BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zanthoxylum22_contig00006713
         (1672 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KDO75520.1| hypothetical protein CISIN_1g003277mg [Citrus sin...   764   0.0  
gb|KDO75521.1| hypothetical protein CISIN_1g003277mg [Citrus sin...   701   0.0  
ref|XP_006467996.1| PREDICTED: uncharacterized protein LOC102631...   701   0.0  
ref|XP_006449074.1| hypothetical protein CICLE_v10014158mg [Citr...   697   0.0  
gb|KDO75524.1| hypothetical protein CISIN_1g003277mg [Citrus sin...   632   e-178
ref|XP_006467998.1| PREDICTED: uncharacterized protein LOC102631...   632   e-178
ref|XP_012091393.1| PREDICTED: polyadenylation and cleavage fact...   588   e-165
ref|XP_011037706.1| PREDICTED: polyadenylation and cleavage fact...   539   e-150
ref|XP_002518518.1| conserved hypothetical protein [Ricinus comm...   532   e-148
ref|XP_011037705.1| PREDICTED: polyadenylation and cleavage fact...   528   e-147
ref|XP_011037702.1| PREDICTED: polyadenylation and cleavage fact...   528   e-147
ref|XP_002316604.2| pre-mRNA cleavage complex-related family pro...   522   e-145
ref|XP_007026008.1| PCF11P-similar protein 4, putative isoform 1...   518   e-144
ref|XP_010655357.1| PREDICTED: polyadenylation and cleavage fact...   510   e-141
emb|CBI23183.3| unnamed protein product [Vitis vinifera]              510   e-141
gb|KHG24664.1| Pre-mRNA cleavage complex 2 Pcf11 [Gossypium arbo...   508   e-141
ref|XP_012450329.1| PREDICTED: polyadenylation and cleavage fact...   504   e-139
gb|KJB67158.1| hypothetical protein B456_010G178200 [Gossypium r...   504   e-139
gb|KJB67157.1| hypothetical protein B456_010G178200 [Gossypium r...   504   e-139
ref|XP_012450328.1| PREDICTED: polyadenylation and cleavage fact...   504   e-139

>gb|KDO75520.1| hypothetical protein CISIN_1g003277mg [Citrus sinensis]
          Length = 834

 Score =  764 bits (1972), Expect = 0.0
 Identities = 389/478 (81%), Positives = 417/478 (87%), Gaps = 4/478 (0%)
 Frame = -3

Query: 1424 MESEKILQNHRPSHS--LAFTNNNKAMPNELGQKPSTQIIDKFRALLKLREEAARVGDG- 1254
            MES KILQN RPS S  LAFTNNNKAMPNEL QKPST IIDKFRALLKLRE  ARVGDG 
Sbjct: 1    MESGKILQNPRPSPSPSLAFTNNNKAMPNELAQKPSTPIIDKFRALLKLREAEARVGDGA 60

Query: 1253 DVTLSTEEIVQLYELVLAELTFNSKPIITDLTIIAGEQRAHGDGIAEAICNRIVEVPDDQ 1074
              TLST EIVQLYE VLAELTFNSKPIITDLTIIAGEQRAHGDGIAEAIC RI+E P + 
Sbjct: 61   GTTLSTNEIVQLYETVLAELTFNSKPIITDLTIIAGEQRAHGDGIAEAICTRILEAPVNH 120

Query: 1073 KLPSLYLLDSIVKNIGREYVRYFSSRLSEVFCEAYKQVHPEMYNSMRHLFGTWSTVFPHS 894
            KLPSLYLLDSIVKNI +EYVRYFSSRL EVFCEAY+QVHP++Y++M+HLFGTWSTVFP +
Sbjct: 121  KLPSLYLLDSIVKNINKEYVRYFSSRLPEVFCEAYRQVHPDLYSAMQHLFGTWSTVFPQA 180

Query: 893  VLQKIEAELPFSSQVNKQPSNINSLRASESPRPTHGIHVNPKYIRQLEHSNPDNNIQQGR 714
            VL+KIEAEL FSSQVNKQ SN+NSLRASESPRPTHGIHVNPKYIRQ EHSN D+NIQQ +
Sbjct: 181  VLRKIEAELQFSSQVNKQSSNVNSLRASESPRPTHGIHVNPKYIRQFEHSNTDSNIQQVK 240

Query: 713  GVSSNLKLYGQQSVISYDDFDSNPSEVTSSPVGDQRLNRTGSVGRATFALRPNKLHPSSA 534
            G SSNLK YGQ   I YD+FD+N  E+TSS VG QR N  GSVGRATFAL  NKLHPSS 
Sbjct: 241  GTSSNLKEYGQNPAIGYDEFDTNHLELTSSQVGGQRSNPAGSVGRATFALGANKLHPSST 300

Query: 533  SRLGRPLSPLRVGSEVDEFAVENSPRRLEGASPSHPVFDYGPGRPIRRNEDMSEWRNPNR 354
            SRLGR LSPL +GSE DEFAVENSPRRLEG SPSHPVFDYG GR I RNE++SEWRNPNR
Sbjct: 301  SRLGRSLSPLAIGSEGDEFAVENSPRRLEGTSPSHPVFDYGIGRAIGRNEEVSEWRNPNR 360

Query: 353  FETTYT-YSLSNGHGHQGPRALIDAYGSDRRASNNKPPQVGLLSINGVGKKVASRSWQNT 177
            FE+T T Y+LSNGH HQGPRALIDAYGSDRRASNNKPPQVG + ING+G KVASRSWQNT
Sbjct: 361  FESTSTSYNLSNGHEHQGPRALIDAYGSDRRASNNKPPQVGHMGINGMGNKVASRSWQNT 420

Query: 176  EEEEFDWEDMSPTLVDRGRKNDYLPSSVTPYGSIGTRSDFSKLNASSLESTIRSNHSS 3
            EEEEFDWEDMSPTL+DRGRKND+LPSSV  YGS G R DFSKLNASSLES +R+NHSS
Sbjct: 421  EEEEFDWEDMSPTLLDRGRKNDFLPSSVPLYGSTGARPDFSKLNASSLESDVRTNHSS 478


>gb|KDO75521.1| hypothetical protein CISIN_1g003277mg [Citrus sinensis]
            gi|641856756|gb|KDO75522.1| hypothetical protein
            CISIN_1g003277mg [Citrus sinensis]
            gi|641856757|gb|KDO75523.1| hypothetical protein
            CISIN_1g003277mg [Citrus sinensis]
          Length = 797

 Score =  701 bits (1810), Expect = 0.0
 Identities = 366/478 (76%), Positives = 390/478 (81%), Gaps = 4/478 (0%)
 Frame = -3

Query: 1424 MESEKILQNHRPSHS--LAFTNNNKAMPNELGQKPSTQIIDKFRALLKLREEAARVGDG- 1254
            MES KILQN RPS S  LAFTNNNKAMPNEL QKPST IIDKFRALLKLRE  ARVGDG 
Sbjct: 1    MESGKILQNPRPSPSPSLAFTNNNKAMPNELAQKPSTPIIDKFRALLKLREAEARVGDGA 60

Query: 1253 DVTLSTEEIVQLYELVLAELTFNSKPIITDLTIIAGEQRAHGDGIAEAICNRIVEVPDDQ 1074
              TLST EIVQLYE VLAELTFNSKPIITDLTIIAGEQRAHGDGIAEAIC RI+E P + 
Sbjct: 61   GTTLSTNEIVQLYETVLAELTFNSKPIITDLTIIAGEQRAHGDGIAEAICTRILEAPVNH 120

Query: 1073 KLPSLYLLDSIVKNIGREYVRYFSSRLSEVFCEAYKQVHPEMYNSMRHLFGTWSTVFPHS 894
            KLPSLYLLDSIVKNI +EYVRYFSSRL EVFCEAY+QVHP++Y++M+HLFGTWSTVFP +
Sbjct: 121  KLPSLYLLDSIVKNINKEYVRYFSSRLPEVFCEAYRQVHPDLYSAMQHLFGTWSTVFPQA 180

Query: 893  VLQKIEAELPFSSQVNKQPSNINSLRASESPRPTHGIHVNPKYIRQLEHSNPDNNIQQGR 714
            VL+KIEAEL FSSQVNKQ SN+NSLRASESPRPTHGIHVNPKYIRQ EHSN D+      
Sbjct: 181  VLRKIEAELQFSSQVNKQSSNVNSLRASESPRPTHGIHVNPKYIRQFEHSNTDS------ 234

Query: 713  GVSSNLKLYGQQSVISYDDFDSNPSEVTSSPVGDQRLNRTGSVGRATFALRPNKLHPSSA 534
                                           VG QR N  GSVGRATFAL  NKLHPSS 
Sbjct: 235  -------------------------------VGGQRSNPAGSVGRATFALGANKLHPSST 263

Query: 533  SRLGRPLSPLRVGSEVDEFAVENSPRRLEGASPSHPVFDYGPGRPIRRNEDMSEWRNPNR 354
            SRLGR LSPL +GSE DEFAVENSPRRLEG SPSHPVFDYG GR I RNE++SEWRNPNR
Sbjct: 264  SRLGRSLSPLAIGSEGDEFAVENSPRRLEGTSPSHPVFDYGIGRAIGRNEEVSEWRNPNR 323

Query: 353  FETTYT-YSLSNGHGHQGPRALIDAYGSDRRASNNKPPQVGLLSINGVGKKVASRSWQNT 177
            FE+T T Y+LSNGH HQGPRALIDAYGSDRRASNNKPPQVG + ING+G KVASRSWQNT
Sbjct: 324  FESTSTSYNLSNGHEHQGPRALIDAYGSDRRASNNKPPQVGHMGINGMGNKVASRSWQNT 383

