BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zanthoxylum22_contig00006802
         (2290 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citr...   815   0.0  
gb|KDO79960.1| hypothetical protein CISIN_1g009449mg [Citrus sin...   815   0.0  
ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-...   811   0.0  
gb|KDO79961.1| hypothetical protein CISIN_1g009449mg [Citrus sin...   655   0.0  
ref|XP_006450764.1| hypothetical protein CICLE_v10007968mg [Citr...   653   0.0  
gb|KDO79962.1| hypothetical protein CISIN_1g009449mg [Citrus sin...   653   0.0  
gb|AKC88685.1| sigma factor [Francoa sonchifolia]                     572   e-160
ref|XP_012077339.1| PREDICTED: RNA polymerase sigma factor sigC ...   562   e-157
gb|KDP34138.1| hypothetical protein JCGZ_07709 [Jatropha curcas]      562   e-157
ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prun...   558   e-155
ref|XP_008220144.1| PREDICTED: RNA polymerase sigma factor sigC-...   549   e-153
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor sigC ...   547   e-152
ref|XP_009361495.1| PREDICTED: RNA polymerase sigma factor sigC-...   542   e-151
ref|XP_006450758.1| hypothetical protein CICLE_v10007968mg [Citr...   542   e-151
ref|XP_006450757.1| hypothetical protein CICLE_v10007968mg [Citr...   542   e-151
gb|KDO79965.1| hypothetical protein CISIN_1g009449mg [Citrus sin...   542   e-151
gb|KDO79964.1| hypothetical protein CISIN_1g009449mg [Citrus sin...   542   e-151
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...   541   e-151
ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [The...   541   e-150
gb|AKC88690.1| sigma factor [Melianthus villosus]                     538   e-149

>ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
            gi|557553989|gb|ESR64003.1| hypothetical protein
            CICLE_v10007968mg [Citrus clementina]
          Length = 534

 Score =  815 bits (2105), Expect = 0.0
 Identities = 427/533 (80%), Positives = 462/533 (86%), Gaps = 9/533 (1%)
 Frame = -1

Query: 2131 MGFRLNLKWVSPIQSHFFSTSPYRLS---VRGRDGSFNSARLSFLSIISEDSASHFQDSV 1961
            MGFRLNLKWVSP+QSHFF+TS  RLS   VRGR+GSFNSARLSFLS ISEDSAS+FQD V
Sbjct: 3    MGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQDPV 62

Query: 1960 KAYTCSFVNSQTIENDYSETEEIRQKSASCKGQDAGSTSGFRLLMENLYVLESTFADSDA 1781
            KAYTCSFVN+QT+ENDYSETEEIRQKS SC GQDA S S FRLLMENL VLESTFADSDA
Sbjct: 63   KAYTCSFVNTQTVENDYSETEEIRQKSTSCIGQDASSRSDFRLLMENLDVLESTFADSDA 122

Query: 1780 XXXXXXXXXXXXXXXXXXLFNNCLSRTVKTSDVFDLSDIPIDHIEEKKMNDSADDLRGKV 1601
                              LFN+ LSR VKTS+V DLSD+   H EE+KMNDS D   GK+
Sbjct: 123  LRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDV---HTEEQKMNDSRDYHMGKI 179

Query: 1600 VIRSKRKGKRKLRTARVSEESNETSLLSVHLEALQEGS------SAKRALNPRSRRLMIA 1439
            ++ SKRKGKRKL+TARVSEES ETSLLS+  EALQEG       S +RALN R RRLMIA
Sbjct: 180  LVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSPERALNSRGRRLMIA 239

Query: 1438 RNEAEMSKGVQVVANLERIKTTLEKESGQVASLKFWAEAAGVSEKVLKQHLAFGWHCRAE 1259
            RNEAEMSKGVQVVANLERIKTTLEKESG+ ASL  WA+AAGVSE+VLKQHLAFGW+CR E
Sbjct: 240  RNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREE 299

Query: 1258 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYRFSTYVQFWIRKS 1079
            LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGY+FSTYVQ+WIRKS
Sbjct: 300  LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359

Query: 1078 MSKMVERHARGIKIPCKLNRAISKIHKARKTLNNGRGKNPEDIEIAKYTGLSLAEIRSAS 899
            +SKMV RHARGIKIPCKLNR ISKI KARK L N  GK PEDIEIAKYTGLSLAEIRSAS
Sbjct: 360  ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419

Query: 898  ECLRIVGSIDQKMGDCLKAKYLEFSPDMSIKSPKEIVMRQHMKKDIFQILENLDSRERQV 719
            ECLRIVGSIDQK+GDCL AKYLEF+PD S+KSPKEIVMRQHMKKD+F+ILE+LDSRERQV
Sbjct: 420  ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479

Query: 718  LMLRYGLKDYRPKSLEEIGRLFHVSKEWIRKLEKKAMTKLRNNETCRDLSHYL 560
            L+LRYGL D+RPKSLEEIG+LFHVSKEWIRKLEKKAMTKLR++ETCRDLSH+L
Sbjct: 480  LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532


>gb|KDO79960.1| hypothetical protein CISIN_1g009449mg [Citrus sinensis]
          Length = 534

 Score =  815 bits (2104), Expect = 0.0
 Identities = 427/533 (80%), Positives = 462/533 (86%), Gaps = 9/533 (1%)
 Frame = -1

Query: 2131 MGFRLNLKWVSPIQSHFFSTSPYRLS---VRGRDGSFNSARLSFLSIISEDSASHFQDSV 1961
            MGFRLNLKWVSP+QSHFF+TS  RLS   VRGR+GSFNSARLSFLS ISEDSAS+FQD V
Sbjct: 3    MGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQDPV 62

Query: 1960 KAYTCSFVNSQTIENDYSETEEIRQKSASCKGQDAGSTSGFRLLMENLYVLESTFADSDA 1781
            KAYTCSFVN+QT+ENDYSETEEIRQKS SC GQDA S S FRLLMENL VLESTFADSDA
Sbjct: 63   KAYTCSFVNTQTVENDYSETEEIRQKSTSCIGQDASSRSDFRLLMENLDVLESTFADSDA 122

Query: 1780 XXXXXXXXXXXXXXXXXXLFNNCLSRTVKTSDVFDLSDIPIDHIEEKKMNDSADDLRGKV 1601
                              LFN+ LSR VKTS+V DLSD+   H EE+KMNDS D   GK+
Sbjct: 123  LRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDV---HTEEQKMNDSRDYHMGKI 179

Query: 1600 VIRSKRKGKRKLRTARVSEESNETSLLSVHLEALQEGS------SAKRALNPRSRRLMIA 1439
            ++ SKRKGKRKL+TARVSEES ETSLLS+  EALQEG       SA+RALN R RRL IA
Sbjct: 180  LVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIA 239

Query: 1438 RNEAEMSKGVQVVANLERIKTTLEKESGQVASLKFWAEAAGVSEKVLKQHLAFGWHCRAE 1259
            RNEAEMSKGVQVVANLERIKTTLEKESG+ ASL  WA+AAGVSE+VLKQHLAFGW+CR E
Sbjct: 240  RNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREE 299

Query: 1258 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYRFSTYVQFWIRKS 1079
            LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGY+FSTYVQ+WIRKS
Sbjct: 300  LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359

Query: 1078 MSKMVERHARGIKIPCKLNRAISKIHKARKTLNNGRGKNPEDIEIAKYTGLSLAEIRSAS 899
            +SKMV RHARGIKIPCKLNR ISKI KARK L N  GK PEDIEIAKYTGLSLAEIRSAS
Sbjct: 360  ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419

Query: 898  ECLRIVGSIDQKMGDCLKAKYLEFSPDMSIKSPKEIVMRQHMKKDIFQILENLDSRERQV 719
            ECLRIVGSIDQK+GDCL AKYLEF+PD S+KSPKEIVMRQHMKKD+F+ILE+LDSRERQV
Sbjct: 420  ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479

Query: 718  LMLRYGLKDYRPKSLEEIGRLFHVSKEWIRKLEKKAMTKLRNNETCRDLSHYL 560
            L+LRYGL D+RPKSLEEIG+LFHVSKEWIRKLEKKAMTKLR++ETCRDLSH+L
Sbjct: 480  LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532


>ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-like [Citrus sinensis]
          Length = 534

 Score =  811 bits (2094), Expect = 0.0
 Identities = 425/533 (79%), Positives = 461/533 (86%), Gaps = 9/533 (1%)
 Frame = -1

Query: 2131 MGFRLNLKWVSPIQSHFFSTSPYRLS---VRGRDGSFNSARLSFLSIISEDSASHFQDSV 1961
            MGFRLNLKWVSP+QSHFF+TS  RLS   VRGR+GSFNSARLSFLS ISEDSAS+FQD V
Sbjct: 3    MGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQDPV 62

Query: 1960 KAYTCSFVNSQTIENDYSETEEIRQKSASCKGQDAGSTSGFRLLMENLYVLESTFADSDA 1781
            KAYTCSFVN+QT+ENDYSETEEIRQKS SC GQDA S S FRLLMENL VLESTFADSDA
Sbjct: 63   KAYTCSFVNTQTVENDYSETEEIRQKSTSCIGQDASSRSDFRLLMENLDVLESTFADSDA 122

