Sbjct: 66   MAFATTKFTEMPLRTSLPFASYSYSYSSSSLNLFFSAPKPS--FRFFRPFSSLRTGNSPS 123

Query: 2756 -KTNHRQFP------KPRSPSSSAPWLNKWSRPKPSPPVADNVTKPDGRNQFDREQTTDS 2598
             K N   +P       P + S+S+  L  WS P      +  V + DG      +  TD 
Sbjct: 124  SKFNRYSYPWDQEASVPPNSSASSSSLQAWSSP------SQKVIQSDG------DDKTDV 171

Query: 2597 EPLYTDNDDKGRNAIERIVLRLRNLGLGTXXXXXXXXXDVHGS---VTGEERLEDLLXXX 2427
            E  Y D D K ++AIERIVLRLRNLGLG+             +   VTGEERL DLL   
Sbjct: 172  ETRYFDRD-KSQSAIERIVLRLRNLGLGSDDEDEGEDETDQYNSTPVTGEERLGDLLKRE 230

Query: 2426 XX-PNTILKEEGEEDEDSLLPWXXXXXXXXXXXEKAAGEMRKKRTVKAPTLADLTIEDEE 2250
               P+T+L E   E E+++LPW           E   G   KKR V+APTLA+LTIEDEE
Sbjct: 231  WVRPDTMLIER--EKEEAVLPWERDEAEVEVVKEGVLGV--KKRRVRAPTLAELTIEDEE 286

Query: 2249 LRRLRRNGMYLRERINVPKAGLTQAVMQKIHDKWRKDELVRLKFHEVLATDMKTAHEIVE 2070
            LRRLRR GMYLRERINVPKAG+TQAV++KIHDKWRK+ELVRLKFHEVLATDMKTAHEIVE
Sbjct: 287  LRRLRRMGMYLRERINVPKAGITQAVLEKIHDKWRKEELVRLKFHEVLATDMKTAHEIVE 346

Query: 2069 RRTGGLVIWRAGSVMVVYRGSNYTGPSSKPQNPDREGDALFVPDVTSSDGSTVRSVDGET 1890
            RRTGGLV+WR+GSVMVVYRGSNY GPS + Q+ DREG+ALF+PDV+S+  +   S  G+T
Sbjct: 347  RRTGGLVLWRSGSVMVVYRGSNYEGPS-RSQSIDREGEALFIPDVSSASNAVRGSETGKT 405

Query: 1889 STLAKSELAVRNPDHSNTMTEEEAECNNLLDSLGPRFQEWWGTGILPVDADLLPEKVDGY 1710
            ST  K E  V  P+ S +MTEEEAE N+LLD +GPRF EWWGTG+LPVDADLLP+K+ GY
Sbjct: 406  STPEKCEPVVVKPERSESMTEEEAEYNSLLDGVGPRFVEWWGTGVLPVDADLLPQKIPGY 465

Query: 1709 MTPFRLLPTGMRSRLTNAEMTDLRKLARSLPCHFALGRNRNHQGLAVAILKLWDKSLVAK 1530
             TPFRLLP GMR RLTNAEMT+LRKLA+SLPCHFALGRNRNHQGLA AI+KLW+KSLV K
Sbjct: 466  KTPFRLLPAGMRPRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSLVVK 525

Query: 1529 IAVKRGIQNTNNKIMAEELKNLTGGTLLLRNKYYIVIYRGKDFLPPTVAAALAEREECAK 1350
            IAVKRGIQNTNNK+MAEELKNLTGG LLLRNKY+IVIYRGKDFLP +VAAALAER+E  K
Sbjct: 526  IAVKRGIQNTNNKLMAEELKNLTGGVLLLRNKYFIVIYRGKDFLPTSVAAALAERQELTK 585

Query: 1349 QIQDVEEKVRSKTLEAIPSGETEVQAPAGTLAEFYEAQSRWGREVSAEEREKMVEEASKA 1170
            QIQDVEEKVR + +E   SGE + +APAGTLAEFYEAQ+ WGRE+SAEEREKM+EEASKA
Sbjct: 586  QIQDVEEKVRIRAVEPAQSGEDKGEAPAGTLAEFYEAQACWGREISAEEREKMIEEASKA 645

Query: 1169 KHARLVKRVEHKLAVAQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLR 990
            KHARLVKRVEHKLAVAQAKKLRAERLLAKIE+SM+P+ PDYDQETITDEER MFRRVGLR
Sbjct: 646  KHARLVKRVEHKLAVAQAKKLRAERLLAKIESSMIPAAPDYDQETITDEERVMFRRVGLR 705

Query: 989  MKAFLPVGIRGVFDGVIENMHLHWKYRELVKLITKQKTLAFVEDTSRLLEYESGGILVAI 810
            MK +LP+GIRGVFDGVIENMHLHWK+RELVKLI+KQKTLAFVEDT+RLLE+ESGGILVAI
Sbjct: 706  MKPYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTARLLEFESGGILVAI 765

Query: 809  ERVPKGFTLIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHITDLENTIEQ 630
            ERVPKG+ LI+YRGKNY RPISLRPRNLLTKAKALKRSVAMQRHEALSQHI++LE TIE+
Sbjct: 766  ERVPKGYALIYYRGKNYHRPISLRPRNLLTKAKALKRSVAMQRHEALSQHISELERTIEE 825

Query: 629  MKKEIGVSQYAEDGNIK-SSEDKQFDNVSDFPQN 531
            MKKEIG SQ  ED + + S E  QFD VS+  Q+
Sbjct: 826  MKKEIGASQDVEDEDSQVSGEHGQFDPVSELTQS 859


>ref|XP_010094746.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Morus
            notabilis] gi|587867514|gb|EXB56911.1| Chloroplastic
            group IIA intron splicing facilitator CRS1 [Morus
            notabilis]
          Length = 838

 Score = 1019 bits (2635), Expect = 0.0
 Identities = 555/828 (67%), Positives = 637/828 (76%), Gaps = 29/828 (3%)
 Frame = -2

Query: 2927 AFATSKLTELPFRNSLTVTLASHAPPHNLLLFSSFPRKSTSFQIIKPLSSLRTNQNPKTN 2748
            AF  +K +ELP RNSL +T  SH+   NLL+ SS P  + SF I+K   S++T +     
Sbjct: 3    AFTVTKFSELPLRNSLPLT--SHSHSLNLLISSSSP--NPSFHILKTFCSVKTTERSSYP 58

Query: 2747 HR-QFPKPRSPSSS---------APWLNKWSRPKPSPPVADN---VTKPDGRNQFDREQT 2607
             + Q PKP S SSS         APWLNKW      PPV  +   V +   R++ DR  T
Sbjct: 59   WKDQNPKPSSSSSSSSHRHKPPSAPWLNKW------PPVESSDRKVAESTDRDRTDRPDT 112

Query: 2606 TDSEPLYTDNDDKGRNAIERIVLRLRNLGLGTXXXXXXXXXDVHG-------SVTGEERL 2448
                  Y D D +GRNAIERIVLRLRNLGLG+            G        VTGEE+L
Sbjct: 113  VG----YVDRD-RGRNAIERIVLRLRNLGLGSDDEDEDDKEGDIGLDGQDAMPVTGEEKL 167

Query: 2447 EDLLXXXXXPNTILKEEGEEDEDSLLPWXXXXXXXXXXXEKAAGEMRKKRTVKAPTLADL 2268
             DLL         + EE E  +D  LPW            +   E+RK+R V APTLA+L
Sbjct: 168  GDLLRREWIRPDFVLEEEESKDDLTLPWEREEEEKGVD--EGTRELRKRR-VNAPTLAEL 224

Query: 2267 TIEDEELRRLRRNGMYLRERINVPKAGLTQAVMQKIHDKWRKDELVRLKFHEVLATDMKT 2088
            TIEDEELRRLRR GM+LR+RI+VPKAGLTQAV++KIHDKWRK+ELVRLKFHEVLA DMKT
Sbjct: 225  TIEDEELRRLRRMGMFLRDRISVPKAGLTQAVLEKIHDKWRKEELVRLKFHEVLAHDMKT 284

Query: 2087 AHEIVERRTGGLVIWRAGSVMVVYRGSNYTGPSSKPQNPDREGDALFVPDVTSSDGSTVR 1908
            AHEIVERRTGGLV WR+GSVMVVYRGSNY GP  K Q  ++E DALF+PDV+S++    R
Sbjct: 285  AHEIVERRTGGLVTWRSGSVMVVYRGSNYEGPP-KTQPVNKERDALFIPDVSSAENFLTR 343

Query: 1907 SVDGETSTLAKSELAVRNPDHSNTMTEEEAECNNLLDSLGPRFQEWWGTGILPVDADLLP 1728
            S D  TS   KSE  VRNP     MTEEEAE N+LLD LGPRF EWWGTG++PVDADLLP
Sbjct: 344  SGDSLTSNAEKSETPVRNPVSVQNMTEEEAEFNSLLDDLGPRFDEWWGTGVIPVDADLLP 403

Query: 1727 EKVDGYMTPFRLLPTGMRSRLTNAEMTDLRKLARSLPCHFALGRNRNHQGLAVAILKLWD 1548
             K+ GY TPFRLLPTGMRSRLTN EMT+LRK+A+SLP HFALGRNRNHQGLA AI+KLW+
Sbjct: 404  PKIPGYKTPFRLLPTGMRSRLTNGEMTNLRKVAKSLPSHFALGRNRNHQGLAAAIIKLWE 463

Query: 1547 KSLVAKIAVKRGIQNTNNKIMAEELKNLTGGTLLLRNKYYIVIYRGKDFLPPTVAAALAE 1368
            KSLVAKIAVKRGIQNTNNK+MAEELKNLTGG LLLRNKYYIVIYRGKDFLP TVAA LAE
Sbjct: 464  KSLVAKIAVKRGIQNTNNKLMAEELKNLTGGVLLLRNKYYIVIYRGKDFLPTTVAATLAE 523

Query: 1367 REECAKQIQDVEEKVR---------SKTLEAIPSGETEVQAPAGTLAEFYEAQSRWGREV 1215
            R++ AKQ+QD+EE+VR          K ++++PSGE E QA AGTLAEFYEAQ+RWGRE+
Sbjct: 524  RQKLAKQVQDLEEQVRVQDIEQKMQKKAVDSVPSGEEEGQALAGTLAEFYEAQARWGREI 583

Query: 1214 SAEEREKMVEEASKAKHARLVKRVEHKLAVAQAKKLRAERLLAKIEASMVPSGPDYDQET 1035
            ++EEREKM+EEA+ AKHARLVKR+EHK AVAQAKKLRAE+LLAKIEASMVP+GPDYDQET
Sbjct: 584  TSEEREKMIEEAAVAKHARLVKRIEHKAAVAQAKKLRAEKLLAKIEASMVPAGPDYDQET 643

Query: 1034 ITDEERAMFRRVGLRMKAFLPVGIRGVFDGVIENMHLHWKYRELVKLITKQKTLAFVEDT 855
            IT+EER MFRRVGLRMKA+LP+GIRGVFDGVIENMHLHWK+RELVKLITKQKTLAFVEDT
Sbjct: 644  ITEEERVMFRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLITKQKTLAFVEDT 703

Query: 854  SRLLEYESGGILVAIERVPKGFTLIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHE 675
            +RLLEYESGGILVAIERVPKGF LI+YRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHE
Sbjct: 704  ARLLEYESGGILVAIERVPKGFALIYYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHE 763