Query: 176  EEEEFDWEDMSPTLVDRGRKNDYLPSSVTPYGSIGTRSDFSKLNASSLESTIRSNHSS 3
            EEEEFDWEDMSPTL+DRGRKND+LPSSV  YGS G R DFSKLNASSLES +R+NHSS
Sbjct: 384  EEEEFDWEDMSPTLLDRGRKNDFLPSSVPLYGSTGARPDFSKLNASSLESDVRTNHSS 441


>ref|XP_006467996.1| PREDICTED: uncharacterized protein LOC102631201 isoform X1 [Citrus
            sinensis] gi|568827290|ref|XP_006467997.1| PREDICTED:
            uncharacterized protein LOC102631201 isoform X2 [Citrus
            sinensis]
          Length = 975

 Score =  701 bits (1810), Expect = 0.0
 Identities = 366/478 (76%), Positives = 390/478 (81%), Gaps = 4/478 (0%)
 Frame = -3

Query: 1424 MESEKILQNHRPSHS--LAFTNNNKAMPNELGQKPSTQIIDKFRALLKLREEAARVGDG- 1254
            MES KILQN RPS S  LAFTNNNKAMPNEL QKPST IIDKFRALLKLRE  ARVGDG 
Sbjct: 1    MESGKILQNPRPSPSPSLAFTNNNKAMPNELAQKPSTPIIDKFRALLKLREAEARVGDGA 60

Query: 1253 DVTLSTEEIVQLYELVLAELTFNSKPIITDLTIIAGEQRAHGDGIAEAICNRIVEVPDDQ 1074
              TLST EIVQLYE VLAELTFNSKPIITDLTIIAGEQRAHGDGIAEAIC RI+E P + 
Sbjct: 61   GTTLSTNEIVQLYETVLAELTFNSKPIITDLTIIAGEQRAHGDGIAEAICTRILEAPVNH 120

Query: 1073 KLPSLYLLDSIVKNIGREYVRYFSSRLSEVFCEAYKQVHPEMYNSMRHLFGTWSTVFPHS 894
            KLPSLYLLDSIVKNI +EYVRYFSSRL EVFCEAY+QVHP++Y++M+HLFGTWSTVFP +
Sbjct: 121  KLPSLYLLDSIVKNINKEYVRYFSSRLPEVFCEAYRQVHPDLYSAMQHLFGTWSTVFPQA 180

Query: 893  VLQKIEAELPFSSQVNKQPSNINSLRASESPRPTHGIHVNPKYIRQLEHSNPDNNIQQGR 714
            VL+KIEAEL FSSQVNKQ SN+NSLRASESPRPTHGIHVNPKYIRQ EHSN D+      
Sbjct: 181  VLRKIEAELQFSSQVNKQSSNVNSLRASESPRPTHGIHVNPKYIRQFEHSNTDS------ 234

Query: 713  GVSSNLKLYGQQSVISYDDFDSNPSEVTSSPVGDQRLNRTGSVGRATFALRPNKLHPSSA 534
                                           VG QR N  GSVGRATFAL  NKLHPSS 
Sbjct: 235  -------------------------------VGGQRSNPAGSVGRATFALGANKLHPSST 263

Query: 533  SRLGRPLSPLRVGSEVDEFAVENSPRRLEGASPSHPVFDYGPGRPIRRNEDMSEWRNPNR 354
            SRLGR LSPL +GSE DEFAVENSPRRLEG SPSHPVFDYG GR I RNE++SEWRNPNR
Sbjct: 264  SRLGRSLSPLAIGSEGDEFAVENSPRRLEGTSPSHPVFDYGIGRAIGRNEEVSEWRNPNR 323

Query: 353  FETTYT-YSLSNGHGHQGPRALIDAYGSDRRASNNKPPQVGLLSINGVGKKVASRSWQNT 177
            FE+T T Y+LSNGH HQGPRALIDAYGSDRRASNNKPPQVG + ING+G KVASRSWQNT
Sbjct: 324  FESTSTSYNLSNGHEHQGPRALIDAYGSDRRASNNKPPQVGHMGINGMGNKVASRSWQNT 383

Query: 176  EEEEFDWEDMSPTLVDRGRKNDYLPSSVTPYGSIGTRSDFSKLNASSLESTIRSNHSS 3
            EEEEFDWEDMSPTL+DRGRKND+LPSSV  YGS G R DFSKLNASSLES +R+NHSS
Sbjct: 384  EEEEFDWEDMSPTLLDRGRKNDFLPSSVPLYGSTGARPDFSKLNASSLESDVRTNHSS 441


>ref|XP_006449074.1| hypothetical protein CICLE_v10014158mg [Citrus clementina]
            gi|557551685|gb|ESR62314.1| hypothetical protein
            CICLE_v10014158mg [Citrus clementina]
          Length = 975

 Score =  697 bits (1800), Expect = 0.0
 Identities = 366/478 (76%), Positives = 389/478 (81%), Gaps = 4/478 (0%)
 Frame = -3

Query: 1424 MESEKILQNHRPSHS--LAFTNNNKAMPNELGQKPSTQIIDKFRALLKLREEAARVGDG- 1254
            MES KILQN RPS S  LAFTNNNKAMPNEL QKPST IIDKFRALLKLREE ARVGDG 
Sbjct: 1    MESGKILQNPRPSPSPSLAFTNNNKAMPNELAQKPSTPIIDKFRALLKLREEEARVGDGA 60

Query: 1253 DVTLSTEEIVQLYELVLAELTFNSKPIITDLTIIAGEQRAHGDGIAEAICNRIVEVPDDQ 1074
              TLST+EIVQLYE VLAELTFNSKPIITDLTIIAGEQRAHGDGIAEAIC RI+E P + 
Sbjct: 61   GTTLSTDEIVQLYETVLAELTFNSKPIITDLTIIAGEQRAHGDGIAEAICTRILEAPVNH 120

Query: 1073 KLPSLYLLDSIVKNIGREYVRYFSSRLSEVFCEAYKQVHPEMYNSMRHLFGTWSTVFPHS 894
            KLPSLYLLDSIVKNI +EYVRYFSSRL EVFCEAY+QVHP++Y++M+HLFGTWSTVFP +
Sbjct: 121  KLPSLYLLDSIVKNINKEYVRYFSSRLPEVFCEAYRQVHPDLYSAMQHLFGTWSTVFPQA 180

Query: 893  VLQKIEAELPFSSQVNKQPSNINSLRASESPRPTHGIHVNPKYIRQLEHSNPDNNIQQGR 714
            VL KIEAEL FSSQVNKQ SN+NSLRASESPRPTHGIHVNPKYIRQ EHSN D+      
Sbjct: 181  VLHKIEAELQFSSQVNKQSSNVNSLRASESPRPTHGIHVNPKYIRQFEHSNTDS------ 234

Query: 713  GVSSNLKLYGQQSVISYDDFDSNPSEVTSSPVGDQRLNRTGSVGRATFALRPNKLHPSSA 534
                                           VG QR N  GSVGRATFAL  NKLHPSS 
Sbjct: 235  -------------------------------VGGQRSNPAGSVGRATFALGANKLHPSST 263

Query: 533  SRLGRPLSPLRVGSEVDEFAVENSPRRLEGASPSHPVFDYGPGRPIRRNEDMSEWRNPNR 354
            SRLGR LSPL +GSE DEFAVENSPRRLEG SPSHPVFDYG GR I RNE++SEWRNPNR
Sbjct: 264  SRLGRSLSPLGIGSEGDEFAVENSPRRLEGTSPSHPVFDYGIGRAIGRNEEVSEWRNPNR 323

Query: 353  FETTYT-YSLSNGHGHQGPRALIDAYGSDRRASNNKPPQVGLLSINGVGKKVASRSWQNT 177
            FE+T T Y+LSNGH HQGPRALIDAYGSDRRASNNKP QVG + ING+G KVASRSWQNT
Sbjct: 324  FESTSTSYNLSNGHEHQGPRALIDAYGSDRRASNNKPSQVGHMGINGMGNKVASRSWQNT 383

Query: 176  EEEEFDWEDMSPTLVDRGRKNDYLPSSVTPYGSIGTRSDFSKLNASSLESTIRSNHSS 3
            EEEEFDWEDMSPTL+DRGRK D+LPSSV  YGS G R DFSKLNASSLES IR+NHSS
Sbjct: 384  EEEEFDWEDMSPTLLDRGRKFDFLPSSVPLYGSTGARPDFSKLNASSLESDIRTNHSS 441


>gb|KDO75524.1| hypothetical protein CISIN_1g003277mg [Citrus sinensis]
          Length = 763

 Score =  632 bits (1631), Expect = e-178
 Identities = 339/478 (70%), Positives = 361/478 (75%), Gaps = 4/478 (0%)
 Frame = -3

Query: 1424 MESEKILQNHRPSHS--LAFTNNNKAMPNELGQKPSTQIIDKFRALLKLREEAARVGDG- 1254
            MES KILQN RPS S  LAFTNNNKAMPNEL QKPST IIDKFRALLKLRE  ARVGDG 
Sbjct: 1    MESGKILQNPRPSPSPSLAFTNNNKAMPNELAQKPSTPIIDKFRALLKLREAEARVGDGA 60

Query: 1253 DVTLSTEEIVQLYELVLAELTFNSKPIITDLTIIAGEQRAHGDGIAEAICNRIVEVPDDQ 1074
              TLST EIVQLYE VLAELTFNSKPIITDLTIIAGEQRAHGDGIAEAIC RI+EV    
Sbjct: 61   GTTLSTNEIVQLYETVLAELTFNSKPIITDLTIIAGEQRAHGDGIAEAICTRILEV---- 116