Query: 1780 XXXXXXXXXXXXXXXXXXLFNNCLSRTVKTSDVFDLSDIPIDHIEEKKMNDSADDLRGKV 1601
                              LFN+ LSR VKTS+V DLSD+   H EE+KM+DS D   GK+
Sbjct: 123  LRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDV---HTEEQKMDDSRDYHMGKI 179

Query: 1600 VIRSKRKGKRKLRTARVSEESNETSLLSVHLEALQEGS------SAKRALNPRSRRLMIA 1439
            ++ SKRKGKRKL+TARVSEES ET LLS+  EALQEG       SA+RALN R RRLMIA
Sbjct: 180  LVPSKRKGKRKLKTARVSEESIETYLLSLPSEALQEGLKQPTIFSAERALNSRGRRLMIA 239

Query: 1438 RNEAEMSKGVQVVANLERIKTTLEKESGQVASLKFWAEAAGVSEKVLKQHLAFGWHCRAE 1259
            RNEAEMSKGVQVVANLERIKTTLEKESG+ A L  WA+AAGVSE+VLKQHLAFGW+CR E
Sbjct: 240  RNEAEMSKGVQVVANLERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAFGWYCREE 299

Query: 1258 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYRFSTYVQFWIRKS 1079
            LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGY+FSTYVQ+WIRKS
Sbjct: 300  LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359

Query: 1078 MSKMVERHARGIKIPCKLNRAISKIHKARKTLNNGRGKNPEDIEIAKYTGLSLAEIRSAS 899
            +SKMV RHARGIKIPCKLNR ISKI KARK L N  GK PEDIEIAKYTGLSLAEIRSAS
Sbjct: 360  ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419

Query: 898  ECLRIVGSIDQKMGDCLKAKYLEFSPDMSIKSPKEIVMRQHMKKDIFQILENLDSRERQV 719
            ECLRIVGSIDQK+GDCL AKYLEF+PD S+KSPKEIVMRQHMKKD+F+ILE+LDSRERQV
Sbjct: 420  ECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQV 479

Query: 718  LMLRYGLKDYRPKSLEEIGRLFHVSKEWIRKLEKKAMTKLRNNETCRDLSHYL 560
            L+LRYGL D+RPKSLEEIG+LFHVSKEWIRKLEKKAMTKLR++ETCRDLSH+L
Sbjct: 480  LVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532


>gb|KDO79961.1| hypothetical protein CISIN_1g009449mg [Citrus sinensis]
          Length = 459

 Score =  655 bits (1690), Expect = 0.0
 Identities = 350/446 (78%), Positives = 374/446 (83%), Gaps = 9/446 (2%)
 Frame = -1

Query: 2131 MGFRLNLKWVSPIQSHFFSTSPYRLS---VRGRDGSFNSARLSFLSIISEDSASHFQDSV 1961
            MGFRLNLKWVSP+QSHFF+TS  RLS   VRGR+GSFNSARLSFLS ISEDSAS+FQD V
Sbjct: 3    MGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQDPV 62

Query: 1960 KAYTCSFVNSQTIENDYSETEEIRQKSASCKGQDAGSTSGFRLLMENLYVLESTFADSDA 1781
            KAYTCSFVN+QT+ENDYSETEEIRQKS SC GQDA S S FRLLMENL VLESTFADSDA
Sbjct: 63   KAYTCSFVNTQTVENDYSETEEIRQKSTSCIGQDASSRSDFRLLMENLDVLESTFADSDA 122

Query: 1780 XXXXXXXXXXXXXXXXXXLFNNCLSRTVKTSDVFDLSDIPIDHIEEKKMNDSADDLRGKV 1601
                              LFN+ LSR VKTS+V DLSD+   H EE+KMNDS D   GK+
Sbjct: 123  LRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDV---HTEEQKMNDSRDYHMGKI 179

Query: 1600 VIRSKRKGKRKLRTARVSEESNETSLLSVHLEALQEGS------SAKRALNPRSRRLMIA 1439
            ++ SKRKGKRKL+TARVSEES ETSLLS+  EALQEG       SA+RALN R RRL IA
Sbjct: 180  LVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIA 239

Query: 1438 RNEAEMSKGVQVVANLERIKTTLEKESGQVASLKFWAEAAGVSEKVLKQHLAFGWHCRAE 1259
            RNEAEMSKGVQVVANLERIKTTLEKESG+ ASL  WA+AAGVSE+VLKQHLAFGW+CR E
Sbjct: 240  RNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREE 299

Query: 1258 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYRFSTYVQFWIRKS 1079
            LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGY+FSTYVQ+WIRKS
Sbjct: 300  LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359

Query: 1078 MSKMVERHARGIKIPCKLNRAISKIHKARKTLNNGRGKNPEDIEIAKYTGLSLAEIRSAS 899
            +SKMV RHARGIKIPCKLNR ISKI KARK L N  GK PEDIEIAKYTGLSLAEIRSAS
Sbjct: 360  ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419

Query: 898  ECLRIVGSIDQKMGDCLKAKYLEFSP 821
            ECLRIVGSIDQK+GDCL AKYL   P
Sbjct: 420  ECLRIVGSIDQKIGDCLNAKYLNIPP 445


>ref|XP_006450764.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
            gi|557553990|gb|ESR64004.1| hypothetical protein
            CICLE_v10007968mg [Citrus clementina]
          Length = 442

 Score =  653 bits (1685), Expect = 0.0
 Identities = 349/442 (78%), Positives = 373/442 (84%), Gaps = 9/442 (2%)
 Frame = -1

Query: 2131 MGFRLNLKWVSPIQSHFFSTSPYRLS---VRGRDGSFNSARLSFLSIISEDSASHFQDSV 1961
            MGFRLNLKWVSP+QSHFF+TS  RLS   VRGR+GSFNSARLSFLS ISEDSAS+FQD V
Sbjct: 3    MGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQDPV 62

Query: 1960 KAYTCSFVNSQTIENDYSETEEIRQKSASCKGQDAGSTSGFRLLMENLYVLESTFADSDA 1781
            KAYTCSFVN+QT+ENDYSETEEIRQKS SC GQDA S S FRLLMENL VLESTFADSDA
Sbjct: 63   KAYTCSFVNTQTVENDYSETEEIRQKSTSCIGQDASSRSDFRLLMENLDVLESTFADSDA 122

Query: 1780 XXXXXXXXXXXXXXXXXXLFNNCLSRTVKTSDVFDLSDIPIDHIEEKKMNDSADDLRGKV 1601
                              LFN+ LSR VKTS+V DLSD+   H EE+KMNDS D   GK+
Sbjct: 123  LRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDV---HTEEQKMNDSRDYHMGKI 179

Query: 1600 VIRSKRKGKRKLRTARVSEESNETSLLSVHLEALQEGS------SAKRALNPRSRRLMIA 1439
            ++ SKRKGKRKL+TARVSEES ETSLLS+  EALQEG       S +RALN R RRLMIA
Sbjct: 180  LVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSPERALNSRGRRLMIA 239

Query: 1438 RNEAEMSKGVQVVANLERIKTTLEKESGQVASLKFWAEAAGVSEKVLKQHLAFGWHCRAE 1259
            RNEAEMSKGVQVVANLERIKTTLEKESG+ ASL  WA+AAGVSE+VLKQHLAFGW+CR E
Sbjct: 240  RNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREE 299

Query: 1258 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYRFSTYVQFWIRKS 1079
            LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGY+FSTYVQ+WIRKS
Sbjct: 300  LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359

Query: 1078 MSKMVERHARGIKIPCKLNRAISKIHKARKTLNNGRGKNPEDIEIAKYTGLSLAEIRSAS 899
            +SKMV RHARGIKIPCKLNR ISKI KARK L N  GK PEDIEIAKYTGLSLAEIRSAS
Sbjct: 360  ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419

Query: 898  ECLRIVGSIDQKMGDCLKAKYL 833
            ECLRIVGSIDQK+GDCL AKYL
Sbjct: 420  ECLRIVGSIDQKIGDCLNAKYL 441


>gb|KDO79962.1| hypothetical protein CISIN_1g009449mg [Citrus sinensis]
          Length = 442

 Score =  653 bits (1684), Expect = 0.0
 Identities = 349/442 (78%), Positives = 373/442 (84%), Gaps = 9/442 (2%)
 Frame = -1

Query: 2131 MGFRLNLKWVSPIQSHFFSTSPYRLS---VRGRDGSFNSARLSFLSIISEDSASHFQDSV 1961
            MGFRLNLKWVSP+QSHFF+TS  RLS   VRGR+GSFNSARLSFLS ISEDSAS+FQD V
Sbjct: 3    MGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQDPV 62