Query: 674  ALSQHITDLENTIEQMKKEIGVSQYAEDGNIKSSEDKQFDNVSDFPQN 531
            ALSQHI++LE TIEQM+ +I  S+  +D    S+++   DNVS+F Q+
Sbjct: 764  ALSQHISELETTIEQMQDKIVASKSGQDEGSWSTDENLNDNVSEFIQS 811


>ref|XP_011045859.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Populus euphratica]
          Length = 806

 Score = 1008 bits (2607), Expect = 0.0
 Identities = 535/808 (66%), Positives = 633/808 (78%), Gaps = 8/808 (0%)
 Frame = -2

Query: 2930 MAFATSKLTELPFRNSLTVTLASHAPPHNLLLFSSFPRKSTSFQIIKPLSSLRTNQNPKT 2751
            M F T+KLTELP R + T+ L+SH+    +  F S  +  +    I   SSLRTN+ PKT
Sbjct: 1    MTFTTAKLTELPLRTTSTLPLSSHSLLSKIAAFQSLKKPFS----IATSSSLRTNKTPKT 56

Query: 2750 NHRQFPKPRSPSSSAPWLNKWSRPKPSPPVADNVTKPDGRNQFDREQTTDSEPLYTDNDD 2571
              +          +  W++KW      P    ++  P  +        +  +P Y  ND 
Sbjct: 57   QQK----------NPNWISKWK-----PSQNHSIKNPPSK-------VSQEKPHYFSND- 93

Query: 2570 KGRNAIERIVLRLRNLGLGTXXXXXXXXXDVH----GSVTGEERLEDLLXXXXX-PNTIL 2406
            KG+NAIERIVLRLRNLGLG+         +      G +TGEERL DLL      P+T++
Sbjct: 94   KGQNAIERIVLRLRNLGLGSDDEDELEGLEGSEINGGGLTGEERLGDLLKREWVRPDTVV 153

Query: 2405 --KEEGEEDEDSLLPWXXXXXXXXXXXEKAAGEMRKKRTVKAPTLADLTIEDEELRRLRR 2232
               +EG + ++S+LPW            +   E  +KR VKAPTLA+LTIEDEELRRLRR
Sbjct: 154  FSNDEGSDSDESVLPWEREESGAVEM--EGGIESGRKRRVKAPTLAELTIEDEELRRLRR 211

Query: 2231 NGMYLRERINVPKAGLTQAVMQKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGGL 2052
             GM++RERI++PKAG+T AV++ IHD+WRK+ELVRLKFHEVLA DMKTAHEIVERRTGGL
Sbjct: 212  MGMFIRERISIPKAGITNAVLENIHDRWRKEELVRLKFHEVLAHDMKTAHEIVERRTGGL 271

Query: 2051 VIWRAGSVMVVYRGSNYTGPSSKPQNPDREGDALFVPDVTSSDGSTVRSVDGETSTLAKS 1872
            VIWRAGSVMVV+RG+NY GP SK Q  DREGDALFVPDV+S+D    RS +  TS+  KS
Sbjct: 272  VIWRAGSVMVVFRGTNYQGPPSKLQPADREGDALFVPDVSSTDSVITRSSNIATSSSEKS 331

Query: 1871 ELAVRNPDHSNTMTEEEAECNNLLDSLGPRFQEWWGTGILPVDADLLPEKVDGYMTPFRL 1692
            +L +R  + +  MTEEEAE N+LLD LGPRF+EWWGTG+LPVDADLLP KV GY TPFRL
Sbjct: 332  KLVMRITEPTENMTEEEAELNSLLDGLGPRFEEWWGTGLLPVDADLLPPKVPGYKTPFRL 391

Query: 1691 LPTGMRSRLTNAEMTDLRKLARSLPCHFALGRNRNHQGLAVAILKLWDKSLVAKIAVKRG 1512
            LP GMR+RLTNAEMT++RKLA++LPCHFALGRNRNHQGLAVAILKLW+KSLVAKIAVKRG
Sbjct: 392  LPVGMRARLTNAEMTNMRKLAKALPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRG 451

Query: 1511 IQNTNNKIMAEELKNLTGGTLLLRNKYYIVIYRGKDFLPPTVAAALAEREECAKQIQDVE 1332
            IQNTNNK+MA+ELK LTGG LLLRNKYYIVI+RGKDFLP +VAAALAER+E  KQIQDVE
Sbjct: 452  IQNTNNKLMADELKMLTGGVLLLRNKYYIVIFRGKDFLPQSVAAALAERQEATKQIQDVE 511

Query: 1331 EKVRSKTLEAIPSGETEVQAPAGTLAEFYEAQSRWGREVSAEEREKMVEEASKAKHARLV 1152
            E+VRS ++EA PSGE E +A AGTLAEFYEAQ+RWGR++S EEREKM+EEASKAK ARLV
Sbjct: 512  ERVRSNSVEAAPSGEDEGKALAGTLAEFYEAQARWGRDISTEEREKMIEEASKAKTARLV 571

Query: 1151 KRVEHKLAVAQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMKAFLP 972
            KR EHKLA+AQAKKLRAERLL+KIE +MVPSGPD+DQETI++EER MFRRVGLRMKA+LP
Sbjct: 572  KRTEHKLAIAQAKKLRAERLLSKIETTMVPSGPDFDQETISEEERVMFRRVGLRMKAYLP 631

Query: 971  VGIRGVFDGVIENMHLHWKYRELVKLITKQKTLAFVEDTSRLLEYESGGILVAIERVPKG 792
            +GIRGVFDGVIENMHLHWK+RELVKLI+KQKTLAFVEDT++LLEYESGG+LVAIERVPKG
Sbjct: 632  LGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTAKLLEYESGGVLVAIERVPKG 691

Query: 791  FTLIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHITDLENTIEQMKKEIG 612
            F LI+YRGKNYRRPIS+RPRNLLTKAKALKRSVAMQRHEALSQHI +LE  IE+M KE+G
Sbjct: 692  FALIYYRGKNYRRPISIRPRNLLTKAKALKRSVAMQRHEALSQHIFELEKNIEEMVKEMG 751

Query: 611  VSQYAEDGNIKSSED-KQFDNVSDFPQN 531
            +S+  E+ N  SSE+    +NVS   Q+
Sbjct: 752  LSKEEENENNWSSEEHAPLNNVSKLTQS 779


>ref|XP_008240263.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Prunus mume]
          Length = 820

 Score = 1001 bits (2588), Expect = 0.0
 Identities = 538/813 (66%), Positives = 632/813 (77%), Gaps = 13/813 (1%)
 Frame = -2

Query: 2930 MAFATSKLTELPFRNSLTVTLASHAPPHNLLLFSSFPRKSTSFQIIKPLSSLRTNQNPKT 2751
            MAF T+K++E+P R+SL +T  SH+      LFS+      SF+++KP SSL+  ++   
Sbjct: 1    MAFTTAKISEMPLRSSLPLT--SHSSSSLNFLFSA---SKPSFRLLKPFSSLKATEH-SG 54

Query: 2750 NHRQFPKPRSPSSSAPWLNKW-----SRPKPSPPVADNVTKPDGRNQFDREQTTDSEPLY 2586
            N    P  +S + SAPWLNKW     S   P   V + V +  GR+Q  +  TT     Y
Sbjct: 55   NPNAKPSHKSRTPSAPWLNKWPPRNSSAELPRQKVNEKVNESHGRDQAVKANTTR----Y 110

Query: 2585 TDNDDKGRNAIERIVLRLRNLGLGTXXXXXXXXXDVHG------SVTGEERLEDLLXXXX 2424
             D + KG++AIERIVLRLRNLGLG+         ++ G      + +GEE+L DLL    
Sbjct: 111  FDKN-KGQSAIERIVLRLRNLGLGSDDEEEDDGLELDGQDSMQPAASGEEKLGDLLQREW 169

Query: 2423 X-PNTILKEEGEEDEDSLLPWXXXXXXXXXXXEKAAGEMRKKRTVKAPTLADLTIEDEEL 2247
              P+ +L E+   DE +L PW            K      +KR VKAP+LA+LTIEDEEL
Sbjct: 170  VRPDYVLAEQKSNDEVAL-PWEKEEEISEEEEVKGL----RKRRVKAPSLAELTIEDEEL 224

Query: 2246 RRLRRNGMYLRERINVPKAGLTQAVMQKIHDKWRKDELVRLKFHEVLATDMKTAHEIVER 2067
            +RLRR GM LRERI+VPKAG+TQAV++KIHD WRK+ELVRLKFHEVLA DMKTAHEIVER
Sbjct: 225  KRLRRMGMVLRERISVPKAGITQAVLEKIHDTWRKEELVRLKFHEVLALDMKTAHEIVER 284

Query: 2066 RTGGLVIWRAGSVMVVYRGSNYTGPSSKPQNPDREGDALFVPDVTSSDGSTVRSVDGETS 1887
            RTGGLV+WR+GSVMVVYRGSNY GPS K Q  D EG ALF+PDV+S++ S  RS +  TS
Sbjct: 285  RTGGLVLWRSGSVMVVYRGSNYKGPS-KSQTVDGEGGALFIPDVSSAETSATRSGNDATS 343

Query: 1886 TLAKSELAVRNPDHSNTMTEEEAECNNLLDSLGPRFQEWWGTGILPVDADLLPEKVDGYM 1707
                +E AV+ P H   MTEEEAE N+LLD LGPRF EWWGTG+LPVDADLLP+ + GY 
Sbjct: 344  GPDNTEKAVKIPAHLPNMTEEEAEFNSLLDDLGPRFVEWWGTGVLPVDADLLPKTIPGYK 403

Query: 1706 TPFRLLPTGMRSRLTNAEMTDLRKLARSLPCHFALGRNRNHQGLAVAILKLWDKSLVAKI 1527
            TPFRLLPTGMRSRLTNAEMT+LRKLA+SLPCHFALGRNRNHQGLA AI+KLW+KS VAKI
Sbjct: 404  TPFRLLPTGMRSRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLASAIIKLWEKSSVAKI 463

Query: 1526 AVKRGIQNTNNKIMAEELKNLTGGTLLLRNKYYIVIYRGKDFLPPTVAAALAEREECAKQ 1347
            AVKRGIQNTNNK+MAEELK LTGG LLLRNKYYIV YRGKDFLP +VAAALAER+E  KQ
Sbjct: 464  AVKRGIQNTNNKLMAEELKTLTGGVLLLRNKYYIVFYRGKDFLPTSVAAALAERQELTKQ 523

Query: 1346 IQDVEEKVRSKTLEAIPSGETEVQAPAGTLAEFYEAQSRWGREVSAEEREKMVEEASKAK 1167
            +QDVEEK+R K ++   SG  E QA AGTLAEFYEAQ+RWGRE+SAEEREKM+EE SKAK
Sbjct: 524  VQDVEEKMRIKAIDTASSGAEEGQALAGTLAEFYEAQARWGREISAEEREKMIEEDSKAK 583

Query: 1166 HARLVKRVEHKLAVAQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRM 987
            +ARLVKR+EHKL VAQAKKLRAE+LL+KIE+SM+P+GPDYDQET+TDEER MFRRVGLRM
Sbjct: 584  NARLVKRIEHKLGVAQAKKLRAEKLLSKIESSMLPAGPDYDQETVTDEERVMFRRVGLRM 643