Query: 1073 KLPSLYLLDSIVKNIGREYVRYFSSRLSEVFCEAYKQVHPEMYNSMRHLFGTWSTVFPHS 894
                                          FCEAY+QVHP++Y++M+HLFGTWSTVFP +
Sbjct: 117  ------------------------------FCEAYRQVHPDLYSAMQHLFGTWSTVFPQA 146

Query: 893  VLQKIEAELPFSSQVNKQPSNINSLRASESPRPTHGIHVNPKYIRQLEHSNPDNNIQQGR 714
            VL+KIEAEL FSSQVNKQ SN+NSLRASESPRPTHGIHVNPKYIRQ EHSN D+      
Sbjct: 147  VLRKIEAELQFSSQVNKQSSNVNSLRASESPRPTHGIHVNPKYIRQFEHSNTDS------ 200

Query: 713  GVSSNLKLYGQQSVISYDDFDSNPSEVTSSPVGDQRLNRTGSVGRATFALRPNKLHPSSA 534
                                           VG QR N  GSVGRATFAL  NKLHPSS 
Sbjct: 201  -------------------------------VGGQRSNPAGSVGRATFALGANKLHPSST 229

Query: 533  SRLGRPLSPLRVGSEVDEFAVENSPRRLEGASPSHPVFDYGPGRPIRRNEDMSEWRNPNR 354
            SRLGR LSPL +GSE DEFAVENSPRRLEG SPSHPVFDYG GR I RNE++SEWRNPNR
Sbjct: 230  SRLGRSLSPLAIGSEGDEFAVENSPRRLEGTSPSHPVFDYGIGRAIGRNEEVSEWRNPNR 289

Query: 353  FETTYT-YSLSNGHGHQGPRALIDAYGSDRRASNNKPPQVGLLSINGVGKKVASRSWQNT 177
            FE+T T Y+LSNGH HQGPRALIDAYGSDRRASNNKPPQVG + ING+G KVASRSWQNT
Sbjct: 290  FESTSTSYNLSNGHEHQGPRALIDAYGSDRRASNNKPPQVGHMGINGMGNKVASRSWQNT 349

Query: 176  EEEEFDWEDMSPTLVDRGRKNDYLPSSVTPYGSIGTRSDFSKLNASSLESTIRSNHSS 3
            EEEEFDWEDMSPTL+DRGRKND+LPSSV  YGS G R DFSKLNASSLES +R+NHSS
Sbjct: 350  EEEEFDWEDMSPTLLDRGRKNDFLPSSVPLYGSTGARPDFSKLNASSLESDVRTNHSS 407


>ref|XP_006467998.1| PREDICTED: uncharacterized protein LOC102631201 isoform X3 [Citrus
            sinensis]
          Length = 941

 Score =  632 bits (1631), Expect = e-178
 Identities = 339/478 (70%), Positives = 361/478 (75%), Gaps = 4/478 (0%)
 Frame = -3

Query: 1424 MESEKILQNHRPSHS--LAFTNNNKAMPNELGQKPSTQIIDKFRALLKLREEAARVGDG- 1254
            MES KILQN RPS S  LAFTNNNKAMPNEL QKPST IIDKFRALLKLRE  ARVGDG 
Sbjct: 1    MESGKILQNPRPSPSPSLAFTNNNKAMPNELAQKPSTPIIDKFRALLKLREAEARVGDGA 60

Query: 1253 DVTLSTEEIVQLYELVLAELTFNSKPIITDLTIIAGEQRAHGDGIAEAICNRIVEVPDDQ 1074
              TLST EIVQLYE VLAELTFNSKPIITDLTIIAGEQRAHGDGIAEAIC RI+EV    
Sbjct: 61   GTTLSTNEIVQLYETVLAELTFNSKPIITDLTIIAGEQRAHGDGIAEAICTRILEV---- 116

Query: 1073 KLPSLYLLDSIVKNIGREYVRYFSSRLSEVFCEAYKQVHPEMYNSMRHLFGTWSTVFPHS 894
                                          FCEAY+QVHP++Y++M+HLFGTWSTVFP +
Sbjct: 117  ------------------------------FCEAYRQVHPDLYSAMQHLFGTWSTVFPQA 146

Query: 893  VLQKIEAELPFSSQVNKQPSNINSLRASESPRPTHGIHVNPKYIRQLEHSNPDNNIQQGR 714
            VL+KIEAEL FSSQVNKQ SN+NSLRASESPRPTHGIHVNPKYIRQ EHSN D+      
Sbjct: 147  VLRKIEAELQFSSQVNKQSSNVNSLRASESPRPTHGIHVNPKYIRQFEHSNTDS------ 200

Query: 713  GVSSNLKLYGQQSVISYDDFDSNPSEVTSSPVGDQRLNRTGSVGRATFALRPNKLHPSSA 534
                                           VG QR N  GSVGRATFAL  NKLHPSS 
Sbjct: 201  -------------------------------VGGQRSNPAGSVGRATFALGANKLHPSST 229

Query: 533  SRLGRPLSPLRVGSEVDEFAVENSPRRLEGASPSHPVFDYGPGRPIRRNEDMSEWRNPNR 354
            SRLGR LSPL +GSE DEFAVENSPRRLEG SPSHPVFDYG GR I RNE++SEWRNPNR
Sbjct: 230  SRLGRSLSPLAIGSEGDEFAVENSPRRLEGTSPSHPVFDYGIGRAIGRNEEVSEWRNPNR 289

Query: 353  FETTYT-YSLSNGHGHQGPRALIDAYGSDRRASNNKPPQVGLLSINGVGKKVASRSWQNT 177
            FE+T T Y+LSNGH HQGPRALIDAYGSDRRASNNKPPQVG + ING+G KVASRSWQNT
Sbjct: 290  FESTSTSYNLSNGHEHQGPRALIDAYGSDRRASNNKPPQVGHMGINGMGNKVASRSWQNT 349

Query: 176  EEEEFDWEDMSPTLVDRGRKNDYLPSSVTPYGSIGTRSDFSKLNASSLESTIRSNHSS 3
            EEEEFDWEDMSPTL+DRGRKND+LPSSV  YGS G R DFSKLNASSLES +R+NHSS
Sbjct: 350  EEEEFDWEDMSPTLLDRGRKNDFLPSSVPLYGSTGARPDFSKLNASSLESDVRTNHSS 407


>ref|XP_012091393.1| PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha
            curcas] gi|643703717|gb|KDP20781.1| hypothetical protein
            JCGZ_21252 [Jatropha curcas]
          Length = 1029

 Score =  588 bits (1517), Expect = e-165
 Identities = 319/499 (63%), Positives = 374/499 (74%), Gaps = 25/499 (5%)
 Frame = -3

Query: 1424 MESEKILQNHRPSHSLAFTNNNKAMPNELGQKPSTQIIDKFRALLKLREEAARVGDGD-- 1251
            MES K+LQN R   S A T  +    NEL QK +  ++D+FRALLK REE ARV   D  
Sbjct: 1    MESGKVLQNPRFPTSSAKTMAS----NELSQKTTPSLLDRFRALLKQREEEARVSAEDDD 56

Query: 1250 ---VTLSTEEIVQLYELVLAELTFNSKPIITDLTIIAGEQRAHGDGIAEAICNRIVEVPD 1080
                TLS EEIVQLYELVL ELTFNSKPIITDLTIIAGE R  G+GIA+AIC RI+EVP 
Sbjct: 57   AAGPTLSAEEIVQLYELVLDELTFNSKPIITDLTIIAGELREQGEGIADAICARIIEVPV 116

Query: 1079 DQKLPSLYLLDSIVKNIGREYVRYFSSRLSEVFCEAYKQVHPEMYNSMRHLFGTWSTVFP 900
            +QKLPSLYLLDSIVKNIGR+YVRYFS+RL EVFCEAY+QVHP +Y SMRHLFGTWS+VFP
Sbjct: 117  EQKLPSLYLLDSIVKNIGRDYVRYFSTRLPEVFCEAYRQVHPNLYPSMRHLFGTWSSVFP 176

Query: 899  HSVLQKIEAELPFSSQVNKQPSNINSLRASESPRPTHGIHVNPKYIRQLEHSNPDNNIQQ 720
             SVL KIE +L FS QVN Q S ++SL+AS+SPRPTHGIHVNPKY+RQLE+S  DNN QQ
Sbjct: 177  PSVLGKIETQLQFSPQVNSQSSGLSSLKASDSPRPTHGIHVNPKYLRQLENSTSDNNAQQ 236

Query: 719  G-RGVSSNLKLYGQQSVISYDDFDSNPSEVTSSPVGDQRLN---RTGSVGRATFALRPNK 552
              RG SS LK+YGQ+  I+YD++DS+ +EVTSS VG QRLN     G+VG  +F L  NK
Sbjct: 237  HVRGASSTLKVYGQKPAIAYDEYDSDHAEVTSSQVGAQRLNTVGTVGTVGHTSFMLGANK 296

Query: 551  LHPSSASRLGRPLSPLRVG------SEVDEFAVENSPRR-LEGASPSHPVFDYGPGRPIR 393
            L+ SS+SRL R  +P  VG      SEVD+FA+ NSPRR +EGASPSHP+FDYGP RPI 
Sbjct: 297  LYASSSSRLARH-APSSVGAERPLPSEVDDFAMGNSPRRFVEGASPSHPLFDYGPSRPIA 355