Query: 1960 KAYTCSFVNSQTIENDYSETEEIRQKSASCKGQDAGSTSGFRLLMENLYVLESTFADSDA 1781
            KAYTCSFVN+QT+ENDYSETEEIRQKS SC GQDA S S FRLLMENL VLESTFADSDA
Sbjct: 63   KAYTCSFVNTQTVENDYSETEEIRQKSTSCIGQDASSRSDFRLLMENLDVLESTFADSDA 122

Query: 1780 XXXXXXXXXXXXXXXXXXLFNNCLSRTVKTSDVFDLSDIPIDHIEEKKMNDSADDLRGKV 1601
                              LFN+ LSR VKTS+V DLSD+   H EE+KMNDS D   GK+
Sbjct: 123  LRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDV---HTEEQKMNDSRDYHMGKI 179

Query: 1600 VIRSKRKGKRKLRTARVSEESNETSLLSVHLEALQEGS------SAKRALNPRSRRLMIA 1439
            ++ SKRKGKRKL+TARVSEES ETSLLS+  EALQEG       SA+RALN R RRL IA
Sbjct: 180  LVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIA 239

Query: 1438 RNEAEMSKGVQVVANLERIKTTLEKESGQVASLKFWAEAAGVSEKVLKQHLAFGWHCRAE 1259
            RNEAEMSKGVQVVANLERIKTTLEKESG+ ASL  WA+AAGVSE+VLKQHLAFGW+CR E
Sbjct: 240  RNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREE 299

Query: 1258 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYRFSTYVQFWIRKS 1079
            LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGY+FSTYVQ+WIRKS
Sbjct: 300  LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359

Query: 1078 MSKMVERHARGIKIPCKLNRAISKIHKARKTLNNGRGKNPEDIEIAKYTGLSLAEIRSAS 899
            +SKMV RHARGIKIPCKLNR ISKI KARK L N  GK PEDIEIAKYTGLSLAEIRSAS
Sbjct: 360  ISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSAS 419

Query: 898  ECLRIVGSIDQKMGDCLKAKYL 833
            ECLRIVGSIDQK+GDCL AKYL
Sbjct: 420  ECLRIVGSIDQKIGDCLNAKYL 441


>gb|AKC88685.1| sigma factor [Francoa sonchifolia]
          Length = 540

 Score =  572 bits (1475), Expect = e-160
 Identities = 309/543 (56%), Positives = 388/543 (71%), Gaps = 16/543 (2%)
 Frame = -1

Query: 2131 MGFRLNLKWVSPIQSHFFSTSPYRL---SVRGRDGSFNSARLSFLSIISEDSASHFQDSV 1961
            MGFRLNLKW  PIQSH    SP RL   SVRGR+ S NSARLSFLSIISE+  +  +  V
Sbjct: 1    MGFRLNLKWGFPIQSHSLPNSPSRLCSSSVRGREASINSARLSFLSIISEEGETLRRVLV 60

Query: 1960 KAYTCSFVNSQTIEN-------DYSETEEIRQKSASCKGQDAGSTSGFRLLMENLYVLES 1802
            KAY CSF   Q +E        D + TEE   KS S    +A   S FRLL++NL VLE 
Sbjct: 61   KAYACSFAARQMLEKENLHSMIDDNPTEE--GKSTSQMSVEARKASHFRLLVQNLDVLEK 118

Query: 1801 TFADSDAXXXXXXXXXXXXXXXXXXLFNNCLSRTVKTSDVFDLSDIPIDHIEEKKMNDSA 1622
            TFADS                    LF+ CLS+T++ S+  DLS++PI+H+EE+K   + 
Sbjct: 119  TFADSSVLRLESDILLQLERLGARNLFDTCLSKTLEDSN--DLSNVPIEHMEEQKTVIAM 176

Query: 1621 DDLRGKVVIRSKRKGKRKLRTARVSEESNETSLLSVHLEALQEG------SSAKRALNPR 1460
            DD  GK+ + S++K +RK + AR SE +++ S + +  +  ++G      SS+KR  N R
Sbjct: 177  DDQIGKIFVCSRKKEERKSKRARASENASKISSMPLRSKTARKGYQQPAHSSSKRGSNSR 236

Query: 1459 SRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGQVASLKFWAEAAGVSEKVLKQHLAF 1280
             RRLMIARNEAEMS+GV+V+ +LERI+TTLEKE+G+V SL  WAEAAG+ EKVL Q L +
Sbjct: 237  GRRLMIARNEAEMSRGVKVIQDLERIRTTLEKETGRVVSLSTWAEAAGIDEKVLNQDLRY 296

Query: 1279 GWHCRAELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYRFSTYV 1100
            GW+CR EL++STR LVL+LARNYRGLGI   DLLQAG +GVLQGAERFDHTRGY+ STYV
Sbjct: 297  GWYCRDELLRSTRSLVLYLARNYRGLGIASEDLLQAGKLGVLQGAERFDHTRGYKLSTYV 356

Query: 1099 QFWIRKSMSKMVERHARGIKIPCKLNRAISKIHKARKTLNNGRGKNPEDIEIAKYTGLSL 920
            Q+WIRKSMS+MV +HARG++IP  L+R I+++ KARK L+N  GK P+D EIAK TG+SL
Sbjct: 357  QYWIRKSMSRMVAQHARGVQIPYTLSRVINRVQKARKALSNSHGKYPDDAEIAKATGISL 416

Query: 919  AEIRSASECLRIVGSIDQKMGDCLKAKYLEFSPDMSIKSPKEIVMRQHMKKDIFQILENL 740
             +IRSA +CLR+VGSIDQKM  C   KY+E +PD+SI  P+E V+RQHM KD++  L+ L
Sbjct: 417  EKIRSAKKCLRVVGSIDQKMEGCFGVKYMELTPDISIPCPEETVIRQHMIKDLYNHLQGL 476

Query: 739  DSRERQVLMLRYGLKDYRPKSLEEIGRLFHVSKEWIRKLEKKAMTKLRNNETCRDLSHYL 560
            D RE QVL+LRYGL ++ PKSLEEIGRLF VSKEWIR++EKKA+T LR  ET R L HYL
Sbjct: 477  DQREMQVLILRYGLNNHHPKSLEEIGRLFCVSKEWIRRVEKKALTNLRKEETRRSLIHYL 536

Query: 559  DCS 551
              S
Sbjct: 537  TVS 539


>ref|XP_012077339.1| PREDICTED: RNA polymerase sigma factor sigC [Jatropha curcas]
          Length = 606

 Score =  562 bits (1448), Expect(2) = e-157
 Identities = 302/561 (53%), Positives = 392/561 (69%), Gaps = 36/561 (6%)
 Frame = -1

Query: 2131 MGFRLNLKWVSPIQSHFFSTSPYRLS-----VRGRDGSFNSARLSFLSIISEDSASHFQD 1967
            +GFRL+LK   P  S F   SP RLS     V+GR+GS N +RLSFLS+ISE+  +  +D
Sbjct: 45   LGFRLSLKLGFPFHSQFHVNSPSRLSSSPSAVKGREGSINISRLSFLSVISEEGDNLHRD 104

Query: 1966 SVKAYTCSFVNSQTIENDYSETEE-----------------------IRQKSASCKGQDA 1856
             +K    S    QT+EN++S+ EE                       I++          
Sbjct: 105  HLKTNAYSSSGMQTLENEHSQVEEAKISVGKRSLSGLNDTIDDAQVFIKEDDFVPPSSSK 164

Query: 1855 GSTSGFRLLMENLYVLESTFADSDAXXXXXXXXXXXXXXXXXXLFNNCLSRT--VKTSDV 1682
              TS F LL+ENL +LE +FADSD                   LFN CL+RT  V+T++V
Sbjct: 165  DRTSNFSLLLENLNILEESFADSDVLKLERDILLQLGKLGALKLFNTCLTRTLEVQTANV 224

Query: 1681 FDLSDIPIDHIEEKKMNDSADDLRGKVVIRSKRKGKRKLRTARVS-EESNETSLLSVHLE 1505
             D SD+P ++I+E K + +++    K+++ + +K +RK R  R S +  ++     + L+
Sbjct: 225  LDFSDLPTENIQECKRDGTSNGNVYKIIVCTGKKEERKSRRERASLKNGHKVPCFPLPLK 284

Query: 1504 ALQEG-----SSAKRALNPRSRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGQVASL 1340
            ++Q G     S  K+  N +SRRLMIARNEAEMS+GV+V+ANLE+I+TTLE+E+G+  SL
Sbjct: 285  SIQNGRGKATSFDKKTSNSKSRRLMIARNEAEMSRGVKVLANLEKIRTTLEQETGRAVSL 344

Query: 1339 KFWAEAAGVSEKVLKQHLAFGWHCRAELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 1160
              WAEAAG+  KVL+Q L FGW+CR EL++STR LVLFLARNYRG+GI   DLLQAGN+G
Sbjct: 345  SCWAEAAGLDMKVLQQQLHFGWYCRDELVRSTRSLVLFLARNYRGMGIALEDLLQAGNMG 404