Query: 986  KAFLPVGIRGVFDGVIENMHLHWKYRELVKLITKQKTLAFVEDTSRLLEYESGGILVAIE 807
            KA+LP+GIRGVFDGV+ENMHLHWK+RELVKLI+KQKTLAFVEDT+RLLE+ESGGILVAIE
Sbjct: 644  KAYLPLGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEDTARLLEFESGGILVAIE 703

Query: 806  RVPKGFTLIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHITDLENTIEQM 627
            RVPKGF LI+YRGKNY+RPI+LRPRNLLTKAKALKRSVAMQRHEALSQHI++LE TIEQM
Sbjct: 704  RVPKGFALIYYRGKNYQRPITLRPRNLLTKAKALKRSVAMQRHEALSQHISELEKTIEQM 763

Query: 626  KKEIGVSQ-YAEDGNIKSSEDKQFDNVSDFPQN 531
              EIGVS+  A +    S +  Q    S+F Q+
Sbjct: 764  SSEIGVSEDIAYESTWSSRDPDQIHRASEFVQS 796


>ref|XP_007211308.1| hypothetical protein PRUPE_ppa001468mg [Prunus persica]
            gi|462407043|gb|EMJ12507.1| hypothetical protein
            PRUPE_ppa001468mg [Prunus persica]
          Length = 820

 Score = 1001 bits (2588), Expect = 0.0
 Identities = 540/814 (66%), Positives = 634/814 (77%), Gaps = 14/814 (1%)
 Frame = -2

Query: 2930 MAFATSKLTELPFRNSLTVTLASHAPPHNLLLFSSFPRKSTSFQIIKPLSSLRTNQNPKT 2751
            MAF T+K++E+P R+SL +T  SH+      LFS+      SF+++KP SSL+  ++   
Sbjct: 1    MAFTTAKISEMPLRSSLPLT--SHSSSSLNFLFSA---SKPSFRLLKPFSSLKATEH-SG 54

Query: 2750 NHRQFPKPRSPSSSAPWLNKWSRPKPSPP------VADNVTKPDGRNQFDREQTTDSEPL 2589
            N    P  +S   SAPWLN W  P+ SP       V + V +  GR+Q  +  TT     
Sbjct: 55   NPNAKPSHKSKPPSAPWLNTWP-PRNSPAELPCQKVNEKVNESHGRDQAVKANTTR---- 109

Query: 2588 YTDNDDKGRNAIERIVLRLRNLGLGTXXXXXXXXXDVHG------SVTGEERLEDLLXXX 2427
            Y D + KG++AIERIVLRLRNLGLG+          + G      + +GEE+L DLL   
Sbjct: 110  YFDKN-KGQSAIERIVLRLRNLGLGSDDEEEDDGLGLDGQDSMQPAESGEEKLGDLLQRE 168

Query: 2426 XX-PNTILKEEGEEDEDSLLPWXXXXXXXXXXXEKAAGEMRKKRTVKAPTLADLTIEDEE 2250
               P+ +L E+   DE +L PW            K      +KR VKAP+LA+LTIEDEE
Sbjct: 169  WVRPDYVLAEQKSNDEVAL-PWEKEDEISEEEEVKGL----RKRRVKAPSLAELTIEDEE 223

Query: 2249 LRRLRRNGMYLRERINVPKAGLTQAVMQKIHDKWRKDELVRLKFHEVLATDMKTAHEIVE 2070
            L+RLRR GM LRERI+VPKAG+TQAV++KIHD WRK+ELVRLKFHEVLA DMKTAHEIVE
Sbjct: 224  LKRLRRMGMVLRERISVPKAGITQAVLEKIHDTWRKEELVRLKFHEVLALDMKTAHEIVE 283

Query: 2069 RRTGGLVIWRAGSVMVVYRGSNYTGPSSKPQNPDREGDALFVPDVTSSDGSTVRSVDGET 1890
            RRTGGLV+WR+GSVMVVYRGSNY GPS K Q  DREG ALF+PDV+S++ S  RS +  T
Sbjct: 284  RRTGGLVLWRSGSVMVVYRGSNYKGPS-KSQTVDREGGALFIPDVSSAETSATRSGNDAT 342

Query: 1889 STLAKSELAVRNPDHSNTMTEEEAECNNLLDSLGPRFQEWWGTGILPVDADLLPEKVDGY 1710
            S    +E AV+ P H   MTEEEAE N+LLD LGPRF EWWGTG+LPVDADLLP+ + GY
Sbjct: 343  SGPDNNEKAVKIPAHLPNMTEEEAEFNSLLDDLGPRFVEWWGTGVLPVDADLLPKTIPGY 402

Query: 1709 MTPFRLLPTGMRSRLTNAEMTDLRKLARSLPCHFALGRNRNHQGLAVAILKLWDKSLVAK 1530
             TPFRLLPTGMRSRLTNAEMT+LRKLA+SLPCHFALGRNRNHQGLA AI+KLW+KS VAK
Sbjct: 403  KTPFRLLPTGMRSRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLASAIIKLWEKSSVAK 462

Query: 1529 IAVKRGIQNTNNKIMAEELKNLTGGTLLLRNKYYIVIYRGKDFLPPTVAAALAEREECAK 1350
            IAVKRGIQNTNNK+MAEELK LTGG LLLRNKYYIV YRGKDFLP +VAAALAER+E  K
Sbjct: 463  IAVKRGIQNTNNKLMAEELKTLTGGVLLLRNKYYIVFYRGKDFLPTSVAAALAERQELTK 522

Query: 1349 QIQDVEEKVRSKTLEAIPSGETEVQAPAGTLAEFYEAQSRWGREVSAEEREKMVEEASKA 1170
            Q+QDVEEK+R K ++A  SG  E QA AGTLAEFYEAQ+RWGRE+SAEEREKM+EE SKA
Sbjct: 523  QVQDVEEKMRIKAIDAASSGAEEGQALAGTLAEFYEAQARWGREISAEEREKMIEEDSKA 582

Query: 1169 KHARLVKRVEHKLAVAQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLR 990
            K+ARLVKR+EHKL VAQAKKLRAE+LL+KIE+SM+P+GPDYDQET+TDEER MFRRVGLR
Sbjct: 583  KNARLVKRIEHKLGVAQAKKLRAEKLLSKIESSMLPAGPDYDQETVTDEERVMFRRVGLR 642

Query: 989  MKAFLPVGIRGVFDGVIENMHLHWKYRELVKLITKQKTLAFVEDTSRLLEYESGGILVAI 810
            MKA+LP+GIRGVFDGV+ENMHLHWK+RELVKLI+KQKTLAFVEDT+RLLE+ESGGILVAI
Sbjct: 643  MKAYLPLGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEDTARLLEFESGGILVAI 702

Query: 809  ERVPKGFTLIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHITDLENTIEQ 630
            ERVPKG+ LI+YRGKNY+RPI+LRPRNLLTKAKALKRSVA+QRHEALSQHI++LE TIEQ
Sbjct: 703  ERVPKGYALIYYRGKNYQRPITLRPRNLLTKAKALKRSVAIQRHEALSQHISELEKTIEQ 762

Query: 629  MKKEIGVSQYAEDGNIKSSED-KQFDNVSDFPQN 531
            M  EIGVS+   D +  SS D  Q    S+F Q+
Sbjct: 763  MSSEIGVSEDIADESTWSSRDPDQIHGASEFVQS 796


>ref|XP_011045860.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Populus euphratica]
          Length = 802

 Score =  999 bits (2583), Expect = 0.0
 Identities = 533/808 (65%), Positives = 630/808 (77%), Gaps = 8/808 (0%)
 Frame = -2

Query: 2930 MAFATSKLTELPFRNSLTVTLASHAPPHNLLLFSSFPRKSTSFQIIKPLSSLRTNQNPKT 2751
            M F T+KLTELP R + T+ L+SH+    +  F S  +  +    I   SSLRTN+ PKT
Sbjct: 1    MTFTTAKLTELPLRTTSTLPLSSHSLLSKIAAFQSLKKPFS----IATSSSLRTNKTPKT 56

Query: 2750 NHRQFPKPRSPSSSAPWLNKWSRPKPSPPVADNVTKPDGRNQFDREQTTDSEPLYTDNDD 2571
              +          +  W++KW      P    ++  P  +        +  +P Y  ND 
Sbjct: 57   QQK----------NPNWISKWK-----PSQNHSIKNPPSK-------VSQEKPHYFSND- 93

Query: 2570 KGRNAIERIVLRLRNLGLGTXXXXXXXXXDVH----GSVTGEERLEDLLXXXXX-PNTIL 2406
            KG+NAIERIVLRLRNLGLG+         +      G +TGEERL DLL      P+T++
Sbjct: 94   KGQNAIERIVLRLRNLGLGSDDEDELEGLEGSEINGGGLTGEERLGDLLKREWVRPDTVV 153

Query: 2405 --KEEGEEDEDSLLPWXXXXXXXXXXXEKAAGEMRKKRTVKAPTLADLTIEDEELRRLRR 2232
               +EG + ++S+LPW            +   E  +KR VKAPTLA+LTIEDEELRRLRR
Sbjct: 154  FSNDEGSDSDESVLPWEREESGAVEM--EGGIESGRKRRVKAPTLAELTIEDEELRRLRR 211

Query: 2231 NGMYLRERINVPKAGLTQAVMQKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGGL 2052
             GM++RERI++PKAG+T AV++ IHD+WRK+ELVRLKFHEVLA DMKTAHEIVERRTGGL
Sbjct: 212  MGMFIRERISIPKAGITNAVLENIHDRWRKEELVRLKFHEVLAHDMKTAHEIVERRTGGL 271

Query: 2051 VIWRAGSVMVVYRGSNYTGPSSKPQNPDREGDALFVPDVTSSDGSTVRSVDGETSTLAKS 1872
            VIWRAGSVMVV+RG+NY GP SK Q  DREGDALFVPDV+S+D    RS +  TS+  KS
Sbjct: 272  VIWRAGSVMVVFRGTNYQGPPSKLQPADREGDALFVPDVSSTDSVITRSSNIATSSSEKS 331

Query: 1871 ELAVRNPDHSNTMTEEEAECNNLLDSLGPRFQEWWGTGILPVDADLLPEKVDGYMTPFRL 1692
            +L +R  + +  MTEEEAE N+LLD LGPRF+EWWGTG+LPVDADLLP KV GY TPFRL
Sbjct: 332  KLVMRITEPTENMTEEEAELNSLLDGLGPRFEEWWGTGLLPVDADLLPPKVPGYKTPFRL 391

Query: 1691 LPTGMRSRLTNAEMTDLRKLARSLPCHFALGRNRNHQGLAVAILKLWDKSLVAKIAVKRG 1512
            LP GMR+RLTNAEMT++RKLA++LPCHFALGRNRNHQGLAVAILKLW+KSLVAKIAVKRG
Sbjct: 392  LPVGMRARLTNAEMTNMRKLAKALPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRG 451

Query: 1511 IQNTNNKIMAEELKNLTGGTLLLRNKYYIVIYRGKDFLPPTVAAALAEREECAKQIQDVE 1332
            IQNTNNK+MA+ELK LTGG LLLRNKYYIVI+RGKDFLP +VAAALAER+E  KQIQDVE
Sbjct: 452  IQNTNNKLMADELKMLTGGVLLLRNKYYIVIFRGKDFLPQSVAAALAERQEATKQIQDVE 511