Query: 392  RNEDMSEWRN-------PNRFETTYTYSLSNGHGHQGPRALIDAYGSDRRA--SNNKPPQ 240
            R+E+ ++WR         NR ET+  YSLSNGH HQGPRALIDAYG D+R+  SN+KP Q
Sbjct: 356  RDEETTDWRRKHYSDDIQNRLETSVAYSLSNGHEHQGPRALIDAYGEDKRSRVSNSKPLQ 415

Query: 239  VGLLSINGVGKKVASRSWQNTEEEEFDWEDMSPTLVDRGRKNDYLPSSVTPYGSIGTRSD 60
            +  L ++G+  KVA R WQNTEEEEFDWEDMSPTL DR R ND+L SSV P+G +GTR  
Sbjct: 416  IDRLDVDGMVNKVAPRLWQNTEEEEFDWEDMSPTLADRNRSNDFLSSSVPPFGGVGTRPG 475

Query: 59   FSKLNASSLESTIRSNHSS 3
            F     S L+S IRSN S+
Sbjct: 476  FGTRGPSQLDSDIRSNRSA 494


>ref|XP_011037706.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
            X5 [Populus euphratica]
          Length = 1035

 Score =  539 bits (1389), Expect = e-150
 Identities = 291/495 (58%), Positives = 355/495 (71%), Gaps = 21/495 (4%)
 Frame = -3

Query: 1424 MESEKILQNHRPSHSLAFTNNNKAMPNEL-GQKPS-TQIIDKFRALLKLREEAARVGDGD 1251
            M+  K+L     + + A       MPNEL  QKPS + ++DKFR+LLK R+ +A   DG 
Sbjct: 1    MQPTKLLNPKTATKAAAAAAVTTTMPNELLPQKPSASSVLDKFRSLLKQRQGSAVEDDGG 60

Query: 1250 ---VTLSTEEIVQLYELVLAELTFNSKPIITDLTIIAGEQRAHGDGIAEAICNRIVEVPD 1080
                +LS E++V++YE VL ELTFNSKPIITDLTIIAGEQR HG+GIA+ +C RIVE P 
Sbjct: 61   GDGASLSMEDVVEIYETVLNELTFNSKPIITDLTIIAGEQREHGEGIADVLCARIVEAPV 120

Query: 1079 DQKLPSLYLLDSIVKNIGREYVRYFSSRLSEVFCEAYKQVHPEMYNSMRHLFGTWSTVFP 900
            DQKLPSLYLLDSIVKNIGREY+R+FSSRL EVFCEAY+QV P +Y SMRHLFGTWS+VFP
Sbjct: 121  DQKLPSLYLLDSIVKNIGREYIRHFSSRLPEVFCEAYRQVDPSLYPSMRHLFGTWSSVFP 180

Query: 899  HSVLQKIEAELPFSSQVNKQPSNINSLRASESPRPTHGIHVNPKYIRQLEHSNPDNNIQQ 720
             SVL KIE +L FS QVN Q S++ S RASESPRP HGIHVNPKY+RQL+HS  DNN+Q 
Sbjct: 181  SSVLHKIETQLDFSPQVNNQSSSLTSFRASESPRPPHGIHVNPKYLRQLDHSTADNNVQH 240

Query: 719  GRGVSSNLKLYGQQSVISYDDFDSNPSEVTSSPVGDQRLNRTGSVGRATFALRPNKLHPS 540
             +G +SNLK+YG++  + YD+++S+ +E  SS VG         +GR +  L  NKL PS
Sbjct: 241  TKG-TSNLKIYGKKPAVGYDEYESDQAEAISSQVG---------MGRTSLILGSNKLQPS 290

Query: 539  SASRLGRPLSPLRVG------SEVDEFAVENSPRR-LEGASPSHPVFDYGPGRPIRRNED 381
            S SRL R L PL  G      SE+D+ AV NSPRR +EG SPS P+FDYG  R I R+E+
Sbjct: 291  STSRLARRLLPLTTGAERPLSSEIDDLAVGNSPRRFVEGLSPSRPLFDYGHSRTIVRDEE 350

Query: 380  MSEWR-------NPNRFETTYTYSLSNGHGHQGPRALIDAYGSDR--RASNNKPPQVGLL 228
             +E R       N NRFE +  Y LSNG  HQGPRALIDAYG DR  R +++KP  +  L
Sbjct: 351  ANELRRNNYSDDNHNRFEPSARYRLSNGLEHQGPRALIDAYGDDRGKRITSSKPLHIEQL 410

Query: 227  SINGVGKKVASRSWQNTEEEEFDWEDMSPTLVDRGRKNDYLPSSVTPYGSIGTRSDFSKL 48
            ++NG+  KVASRSWQNTEEEEFDWEDMSPTL + GR ND+LPSS+ P+GS+  R  F +L
Sbjct: 411  AVNGMHNKVASRSWQNTEEEEFDWEDMSPTLSEHGRTNDFLPSSIPPFGSVVPRPAFGRL 470

Query: 47   NASSLESTIRSNHSS 3
            +A   ES IRSN SS
Sbjct: 471  SAIHAESDIRSNRSS 485


>ref|XP_002518518.1| conserved hypothetical protein [Ricinus communis]
            gi|223542363|gb|EEF43905.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 1023

 Score =  532 bits (1370), Expect = e-148
 Identities = 302/499 (60%), Positives = 355/499 (71%), Gaps = 26/499 (5%)
 Frame = -3

Query: 1424 MESEKILQNHRPSHSLAFTNNNKA-MP-NELGQKPSTQIIDKFRALLKLREEAARVG--D 1257
            M+SEKILQN R +     TN+ K  MP N+L QK    ++D+F+ LLK +EE ARV   D
Sbjct: 1    MDSEKILQNPRLN-----TNSIKPIMPSNDLSQKQPPSLLDRFKVLLKQKEEQARVSMED 55

Query: 1256 GDV----TLSTEEIVQLYELVLAELTFNSKPIITDLTIIAGEQRAHGDGIAEAICNRIVE 1089
             DV    TLS+EEIVQLYELVL ELTFNSKPIITDLTIIAGE R HG GIA+AIC RIVE
Sbjct: 56   DDVAGTSTLSSEEIVQLYELVLDELTFNSKPIITDLTIIAGELREHGAGIADAICARIVE 115

Query: 1088 VPDDQKLPSLYLLDSIVKNIGREYVRYFSSRLSEVFCEAYKQVHPEMYNSMRHLFGTWST 909
            VP DQKLPSLYLLDSIVKNIGR+YVR+FSSRL EVFC AYKQVHP ++ SMRHLF TWST
Sbjct: 116  VPVDQKLPSLYLLDSIVKNIGRDYVRHFSSRLPEVFCAAYKQVHPNLHTSMRHLFRTWST 175

Query: 908  VFPHSVLQKIEAELPFSSQV--NKQPSNINSLRASESPRPTHGIHVNPKYIRQLEHSNPD 735
            VFP SVL KIE++L FSSQ   N   S ++SL+AS+SPR T+ IHVNPKY+R LE S  +
Sbjct: 176  VFPPSVLSKIESQLQFSSQANNNNHSSGLSSLKASDSPRTTNVIHVNPKYVR-LEPSPSE 234

Query: 734  NNIQQGRGVSSNLKLYGQQSVISYDDFDSNPSEVTSSPVGDQRLNRTGSVGRATFALRPN 555
            N+ Q  RG SS LK++G +  I  D+FDS+  EVT S VG QRLN  G+ G ++F   PN
Sbjct: 235  NSAQHVRGASSTLKVHGHKPYIGCDEFDSDHVEVTPSKVGAQRLNTMGNTGPSSFVHGPN 294

Query: 554  KLHPSSASRLGRPLSPLRVG------SEVDEFAVENSPRR-LEGASPSHPVFDYGPGRPI 396
            +LHP S+SRL R LSP R+G      SEVD+F   NSPRR LEGASPSHPV D GP R +
Sbjct: 295  RLHPPSSSRLTRRLSPSRIGAERPLPSEVDDFMAGNSPRRFLEGASPSHPVLDCGPLRSM 354

Query: 395  RRNEDMSEWR-------NPNRFETTYTYSLSNGHGHQGPRALIDAYGSD--RRASNNKPP 243
             R+E+ +EWR       N  +FE +  Y+LSNGH HQGPRALIDAYG D  +R  N+K  
Sbjct: 355  GRDEETNEWRRKHYSDDNHKKFEASIAYNLSNGHEHQGPRALIDAYGEDKRKRIPNSKHL 414

Query: 242  QVGLLSINGVGKKVASRSWQNTEEEEFDWEDMSPTLVDRGRKNDYLPSSVTPYGSIGTRS 63
            Q+  L ++G   KV  RSWQNTEEEEFDWEDMSPTL+DR R N  L  SV P+G  G R 
Sbjct: 415  QIERLDVDGTANKVGPRSWQNTEEEEFDWEDMSPTLIDRSRSNGLL-LSVPPFGGAGARP 473

Query: 62   DFSKLNASSLESTIRSNHS 6
             F    AS L+S +RS  S
Sbjct: 474  GFGTRAASRLDSDLRSKQS 492


>ref|XP_011037705.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
            X4 [Populus euphratica]
          Length = 1051

 Score =  528 bits (1360), Expect = e-147
 Identities = 291/513 (56%), Positives = 355/513 (69%), Gaps = 39/513 (7%)
 Frame = -3

Query: 1424 MESEKILQNHRPSHSLAFTNNNKAMPNEL-GQKPS-TQIIDKFRALLKLREEAARVGDGD 1251
            M+  K+L     + + A       MPNEL  QKPS + ++DKFR+LLK R+ +A   DG 
Sbjct: 1    MQPTKLLNPKTATKAAAAAAVTTTMPNELLPQKPSASSVLDKFRSLLKQRQGSAVEDDGG 60