Query: 1159 VLQGAERFDHTRGYRFSTYVQFWIRKSMSKMVERHARGIKIPCKLNRAISKIHKARKTLN 980
            VLQGAERFD  RGYRFSTYVQ+WIRKSMSK+V RHARGI+IPC L+RAI++I KARK L+
Sbjct: 405  VLQGAERFDDARGYRFSTYVQYWIRKSMSKIVSRHARGIQIPCTLSRAINQIQKARKNLS 464

Query: 979  NGRGKNPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKMGDCLKAKYLEFSPDMSIKSP 800
               GK P+D +IA++TGLSLA+I SAS CLR+VGSIDQKMGDC  AKYLEF  D +IKSP
Sbjct: 465  ASHGKYPDDEDIAEFTGLSLAKIESASRCLRVVGSIDQKMGDCFNAKYLEFIHDTTIKSP 524

Query: 799  KEIVMRQHMKKDIFQILENLDSRERQVLMLRYGLKDYRPKSLEEIGRLFHVSKEWIRKLE 620
            +E VMRQHM KD+  +L  LD+RERQVL+LRYGLKD++PKSLEEIGR+FHVSKEW+R+LE
Sbjct: 525  EEAVMRQHMIKDMHDLLRGLDTRERQVLILRYGLKDHQPKSLEEIGRVFHVSKEWVRRLE 584

Query: 619  KKAMTKLRNNETCRDLSHYLD 557
            KK MT+LRN ETCR+L +Y++
Sbjct: 585  KKVMTRLRNEETCRNLRYYVN 605



 Score = 25.0 bits (53), Expect(2) = e-157
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 2289 NQWWRCDKTNLCNCVHLLSLNK 2224
            N+WWR D T       LLS+ K
Sbjct: 3    NRWWRADNTFTATISFLLSIFK 24


>gb|KDP34138.1| hypothetical protein JCGZ_07709 [Jatropha curcas]
          Length = 564

 Score =  562 bits (1448), Expect = e-157
 Identities = 302/561 (53%), Positives = 392/561 (69%), Gaps = 36/561 (6%)
 Frame = -1

Query: 2131 MGFRLNLKWVSPIQSHFFSTSPYRLS-----VRGRDGSFNSARLSFLSIISEDSASHFQD 1967
            +GFRL+LK   P  S F   SP RLS     V+GR+GS N +RLSFLS+ISE+  +  +D
Sbjct: 3    LGFRLSLKLGFPFHSQFHVNSPSRLSSSPSAVKGREGSINISRLSFLSVISEEGDNLHRD 62

Query: 1966 SVKAYTCSFVNSQTIENDYSETEE-----------------------IRQKSASCKGQDA 1856
             +K    S    QT+EN++S+ EE                       I++          
Sbjct: 63   HLKTNAYSSSGMQTLENEHSQVEEAKISVGKRSLSGLNDTIDDAQVFIKEDDFVPPSSSK 122

Query: 1855 GSTSGFRLLMENLYVLESTFADSDAXXXXXXXXXXXXXXXXXXLFNNCLSRT--VKTSDV 1682
              TS F LL+ENL +LE +FADSD                   LFN CL+RT  V+T++V
Sbjct: 123  DRTSNFSLLLENLNILEESFADSDVLKLERDILLQLGKLGALKLFNTCLTRTLEVQTANV 182

Query: 1681 FDLSDIPIDHIEEKKMNDSADDLRGKVVIRSKRKGKRKLRTARVS-EESNETSLLSVHLE 1505
             D SD+P ++I+E K + +++    K+++ + +K +RK R  R S +  ++     + L+
Sbjct: 183  LDFSDLPTENIQECKRDGTSNGNVYKIIVCTGKKEERKSRRERASLKNGHKVPCFPLPLK 242

Query: 1504 ALQEG-----SSAKRALNPRSRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGQVASL 1340
            ++Q G     S  K+  N +SRRLMIARNEAEMS+GV+V+ANLE+I+TTLE+E+G+  SL
Sbjct: 243  SIQNGRGKATSFDKKTSNSKSRRLMIARNEAEMSRGVKVLANLEKIRTTLEQETGRAVSL 302

Query: 1339 KFWAEAAGVSEKVLKQHLAFGWHCRAELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 1160
              WAEAAG+  KVL+Q L FGW+CR EL++STR LVLFLARNYRG+GI   DLLQAGN+G
Sbjct: 303  SCWAEAAGLDMKVLQQQLHFGWYCRDELVRSTRSLVLFLARNYRGMGIALEDLLQAGNMG 362

Query: 1159 VLQGAERFDHTRGYRFSTYVQFWIRKSMSKMVERHARGIKIPCKLNRAISKIHKARKTLN 980
            VLQGAERFD  RGYRFSTYVQ+WIRKSMSK+V RHARGI+IPC L+RAI++I KARK L+
Sbjct: 363  VLQGAERFDDARGYRFSTYVQYWIRKSMSKIVSRHARGIQIPCTLSRAINQIQKARKNLS 422

Query: 979  NGRGKNPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKMGDCLKAKYLEFSPDMSIKSP 800
               GK P+D +IA++TGLSLA+I SAS CLR+VGSIDQKMGDC  AKYLEF  D +IKSP
Sbjct: 423  ASHGKYPDDEDIAEFTGLSLAKIESASRCLRVVGSIDQKMGDCFNAKYLEFIHDTTIKSP 482

Query: 799  KEIVMRQHMKKDIFQILENLDSRERQVLMLRYGLKDYRPKSLEEIGRLFHVSKEWIRKLE 620
            +E VMRQHM KD+  +L  LD+RERQVL+LRYGLKD++PKSLEEIGR+FHVSKEW+R+LE
Sbjct: 483  EEAVMRQHMIKDMHDLLRGLDTRERQVLILRYGLKDHQPKSLEEIGRVFHVSKEWVRRLE 542

Query: 619  KKAMTKLRNNETCRDLSHYLD 557
            KK MT+LRN ETCR+L +Y++
Sbjct: 543  KKVMTRLRNEETCRNLRYYVN 563


>ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica]
            gi|462419859|gb|EMJ24122.1| hypothetical protein
            PRUPE_ppa003696mg [Prunus persica]
          Length = 555

 Score =  558 bits (1437), Expect = e-155
 Identities = 309/554 (55%), Positives = 394/554 (71%), Gaps = 29/554 (5%)
 Frame = -1

Query: 2131 MGFRLNLKWVSPIQS-HFFSTSPYRLS---VRGRDGSFNSARLSFLSIISEDSASHFQDS 1964
            +GFRLNLK   P+ S H+ +TSP ++S   VRGR+GSFNSARLSFLS+ISE+  +  +D 
Sbjct: 3    LGFRLNLKCGFPVHSSHWQTTSPSKISSTSVRGREGSFNSARLSFLSVISEEGEASSKDP 62

Query: 1963 VKAYTCSFVNSQTIENDYSETEEIRQ-------------------KSASCKGQDAGSTSG 1841
            +K YT    + Q +E+  SE EE++                    K  S KG +A + S 
Sbjct: 63   LKVYTFPSASPQILEDGVSELEEVKTAFRRVPKSFSDNQMPVAEGKFISSKGLEACTASH 122

Query: 1840 FRLLMENLYVLESTFADSDAXXXXXXXXXXXXXXXXXXLFNNCLSRTVKTSDVFDLSDIP 1661
            F LL++NL VLE TFA SD                   LF+ CLSRT+KTS   DLSDIP
Sbjct: 123  FSLLLQNLNVLEETFATSDVLKLEKEILLQLARLGALKLFDICLSRTLKTSSFLDLSDIP 182

Query: 1660 IDHIEEKKMNDSADDLRGKVVIRSKRKGKRKLRTARVSEESNETSLLSVHLEALQEG--- 1490
               +EE KM    D+  G++++RS +K +R+ R  R S+ +  +S  S+  + + +G   
Sbjct: 183  TVPVEEGKMERKEDNNVGEIIVRSGKKEERRSRK-RTSDNAIVSSN-SLPPKTIWKGLKK 240

Query: 1489 ---SSAKRALNPRSRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGQVASLKFWAEAA 1319
               SS KRA N RSRRL I++NEAEMS GV+V+A+LERIK TLEKE+G+VA+L+ WAEAA
Sbjct: 241  PTLSSGKRASNYRSRRLTISKNEAEMSIGVKVIADLERIKETLEKETGKVATLRCWAEAA 300

Query: 1318 GVSEKVLKQHLAFGWHCRAELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 1139
            GV EKVL QHL FGW+C+ ELI+STR LVL+LARNYRGLG+   DL+QAGN+G+LQGAER
Sbjct: 301  GVHEKVLLQHLRFGWYCQDELIRSTRSLVLYLARNYRGLGVALDDLMQAGNLGLLQGAER 360

Query: 1138 FDHTRGYRFSTYVQFWIRKSMSKMVERHARGIKIPCKLNRAISKIHKARKTLNNGRGKNP 959
            FDH+RGYRFSTYVQ+WIRKSMS++V +HARG++IP  L++AI++I KARK   N   K P
Sbjct: 361  FDHSRGYRFSTYVQYWIRKSMSRLVAQHARGVQIPFTLSKAINQIQKARKANYNSHMKYP 420