Query: 1331 EKVRSKTLEAIPSGETEVQAPAGTLAEFYEAQSRWGREVSAEEREKMVEEASKAKHARLV 1152
            E+VRS ++EA PSGE E +A AGTLAEFYEAQ+RWGR++S EEREKM+EEASKAK ARLV
Sbjct: 512  ERVRSNSVEAAPSGEDEGKALAGTLAEFYEAQARWGRDISTEEREKMIEEASKAKTARLV 571

Query: 1151 KRVEHKLAVAQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMKAFLP 972
            KR EHKLA+AQAKKLRAERLL+KIE +MVPSGPD+DQETI++EER MFRRVGLRMKA+LP
Sbjct: 572  KRTEHKLAIAQAKKLRAERLLSKIETTMVPSGPDFDQETISEEERVMFRRVGLRMKAYLP 631

Query: 971  VGIRGVFDGVIENMHLHWKYRELVKLITKQKTLAFVEDTSRLLEYESGGILVAIERVPKG 792
            +GIRGVFDGVIENMHLHWK+RELVKLI+KQKTLAFVEDT++LLEYESGG+LVAIERVPKG
Sbjct: 632  LGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTAKLLEYESGGVLVAIERVPKG 691

Query: 791  FTLIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHITDLENTIEQMKKEIG 612
            F LI+YRGKNYRRPIS+RPRNLLTKAKALKRSVAMQRHEALSQHI +LE  IE+M    G
Sbjct: 692  FALIYYRGKNYRRPISIRPRNLLTKAKALKRSVAMQRHEALSQHIFELEKNIEEM----G 747

Query: 611  VSQYAEDGNIKSSED-KQFDNVSDFPQN 531
            +S+  E+ N  SSE+    +NVS   Q+
Sbjct: 748  LSKEEENENNWSSEEHAPLNNVSKLTQS 775


>ref|XP_002317913.2| hypothetical protein POPTR_0012s05260g [Populus trichocarpa]
            gi|550326426|gb|EEE96133.2| hypothetical protein
            POPTR_0012s05260g [Populus trichocarpa]
          Length = 807

 Score =  998 bits (2581), Expect = 0.0
 Identities = 531/808 (65%), Positives = 630/808 (77%), Gaps = 8/808 (0%)
 Frame = -2

Query: 2930 MAFATSKLTELPFRNSLTVTLASHAPPHNLLLFSSFPRKSTSFQIIKPLSSLRTNQNPKT 2751
            M F T+KLTELP R + T+ L+SH+    +  F S  +  ++       SSLRTN+ PKT
Sbjct: 2    MTFTTAKLTELPLRTTSTLPLSSHSLLSKIATFQSLKKPFST----ATSSSLRTNKTPKT 57

Query: 2750 NHRQFPKPRSPSSSAPWLNKWSRPKPSPPVADNVTKPDGRNQFDREQTTDSEPLYTDNDD 2571
              +          +  W++KW      P    ++  P         + +  +P Y  ND 
Sbjct: 58   QQK----------NPNWISKWK-----PSQNHSIKNPPS-------EVSQEKPHYFSND- 94

Query: 2570 KGRNAIERIVLRLRNLGLGTXXXXXXXXXDVH----GSVTGEERLEDLLXXXXX-PNTIL 2406
            KG+NAIERIVLRLRNLGLG+         +      G +TGEERL DLL      P+T++
Sbjct: 95   KGQNAIERIVLRLRNLGLGSDDEDELEGLEGSEINGGGLTGEERLGDLLKREWVRPDTVV 154

Query: 2405 --KEEGEEDEDSLLPWXXXXXXXXXXXEKAAGEMRKKRTVKAPTLADLTIEDEELRRLRR 2232
               +EG + ++S+LPW            +   E  +KR  KAPTLA+LTIEDEELRRLRR
Sbjct: 155  FSNDEGSDSDESVLPWEREERGAVEM--EGGIESGRKRRGKAPTLAELTIEDEELRRLRR 212

Query: 2231 NGMYLRERINVPKAGLTQAVMQKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGGL 2052
             GM++RERI++PKAG+T AV++ IHD+WRK+ELVRLKFHEVLA DMKTAHEIVERRTGGL
Sbjct: 213  MGMFIRERISIPKAGITNAVLENIHDRWRKEELVRLKFHEVLAHDMKTAHEIVERRTGGL 272

Query: 2051 VIWRAGSVMVVYRGSNYTGPSSKPQNPDREGDALFVPDVTSSDGSTVRSVDGETSTLAKS 1872
            VIWRAGSVMVV+RG+NY GP SK Q  DREGDALFVPDV+S+D    RS +  TS+  KS
Sbjct: 273  VIWRAGSVMVVFRGTNYQGPPSKLQPADREGDALFVPDVSSTDSVMTRSSNIATSSSEKS 332

Query: 1871 ELAVRNPDHSNTMTEEEAECNNLLDSLGPRFQEWWGTGILPVDADLLPEKVDGYMTPFRL 1692
            +L +R  + +  MTEEEAE N+LLD LGPRF+EWWGTG+LPVDADLLP KV  Y TPFRL
Sbjct: 333  KLVMRITEPTENMTEEEAELNSLLDDLGPRFEEWWGTGLLPVDADLLPPKVPCYKTPFRL 392

Query: 1691 LPTGMRSRLTNAEMTDLRKLARSLPCHFALGRNRNHQGLAVAILKLWDKSLVAKIAVKRG 1512
            LP GMR+RLTNAEMT++RKLA++LPCHFALGRNRNHQGLAVAILKLW+KSLVAKIAVKRG
Sbjct: 393  LPVGMRARLTNAEMTNMRKLAKALPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRG 452

Query: 1511 IQNTNNKIMAEELKNLTGGTLLLRNKYYIVIYRGKDFLPPTVAAALAEREECAKQIQDVE 1332
            IQNTNNK+MA+ELK LTGG LLLRNKYYIVI+RGKDFLP +VAAALAER+E  KQIQDVE
Sbjct: 453  IQNTNNKLMADELKMLTGGVLLLRNKYYIVIFRGKDFLPQSVAAALAERQEVTKQIQDVE 512

Query: 1331 EKVRSKTLEAIPSGETEVQAPAGTLAEFYEAQSRWGREVSAEEREKMVEEASKAKHARLV 1152
            E+VRS ++EA PSGE E +A AGTLAEFYEAQ+RWGR++S EEREKM+EEASKAK ARLV
Sbjct: 513  ERVRSNSVEAAPSGEDEGKALAGTLAEFYEAQARWGRDISTEEREKMIEEASKAKTARLV 572

Query: 1151 KRVEHKLAVAQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMKAFLP 972
            KR EHKLA+AQAKKLRAE LL+KIE +MVPSGPD+DQETI++EER MFRRVGLRMKA+LP
Sbjct: 573  KRTEHKLAIAQAKKLRAESLLSKIETTMVPSGPDFDQETISEEERVMFRRVGLRMKAYLP 632

Query: 971  VGIRGVFDGVIENMHLHWKYRELVKLITKQKTLAFVEDTSRLLEYESGGILVAIERVPKG 792
            +GIRGVFDGVIENMHLHWK+RELVKLI+KQKTLAFVEDT++LLEYESGG+LVAIERVPKG
Sbjct: 633  LGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTAKLLEYESGGVLVAIERVPKG 692

Query: 791  FTLIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHITDLENTIEQMKKEIG 612
            F LI+YRGKNYRRPIS+RPRNLLTKAKALKRSVAMQRHEALSQHI +LE  IE+M KE+G
Sbjct: 693  FALIYYRGKNYRRPISIRPRNLLTKAKALKRSVAMQRHEALSQHIFELEKNIEEMVKEMG 752

Query: 611  VSQYAEDGNIKSSED-KQFDNVSDFPQN 531
            +S+  E+ N  SSE+    +NVS   Q+
Sbjct: 753  LSKEEENENNWSSEEHAPLNNVSKLTQS 780


>ref|XP_012440292.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X3 [Gossypium raimondii]
          Length = 854

 Score =  993 bits (2568), Expect = 0.0
 Identities = 539/811 (66%), Positives = 626/811 (77%), Gaps = 11/811 (1%)
 Frame = -2

Query: 2930 MAFATSKLTELPFRNSLTVTLASHAPPHNLLLFSSFPRKSTSFQIIKPLSSLRTNQNPKT 2751
            MA  T++LTE+P R  L  +  S++   NL  F S P+ S  F      SSLR+  NP +
Sbjct: 1    MAITTTRLTEMPLRTPLPFSSNSYSSSLNL--FFSLPKPSFCF--FTTSSSLRSGTNPGS 56

Query: 2750 NHRQFPKP------RSPSSSAPWLNKWSRPKPSPPVADNVTKPDGRNQFDREQTTDSEPL 2589
               ++  P         SSS+  L  WS P      ++ V + DG  +       DSE  
Sbjct: 57   ISNRYSHPWYHRLSTGASSSSSSLQAWSSP------SEKVIQSDGNGK------ADSETR 104

Query: 2588 YTDNDDKGRNAIERIVLRLRNLGLGTXXXXXXXXXDVHGS---VTGEERLEDLLXXXXX- 2421
            Y +   KG++AI+RIVLRLRNLGLG+             +   VTGEERL DLL      
Sbjct: 105  YLN---KGQSAIDRIVLRLRNLGLGSDDEDEEDDGTDDYNSTPVTGEERLGDLLKREWVR 161

Query: 2420 PNTILKEEGEEDEDSLLPWXXXXXXXXXXXEKAAGEMRKKRTVKAPTLADLTIEDEELRR 2241
            P+T L E+  E E+++LPW           ++  G + KKRTVKAPTLA+LTIEDEELRR
Sbjct: 162  PDTRLIEK--EKEEAVLPWEREEAVVEVVVKE--GGLLKKRTVKAPTLAELTIEDEELRR 217

Query: 2240 LRRNGMYLRERINVPKAGLTQAVMQKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRT 2061
            LRR GM+LRERINVPKAG+T+ V++KIHDKWRK+ELVRLKFHE LA DM+TAHEIVERRT
Sbjct: 218  LRRMGMHLRERINVPKAGITKVVLEKIHDKWRKEELVRLKFHEFLAVDMRTAHEIVERRT 277

Query: 2060 GGLVIWRAGSVMVVYRGSNYTGPSSKPQNPDREGDALFVPDVTSSDGSTVRSVDGETSTL 1881
            GGLVIWR+GSVMVVYRGSNY GPS        EG+ALF+PDV+S+      S  G  ST 
Sbjct: 278  GGLVIWRSGSVMVVYRGSNYEGPSKSQSG---EGEALFIPDVSSAGKR--ESETGSGSTS 332

Query: 1880 AKSELAVRNPDHSNTMTEEEAECNNLLDSLGPRFQEWWGTGILPVDADLLPEKVDGYMTP 1701
             KS+  V  P+ S +MTEEEAE N+LLD LGPRF EWWGTGILPVDADLLP K+ GY TP
Sbjct: 333  EKSDKVVVKPERSESMTEEEAEYNSLLDGLGPRFVEWWGTGILPVDADLLPPKIPGYKTP 392