Query: 1250 ---VTLSTEEIVQLYELVLAELTFNSKPIITDLTIIAGEQRAHGDGIAEAICNRIVEVPD 1080
                +LS E++V++YE VL ELTFNSKPIITDLTIIAGEQR HG+GIA+ +C RIVE P 
Sbjct: 61   GDGASLSMEDVVEIYETVLNELTFNSKPIITDLTIIAGEQREHGEGIADVLCARIVEAPV 120

Query: 1079 DQKLPSLYLLDSIVKNIGREYVRYFSSRLSEVFCEAYKQVHPEMYNSMRHLFGTWSTVFP 900
            DQKLPSLYLLDSIVKNIGREY+R+FSSRL EVFCEAY+QV P +Y SMRHLFGTWS+VFP
Sbjct: 121  DQKLPSLYLLDSIVKNIGREYIRHFSSRLPEVFCEAYRQVDPSLYPSMRHLFGTWSSVFP 180

Query: 899  HSVLQKIEAELPFSSQVNKQPSNINSLRASESPRPTHGIHVNPKYIRQLEHSNPDN---- 732
             SVL KIE +L FS QVN Q S++ S RASESPRP HGIHVNPKY+RQL+HS  DN    
Sbjct: 181  SSVLHKIETQLDFSPQVNNQSSSLTSFRASESPRPPHGIHVNPKYLRQLDHSTADNTGWS 240

Query: 731  --------------NIQQGRGVSSNLKLYGQQSVISYDDFDSNPSEVTSSPVGDQRLNRT 594
                          N+Q  +G +SNLK+YG++  + YD+++S+ +E  SS VG       
Sbjct: 241  ILTSKAKNVIQSLQNVQHTKG-TSNLKIYGKKPAVGYDEYESDQAEAISSQVG------- 292

Query: 593  GSVGRATFALRPNKLHPSSASRLGRPLSPLRVG------SEVDEFAVENSPRR-LEGASP 435
              +GR +  L  NKL PSS SRL R L PL  G      SE+D+ AV NSPRR +EG SP
Sbjct: 293  --MGRTSLILGSNKLQPSSTSRLARRLLPLTTGAERPLSSEIDDLAVGNSPRRFVEGLSP 350

Query: 434  SHPVFDYGPGRPIRRNEDMSEWR-------NPNRFETTYTYSLSNGHGHQGPRALIDAYG 276
            S P+FDYG  R I R+E+ +E R       N NRFE +  Y LSNG  HQGPRALIDAYG
Sbjct: 351  SRPLFDYGHSRTIVRDEEANELRRNNYSDDNHNRFEPSARYRLSNGLEHQGPRALIDAYG 410

Query: 275  SDR--RASNNKPPQVGLLSINGVGKKVASRSWQNTEEEEFDWEDMSPTLVDRGRKNDYLP 102
             DR  R +++KP  +  L++NG+  KVASRSWQNTEEEEFDWEDMSPTL + GR ND+LP
Sbjct: 411  DDRGKRITSSKPLHIEQLAVNGMHNKVASRSWQNTEEEEFDWEDMSPTLSEHGRTNDFLP 470

Query: 101  SSVTPYGSIGTRSDFSKLNASSLESTIRSNHSS 3
            SS+ P+GS+  R  F +L+A   ES IRSN SS
Sbjct: 471  SSIPPFGSVVPRPAFGRLSAIHAESDIRSNRSS 503


>ref|XP_011037702.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform
            X1 [Populus euphratica] gi|743885952|ref|XP_011037703.1|
            PREDICTED: polyadenylation and cleavage factor homolog
            4-like isoform X2 [Populus euphratica]
            gi|743885954|ref|XP_011037704.1| PREDICTED:
            polyadenylation and cleavage factor homolog 4-like
            isoform X3 [Populus euphratica]
          Length = 1053

 Score =  528 bits (1360), Expect = e-147
 Identities = 291/513 (56%), Positives = 355/513 (69%), Gaps = 39/513 (7%)
 Frame = -3

Query: 1424 MESEKILQNHRPSHSLAFTNNNKAMPNEL-GQKPS-TQIIDKFRALLKLREEAARVGDGD 1251
            M+  K+L     + + A       MPNEL  QKPS + ++DKFR+LLK R+ +A   DG 
Sbjct: 1    MQPTKLLNPKTATKAAAAAAVTTTMPNELLPQKPSASSVLDKFRSLLKQRQGSAVEDDGG 60

Query: 1250 ---VTLSTEEIVQLYELVLAELTFNSKPIITDLTIIAGEQRAHGDGIAEAICNRIVEVPD 1080
                +LS E++V++YE VL ELTFNSKPIITDLTIIAGEQR HG+GIA+ +C RIVE P 
Sbjct: 61   GDGASLSMEDVVEIYETVLNELTFNSKPIITDLTIIAGEQREHGEGIADVLCARIVEAPV 120

Query: 1079 DQKLPSLYLLDSIVKNIGREYVRYFSSRLSEVFCEAYKQVHPEMYNSMRHLFGTWSTVFP 900
            DQKLPSLYLLDSIVKNIGREY+R+FSSRL EVFCEAY+QV P +Y SMRHLFGTWS+VFP
Sbjct: 121  DQKLPSLYLLDSIVKNIGREYIRHFSSRLPEVFCEAYRQVDPSLYPSMRHLFGTWSSVFP 180

Query: 899  HSVLQKIEAELPFSSQVNKQPSNINSLRASESPRPTHGIHVNPKYIRQLEHSNPDN---- 732
             SVL KIE +L FS QVN Q S++ S RASESPRP HGIHVNPKY+RQL+HS  DN    
Sbjct: 181  SSVLHKIETQLDFSPQVNNQSSSLTSFRASESPRPPHGIHVNPKYLRQLDHSTADNTGWS 240

Query: 731  --------------NIQQGRGVSSNLKLYGQQSVISYDDFDSNPSEVTSSPVGDQRLNRT 594
                          N+Q  +G +SNLK+YG++  + YD+++S+ +E  SS VG       
Sbjct: 241  ILTSKAKNVIQSLQNVQHTKG-TSNLKIYGKKPAVGYDEYESDQAEAISSQVG------- 292

Query: 593  GSVGRATFALRPNKLHPSSASRLGRPLSPLRVG------SEVDEFAVENSPRR-LEGASP 435
              +GR +  L  NKL PSS SRL R L PL  G      SE+D+ AV NSPRR +EG SP
Sbjct: 293  --MGRTSLILGSNKLQPSSTSRLARRLLPLTTGAERPLSSEIDDLAVGNSPRRFVEGLSP 350

Query: 434  SHPVFDYGPGRPIRRNEDMSEWR-------NPNRFETTYTYSLSNGHGHQGPRALIDAYG 276
            S P+FDYG  R I R+E+ +E R       N NRFE +  Y LSNG  HQGPRALIDAYG
Sbjct: 351  SRPLFDYGHSRTIVRDEEANELRRNNYSDDNHNRFEPSARYRLSNGLEHQGPRALIDAYG 410

Query: 275  SDR--RASNNKPPQVGLLSINGVGKKVASRSWQNTEEEEFDWEDMSPTLVDRGRKNDYLP 102
             DR  R +++KP  +  L++NG+  KVASRSWQNTEEEEFDWEDMSPTL + GR ND+LP
Sbjct: 411  DDRGKRITSSKPLHIEQLAVNGMHNKVASRSWQNTEEEEFDWEDMSPTLSEHGRTNDFLP 470

Query: 101  SSVTPYGSIGTRSDFSKLNASSLESTIRSNHSS 3
            SS+ P+GS+  R  F +L+A   ES IRSN SS
Sbjct: 471  SSIPPFGSVVPRPAFGRLSAIHAESDIRSNRSS 503


>ref|XP_002316604.2| pre-mRNA cleavage complex-related family protein [Populus
            trichocarpa] gi|550327247|gb|EEE97216.2| pre-mRNA
            cleavage complex-related family protein [Populus
            trichocarpa]
          Length = 1031

 Score =  522 bits (1345), Expect = e-145
 Identities = 288/492 (58%), Positives = 353/492 (71%), Gaps = 18/492 (3%)
 Frame = -3

Query: 1424 MESEKILQNHRPSHSLAFTNNNKAMPNEL--GQKPSTQIIDKFRALLKLREEAARVGDGD 1251
            M+S K+L     + +     N   MPNEL   + P++ I+DKFR LLK R+++A    G 
Sbjct: 1    MQSTKLLNPKTATKAAEAVTNT--MPNELLPQKSPASSIMDKFRYLLKQRQQSAVEEGGG 58

Query: 1250 VTLSTEEIVQLYELVLAELTFNSKPIITDLTIIAGEQRAHGDGIAEAICNRIVEVPDDQK 1071
              LSTE++V++YE VL ELTFNSKPIITDLTIIAGE R HG+GIA+A+C RIVEVP D K
Sbjct: 59   --LSTEDMVEIYETVLNELTFNSKPIITDLTIIAGELREHGEGIADALCGRIVEVPVDLK 116

Query: 1070 LPSLYLLDSIVKNIGREYVRYFSSRLSEVFCEAYKQVHPEMYNSMRHLFGTWSTVFPHSV 891
            LPSLYLLDSIVKNIGREY+ YFSSRL EVFCEAY QV P +Y SMRHLFGTWS+VFP SV
Sbjct: 117  LPSLYLLDSIVKNIGREYIGYFSSRLPEVFCEAYGQVDPRLYPSMRHLFGTWSSVFPSSV 176