Query: 958  EDIEIAKYTGLSLAEIRSASECLRIVGSIDQKMGDCLKAKYLEFSPDMSIKSPKEIVMRQ 779
            +D EIAK TGLSLA IRSAS CLR+VGS+D KM +     Y+EF+PD S+KSP+E VMRQ
Sbjct: 421  DDEEIAKITGLSLARIRSASTCLRVVGSVDHKMWESSDGTYMEFTPDTSLKSPEETVMRQ 480

Query: 778  HMKKDIFQILENLDSRERQVLMLRYGLKDYRPKSLEEIGRLFHVSKEWIRKLEKKAMTKL 599
            HMKKDI  +L+ L+ RERQVL+LRYGL +Y PKSLEEIGRLFHVSKEWIRK+EKKA+ KL
Sbjct: 481  HMKKDIHDLLKGLNLRERQVLVLRYGLNNYDPKSLEEIGRLFHVSKEWIRKIEKKALMKL 540

Query: 598  RNNETCRDLSHYLD 557
            R  E+ + LSHYL+
Sbjct: 541  RVEESHKYLSHYLN 554


>ref|XP_008220144.1| PREDICTED: RNA polymerase sigma factor sigC-like [Prunus mume]
          Length = 553

 Score =  549 bits (1415), Expect = e-153
 Identities = 304/552 (55%), Positives = 391/552 (70%), Gaps = 27/552 (4%)
 Frame = -1

Query: 2131 MGFRLNLKWVSPIQSHFF-STSPYRLS---VRGRDGSFNSARLSFLSIISEDSASHFQDS 1964
            +GFRLNLK   P+ S ++ +TSP +LS   VRGR+GSFNSARLSFLS+ISE+  +  +D 
Sbjct: 3    LGFRLNLKCGFPVHSSYWQTTSPSKLSSTSVRGREGSFNSARLSFLSVISEEGEASSKDP 62

Query: 1963 VKAYTCSFVNSQTIENDYSETEEI-----------------RQKSASCKGQDAGSTSGFR 1835
            +K YTC   + Q +E+  SE EE                    K  S KG +A + S F 
Sbjct: 63   LKVYTCPSASPQILEDGVSEMEEAAFRRVPKSISDNRMPVAEGKFISSKGLEACTASHFS 122

Query: 1834 LLMENLYVLESTFADSDAXXXXXXXXXXXXXXXXXXLFNNCLSRTVKTSDVFDLSDIPID 1655
            LL++NL VLE TFA S+                   LF+ CLSRT+KTS   DLSDIP  
Sbjct: 123  LLLQNLNVLEETFATSNVLKLEKEILLQLARLGALKLFDICLSRTLKTSSFLDLSDIPTV 182

Query: 1654 HIEEKKMNDSADDLRGKVVIRSKRKGKRKLRTARVSEESNETSLLSVHLEALQEG----- 1490
             +EE KM    D+   ++++RS +K +R+ R  R S+ +  +S  S+  + + +G     
Sbjct: 183  PVEEGKMERKEDNNVFEIIVRSGKKEERRSRK-RTSDNAIVSSN-SLPPKTIWKGLKNPT 240

Query: 1489 -SSAKRALNPRSRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGQVASLKFWAEAAGV 1313
             SS KRA N RSRRL I++NEAEMS GV+V+A+LERIK TLEKE+G+V +L+ WAEAAGV
Sbjct: 241  LSSGKRASNYRSRRLTISKNEAEMSIGVKVIADLERIKETLEKETGKVVTLRCWAEAAGV 300

Query: 1312 SEKVLKQHLAFGWHCRAELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 1133
             E+VL QHL FGW+C+ EL++STR LVL+LARNYRGLG+   DL+QAGN+G+LQGAERFD
Sbjct: 301  HERVLLQHLRFGWYCQDELMRSTRSLVLYLARNYRGLGVALDDLIQAGNLGLLQGAERFD 360

Query: 1132 HTRGYRFSTYVQFWIRKSMSKMVERHARGIKIPCKLNRAISKIHKARKTLNNGRGKNPED 953
            H+RGYRFSTYVQ+WIRKSMS++V +HARG++IP  L++AI++I KARK   N   K P+D
Sbjct: 361  HSRGYRFSTYVQYWIRKSMSRLVAQHARGVQIPFTLSKAINQIQKARKANYNSHMKYPDD 420

Query: 952  IEIAKYTGLSLAEIRSASECLRIVGSIDQKMGDCLKAKYLEFSPDMSIKSPKEIVMRQHM 773
             EIAK TGLSLA IRSAS CLR+VGS+D KM +     Y+EF+PD S+KSP+E VMRQHM
Sbjct: 421  EEIAKITGLSLARIRSASTCLRVVGSVDHKMWESSDGTYMEFTPDTSLKSPEETVMRQHM 480

Query: 772  KKDIFQILENLDSRERQVLMLRYGLKDYRPKSLEEIGRLFHVSKEWIRKLEKKAMTKLRN 593
            KKDI  +L+ L+ RERQVL+LRYGL +Y PKSLEEIGRLFHVSKEWIRK+EKKA+ KL+ 
Sbjct: 481  KKDIHDLLKGLNLRERQVLVLRYGLNNYDPKSLEEIGRLFHVSKEWIRKIEKKALMKLKV 540

Query: 592  NETCRDLSHYLD 557
             E+ + LSHYL+
Sbjct: 541  EESHKYLSHYLN 552


>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor sigC [Vitis vinifera]
            gi|296081598|emb|CBI20603.3| unnamed protein product
            [Vitis vinifera]
          Length = 561

 Score =  547 bits (1409), Expect = e-152
 Identities = 297/558 (53%), Positives = 371/558 (66%), Gaps = 33/558 (5%)
 Frame = -1

Query: 2131 MGFRLNLKWVSPIQSHFFSTSPYRL---SVRGRDGSFNSARLSFLSIISEDSASHFQDSV 1961
            MGFRLNLKW  PI     + SP RL   SV+G++ SF+S R SF S+ SED  S ++D  
Sbjct: 3    MGFRLNLKWDFPISCPTLTNSPSRLCTSSVQGKEASFDSTRFSFPSVTSEDCESLYKDPF 62

Query: 1960 KAYTCSFVNSQTIENDYSETEEIRQK------------------------SASCKGQDAG 1853
            K + CS    QT ENDYS  E ++ K                        SAS  G  A 
Sbjct: 63   KPFACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNASQAPIGEDISASVAGLQAS 122

Query: 1852 STSGFRLLMENLYVLESTFADSDAXXXXXXXXXXXXXXXXXXLFNNCLSRTVKTSDVFDL 1673
              S F LL+ENL +LE  FADS+                   LF  CLSRT+KTS  FDL
Sbjct: 123  KASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSFDL 182

Query: 1672 SDIPIDHIEEKKMNDSADDLRGKVVIRSKRKGKRKLRTARVSEESNETSLLSVHLEALQE 1493
               P +HI E + N + DD   KVV+RS +K +RK +  R  E+++      +  + +++
Sbjct: 183  FSAPTEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKTIRK 242

Query: 1492 G------SSAKRALNPRSRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGQVASLKFW 1331
            G      S+ KR LN R +RLM A+NEAEMSKGV++VANLERI+ TLE+E G VASL  W
Sbjct: 243  GPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNW 302

Query: 1330 AEAAGVSEKVLKQHLAFGWHCRAELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQ 1151
            AEAAGV +KVL+Q L FGW+CR EL++ST  LVL++ARNYRG+G+ F D+LQAGN+GVLQ
Sbjct: 303  AEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGVLQ 362

Query: 1150 GAERFDHTRGYRFSTYVQFWIRKSMSKMVERHARGIKIPCKLNRAISKIHKARKTLNNGR 971
            GAERFDHT+GYRFSTYVQ+WIRKSMS +V RHARG+KIP  LNRAI +I KARK L    
Sbjct: 363  GAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKARKALYKSH 422

Query: 970  GKNPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKMGDCLKAKYLEFSPDMSIKSPKEI 791
            G+ P+D EIAK+TGLSLA+IRSA  CLR+VGS DQ   DC  A  LEF+PD SIKSP+E 
Sbjct: 423  GRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPDTSIKSPEEG 482

Query: 790  VMRQHMKKDIFQILENLDSRERQVLMLRYGLKDYRPKSLEEIGRLFHVSKEWIRKLEKKA 611
             M+Q  +KDI  +L+ LD RERQ+L+LRYG  + + KSLEEIGR F+VSKEWIRKLEK A
Sbjct: 483  FMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSKEWIRKLEKTA 542

Query: 610  MTKLRNNETCRDLSHYLD 557
            +  LR+ E C++L HY+D
Sbjct: 543  LANLRDEEICQNLRHYVD 560


>ref|XP_009361495.1| PREDICTED: RNA polymerase sigma factor sigC-like isoform X1 [Pyrus x
            bretschneideri]
          Length = 558