Query: 1700 FRLLPTGMRSRLTNAEMTDLRKLARSLPCHFALGRNRNHQGLAVAILKLWDKSLVAKIAV 1521
            FRLLP GMR RLTNAEMT+LRK+A+SLPCHFALGRNRNHQGLA AI+KLW+KS+VAKIAV
Sbjct: 393  FRLLPAGMRPRLTNAEMTNLRKIAKSLPCHFALGRNRNHQGLAAAIIKLWEKSVVAKIAV 452

Query: 1520 KRGIQNTNNKIMAEELKNLTGGTLLLRNKYYIVIYRGKDFLPPTVAAALAEREECAKQIQ 1341
            KRGIQNTNNK+MAEELKNLTGG LLLRNKY+IVIYRGKDFLP  VAAALAER++  KQIQ
Sbjct: 453  KRGIQNTNNKLMAEELKNLTGGVLLLRNKYFIVIYRGKDFLPTNVAAALAERQDLTKQIQ 512

Query: 1340 DVEEKVRSKTLEAIPSGETEVQAPAGTLAEFYEAQSRWGREVSAEEREKMVEEASKAKHA 1161
            D EEK+R K +E   SGE + QAPAGTLAEFYEAQ+RWGR++SAEEREKM+EEASKAKHA
Sbjct: 513  DAEEKLRIKAVEPAQSGEDKGQAPAGTLAEFYEAQARWGRDISAEEREKMIEEASKAKHA 572

Query: 1160 RLVKRVEHKLAVAQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMKA 981
            +LVKRVEHKLA+AQAKKLRAERLLAKIEASM+P+ PDYDQETITDEER MFRRVGLRMK 
Sbjct: 573  KLVKRVEHKLAIAQAKKLRAERLLAKIEASMIPAAPDYDQETITDEERVMFRRVGLRMKP 632

Query: 980  FLPVGIRGVFDGVIENMHLHWKYRELVKLITKQKTLAFVEDTSRLLEYESGGILVAIERV 801
            +LP+G+RGVFDGVIENMHLHWK+RELVKLI+KQK LAFVED++RLLEYESGGILVAIERV
Sbjct: 633  YLPLGVRGVFDGVIENMHLHWKHRELVKLISKQKVLAFVEDSARLLEYESGGILVAIERV 692

Query: 800  PKGFTLIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHITDLENTIEQMKK 621
            PKG+ LI+YRGKNYRRPIS+RPRNLLTKAKALKRSVAMQRHEALSQHI+ LENTIEQMKK
Sbjct: 693  PKGYALIYYRGKNYRRPISIRPRNLLTKAKALKRSVAMQRHEALSQHISKLENTIEQMKK 752

Query: 620  EIGVSQYAEDGNIK-SSEDKQFDNVSDFPQN 531
            EI  S+  +D N + S +  QFD VS+F ++
Sbjct: 753  EIDASEDGDDDNNRGSGKHGQFDPVSEFTES 783


>ref|XP_012440291.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Gossypium raimondii]
          Length = 854

 Score =  993 bits (2568), Expect = 0.0
 Identities = 540/811 (66%), Positives = 626/811 (77%), Gaps = 11/811 (1%)
 Frame = -2

Query: 2930 MAFATSKLTELPFRNSLTVTLASHAPPHNLLLFSSFPRKSTSFQIIKPLSSLRTNQNPKT 2751
            MA  T++LTE+P R  L  +  S++   NL  F S P+ S  F      SSLR+  NP +
Sbjct: 1    MAITTTRLTEMPLRTPLPFSSNSYSSSLNL--FFSLPKPSFCF--FTTSSSLRSGTNPGS 56

Query: 2750 NHRQFPKP------RSPSSSAPWLNKWSRPKPSPPVADNVTKPDGRNQFDREQTTDSEPL 2589
               ++  P         SSS+  L  WS P      ++ V + DG  +       DSE  
Sbjct: 57   ISNRYSHPWYHRLSTGASSSSSSLQAWSSP------SEKVIQSDGNGK------ADSETR 104

Query: 2588 YTDNDDKGRNAIERIVLRLRNLGLGTXXXXXXXXXDVHGS---VTGEERLEDLLXXXXX- 2421
            Y +   KG++AI+RIVLRLRNLGLG+             +   VTGEERL DLL      
Sbjct: 105  YLN---KGQSAIDRIVLRLRNLGLGSDDEDEEDDGTDDYNSTPVTGEERLGDLLKREWVR 161

Query: 2420 PNTILKEEGEEDEDSLLPWXXXXXXXXXXXEKAAGEMRKKRTVKAPTLADLTIEDEELRR 2241
            P+T L E+  E E+++LPW           ++  G + KKRTVKAPTLA+LTIEDEELRR
Sbjct: 162  PDTRLIEK--EKEEAVLPWEREEAVVEVVVKE--GGLLKKRTVKAPTLAELTIEDEELRR 217

Query: 2240 LRRNGMYLRERINVPKAGLTQAVMQKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRT 2061
            LRR GM+LRERINVPKAG+T+ V++KIHDKWRK+ELVRLKFHE LA DM+TAHEIVERRT
Sbjct: 218  LRRMGMHLRERINVPKAGITKVVLEKIHDKWRKEELVRLKFHEFLAVDMRTAHEIVERRT 277

Query: 2060 GGLVIWRAGSVMVVYRGSNYTGPSSKPQNPDREGDALFVPDVTSSDGSTVRSVDGETSTL 1881
            GGLVIWR+GSVMVVYRGSNY GPS        EG+ALF+PDV+S+      S  G  ST 
Sbjct: 278  GGLVIWRSGSVMVVYRGSNYEGPSKSQSG---EGEALFIPDVSSAGKR--ESETGSGSTS 332

Query: 1880 AKSELAVRNPDHSNTMTEEEAECNNLLDSLGPRFQEWWGTGILPVDADLLPEKVDGYMTP 1701
             KS+  V  P+ S +MTEEEAE N+LLD LGPRF EWWGTGILPVDADLLP K+ GY TP
Sbjct: 333  EKSDKVVVKPERSESMTEEEAEYNSLLDGLGPRFVEWWGTGILPVDADLLPPKIPGYKTP 392

Query: 1700 FRLLPTGMRSRLTNAEMTDLRKLARSLPCHFALGRNRNHQGLAVAILKLWDKSLVAKIAV 1521
            FRLLP GMR RLTNAEMT+LRK+A+SLPCHFALGRNRNHQGLA AI+KLW+KS+VAKIAV
Sbjct: 393  FRLLPAGMRPRLTNAEMTNLRKIAKSLPCHFALGRNRNHQGLAAAIIKLWEKSVVAKIAV 452

Query: 1520 KRGIQNTNNKIMAEELKNLTGGTLLLRNKYYIVIYRGKDFLPPTVAAALAEREECAKQIQ 1341
            KRGIQNTNNK+MAEELKNLTGG LLLRNKY+IVIYRGKDFLP  VAAALAER++  KQIQ
Sbjct: 453  KRGIQNTNNKLMAEELKNLTGGVLLLRNKYFIVIYRGKDFLPTNVAAALAERQDLTKQIQ 512

Query: 1340 DVEEKVRSKTLEAIPSGETEVQAPAGTLAEFYEAQSRWGREVSAEEREKMVEEASKAKHA 1161
            D EEK+R K +E   SGE + QAPAGTLAEFYEAQ+RWGR++SAEEREKM+EEASKAKHA
Sbjct: 513  DAEEKLRIKAVEPAQSGEDKGQAPAGTLAEFYEAQARWGRDISAEEREKMIEEASKAKHA 572

Query: 1160 RLVKRVEHKLAVAQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMKA 981
            +LVKRVEHKLA+AQAKKLRAERLLAKIEASM+P+ PDYDQETITDEER MFRRVGLRMK 
Sbjct: 573  KLVKRVEHKLAIAQAKKLRAERLLAKIEASMIPAAPDYDQETITDEERVMFRRVGLRMKP 632

Query: 980  FLPVGIRGVFDGVIENMHLHWKYRELVKLITKQKTLAFVEDTSRLLEYESGGILVAIERV 801
            +LP+G+RGVFDGVIENMHLHWK+RELVKLI+KQK LAFVED++RLLEYESGGILVAIERV
Sbjct: 633  YLPLGVRGVFDGVIENMHLHWKHRELVKLISKQKVLAFVEDSARLLEYESGGILVAIERV 692

Query: 800  PKGFTLIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHITDLENTIEQMKK 621
            PKG+ LI+YRGKNYRRPIS+RPRNLLTKAKALKRSVAMQRHEALSQHI+ LENTIEQMKK
Sbjct: 693  PKGYALIYYRGKNYRRPISIRPRNLLTKAKALKRSVAMQRHEALSQHISKLENTIEQMKK 752

Query: 620  EIGVSQYAEDGNIKSS-EDKQFDNVSDFPQN 531
            EI  S+   D N +SS +  QFD VS+F ++
Sbjct: 753  EIDASEDGGDDNNRSSGKHGQFDPVSEFTES 783


>ref|XP_012440290.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Gossypium raimondii]
            gi|763785914|gb|KJB52985.1| hypothetical protein
            B456_008G286900 [Gossypium raimondii]
          Length = 868

 Score =  989 bits (2558), Expect = 0.0
 Identities = 540/825 (65%), Positives = 626/825 (75%), Gaps = 25/825 (3%)
 Frame = -2

Query: 2930 MAFATSKLTELPFRNSLTVTLASHAPPHNLLLFSSFPRKSTSFQIIKPLSSLRTNQNPKT 2751
            MA  T++LTE+P R  L  +  S++   NL  F S P+ S  F      SSLR+  NP +
Sbjct: 1    MAITTTRLTEMPLRTPLPFSSNSYSSSLNL--FFSLPKPSFCF--FTTSSSLRSGTNPGS 56

Query: 2750 NHRQFPKP------RSPSSSAPWLNKWSRPKPSPPVADNVTKPDGRNQFDREQTTDSEPL 2589
               ++  P         SSS+  L  WS P      ++ V + DG  +       DSE  
Sbjct: 57   ISNRYSHPWYHRLSTGASSSSSSLQAWSSP------SEKVIQSDGNGK------ADSETR 104

Query: 2588 YTDNDDKGRNAIERIVLRLRNLGLGTXXXXXXXXXDVHGS---VTGEERLEDLLXXXXX- 2421
            Y +   KG++AI+RIVLRLRNLGLG+             +   VTGEERL DLL      
Sbjct: 105  YLN---KGQSAIDRIVLRLRNLGLGSDDEDEEDDGTDDYNSTPVTGEERLGDLLKREWVR 161

Query: 2420 PNTILKEEGEEDEDSLLPWXXXXXXXXXXXEKAAGEMRKKRTVKAPTLADLTIEDEELRR 2241
            P+T L E+  E E+++LPW           ++  G + KKRTVKAPTLA+LTIEDEELRR
Sbjct: 162  PDTRLIEK--EKEEAVLPWEREEAVVEVVVKE--GGLLKKRTVKAPTLAELTIEDEELRR 217

Query: 2240 LRRNGMYLRERINVPKAGLTQAVMQKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRT 2061
            LRR GM+LRERINVPKAG+T+ V++KIHDKWRK+ELVRLKFHE LA DM+TAHEIVERRT
Sbjct: 218  LRRMGMHLRERINVPKAGITKVVLEKIHDKWRKEELVRLKFHEFLAVDMRTAHEIVERRT 277