Query: 890  LQKIEAELPFSSQVNKQPSNINSLRASESPRPTHGIHVNPKYIRQLEHSNPDNNIQQGRG 711
            L+KIE +L  SSQ+N Q S++ SL+ASESPRP+HGIHVNPKY+RQ++ S+ DNN+Q  +G
Sbjct: 177  LRKIETQLQLSSQINNQSSSLTSLKASESPRPSHGIHVNPKYLRQMD-SSRDNNVQHTKG 235

Query: 710  VSSNLKLYGQQSVISYDDFDSNPSEVTSSPVGDQRLNRTGSVGRATFALRPNKLHPSSAS 531
             +SNLK+YG +  + YD+++++ +EV SS VG         V RA+  L  NKL PSS S
Sbjct: 236  -TSNLKMYGHKPAVGYDEYETDQAEVISSQVG---------VDRASLTLGSNKLQPSSTS 285

Query: 530  RLGRPLSPLRVG------SEVDEFAVENSPRR-LEGASPSHPVFDYGPGRPIRRNEDMSE 372
            RL R LSP   G      SE+D+FA  NSPRR +EG SPSHP FDYG GR + R+++ +E
Sbjct: 286  RLARRLSPSTTGAERPSSSEIDDFAAGNSPRRFVEGLSPSHPPFDYGHGRVVVRDDETNE 345

Query: 371  WR-------NPNRFETTYTYSLSNGHGHQGPRALIDAYGSDR--RASNNKPPQVGLLSIN 219
             R       N  RFE +   SLSNGH  QGPRALIDAYG DR  R  N+KP  +  L++ 
Sbjct: 346  LRRKHYSDDNHYRFEAS-ARSLSNGHEQQGPRALIDAYGDDRGKRIPNSKPLHIEQLAVI 404

Query: 218  GVGKKVASRSWQNTEEEEFDWEDMSPTLVDRGRKNDYLPSSVTPYGSIGTRSDFSKLNAS 39
            G+  KVA RSWQNTEEEEFDWEDMSPTL+DRGR ND+LP SV P+GS+  R  F +LNA 
Sbjct: 405  GMHNKVAPRSWQNTEEEEFDWEDMSPTLLDRGRSNDFLPPSVPPFGSVVPRPGFGRLNAI 464

Query: 38   SLESTIRSNHSS 3
              +S IRSN SS
Sbjct: 465  RADSDIRSNGSS 476


>ref|XP_007026008.1| PCF11P-similar protein 4, putative isoform 1 [Theobroma cacao]
            gi|508781374|gb|EOY28630.1| PCF11P-similar protein 4,
            putative isoform 1 [Theobroma cacao]
          Length = 1004

 Score =  518 bits (1333), Expect = e-144
 Identities = 281/468 (60%), Positives = 335/468 (71%), Gaps = 25/468 (5%)
 Frame = -3

Query: 1352 MPNELGQKPSTQIIDKFRALLKLREEAARVGDGD-------VTLSTEEIVQLYELVLAEL 1194
            M NEL QK    I ++F+ALLK RE+  RV  GD        T S  EIVQLYE VL+EL
Sbjct: 1    MSNELAQKQQPSISERFKALLKQREDDLRVSGGDDGDDEVAATPSRGEIVQLYEAVLSEL 60

Query: 1193 TFNSKPIITDLTIIAGEQRAHGDGIAEAICNRIVEVPDDQKLPSLYLLDSIVKNIGREYV 1014
            TFNSKPIITDLTIIAGEQR HG+GIA+AIC RI+EVP +QKLPSLYLLDSIVKNIGREYV
Sbjct: 61   TFNSKPIITDLTIIAGEQREHGEGIADAICARILEVPVEQKLPSLYLLDSIVKNIGREYV 120

Query: 1013 RYFSSRLSEVFCEAYKQVHPEMYNSMRHLFGTWSTVFPHSVLQKIEAELPFSSQVNKQPS 834
            R+FSSRL EVFCEAY+QV+P +Y +MRHLFGTWSTVFP SVL+KIE +L FS   N+Q  
Sbjct: 121  RHFSSRLPEVFCEAYRQVNPNLYPAMRHLFGTWSTVFPPSVLRKIEIQLQFSQSANQQSP 180

Query: 833  NINSLRASESPRPTHGIHVNPKYIRQLE-HSNPDNNIQQGRGVSSNLKLYGQQSVISYDD 657
             + SLR+SESPRPTHGIHVNPKY+RQLE  S  D+N Q  RG S+ LK+YGQ+  I +D+
Sbjct: 181  GVTSLRSSESPRPTHGIHVNPKYLRQLEQQSGADSNTQHVRGTSAALKVYGQKHSIGFDE 240

Query: 656  FDSNPSEVTSSPVGDQRLNRTGSVGRATFALRPNKLHPSSASRLGRPLSPLRVG------ 495
            FDS+ +EV SS VG +RL  TG+VGR +  +  NK    SAS + RP SP R+G      
Sbjct: 241  FDSDHTEVPSSHVGVRRLRSTGNVGRTSVVVGANK----SASIVSRPFSPSRIGSDRLVL 296

Query: 494  SEVDEFAVENSPRR-LEGASPSHPVFDYGPGRPIRRNEDMSEWRNPNRFETTY------- 339
            SEVD+   + SPRR +EG SPS PVFDYG GR I R+E+  EW+  + ++  +       
Sbjct: 297  SEVDDLPSDGSPRRFVEGTSPSRPVFDYGRGRAIVRDEETREWQRKHSYDDYHNRSESSL 356

Query: 338  -TYSLSNGHGHQGPRALIDAYGSDR--RASNNKPPQVGLLSINGVGKKVASRSWQNTEEE 168
              Y LSNGH  Q PRALIDAYG+DR    SN+KP QV  L++NG+G KV   SWQNTEEE
Sbjct: 357  NAYKLSNGHERQTPRALIDAYGNDRGKGISNSKPAQVERLAVNGMGNKVTPISWQNTEEE 416

Query: 167  EFDWEDMSPTLVDRGRKNDYLPSSVTPYGSIGTRSDFSKLNASSLEST 24
            EFDWEDMSPTL DR R ND+  SSV P+GSIG R    + N+ S  +T
Sbjct: 417  EFDWEDMSPTLADRSRSNDFSLSSVPPFGSIGERPAGLESNSRSSRAT 464


>ref|XP_010655357.1| PREDICTED: polyadenylation and cleavage factor homolog 4 [Vitis
            vinifera]
          Length = 1046

 Score =  510 bits (1313), Expect = e-141
 Identities = 274/467 (58%), Positives = 341/467 (73%), Gaps = 19/467 (4%)
 Frame = -3

Query: 1370 TNNNKAMPNELGQKPSTQIIDKFRALLKLREEAARVGDGDVTL--STEEIVQLYELVLAE 1197
            T   K M NE+ QKP   I+D+F+ALLK RE+  RV  GD     +TEEIV+LYE+VL+E
Sbjct: 30   TATAKPMSNEISQKPLVPIVDRFKALLKQREDELRVLSGDDVPPPTTEEIVRLYEIVLSE 89

Query: 1196 LTFNSKPIITDLTIIAGEQRAHGDGIAEAICNRIVEVPDDQKLPSLYLLDSIVKNIGREY 1017
            L FNSKPIITDLTIIAG+ + H DGIA+AIC RIVEV  +QKLPSLYLLDSIVKNIGR+Y
Sbjct: 90   LIFNSKPIITDLTIIAGDHKEHADGIADAICARIVEVSVEQKLPSLYLLDSIVKNIGRDY 149

Query: 1016 VRYFSSRLSEVFCEAYKQVHPEMYNSMRHLFGTWSTVFPHSVLQKIEAELPFSSQVNKQP 837
            +++FSSRL EVFCEAY+QVHP +Y +MRHLFGTWS VFP SVL+KIEA+L FS  +N Q 
Sbjct: 150  IKHFSSRLPEVFCEAYRQVHPNLYTAMRHLFGTWSAVFPPSVLRKIEAQLQFSPTLNNQS 209

Query: 836  SNINSLRASESPRPTHGIHVNPKYI---RQLEHSNPDNNIQQGRGVSSNLKLYGQQSVIS 666
            S + SLRASESPRPTH IHVNPKY+    Q EHS  D+N+Q  RG SS LK+YGQ+  I 
Sbjct: 210  SGMASLRASESPRPTHSIHVNPKYLEARHQFEHSPVDSNMQHSRGTSSTLKVYGQKPAIG 269

Query: 665  YDDFDSNPSEVTSSPVGDQRLNRTGSVGRATFALRPNKLHPSSASRLGRPLSPLRVGS-- 492
            YD++DS  +EV SS    QRLN TGSVGR  FAL  +KL PSS +R+ +  SP R+G+  
Sbjct: 270  YDEYDSGHTEVISSQARAQRLNSTGSVGRTPFALGADKLLPSSTARVAKSTSP-RIGTAG 328

Query: 491  ----EVDEFAVENSPRR-LEGASPSHPVFDYGPGRPIRRNEDMSE-----WRNPNRFETT 342
                  ++F+++NSPRR +E ASPSH  F+YG  R + R+E+ S+     W N +RFET+
Sbjct: 329  SSSPPAEKFSMDNSPRRVVERASPSHRGFEYGLVRSMGRDEETSDRQRKHWSN-DRFETS 387

Query: 341  YTYSLSNGHGHQGPRALIDAYGSDR--RASNNKPPQVGLLSINGVGKKVASRSWQNTEEE 168
              ++LSNG   QG RALIDAYG+DR  R  N+KPP+VG L +NG   KV  ++WQNTEEE
Sbjct: 388  AAHNLSNGRERQGLRALIDAYGNDRGQRTLNDKPPKVGHLDMNGTDNKVPKKAWQNTEEE 447