 Score =  542 bits (1397), Expect = e-151
 Identities = 307/556 (55%), Positives = 384/556 (69%), Gaps = 32/556 (5%)
 Frame = -1

Query: 2128 GFRLNL--KWVSPIQSHFFSTSPYR----LSVRGRDGSFNSARLSFLSIISEDSASHFQD 1967
            GFRLNL      P +SH+ + S        SVRGR+GSFNSARLSFLSIISE+  +  +D
Sbjct: 4    GFRLNLLKSGFPPQRSHWQTASSNSKLSSASVRGREGSFNSARLSFLSIISEEGETSGKD 63

Query: 1966 SVKAYTCSFVNSQTIENDYSETEEIRQKSA--------------------SCKGQDAGST 1847
            ++K Y+CS  + Q +E+ +S+ EEIR +                      S KG DA S 
Sbjct: 64   TLKIYSCSSASPQILEDGFSDLEEIRFRRVPKSSSSNTIGNNQMPDGDFISSKGIDACSA 123

Query: 1846 SGFRLLMENLYVLESTFADSDAXXXXXXXXXXXXXXXXXXLFNNCLSRTVKTSDVFDLSD 1667
            + F LL++NL  LE TFA+SD                   LF+  LSRT+ +S  F LSD
Sbjct: 124  AHFSLLLKNLDALEETFANSDVLKLENEILLQLGRLGALQLFDAYLSRTLTSSSFFYLSD 183

Query: 1666 IPIDHIEEKKMNDSADDLRGKVVIRSKRKGKRKLRTARVSEESNETSLLSVHLEALQEG- 1490
            IP   IEE KM+   D+ RGK ++RS +K +R+ R  R S+ +  +S L +  +   EG 
Sbjct: 184  IPTVPIEEDKMDKKVDNYRGKTIVRSGKKEERRSRK-RASDNARVSSEL-LPPKTTCEGF 241

Query: 1489 -----SSAKRALNPRSRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGQVASLKFWAE 1325
                 SSAKRA N R RRL I  NE E+S GV+V+ANLER+K TLEKE+G VA+L  WAE
Sbjct: 242  KPPTVSSAKRASNSRRRRLTIVLNEPELSTGVKVIANLERVKATLEKETGTVATLSCWAE 301

Query: 1324 AAGVSEKVLKQHLAFGWHCRAELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGA 1145
            AAGV EKVL Q L FGWHC+ ELI+STR LVL+LAR+YRGLG+   DLLQAGN+G+LQGA
Sbjct: 302  AAGVDEKVLLQKLHFGWHCQDELIRSTRSLVLYLARSYRGLGVAMDDLLQAGNLGLLQGA 361

Query: 1144 ERFDHTRGYRFSTYVQFWIRKSMSKMVERHARGIKIPCKLNRAISKIHKARKTLNNGRGK 965
            ER+DH+RGYRFSTYV++WI+KSMS++V RHARGI+IP  L++AI++I KARK   N + K
Sbjct: 362  ERYDHSRGYRFSTYVRYWIKKSMSRLVARHARGIQIPFMLSKAINQIQKARKATYNSQMK 421

Query: 964  NPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKMGDCLKAKYLEFSPDMSIKSPKEIVM 785
             P D EIAK TGLSL  IRSAS CLR+VGSID KM D     ++EF+ D SIKSP+E VM
Sbjct: 422  YPNDDEIAKITGLSLVRIRSASTCLRVVGSIDDKMWDSSAGTFMEFTADKSIKSPEETVM 481

Query: 784  RQHMKKDIFQILENLDSRERQVLMLRYGLKDYRPKSLEEIGRLFHVSKEWIRKLEKKAMT 605
            RQHMK DI  +L+ L+S+ERQVL+LRYGL +Y PKSLEEIG+LF VSKEWIRK+EKKA+T
Sbjct: 482  RQHMKNDIHDLLKCLNSKERQVLVLRYGLNNYDPKSLEEIGKLFDVSKEWIRKIEKKALT 541

Query: 604  KLRNNETCRDLSHYLD 557
            KLR+NET R LSHYL+
Sbjct: 542  KLRDNETHRSLSHYLN 557


>ref|XP_006450758.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
            gi|567917506|ref|XP_006450759.1| hypothetical protein
            CICLE_v10007968mg [Citrus clementina]
            gi|557553984|gb|ESR63998.1| hypothetical protein
            CICLE_v10007968mg [Citrus clementina]
            gi|557553985|gb|ESR63999.1| hypothetical protein
            CICLE_v10007968mg [Citrus clementina]
          Length = 383

 Score =  542 bits (1397), Expect = e-151
 Identities = 292/378 (77%), Positives = 315/378 (83%), Gaps = 9/378 (2%)
 Frame = -1

Query: 2131 MGFRLNLKWVSPIQSHFFSTSPYRLS---VRGRDGSFNSARLSFLSIISEDSASHFQDSV 1961
            MGFRLNLKWVSP+QSHFF+TS  RLS   VRGR+GSFNSARLSFLS ISEDSAS+FQD V
Sbjct: 3    MGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQDPV 62

Query: 1960 KAYTCSFVNSQTIENDYSETEEIRQKSASCKGQDAGSTSGFRLLMENLYVLESTFADSDA 1781
            KAYTCSFVN+QT+ENDYSETEEIRQKS SC GQDA S S FRLLMENL VLESTFADSDA
Sbjct: 63   KAYTCSFVNTQTVENDYSETEEIRQKSTSCIGQDASSRSDFRLLMENLDVLESTFADSDA 122

Query: 1780 XXXXXXXXXXXXXXXXXXLFNNCLSRTVKTSDVFDLSDIPIDHIEEKKMNDSADDLRGKV 1601
                              LFN+ LSR VKTS+V DLSD+   H EE+KMNDS D   GK+
Sbjct: 123  LRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDV---HTEEQKMNDSRDYHMGKI 179

Query: 1600 VIRSKRKGKRKLRTARVSEESNETSLLSVHLEALQEGS------SAKRALNPRSRRLMIA 1439
            ++ SKRKGKRKL+TARVSEES ETSLLS+  EALQEG       S +RALN R RRLMIA
Sbjct: 180  LVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSPERALNSRGRRLMIA 239

Query: 1438 RNEAEMSKGVQVVANLERIKTTLEKESGQVASLKFWAEAAGVSEKVLKQHLAFGWHCRAE 1259
            RNEAEMSKGVQVVANLERIKTTLEKESG+ ASL  WA+AAGVSE+VLKQHLAFGW+CR E
Sbjct: 240  RNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREE 299

Query: 1258 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYRFSTYVQFWIRKS 1079
            LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGY+FSTYVQ+WIRKS
Sbjct: 300  LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359

Query: 1078 MSKMVERHARGIKIPCKL 1025
            +SKMV RHARGIKIP  L
Sbjct: 360  ISKMVARHARGIKIPVPL 377


>ref|XP_006450757.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
            gi|567917512|ref|XP_006450762.1| hypothetical protein
            CICLE_v10007968mg [Citrus clementina]
            gi|557553983|gb|ESR63997.1| hypothetical protein
            CICLE_v10007968mg [Citrus clementina]
            gi|557553988|gb|ESR64002.1| hypothetical protein
            CICLE_v10007968mg [Citrus clementina]
          Length = 381

 Score =  542 bits (1397), Expect = e-151
 Identities = 292/378 (77%), Positives = 315/378 (83%), Gaps = 9/378 (2%)
 Frame = -1

Query: 2131 MGFRLNLKWVSPIQSHFFSTSPYRLS---VRGRDGSFNSARLSFLSIISEDSASHFQDSV 1961
            MGFRLNLKWVSP+QSHFF+TS  RLS   VRGR+GSFNSARLSFLS ISEDSAS+FQD V
Sbjct: 3    MGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQDPV 62

Query: 1960 KAYTCSFVNSQTIENDYSETEEIRQKSASCKGQDAGSTSGFRLLMENLYVLESTFADSDA 1781
            KAYTCSFVN+QT+ENDYSETEEIRQKS SC GQDA S S FRLLMENL VLESTFADSDA
Sbjct: 63   KAYTCSFVNTQTVENDYSETEEIRQKSTSCIGQDASSRSDFRLLMENLDVLESTFADSDA 122

Query: 1780 XXXXXXXXXXXXXXXXXXLFNNCLSRTVKTSDVFDLSDIPIDHIEEKKMNDSADDLRGKV 1601
                              LFN+ LSR VKTS+V DLSD+   H EE+KMNDS D   GK+
Sbjct: 123  LRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDV---HTEEQKMNDSRDYHMGKI 179

Query: 1600 VIRSKRKGKRKLRTARVSEESNETSLLSVHLEALQEGS------SAKRALNPRSRRLMIA 1439
            ++ SKRKGKRKL+TARVSEES ETSLLS+  EALQEG       S +RALN R RRLMIA
Sbjct: 180  LVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSPERALNSRGRRLMIA 239

Query: 1438 RNEAEMSKGVQVVANLERIKTTLEKESGQVASLKFWAEAAGVSEKVLKQHLAFGWHCRAE 1259
            RNEAEMSKGVQVVANLERIKTTLEKESG+ ASL  WA+AAGVSE+VLKQHLAFGW+CR E
Sbjct: 240  RNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREE 299

Query: 1258 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYRFSTYVQFWIRKS 1079
            LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGY+FSTYVQ+WIRKS
Sbjct: 300  LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359

Query: 1078 MSKMVERHARGIKIPCKL 1025
            +SKMV RHARGIKIP  L
Sbjct: 360  ISKMVARHARGIKIPVPL 377


>gb|KDO79965.1| hypothetical protein CISIN_1g009449mg [Citrus sinensis]
            gi|641861278|gb|KDO79966.1| hypothetical protein
            CISIN_1g009449mg [Citrus sinensis]
          Length = 381

 Score =  542 bits (1396), Expect = e-151
 Identities = 292/378 (77%), Positives = 315/378 (83%), Gaps = 9/378 (2%)
 Frame = -1

Query: 2131 MGFRLNLKWVSPIQSHFFSTSPYRLS---VRGRDGSFNSARLSFLSIISEDSASHFQDSV 1961
            MGFRLNLKWVSP+QSHFF+TS  RLS   VRGR+GSFNSARLSFLS ISEDSAS+FQD V
Sbjct: 3    MGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQDPV 62

Query: 1960 KAYTCSFVNSQTIENDYSETEEIRQKSASCKGQDAGSTSGFRLLMENLYVLESTFADSDA 1781
            KAYTCSFVN+QT+ENDYSETEEIRQKS SC GQDA S S FRLLMENL VLESTFADSDA
Sbjct: 63   KAYTCSFVNTQTVENDYSETEEIRQKSTSCIGQDASSRSDFRLLMENLDVLESTFADSDA 122

Query: 1780 XXXXXXXXXXXXXXXXXXLFNNCLSRTVKTSDVFDLSDIPIDHIEEKKMNDSADDLRGKV 1601
                              LFN+ LSR VKTS+V DLSD+   H EE+KMNDS D   GK+
Sbjct: 123  LRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDV---HTEEQKMNDSRDYHMGKI 179

Query: 1600 VIRSKRKGKRKLRTARVSEESNETSLLSVHLEALQEGS------SAKRALNPRSRRLMIA 1439
            ++ SKRKGKRKL+TARVSEES ETSLLS+  EALQEG       SA+RALN R RRL IA
Sbjct: 180  LVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIA 239

Query: 1438 RNEAEMSKGVQVVANLERIKTTLEKESGQVASLKFWAEAAGVSEKVLKQHLAFGWHCRAE 1259
            RNEAEMSKGVQVVANLERIKTTLEKESG+ ASL  WA+AAGVSE+VLKQHLAFGW+CR E
Sbjct: 240  RNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREE 299

Query: 1258 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYRFSTYVQFWIRKS 1079
            LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGY+FSTYVQ+WIRKS
Sbjct: 300  LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359

Query: 1078 MSKMVERHARGIKIPCKL 1025
            +SKMV RHARGIKIP  L
Sbjct: 360  ISKMVARHARGIKIPVPL 377


>gb|KDO79964.1| hypothetical protein CISIN_1g009449mg [Citrus sinensis]
          Length = 383

 Score =  542 bits (1396), Expect = e-151
 Identities = 292/378 (77%), Positives = 315/378 (83%), Gaps = 9/378 (2%)
 Frame = -1

Query: 2131 MGFRLNLKWVSPIQSHFFSTSPYRLS---VRGRDGSFNSARLSFLSIISEDSASHFQDSV 1961
            MGFRLNLKWVSP+QSHFF+TS  RLS   VRGR+GSFNSARLSFLS ISEDSAS+FQD V
Sbjct: 3    MGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQDPV 62

Query: 1960 KAYTCSFVNSQTIENDYSETEEIRQKSASCKGQDAGSTSGFRLLMENLYVLESTFADSDA 1781
            KAYTCSFVN+QT+ENDYSETEEIRQKS SC GQDA S S FRLLMENL VLESTFADSDA
Sbjct: 63   KAYTCSFVNTQTVENDYSETEEIRQKSTSCIGQDASSRSDFRLLMENLDVLESTFADSDA 122

Query: 1780 XXXXXXXXXXXXXXXXXXLFNNCLSRTVKTSDVFDLSDIPIDHIEEKKMNDSADDLRGKV 1601
                              LFN+ LSR VKTS+V DLSD+   H EE+KMNDS D   GK+
Sbjct: 123  LRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDV---HTEEQKMNDSRDYHMGKI 179

Query: 1600 VIRSKRKGKRKLRTARVSEESNETSLLSVHLEALQEGS------SAKRALNPRSRRLMIA 1439
            ++ SKRKGKRKL+TARVSEES ETSLLS+  EALQEG       SA+RALN R RRL IA
Sbjct: 180  LVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIA 239

Query: 1438 RNEAEMSKGVQVVANLERIKTTLEKESGQVASLKFWAEAAGVSEKVLKQHLAFGWHCRAE 1259
            RNEAEMSKGVQVVANLERIKTTLEKESG+ ASL  WA+AAGVSE+VLKQHLAFGW+CR E
Sbjct: 240  RNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREE 299

Query: 1258 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYRFSTYVQFWIRKS 1079
            LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGY+FSTYVQ+WIRKS
Sbjct: 300  LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359

Query: 1078 MSKMVERHARGIKIPCKL 1025
            +SKMV RHARGIKIP  L
Sbjct: 360  ISKMVARHARGIKIPVPL 377


>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 560

 Score =  541 bits (1395), Expect = e-151
 Identities = 294/557 (52%), Positives = 387/557 (69%), Gaps = 33/557 (5%)
 Frame = -1

Query: 2128 GFRLNLK----WVSPIQSHFFSTSPYRLSVRGRDGSFNSARLSFLSIISEDSASHFQDSV 1961
            GFRLNLK    + SP      S+SP    VRGR+ +   +RLSFLS+ISE+     +D +
Sbjct: 4    GFRLNLKLDFPFHSPNSPSRLSSSPSSSFVRGREATSYQSRLSFLSVISEEGDIAHRDPL 63

Query: 1960 KAYTCSFVNSQTIENDYSETE----------------------EIRQKSASCKGQDAGST 1847
            K Y  S+   QT+EN++S+ E                       +++            T
Sbjct: 64   KTYAYSYA-VQTVENEHSQGEGFKVNFGKRSHFGLNIIGDAEVSLKEDIFVSPSSTKERT 122

Query: 1846 SGFRLLMENLYVLESTFADSDAXXXXXXXXXXXXXXXXXXLFNNCLSRTVKTSDVFDLSD 1667
            S F LL+ENL +LE +FADSDA                  LFN CL+RT++T++V ++SD
Sbjct: 123  SRFSLLLENLNILEQSFADSDASKLEEDILLQLGKLGALKLFNTCLTRTLETTNVLEVSD 182

Query: 1666 IPIDHIEEKKMNDSADDLRGKVVIRSKRKGKRKLRTARVS-EESNETSLLSVHLEALQEG 1490
            +  + I E  +N ++ + + KVV+ + +K +RK R  R S  + +++  L +    +Q G
Sbjct: 183  VHTEIIGECNINGTSINNQIKVVVHTAKKEERKSRRERASARKGHKSPSLPLPSRPIQSG 242

Query: 1489 S------SAKRALNPRSRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGQVASLKFWA 1328
            S      S K+A   +SRRL+IARNEAEM++G++V+A+LE+I+TTLE+E+ +V SL  WA
Sbjct: 243  SEKPTVSSGKKASKSKSRRLIIARNEAEMARGIKVLADLEKIRTTLEEETERVVSLSCWA 302

Query: 1327 EAAGVSEKVLKQHLAFGWHCRAELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQG 1148
            EAAG+  KVL+Q L+FGW+CR ELIKSTR LVL+ ARNYRG GI   DLLQAGN+GVL+G
Sbjct: 303  EAAGLDVKVLQQQLSFGWYCRDELIKSTRSLVLYFARNYRGTGIALEDLLQAGNLGVLEG 362

Query: 1147 AERFDHTRGYRFSTYVQFWIRKSMSKMVERHARGIKIPCKLNRAISKIHKARKTLNNGRG 968
            AERFDHTRGYRFSTYVQ+WIRKSMSK+V R ARGI+IPC L+RAI +I KARK L    G
Sbjct: 363  AERFDHTRGYRFSTYVQYWIRKSMSKIVSRLARGIQIPCTLSRAIYQIQKARKALTTSNG 422

Query: 967  KNPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKMGDCLKAKYLEFSPDMSIKSPKEIV 788
            K P+D EIAKYTGLSLA+I SAS CLR+VGSIDQK+G+ L AKYLEF PD S++SP+E+V
Sbjct: 423  KYPDDDEIAKYTGLSLAKIESASRCLRVVGSIDQKIGESLNAKYLEFLPDTSVQSPEEVV 482