Query: 2060 GGLVIWRAGSVMVVYRGSNYTGPSSKPQNPDREGDALFVPDVTSSDGSTVRSVDGETSTL 1881
            GGLVIWR+GSVMVVYRGSNY GPS        EG+ALF+PDV+S+      S  G  ST 
Sbjct: 278  GGLVIWRSGSVMVVYRGSNYEGPSKSQSG---EGEALFIPDVSSAGKR--ESETGSGSTS 332

Query: 1880 AKSELAVRNPDHSNTMTEEEAECNNLLDSLGPRFQEWWGTGILPVDADLLPEKVDGYMTP 1701
             KS+  V  P+ S +MTEEEAE N+LLD LGPRF EWWGTGILPVDADLLP K+ GY TP
Sbjct: 333  EKSDKVVVKPERSESMTEEEAEYNSLLDGLGPRFVEWWGTGILPVDADLLPPKIPGYKTP 392

Query: 1700 FRLLPTGMRSRLTNAEMTDLRKLARSLPCHFALGRNRNHQGLAVAILKLWDKSLVAKIAV 1521
            FRLLP GMR RLTNAEMT+LRK+A+SLPCHFALGRNRNHQGLA AI+KLW+KS+VAKIAV
Sbjct: 393  FRLLPAGMRPRLTNAEMTNLRKIAKSLPCHFALGRNRNHQGLAAAIIKLWEKSVVAKIAV 452

Query: 1520 KRGIQNTNNKIMAEELKNLTGGTLLLRNKYYIVIYRGKDFLPPTVAAALAEREECAKQIQ 1341
            KRGIQNTNNK+MAEELKNLTGG LLLRNKY+IVIYRGKDFLP  VAAALAER++  KQIQ
Sbjct: 453  KRGIQNTNNKLMAEELKNLTGGVLLLRNKYFIVIYRGKDFLPTNVAAALAERQDLTKQIQ 512

Query: 1340 DVEEKVRSKTLEAIPSGETEVQAPAGTLAEFYEAQSRWGREVSAEEREKMVEEASKAKHA 1161
            D EEK+R K +E   SGE + QAPAGTLAEFYEAQ+RWGR++SAEEREKM+EEASKAKHA
Sbjct: 513  DAEEKLRIKAVEPAQSGEDKGQAPAGTLAEFYEAQARWGRDISAEEREKMIEEASKAKHA 572

Query: 1160 RLVKRVEHKLAVAQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMKA 981
            +LVKRVEHKLA+AQAKKLRAERLLAKIEASM+P+ PDYDQETITDEER MFRRVGLRMK 
Sbjct: 573  KLVKRVEHKLAIAQAKKLRAERLLAKIEASMIPAAPDYDQETITDEERVMFRRVGLRMKP 632

Query: 980  FLPVGIRGVFDGVIENMHLHWKYRELVKLITKQKTLAFVEDTSRLLEYESGGILVAIERV 801
            +LP+G+RGVFDGVIENMHLHWK+RELVKLI+KQK LAFVED++RLLEYESGGILVAIERV
Sbjct: 633  YLPLGVRGVFDGVIENMHLHWKHRELVKLISKQKVLAFVEDSARLLEYESGGILVAIERV 692

Query: 800  PKGFTLIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHITDLENTIEQMKK 621
            PKG+ LI+YRGKNYRRPIS+RPRNLLTKAKALKRSVAMQRHEALSQHI+ LENTIEQMKK
Sbjct: 693  PKGYALIYYRGKNYRRPISIRPRNLLTKAKALKRSVAMQRHEALSQHISKLENTIEQMKK 752

Query: 620  EIGVS---------------QYAEDGNIKSSEDKQFDNVSDFPQN 531
            EI  S               Q+ +D N  S +  QFD VS+F ++
Sbjct: 753  EIDASEDGGDDNNRSSGEHGQFDDDNNRGSGKHGQFDPVSEFTES 797


>ref|XP_009347186.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Pyrus x bretschneideri]
          Length = 832

 Score =  989 bits (2558), Expect = 0.0
 Identities = 526/799 (65%), Positives = 631/799 (78%), Gaps = 9/799 (1%)
 Frame = -2

Query: 2930 MAFATSKLTELPFRNSLTVTLASHAPPHNLLLFSSFPRKSTSFQIIKPLSS-LRTNQNPK 2754
            MAF T+K++E+P RNSL +T  SH+P    LLFS+      SF+I+K  SS +RT ++  
Sbjct: 1    MAFTTAKISEMPLRNSLPLT--SHSPSSLSLLFSA---PKPSFRIVKTFSSSVRTTEHGG 55

Query: 2753 TNHRQFPKPRS-PSSSAPWLNKW-SRPKPSPPVADNVTKPDGRNQFDREQTTDSEPLYTD 2580
              + + P+ +S P+S APWLNKW +R  P+     NV      +Q  RE+   ++     
Sbjct: 56   NPNAKPPQHKSRPASPAPWLNKWPNRSSPAELPRQNVNNKVNESQ-GREKDGKADSTRYF 114

Query: 2579 NDDKGRNAIERIVLRLRNLGLGTXXXXXXXXXDVHGS-----VTGEERLEDLLXXXXX-P 2418
            + DKG+NAIERIV RLRNLGLG+          + G       +GEE+L DLL      P
Sbjct: 115  DKDKGQNAIERIVFRLRNLGLGSDDEGEDDGIGLDGQDSVPVASGEEKLGDLLQREWVRP 174

Query: 2417 NTILKEEGEEDEDSLLPWXXXXXXXXXXXEKAAGEMRKKRTVKAPTLADLTIEDEELRRL 2238
            + +L+EE   DE +L PW           E+  G   +KR  KAP+LA+LTIEDEEL+RL
Sbjct: 175  DYVLEEEKSADEVAL-PWEKEEEEEVNDKEEVKG--LRKRRGKAPSLAELTIEDEELKRL 231

Query: 2237 RRNGMYLRERINVPKAGLTQAVMQKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTG 2058
            RR GM LRERI+VPKAG+TQAV++KIHD WRK ELVRLKFHEVLA DMKTAHEIVERRTG
Sbjct: 232  RRMGMVLRERISVPKAGITQAVLEKIHDTWRKTELVRLKFHEVLALDMKTAHEIVERRTG 291

Query: 2057 GLVIWRAGSVMVVYRGSNYTGPSSKPQNPDREGDALFVPDVTSSDGSTVRSVDGETSTLA 1878
            GLV+WR+GSVMVVYRGSNY GPS   Q  D E   LF+PDV+S++ S  RS +  TS   
Sbjct: 292  GLVLWRSGSVMVVYRGSNYKGPSQS-QTVDGERGGLFIPDVSSAETSVTRSGNDATSGPD 350

Query: 1877 KSELAVRNPDHSNTMTEEEAECNNLLDSLGPRFQEWWGTGILPVDADLLPEKVDGYMTPF 1698
             +E A++ P+  + MTEEEAE ++LLD LGPRF+EWWGTG+LPVDADLLP+ + GY TPF
Sbjct: 351  NTEQALKIPERVHNMTEEEAEFHSLLDDLGPRFEEWWGTGVLPVDADLLPKTIPGYKTPF 410

Query: 1697 RLLPTGMRSRLTNAEMTDLRKLARSLPCHFALGRNRNHQGLAVAILKLWDKSLVAKIAVK 1518
            RLLPTGMRSRLTNAEMT LRKLA+SLPCHFALGRNRNHQGLA+AI+KLW+KS VAKIAVK
Sbjct: 411  RLLPTGMRSRLTNAEMTTLRKLAKSLPCHFALGRNRNHQGLALAIIKLWEKSSVAKIAVK 470

Query: 1517 RGIQNTNNKIMAEELKNLTGGTLLLRNKYYIVIYRGKDFLPPTVAAALAEREECAKQIQD 1338
            RGIQNTNNK+MAEE+KNLTGG LLLRNKYYIVIYRGKDFLP +VAAALAER+E  KQ+QD
Sbjct: 471  RGIQNTNNKLMAEEIKNLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALAERQELTKQVQD 530

Query: 1337 VEEKVRSKTLEAIPSGETEVQAPAGTLAEFYEAQSRWGREVSAEEREKMVEEASKAKHAR 1158
            VEEK+R K ++A  +G  E QA AGTLAEFYEAQ+RWGRE+SAEERE+M+EE S+AK+A+
Sbjct: 531  VEEKMRIKAIDAASTGAVEGQALAGTLAEFYEAQARWGREISAEERERMIEEDSRAKNAK 590

Query: 1157 LVKRVEHKLAVAQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMKAF 978
            LV+R+EHKL VAQAKKLRAE+LL+KIE+ M+P+GPDYDQETITDEER MFRRVGLRMKA+
Sbjct: 591  LVRRIEHKLGVAQAKKLRAEKLLSKIESLMLPAGPDYDQETITDEERVMFRRVGLRMKAY 650

Query: 977  LPVGIRGVFDGVIENMHLHWKYRELVKLITKQKTLAFVEDTSRLLEYESGGILVAIERVP 798
            LP+GIRGVFDGV+ENMHLHWK+RELVKLI+KQKTLAFVEDT+RLLEYESGGILVAIERVP
Sbjct: 651  LPLGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESGGILVAIERVP 710

Query: 797  KGFTLIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHITDLENTIEQMKKE 618
            KG+ LI+YRGKNY+RPI+LRPRNLLTKAKALKRSVAMQRHEALSQHI++LE  IEQMK +
Sbjct: 711  KGYALIYYRGKNYQRPITLRPRNLLTKAKALKRSVAMQRHEALSQHISELEKNIEQMKSQ 770

Query: 617  IGVSQYAEDGNIKSSEDKQ 561
            +G+S+   D +  SS D +
Sbjct: 771  VGISEDDVDESSWSSRDPE 789


>gb|KHG01961.1| Chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Gossypium arboreum]
          Length = 823

 Score =  989 bits (2556), Expect = 0.0
 Identities = 536/811 (66%), Positives = 624/811 (76%), Gaps = 12/811 (1%)
 Frame = -2

Query: 2930 MAFATSKLTELPFRNSLTVTLASHAPPHNLLLFSSFPRKSTSFQIIKPLSSLRTNQNPKT 2751
            MA  T++LTE+P R     +  S++   NL  F S P  + SF+ +   SSLR+  NP +
Sbjct: 1    MAITTTRLTEMPLRTPFPFSSNSYSSSLNL--FFSLP--NPSFRFLTASSSLRSGINPGS 56

Query: 2750 NHRQFPKP-------RSPSSSAPWLNKWSRPKPSPPVADNVTKPDGRNQFDREQTTDSEP 2592
               ++  P        +  SS+  L  WS P      ++ V + DG  +       DSE 
Sbjct: 57   ISNRYSHPWYHRLSTGASCSSSSSLQAWSSP------SEKVIQSDGNGK------VDSET 104

Query: 2591 LYTDNDDKGRNAIERIVLRLRNLGLGTXXXXXXXXXDVHGSVT---GEERLEDLLXXXXX 2421
             Y +   KG++AI+RIVLRLRNLGLG+             + T   GEERL DLL     
Sbjct: 105  RYLN---KGQSAIDRIVLRLRNLGLGSDDEDEEDDGTDDYNSTPVIGEERLGDLLKREWV 161

Query: 2420 -PNTILKEEGEEDEDSLLPWXXXXXXXXXXXEKAAGEMRKKRTVKAPTLADLTIEDEELR 2244
             P+T L E+  E E+++LPW           ++  G + KKRTVKAPTLA+LTIEDEELR
Sbjct: 162  RPDTRLIEK--EKEEAVLPWEREEAVVEVVVKE--GGLLKKRTVKAPTLAELTIEDEELR 217