Query: 167  EFDWEDMSPTLVDRGRKNDYLPSSVTPYGSIGTRSDFSKLNASSLES 27
            E+DWEDM+PTL +R + N+ L SSV+P+GS  TR     L A+ LES
Sbjct: 448  EYDWEDMNPTLANRRQCNNILQSSVSPFGSFRTRPGSGALGAAPLES 494


>emb|CBI23183.3| unnamed protein product [Vitis vinifera]
          Length = 1003

 Score =  510 bits (1313), Expect = e-141
 Identities = 274/467 (58%), Positives = 341/467 (73%), Gaps = 19/467 (4%)
 Frame = -3

Query: 1370 TNNNKAMPNELGQKPSTQIIDKFRALLKLREEAARVGDGDVTL--STEEIVQLYELVLAE 1197
            T   K M NE+ QKP   I+D+F+ALLK RE+  RV  GD     +TEEIV+LYE+VL+E
Sbjct: 70   TATAKPMSNEISQKPLVPIVDRFKALLKQREDELRVLSGDDVPPPTTEEIVRLYEIVLSE 129

Query: 1196 LTFNSKPIITDLTIIAGEQRAHGDGIAEAICNRIVEVPDDQKLPSLYLLDSIVKNIGREY 1017
            L FNSKPIITDLTIIAG+ + H DGIA+AIC RIVEV  +QKLPSLYLLDSIVKNIGR+Y
Sbjct: 130  LIFNSKPIITDLTIIAGDHKEHADGIADAICARIVEVSVEQKLPSLYLLDSIVKNIGRDY 189

Query: 1016 VRYFSSRLSEVFCEAYKQVHPEMYNSMRHLFGTWSTVFPHSVLQKIEAELPFSSQVNKQP 837
            +++FSSRL EVFCEAY+QVHP +Y +MRHLFGTWS VFP SVL+KIEA+L FS  +N Q 
Sbjct: 190  IKHFSSRLPEVFCEAYRQVHPNLYTAMRHLFGTWSAVFPPSVLRKIEAQLQFSPTLNNQS 249

Query: 836  SNINSLRASESPRPTHGIHVNPKYI---RQLEHSNPDNNIQQGRGVSSNLKLYGQQSVIS 666
            S + SLRASESPRPTH IHVNPKY+    Q EHS  D+N+Q  RG SS LK+YGQ+  I 
Sbjct: 250  SGMASLRASESPRPTHSIHVNPKYLEARHQFEHSPVDSNMQHSRGTSSTLKVYGQKPAIG 309

Query: 665  YDDFDSNPSEVTSSPVGDQRLNRTGSVGRATFALRPNKLHPSSASRLGRPLSPLRVGS-- 492
            YD++DS  +EV SS    QRLN TGSVGR  FAL  +KL PSS +R+ +  SP R+G+  
Sbjct: 310  YDEYDSGHTEVISSQARAQRLNSTGSVGRTPFALGADKLLPSSTARVAKSTSP-RIGTAG 368

Query: 491  ----EVDEFAVENSPRR-LEGASPSHPVFDYGPGRPIRRNEDMSE-----WRNPNRFETT 342
                  ++F+++NSPRR +E ASPSH  F+YG  R + R+E+ S+     W N +RFET+
Sbjct: 369  SSSPPAEKFSMDNSPRRVVERASPSHRGFEYGLVRSMGRDEETSDRQRKHWSN-DRFETS 427

Query: 341  YTYSLSNGHGHQGPRALIDAYGSDR--RASNNKPPQVGLLSINGVGKKVASRSWQNTEEE 168
              ++LSNG   QG RALIDAYG+DR  R  N+KPP+VG L +NG   KV  ++WQNTEEE
Sbjct: 428  AAHNLSNGRERQGLRALIDAYGNDRGQRTLNDKPPKVGHLDMNGTDNKVPKKAWQNTEEE 487

Query: 167  EFDWEDMSPTLVDRGRKNDYLPSSVTPYGSIGTRSDFSKLNASSLES 27
            E+DWEDM+PTL +R + N+ L SSV+P+GS  TR     L A+ LES
Sbjct: 488  EYDWEDMNPTLANRRQCNNILQSSVSPFGSFRTRPGSGALGAAPLES 534


>gb|KHG24664.1| Pre-mRNA cleavage complex 2 Pcf11 [Gossypium arboreum]
          Length = 1004

 Score =  508 bits (1309), Expect = e-141
 Identities = 280/464 (60%), Positives = 338/464 (72%), Gaps = 24/464 (5%)
 Frame = -3

Query: 1355 AMPNELGQKPSTQIIDKFRALLKLREEAARVGDG-----DVTLSTEEIVQLYELVLAELT 1191
            A+ NEL QK    I ++F+ALLK RE+  RV  G       T +TEEIVQLYE+VL+ELT
Sbjct: 2    AISNELAQKQLPSISERFKALLKQREDELRVSGGIADDDGATPTTEEIVQLYEVVLSELT 61

Query: 1190 FNSKPIITDLTIIAGEQRAHGDGIAEAICNRIVEVPDDQKLPSLYLLDSIVKNIGREYVR 1011
            FNSKPIITDLTIIAGEQR HG+GIA+AIC RI+EVP +QKLPSLYLLDSIVKNIGREYVR
Sbjct: 62   FNSKPIITDLTIIAGEQREHGEGIADAICARIIEVPVEQKLPSLYLLDSIVKNIGREYVR 121

Query: 1010 YFSSRLSEVFCEAYKQVHPEMYNSMRHLFGTWSTVFPHSVLQKIEAELPFSSQVNKQPSN 831
            YFSSRL EVFCEAY+QV+P ++ +MRHLFGTWSTVFP SVL+KIE +L FS   N+Q S 
Sbjct: 122  YFSSRLPEVFCEAYRQVNPNLHPAMRHLFGTWSTVFPPSVLRKIEMQLQFSQTGNQQSSG 181

Query: 830  INSLRASESPRPTHGIHVNPKYIRQLE-HSNPDNNIQQGRGVSSNLKLYGQQSVISYDDF 654
            + SL++SESPRPTHGIHVNPKY+RQLE  S  D+N Q  RG+S+  KLYGQ+  I+YD+F
Sbjct: 182  VTSLQSSESPRPTHGIHVNPKYLRQLEQQSGADSNTQHVRGMSAGQKLYGQKHTIAYDEF 241

Query: 653  DSNPSEVTSSPVGDQRLNRTGSVGRATFALRPNKLHPSSASRLGRPLSPLRVG------S 492
            DS+ +EV SS VG QRL+ TG+VGR + A+  NK   SSASR+ RP SP R+G      S
Sbjct: 242  DSDHTEVPSSHVGVQRLSSTGNVGRTSLAIGANKSQLSSASRVSRPFSPSRIGSDRLLSS 301

Query: 491  EVDEFAVENSPRRL-EGASPSH-PVFDYGPGRPIRRNEDMSEWRNPNRF--------ETT 342
            E+D+   ++SPRR  E ASPS  PVFD+G GR   R+E+  EW   + +         + 
Sbjct: 302  EIDDLPSDDSPRRFAEVASPSRPPVFDFGRGRGTIRDEETREWPRKHFYGDYRNCSESSL 361

Query: 341  YTYSLSNGHGHQGPRALIDAYGSDR--RASNNKPPQVGLLSINGVGKKVASRSWQNTEEE 168
              Y LSNG+  Q  RALIDAYG+DR    SN+KP QV  L +NG+G KV  RSWQNTEEE
Sbjct: 362  NAYKLSNGNERQTLRALIDAYGNDRGQGMSNSKPVQVERLDLNGMGNKVTPRSWQNTEEE 421

Query: 167  EFDWEDMSPTLVDRGRKNDYLPSSVTPYGSIGTRSDFSKLNASS 36
            EFDWEDMSPTL DR R N++  SSV+ +GSIG R    + N SS
Sbjct: 422  EFDWEDMSPTLADR-RSNEFSVSSVSTFGSIGARPAGLESNRSS 464


>ref|XP_012450329.1| PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X2
            [Gossypium raimondii]
          Length = 1001

 Score =  504 bits (1297), Expect = e-139
 Identities = 279/464 (60%), Positives = 336/464 (72%), Gaps = 24/464 (5%)
 Frame = -3

Query: 1355 AMPNELGQKPSTQIIDKFRALLKLREEAARVGDG-----DVTLSTEEIVQLYELVLAELT 1191
            A+ NEL QK    I ++F+ALLK RE+  RV  G       T +TEEIVQLYE+VL+ELT
Sbjct: 2    AISNELAQKQLPSISERFKALLKQREDELRVSGGVADDDGATPTTEEIVQLYEVVLSELT 61

Query: 1190 FNSKPIITDLTIIAGEQRAHGDGIAEAICNRIVEVPDDQKLPSLYLLDSIVKNIGREYVR 1011
            FNSKPIITDLTIIAGEQR HG+GIA+AIC RI+EVP +QKLPSLYLLDSIVKNIGREYVR
Sbjct: 62   FNSKPIITDLTIIAGEQREHGEGIADAICARIIEVPVEQKLPSLYLLDSIVKNIGREYVR 121

Query: 1010 YFSSRLSEVFCEAYKQVHPEMYNSMRHLFGTWSTVFPHSVLQKIEAELPFSSQVNKQPSN 831
            YFSSRL EVFCEAY+QV+P ++ +MRHLFGTWSTVFP SVL+KIE +L FS   N+Q S 
Sbjct: 122  YFSSRLPEVFCEAYRQVNPNLHPAMRHLFGTWSTVFPPSVLRKIEMQLQFSQTGNQQSSG 181