Query: 787  MRQHMKKDIFQILENLDSRERQVLMLRYGLKDYRPKSLEEIGRLFHVSKEWIRKLEKKAM 608
            MRQHM +D+  +L +LDSRERQVL+LR+GL DY+PKSLEEIGR FHVSKEW+R+LEK+ M
Sbjct: 483  MRQHMIQDMHNLLRSLDSRERQVLILRFGLNDYQPKSLEEIGRHFHVSKEWVRRLEKRVM 542

Query: 607  TKLRNNETCRDLSHYLD 557
            T+LRN ETCR+L HY++
Sbjct: 543  TRLRNEETCRNLRHYIN 559


>ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao]
            gi|508782582|gb|EOY29838.1| RNApolymerase sigma-subunit
            C, putative [Theobroma cacao]
          Length = 848

 Score =  541 bits (1393), Expect = e-150
 Identities = 301/553 (54%), Positives = 372/553 (67%), Gaps = 32/553 (5%)
 Frame = -1

Query: 2119 LNLKWVSPIQSHFFSTSPYRLSVRGRDGSFNSARLSFLSIISEDSASHFQDSVKAYTCSF 1940
            LNLK V P+ SHF + SP RL   G              ++S       +D +KAY  S 
Sbjct: 317  LNLKGVCPVPSHFLANSPSRLPSSG--------------VLS------LKDPLKAYASSA 356

Query: 1939 VNSQTIENDYSETEEIR--------------------------QKSASCKGQDAGSTSGF 1838
               QT+E    E EE++                           KS+S     A   S +
Sbjct: 357  A-PQTLEKGCLEIEEMKVNIGKGSQAHSHSLTMIDKTHELIGGDKSSSRTSPQACKASHY 415

Query: 1837 RLLMENLYVLESTFADSDAXXXXXXXXXXXXXXXXXXLFNNCLSRTVKTSDVFDLSDIPI 1658
             LLMENL VLE TFADSD                   LFN CLSRT+K S++ DLSD+P 
Sbjct: 416  SLLMENLDVLEETFADSDVLTLEREILLQLGRFGALKLFNTCLSRTLKASNILDLSDVPA 475

Query: 1657 DHIEEKKMNDSADDLRGKVVIRSKRKGKRKLRTARVSEESNETSLLSVHLEALQ------ 1496
            +   +  MN S D  +  +V+ S++K +RK    R  E     S   +    L       
Sbjct: 476  NS-GDCNMNLSVDGQKDNIVVCSRKKKQRKKIRERALENPTIISTQLMPSNTLHGRFQKP 534

Query: 1495 EGSSAKRALNPRSRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGQVASLKFWAEAAG 1316
            + SSAKR  + RSRRL IARNEAEMSKGV+VVANLERI+TTLE+E+G+ ASL  WAEAAG
Sbjct: 535  KVSSAKRVSDSRSRRLRIARNEAEMSKGVKVVANLERIRTTLEEETGRAASLSCWAEAAG 594

Query: 1315 VSEKVLKQHLAFGWHCRAELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 1136
            VSEKVL+QHL FGW+CR EL++STR LVL+ ARNYRGLGI   DL+QAG++GVLQGAERF
Sbjct: 595  VSEKVLQQHLRFGWYCRDELLRSTRSLVLYFARNYRGLGIAHEDLIQAGSLGVLQGAERF 654

Query: 1135 DHTRGYRFSTYVQFWIRKSMSKMVERHARGIKIPCKLNRAISKIHKARKTLNNGRGKNPE 956
            DHTRGYRFSTYVQFWIRKS+S++V RHARGI++PC L+RAI +I KARK L+   GK P+
Sbjct: 655  DHTRGYRFSTYVQFWIRKSVSRIVARHARGIQVPCTLSRAIVQIQKARKALSKSHGKYPD 714

Query: 955  DIEIAKYTGLSLAEIRSASECLRIVGSIDQKMGDCLKAKYLEFSPDMSIKSPKEIVMRQH 776
            +  IAK+TGLSLA+IRSA++C+R+VGSIDQK+GDC+ AKYLEF PD+S++SP++ VMRQH
Sbjct: 715  EDAIAKFTGLSLAKIRSANKCMRVVGSIDQKIGDCMNAKYLEFIPDLSVRSPEKTVMRQH 774

Query: 775  MKKDIFQILENLDSRERQVLMLRYGLKDYRPKSLEEIGRLFHVSKEWIRKLEKKAMTKLR 596
            MK+DI  +L  LD+RERQV++LRYGLK   PKSLEEIGRLFHVSKEWIR++E KAM KLR
Sbjct: 775  MKEDIHDLLNGLDARERQVMVLRYGLKGSPPKSLEEIGRLFHVSKEWIRRIEMKAMKKLR 834

Query: 595  NNETCRDLSHYLD 557
            + ETCR+LSHYLD
Sbjct: 835  DKETCRNLSHYLD 847


>gb|AKC88690.1| sigma factor [Melianthus villosus]
          Length = 558

 Score =  538 bits (1385), Expect = e-149
 Identities = 286/550 (52%), Positives = 382/550 (69%), Gaps = 26/550 (4%)
 Frame = -1

Query: 2131 MGFRLNLKWVSPIQSHFFSTSPYRLS---VRGRDGSFNSARLSFLSIISEDSASHFQDSV 1961
            +GF+L+LKW  P+QSH    SP RLS   VRGR+   +SA LSFLS ISE+  + +++ +
Sbjct: 3    IGFKLHLKWGFPLQSHPLPDSPSRLSSSSVRGREAYISSASLSFLSNISEEGDTCYRNLL 62

Query: 1960 KAYTCSFVNSQTIENDYSETEEIRQKSASCKGQ-----------------------DAGS 1850
             A  CSF + QT++    + EE++       G                        +  +
Sbjct: 63   NAKACSFASPQTLDGGSLKFEEMKINIGKRSGSNLRNMIDGNQRLGEGRYTSQISLETCN 122

Query: 1849 TSGFRLLMENLYVLESTFADSDAXXXXXXXXXXXXXXXXXXLFNNCLSRTVKTSDVFDLS 1670
             S FRLL++NL  LE TF DS+                   LF+  LSRT++ S++FDLS
Sbjct: 123  ISQFRLLVQNLDTLEGTFVDSNISLLEKDILKQLEKLGARKLFDTRLSRTLRASNLFDLS 182

Query: 1669 DIPIDHIEEKKMNDSADDLRGKVVIRSKRKGKRKLRTARVSEESNETSLLSVHLEALQEG 1490
            D+PI +I++ + N    D  GK  + S +K +RK R AR SE SN+ S +S+ L+A+++G
Sbjct: 183  DVPIGNIKDPETNTIMGDQIGKTFVCSGKKAERKSRRARASENSNKMSSISLPLKAVRKG 242

Query: 1489 SSAKRALNPRSRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGQVASLKFWAEAAGVS 1310
               K  L+ R RR MIARNEAEMS+GV+V+A+LERIKT LEKE+G++A+L  WAEAAGV 
Sbjct: 243  FQ-KPTLSSRGRRTMIARNEAEMSRGVKVIADLERIKTILEKETGRIATLSSWAEAAGVD 301

Query: 1309 EKVLKQHLAFGWHCRAELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 1130
            +K L QHL +GW+CR EL++STR LVL+LARNYRGLGI   DLLQ+GN+GVLQGAERFDH
Sbjct: 302  KKDLHQHLLYGWYCRDELLRSTRSLVLYLARNYRGLGIAHEDLLQSGNLGVLQGAERFDH 361

Query: 1129 TRGYRFSTYVQFWIRKSMSKMVERHARGIKIPCKLNRAISKIHKARKTLNNGRGKNPEDI 950
            TRGY+ STYVQ+WIRKSMS+ V +HARG+KIP  L+R I++I KAR++L++  G  P+D 
Sbjct: 362  TRGYKLSTYVQYWIRKSMSRTVAQHARGVKIPYTLSRVINQIQKARRSLSSIHGNFPDDT 421

Query: 949  EIAKYTGLSLAEIRSASECLRIVGSIDQKMGDCLKAKYLEFSPDMSIKSPKEIVMRQHMK 770
            EIAK TGLSL +I +A +C R+VGSIDQK+ DC   KY+E +PD+S+ +P+E VMRQHM 
Sbjct: 422  EIAKATGLSLEKIGTAKKCFRVVGSIDQKLEDCFSVKYMELTPDISVPNPEESVMRQHMI 481

Query: 769  KDIFQILENLDSRERQVLMLRYGLKDYRPKSLEEIGRLFHVSKEWIRKLEKKAMTKLRNN 590
            K I+ +L+ LD RE QVL+LR+GL ++ PKSLEEIGR+FHVSKEWIR++EKKA+T LRN 
Sbjct: 482  KGIYDLLKCLDQREMQVLVLRFGLHNHHPKSLEEIGRIFHVSKEWIRRVEKKALTNLRNA 541

Query: 589  ETCRDLSHYL 560
            E  R+L HYL
Sbjct: 542  ENGRELGHYL 551