Query: 2243 RLRRNGMYLRERINVPKAGLTQAVMQKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERR 2064
            RLRR GM+LRERINVPKAG+T+ V++KIHDKWRK+ELVRLKFHE LA DM+TAHEIVERR
Sbjct: 218  RLRRMGMHLRERINVPKAGITKVVLEKIHDKWRKEELVRLKFHEFLAVDMRTAHEIVERR 277

Query: 2063 TGGLVIWRAGSVMVVYRGSNYTGPSSKPQNPDREGDALFVPDVTSSDGSTVRSVDGETST 1884
            TGGLVIWR+GSVMVVYRGSNY GPS        EG+ALF+PDV+S+      S  G  ST
Sbjct: 278  TGGLVIWRSGSVMVVYRGSNYEGPSKSQSG---EGEALFIPDVSSAGKR--ESETGSAST 332

Query: 1883 LAKSELAVRNPDHSNTMTEEEAECNNLLDSLGPRFQEWWGTGILPVDADLLPEKVDGYMT 1704
              KS+  V  P+ S +MTEEEAE N+LLD LGPRF EWWGTGILPVDADLLP K+ GY T
Sbjct: 333  SEKSDKVVVKPECSESMTEEEAEYNSLLDGLGPRFVEWWGTGILPVDADLLPPKIPGYKT 392

Query: 1703 PFRLLPTGMRSRLTNAEMTDLRKLARSLPCHFALGRNRNHQGLAVAILKLWDKSLVAKIA 1524
            PFRLLP GMR RLTNAEMT+LRK+A+SLPCHFALGRNRNHQGLA AI+KLW+KSLVAKIA
Sbjct: 393  PFRLLPAGMRPRLTNAEMTNLRKIAKSLPCHFALGRNRNHQGLAAAIIKLWEKSLVAKIA 452

Query: 1523 VKRGIQNTNNKIMAEELKNLTGGTLLLRNKYYIVIYRGKDFLPPTVAAALAEREECAKQI 1344
            VKRGIQNTNNK+MAEELKNLTGG LLLRNKY+IVIYRGKDFLP  VAAALAER++  KQI
Sbjct: 453  VKRGIQNTNNKLMAEELKNLTGGVLLLRNKYFIVIYRGKDFLPTNVAAALAERQDLTKQI 512

Query: 1343 QDVEEKVRSKTLEAIPSGETEVQAPAGTLAEFYEAQSRWGREVSAEEREKMVEEASKAKH 1164
            QD EEK+R K +E   SGE + QAPAGTLAEFYEAQ+RWGR++SAEEREKM+EEASKAKH
Sbjct: 513  QDAEEKLRIKAVEPAQSGEDKGQAPAGTLAEFYEAQARWGRDISAEEREKMIEEASKAKH 572

Query: 1163 ARLVKRVEHKLAVAQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMK 984
            A+L+KRVEHKLA+AQAKKLRAERLLAKIEASM+P+ PDYDQETITDEER MFRRVGLRMK
Sbjct: 573  AKLIKRVEHKLAIAQAKKLRAERLLAKIEASMIPAAPDYDQETITDEERVMFRRVGLRMK 632

Query: 983  AFLPVGIRGVFDGVIENMHLHWKYRELVKLITKQKTLAFVEDTSRLLEYESGGILVAIER 804
             +LP+G+RGVFDGVIENMHLHWK+RELVKLI+KQK LAFVED++RLLEYESGGILVAIER
Sbjct: 633  PYLPLGVRGVFDGVIENMHLHWKHRELVKLISKQKVLAFVEDSARLLEYESGGILVAIER 692

Query: 803  VPKGFTLIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHITDLENTIEQMK 624
            VPKG+ LI+YRGKNYRRPIS+RPRNLLTKAKALKRSVAMQRHEAL QHI+ LENTIEQMK
Sbjct: 693  VPKGYALIYYRGKNYRRPISIRPRNLLTKAKALKRSVAMQRHEALGQHISKLENTIEQMK 752

Query: 623  KEIGVSQYAEDGNIK-SSEDKQFDNVSDFPQ 534
            KEIG S+  +D N + S E  QFD VS+  +
Sbjct: 753  KEIGASEDGDDDNNRGSGEHGQFDPVSELTE 783


>ref|XP_004300521.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Fragaria vesca subsp. vesca]
          Length = 820

 Score =  987 bits (2552), Expect = 0.0
 Identities = 544/830 (65%), Positives = 627/830 (75%), Gaps = 30/830 (3%)
 Frame = -2

Query: 2930 MAFATSKLTELPFRNSLTVTLASHAPPHNLLLFSSFPRKSTSFQIIKPLSSLRTNQ---N 2760
            MAFAT+K++E+P RNSL +T  SH+P    LL         SF+I+KP S+LRT +   N
Sbjct: 1    MAFATAKISEMPLRNSLPLT--SHSPSSLHLLLKP------SFRILKPFSALRTTEHGGN 52

Query: 2759 PKTNHRQFPKPRSPSSSAPWLNKW---SRPKPSPP---VADNVTKPDGRNQFDREQTTDS 2598
            P   H+   KP S SS+APWLNKW    +    PP    +D V + DGR     E+ + +
Sbjct: 53   PNARHKS--KPSSSSSTAPWLNKWPSRGQAPAEPPRQKFSDRVKESDGR-----EKPSSN 105

Query: 2597 EPLYTDNDDKGRNAIERIVLRLRNLGLGTXXXXXXXXXDVH----GSVTGEERLEDLLXX 2430
               Y D D KG++AIERIV RLRNLGLG           V      + +G E+L DLL  
Sbjct: 106  AARYVDKD-KGQSAIERIVFRLRNLGLGDDEEEEESGDGVELDSMPAASGAEKLGDLLQR 164

Query: 2429 XXX-PNTILKEEGEEDEDSLLPWXXXXXXXXXXXEKAAGEMRKKRTVKAPTLADLTIEDE 2253
                P+ IL EE + D+D  LPW            +    MRK R  KAP+LA+LTIEDE
Sbjct: 165  EWVRPDYILAEE-KGDDDVALPWEKEEEELSED--EEVKGMRKARRSKAPSLAELTIEDE 221

Query: 2252 ELRRLRRNGMYLRERINVPKAGLTQAVMQKIHDKWRKDELVRLKFHEVLATDMKTAHEIV 2073
            ELRRLRR GM LRERI+VPKAG+TQAV++KIHDKWRK+ELVRLKFHEVLA DMKTAHEIV
Sbjct: 222  ELRRLRRLGMVLRERISVPKAGITQAVLEKIHDKWRKEELVRLKFHEVLAHDMKTAHEIV 281

Query: 2072 ERRTGGLVIWRAGSVMVVYRGSNYTGPSSKPQNPDREGDALFVPDVTSSDGSTVRSVDGE 1893
            ERRTGGLV+WR+GSVMVVYRGSNY GPS K +   R GDALF+PDV+S++ S  R  +  
Sbjct: 282  ERRTGGLVLWRSGSVMVVYRGSNYKGPS-KSEPAGRGGDALFIPDVSSAETSVTRGGNDA 340

Query: 1892 TSTLAKSELAVRNPDH-SNTMTEEEAECNNLLDSLGPRFQEWWGTGILPVDADLLPEKVD 1716
            TS   K+E AV+ P+     MT+EEAE N+LLD LGPRF E+WGTGILPVDADLLP+ + 
Sbjct: 341  TSAPDKTEQAVKIPEPLPKKMTDEEAEFNSLLDELGPRFVEYWGTGILPVDADLLPKTIP 400

Query: 1715 GYMTPFRLLPTGMRSRLTNAEMTDLRKLARSLPCHFALGRNRNHQGLAVAILKLWDKSLV 1536
            GY TPFRLLPTGMRSRLTNAEMT+LRKLA+S+PCHFALGRNRNHQGLA AILK+W+KS V
Sbjct: 401  GYKTPFRLLPTGMRSRLTNAEMTNLRKLAKSIPCHFALGRNRNHQGLASAILKVWEKSSV 460

Query: 1535 AKIAVKRGIQNTNNKIMAEELKNLTGGTLLLRNKYYIVIYRGKDFLPPTVAAALAEREEC 1356
            AKIAVKRGIQNTNNKIMAEELK LTGG LLLRNKYYIVIYRGKDF+P TVA ALAER+E 
Sbjct: 461  AKIAVKRGIQNTNNKIMAEELKALTGGVLLLRNKYYIVIYRGKDFVPTTVATALAERQEL 520

Query: 1355 AKQIQDVEEKVRSKTLEAIPSGETEVQAPAGTLAEFYEAQSRWGREVSAEEREKMVEEAS 1176
             KQ+QDVEE VR K ++A  S   E QA AGTLAEFYEAQ+RWGRE+SAEER+KM+EE S
Sbjct: 521  TKQVQDVEEIVRIKPIDAAASSTEEGQALAGTLAEFYEAQARWGREISAEERKKMIEEDS 580

Query: 1175 KAKHARLVKRVEHKLAVAQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVG 996
            KAK AR  KR+EHKL VAQAKKLRAE LL KIE++M+P+GPDYDQETITDEER MFRRVG
Sbjct: 581  KAKMARRAKRIEHKLGVAQAKKLRAESLLNKIESAMLPAGPDYDQETITDEERVMFRRVG 640

Query: 995  LRMKAFLPVGIRGVFDGVIENMHLHWKYRELVKLITKQKTLAFVEDTSRLLEYESGGILV 816
            LRMKA+LP+GIRGVFDGVIENMHLHWK+RELVKLI+KQKTLAFVED++RLLEYESGGILV
Sbjct: 641  LRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDSARLLEYESGGILV 700

Query: 815  AIERVPKGFTLIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHITDLENTI 636
            AIERVPKG+ LI+YRGKNY+RPI+LRPRNLLTKAKALKRSVAMQRHEALSQHI +LE TI
Sbjct: 701  AIERVPKGYALIYYRGKNYQRPITLRPRNLLTKAKALKRSVAMQRHEALSQHIEELERTI 760

Query: 635  EQMKKEIGVS---------------QYAEDGNIKSSEDKQFDNVSDFPQN 531
            EQM+ EIG+S               Q   D     SED+  D  SD   N
Sbjct: 761  EQMRSEIGISEDVDNERTWGSRDPHQSGHDSEFNQSEDEDSDMESDGSYN 810


>ref|XP_008393315.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Malus domestica]
          Length = 813

 Score =  986 bits (2548), Expect = 0.0
 Identities = 532/813 (65%), Positives = 635/813 (78%), Gaps = 14/813 (1%)
 Frame = -2

Query: 2930 MAFATSKLTELPFRNSLTVTLASHAPPHNLLLFSSFPRKSTSFQIIKPLSS-LRTNQNPK 2754
            MAF T+K++E+P R+SL +T  SH+P    LLFS+      SF+I+K  SS +RT ++  
Sbjct: 1    MAFTTAKISEMPLRSSLPLT--SHSPSSLRLLFSA---PKPSFRIVKTFSSTVRTTEHGG 55

Query: 2753 TNHRQFPKPRS-PSSSAPWLNKW---SRPK--PSPPVADNVTKPDGRNQFDREQTTDSEP 2592
            + + + P+ +S P+SSAPWLNKW   S P   P   V D V++  GR Q  +  TT    
Sbjct: 56   SANAKPPQHKSRPASSAPWLNKWPNRSSPTELPRQKVNDKVSESHGREQDGKADTTR--- 112

Query: 2591 LYTDNDDKGRNAIERIVLRLRNLGLGTXXXXXXXXXDVHG-----SVTGEERLEDLLXXX 2427
             Y D D KG++AIERIVLRLRNLGLG+          + G     +  GEE+L DLL   
Sbjct: 113  -YFDKD-KGQSAIERIVLRLRNLGLGSDDEEZDDGIGLDGQDPVPAAXGEEKLGDLLQRE 170

Query: 2426 XX-PNTILKEEGEEDEDSLLPWXXXXXXXXXXXEKAAGEMRKKRTVKAPTLADLTIEDEE 2250
               P+ +L+EE   DE +L PW            K      +KR  KAP+LA+LTIEDEE
Sbjct: 171  WVRPDYVLEEEKSGDEVAL-PWEKEEEVSDKEEVKGL----RKRRGKAPSLAELTIEDEE 225

Query: 2249 LRRLRRNGMYLRERINVPKAGLTQAVMQKIHDKWRKDELVRLKFHEVLATDMKTAHEIVE 2070
            L+RLRR GM LRERI+VPKAG+TQAV++KIHD WRK ELVRLKFHEVLA DMKTAHEIVE
Sbjct: 226  LKRLRRMGMVLRERISVPKAGITQAVLEKIHDMWRKTELVRLKFHEVLALDMKTAHEIVE 285

Query: 2069 RRTGGLVIWRAGSVMVVYRGSNYTGPSSKPQNPDREGDALFVPDVTSSDGSTVRSVDGET 1890
            RR GGLV+WR+GSVMVVYRGSNY GPS   Q  D     LF+P+++S + S +RS +  T
Sbjct: 286  RRXGGLVLWRSGSVMVVYRGSNYKGPSQS-QTVDGXRSGLFIPEISSPETSEMRSGNEAT 344

Query: 1889 STLAKSELAVRNPDHSNTMTEEEAECNNLLDSLGPRFQEWWGTGILPVDADLLPEKVDGY 1710
            S   K+E A++ P+  + MTEEEAE ++LLD LGPRF EWWGTG+LPVDADLLP+ + GY
Sbjct: 345  SGPDKTEQALKIPERVHNMTEEEAEFHSLLDDLGPRFVEWWGTGVLPVDADLLPKTIPGY 404

Query: 1709 MTPFRLLPTGMRSRLTNAEMTDLRKLARSLPCHFALGRNRNHQGLAVAILKLWDKSLVAK 1530
             TPFRLLPTGMRSRLTNAE T LRKLA+SLPCHFALGRNRNHQGLA+AI+KLW+KS VAK
Sbjct: 405  KTPFRLLPTGMRSRLTNAEXTTLRKLAKSLPCHFALGRNRNHQGLALAIIKLWEKSSVAK 464

Query: 1529 IAVKRGIQNTNNKIMAEELKNLTGGTLLLRNKYYIVIYRGKDFLPPTVAAALAEREECAK 1350
            IAVKRGIQNTNNK+MAEE+KNLTGG LLLRNKYYIVIYRGKDF+P +VAAAL+ER+E  K
Sbjct: 465  IAVKRGIQNTNNKLMAEEIKNLTGGVLLLRNKYYIVIYRGKDFVPTSVAAALSERQELTK 524

Query: 1349 QIQDVEEKVRSKTLEAIPSGETEVQAPAGTLAEFYEAQSRWGREVSAEEREKMVEEASKA 1170
            Q+QDVEEKVR K ++A  SG  E QA AGTLAEFYEAQ+RWGRE+SAEEREKM+EE S+A
Sbjct: 525  QVQDVEEKVRIKAIDAASSGAVEGQALAGTLAEFYEAQARWGREISAEEREKMIEEDSRA 584

Query: 1169 KHARLVKRVEHKLAVAQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLR 990
            K+A+LV+R+EHKL VAQAKKLRAE+LL+KIE+ M+P+GPDYDQETITDEER MFRRVGLR
Sbjct: 585  KNAKLVRRIEHKLGVAQAKKLRAEKLLSKIESLMLPAGPDYDQETITDEERVMFRRVGLR 644

Query: 989  MKAFLPVGIRGVFDGVIENMHLHWKYRELVKLITKQKTLAFVEDTSRLLEYESGGILVAI 810
            MKA+LP+GIRGVFDGV+ENMHLHWK+RELVKLI+KQKTLAFVEDT+RLLEYESGGILVAI
Sbjct: 645  MKAYLPLGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESGGILVAI 704

Query: 809  ERVPKGFTLIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHITDLENTIEQ 630
            ERVPKG+ LI+YRGKNYRRPI+LRPRNLLTKAKALKRSVAMQRHEALSQHI++LE  IEQ
Sbjct: 705  ERVPKGYALIYYRGKNYRRPITLRPRNLLTKAKALKRSVAMQRHEALSQHISELEKNIEQ 764

Query: 629  MKKEIGVSQYAEDGNIKSSED-KQFDNVSDFPQ 534
            MK ++G+S+   D +  SS D +Q    S+  Q
Sbjct: 765  MKSQVGISEDDVDDSSWSSRDPEQIHRASELVQ 797


>ref|XP_008374754.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Malus domestica]
          Length = 827

 Score =  985 bits (2546), Expect = 0.0
 Identities = 530/803 (66%), Positives = 633/803 (78%), Gaps = 13/803 (1%)
 Frame = -2

Query: 2930 MAFATSKLTELPFRNSLTVTLASHAPPHNLLLFSSFPRKSTSFQIIKPLSS-LRTNQNPK 2754
            MAF T+K++E+P RNSL +T  SH+P      FS  P+ S  F+I+K  SS +RT ++  
Sbjct: 1    MAFTTAKISEMPLRNSLPLT--SHSPSS----FSLAPKPS--FRIVKTFSSSVRTTEHGG 52

Query: 2753 TNHRQFPKPRS-PSSSAPWLNKW---SRPK--PSPPVADNVTKPDGRNQFDREQTTDSEP 2592
              + + P+ +S P+S APWLNKW   S P   P   V + V +  GR Q  +  +T    
Sbjct: 53   NPNAKPPQHKSRPASPAPWLNKWPNRSSPAELPRQKVNEKVNESQGREQDGKADSTR--- 109

Query: 2591 LYTDNDDKGRNAIERIVLRLRNLGLGTXXXXXXXXXDVHG-----SVTGEERLEDLLXXX 2427
             Y D + KG++AIERIV RLRNL LG+          + G     + +GEE+L DLL   
Sbjct: 110  -YFDKN-KGQSAIERIVFRLRNLRLGSDDEEEDDGIGLDGQDSVPAASGEEKLGDLLQRE 167

Query: 2426 XX-PNTILKEEGEEDEDSLLPWXXXXXXXXXXXEKAAGEMRKKRTVKAPTLADLTIEDEE 2250
               P+ +L+EE   DE +L PW           E+  G   +KR  KAP+LA+LTIEDEE
Sbjct: 168  WVRPDYVLEEEKSADEVAL-PWEKEEEEEVNDKEEVKG--LRKRRGKAPSLAELTIEDEE 224

Query: 2249 LRRLRRNGMYLRERINVPKAGLTQAVMQKIHDKWRKDELVRLKFHEVLATDMKTAHEIVE 2070
            L+RLRR GM LRERI+VPKAG+TQAV++KIHD WRK ELVRLKFHEVLA DMKTAHEIVE
Sbjct: 225  LKRLRRMGMVLRERISVPKAGITQAVLEKIHDTWRKTELVRLKFHEVLALDMKTAHEIVE 284

Query: 2069 RRTGGLVIWRAGSVMVVYRGSNYTGPSSKPQNPDREGDALFVPDVTSSDGSTVRSVDGET 1890
            RRTGGLV+WR+GSVMVVYRGSNY GPS   Q  D E   LF+PDV+S++ S +RS +  T
Sbjct: 285  RRTGGLVLWRSGSVMVVYRGSNYKGPSQS-QTVDGERGGLFIPDVSSAETSVMRSGNDAT 343

Query: 1889 STLAKSELAVRNPDHSNTMTEEEAECNNLLDSLGPRFQEWWGTGILPVDADLLPEKVDGY 1710
            S   K+E A++ P+  + MTEEEAE ++LLD LGPRF+EWWGTG+LPVDADLLP+ + GY
Sbjct: 344  SGPDKTEQALKIPERVHNMTEEEAEFHSLLDDLGPRFEEWWGTGVLPVDADLLPKTIPGY 403

Query: 1709 MTPFRLLPTGMRSRLTNAEMTDLRKLARSLPCHFALGRNRNHQGLAVAILKLWDKSLVAK 1530
             TPFRLLPTGMRSRLTNAEMT LRKLA+SLPCHFALGRNRNHQGLA+AI+KLW+KS VAK
Sbjct: 404  KTPFRLLPTGMRSRLTNAEMTTLRKLAKSLPCHFALGRNRNHQGLALAIIKLWEKSSVAK 463

Query: 1529 IAVKRGIQNTNNKIMAEELKNLTGGTLLLRNKYYIVIYRGKDFLPPTVAAALAEREECAK 1350
            IAVKRGIQNTNNK+MAEE+KNLTGG LLLRNKYYIVIYRGKDFLP +VAAALAER+E  K
Sbjct: 464  IAVKRGIQNTNNKLMAEEIKNLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALAERQELTK 523

Query: 1349 QIQDVEEKVRSKTLEAIPSGETEVQAPAGTLAEFYEAQSRWGREVSAEEREKMVEEASKA 1170
            Q+QDVEEK+R K ++A  SG  E QA AGTLAEFYEAQ+RWGRE+SAEEREKM+EE S+A
Sbjct: 524  QVQDVEEKMRIKAIDAASSGAVEGQALAGTLAEFYEAQARWGREISAEEREKMIEEDSRA 583

Query: 1169 KHARLVKRVEHKLAVAQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLR 990
            K+A+LV+R+EHKL VAQAKKLRAE+LL+KIE+ M+P+GPDYDQETITDEER MFRRVGLR
Sbjct: 584  KNAKLVRRIEHKLGVAQAKKLRAEKLLSKIESLMLPAGPDYDQETITDEERVMFRRVGLR 643

Query: 989  MKAFLPVGIRGVFDGVIENMHLHWKYRELVKLITKQKTLAFVEDTSRLLEYESGGILVAI 810
            MKA+LP+GIRGVFDGV+ENMHLHWK+RELVKLI+KQKTLAFVEDT+RLLEYESGGILVAI
Sbjct: 644  MKAYLPLGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESGGILVAI 703

Query: 809  ERVPKGFTLIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHITDLENTIEQ 630
            ERVPKG+ LI+YRGKNYRRPI+LRPRNLLTKAKALKRSVAMQRHEALSQHI++LE  IEQ
Sbjct: 704  ERVPKGYALIYYRGKNYRRPITLRPRNLLTKAKALKRSVAMQRHEALSQHISELEKNIEQ 763

Query: 629  MKKEIGVSQYAEDGNIKSSEDKQ 561
            MK ++G+S+   D +  SS D +
Sbjct: 764  MKSQVGISEDDVDESSWSSRDPE 786