Query: 830  INSLRASESPRPTHGIHVNPKYIRQLE-HSNPDNNIQQGRGVSSNLKLYGQQSVISYDDF 654
            + SL++SESPRPTHGIHVNPKY+RQ E  S  D+N Q  RG+S+  KLYGQ+  I+YD+F
Sbjct: 182  VTSLQSSESPRPTHGIHVNPKYLRQFEQQSGADSNTQHVRGMSAGQKLYGQKHTITYDEF 241

Query: 653  DSNPSEVTSSPVGDQRLNRTGSVGRATFALRPNKLHPSSASRLGRPLSPLRVG------S 492
            DS+ +EV SS VG QRL+ TG+VG  + A+  NK   SSASR+ RP SP R+G      S
Sbjct: 242  DSDHTEVPSSHVGVQRLSSTGNVGCTSLAIGANKSQLSSASRVSRPFSPSRIGSDRLLSS 301

Query: 491  EVDEFAVENSPRRL-EGASPSH-PVFDYGPGRPIRRNEDMSEWRNPNRF--------ETT 342
            EVD+   ++SPRR  E ASPS  PVFD+G GR   R+E+  EW   + +         + 
Sbjct: 302  EVDDLPSDDSPRRFAEVASPSRPPVFDFGRGRGTIRDEETREWPRKHFYGDYRNCSEGSL 361

Query: 341  YTYSLSNGHGHQGPRALIDAYGSDR--RASNNKPPQVGLLSINGVGKKVASRSWQNTEEE 168
             +Y LSNG+  Q  RALIDAYG+DR    SN+KP QV  L +NG+G KV  RSWQNTEEE
Sbjct: 362  NSYKLSNGNERQTLRALIDAYGNDRGQGMSNSKPVQVERLDVNGMGNKVTPRSWQNTEEE 421

Query: 167  EFDWEDMSPTLVDRGRKNDYLPSSVTPYGSIGTRSDFSKLNASS 36
            EFDWEDMSPTL DR R N++  SSV  +GSIG R    + N SS
Sbjct: 422  EFDWEDMSPTLADR-RSNEFSVSSVATFGSIGARPAGLESNRSS 464


>gb|KJB67158.1| hypothetical protein B456_010G178200 [Gossypium raimondii]
          Length = 1024

 Score =  504 bits (1297), Expect = e-139
 Identities = 279/464 (60%), Positives = 336/464 (72%), Gaps = 24/464 (5%)
 Frame = -3

Query: 1355 AMPNELGQKPSTQIIDKFRALLKLREEAARVGDG-----DVTLSTEEIVQLYELVLAELT 1191
            A+ NEL QK    I ++F+ALLK RE+  RV  G       T +TEEIVQLYE+VL+ELT
Sbjct: 2    AISNELAQKQLPSISERFKALLKQREDELRVSGGVADDDGATPTTEEIVQLYEVVLSELT 61

Query: 1190 FNSKPIITDLTIIAGEQRAHGDGIAEAICNRIVEVPDDQKLPSLYLLDSIVKNIGREYVR 1011
            FNSKPIITDLTIIAGEQR HG+GIA+AIC RI+EVP +QKLPSLYLLDSIVKNIGREYVR
Sbjct: 62   FNSKPIITDLTIIAGEQREHGEGIADAICARIIEVPVEQKLPSLYLLDSIVKNIGREYVR 121

Query: 1010 YFSSRLSEVFCEAYKQVHPEMYNSMRHLFGTWSTVFPHSVLQKIEAELPFSSQVNKQPSN 831
            YFSSRL EVFCEAY+QV+P ++ +MRHLFGTWSTVFP SVL+KIE +L FS   N+Q S 
Sbjct: 122  YFSSRLPEVFCEAYRQVNPNLHPAMRHLFGTWSTVFPPSVLRKIEMQLQFSQTGNQQSSG 181

Query: 830  INSLRASESPRPTHGIHVNPKYIRQLE-HSNPDNNIQQGRGVSSNLKLYGQQSVISYDDF 654
            + SL++SESPRPTHGIHVNPKY+RQ E  S  D+N Q  RG+S+  KLYGQ+  I+YD+F
Sbjct: 182  VTSLQSSESPRPTHGIHVNPKYLRQFEQQSGADSNTQHVRGMSAGQKLYGQKHTITYDEF 241

Query: 653  DSNPSEVTSSPVGDQRLNRTGSVGRATFALRPNKLHPSSASRLGRPLSPLRVG------S 492
            DS+ +EV SS VG QRL+ TG+VG  + A+  NK   SSASR+ RP SP R+G      S
Sbjct: 242  DSDHTEVPSSHVGVQRLSSTGNVGCTSLAIGANKSQLSSASRVSRPFSPSRIGSDRLLSS 301

Query: 491  EVDEFAVENSPRRL-EGASPSH-PVFDYGPGRPIRRNEDMSEWRNPNRF--------ETT 342
            EVD+   ++SPRR  E ASPS  PVFD+G GR   R+E+  EW   + +         + 
Sbjct: 302  EVDDLPSDDSPRRFAEVASPSRPPVFDFGRGRGTIRDEETREWPRKHFYGDYRNCSEGSL 361

Query: 341  YTYSLSNGHGHQGPRALIDAYGSDR--RASNNKPPQVGLLSINGVGKKVASRSWQNTEEE 168
             +Y LSNG+  Q  RALIDAYG+DR    SN+KP QV  L +NG+G KV  RSWQNTEEE
Sbjct: 362  NSYKLSNGNERQTLRALIDAYGNDRGQGMSNSKPVQVERLDVNGMGNKVTPRSWQNTEEE 421

Query: 167  EFDWEDMSPTLVDRGRKNDYLPSSVTPYGSIGTRSDFSKLNASS 36
            EFDWEDMSPTL DR R N++  SSV  +GSIG R    + N SS
Sbjct: 422  EFDWEDMSPTLADR-RSNEFSVSSVATFGSIGARPAGLESNRSS 464


>gb|KJB67157.1| hypothetical protein B456_010G178200 [Gossypium raimondii]
          Length = 831

 Score =  504 bits (1297), Expect = e-139
 Identities = 279/464 (60%), Positives = 336/464 (72%), Gaps = 24/464 (5%)
 Frame = -3

Query: 1355 AMPNELGQKPSTQIIDKFRALLKLREEAARVGDG-----DVTLSTEEIVQLYELVLAELT 1191
            A+ NEL QK    I ++F+ALLK RE+  RV  G       T +TEEIVQLYE+VL+ELT
Sbjct: 2    AISNELAQKQLPSISERFKALLKQREDELRVSGGVADDDGATPTTEEIVQLYEVVLSELT 61

Query: 1190 FNSKPIITDLTIIAGEQRAHGDGIAEAICNRIVEVPDDQKLPSLYLLDSIVKNIGREYVR 1011
            FNSKPIITDLTIIAGEQR HG+GIA+AIC RI+EVP +QKLPSLYLLDSIVKNIGREYVR
Sbjct: 62   FNSKPIITDLTIIAGEQREHGEGIADAICARIIEVPVEQKLPSLYLLDSIVKNIGREYVR 121

Query: 1010 YFSSRLSEVFCEAYKQVHPEMYNSMRHLFGTWSTVFPHSVLQKIEAELPFSSQVNKQPSN 831
            YFSSRL EVFCEAY+QV+P ++ +MRHLFGTWSTVFP SVL+KIE +L FS   N+Q S 
Sbjct: 122  YFSSRLPEVFCEAYRQVNPNLHPAMRHLFGTWSTVFPPSVLRKIEMQLQFSQTGNQQSSG 181

Query: 830  INSLRASESPRPTHGIHVNPKYIRQLE-HSNPDNNIQQGRGVSSNLKLYGQQSVISYDDF 654
            + SL++SESPRPTHGIHVNPKY+RQ E  S  D+N Q  RG+S+  KLYGQ+  I+YD+F
Sbjct: 182  VTSLQSSESPRPTHGIHVNPKYLRQFEQQSGADSNTQHVRGMSAGQKLYGQKHTITYDEF 241

Query: 653  DSNPSEVTSSPVGDQRLNRTGSVGRATFALRPNKLHPSSASRLGRPLSPLRVG------S 492
            DS+ +EV SS VG QRL+ TG+VG  + A+  NK   SSASR+ RP SP R+G      S
Sbjct: 242  DSDHTEVPSSHVGVQRLSSTGNVGCTSLAIGANKSQLSSASRVSRPFSPSRIGSDRLLSS 301

Query: 491  EVDEFAVENSPRRL-EGASPSH-PVFDYGPGRPIRRNEDMSEWRNPNRF--------ETT 342
            EVD+   ++SPRR  E ASPS  PVFD+G GR   R+E+  EW   + +         + 
Sbjct: 302  EVDDLPSDDSPRRFAEVASPSRPPVFDFGRGRGTIRDEETREWPRKHFYGDYRNCSEGSL 361

Query: 341  YTYSLSNGHGHQGPRALIDAYGSDR--RASNNKPPQVGLLSINGVGKKVASRSWQNTEEE 168
             +Y LSNG+  Q  RALIDAYG+DR    SN+KP QV  L +NG+G KV  RSWQNTEEE
Sbjct: 362  NSYKLSNGNERQTLRALIDAYGNDRGQGMSNSKPVQVERLDVNGMGNKVTPRSWQNTEEE 421

Query: 167  EFDWEDMSPTLVDRGRKNDYLPSSVTPYGSIGTRSDFSKLNASS 36
            EFDWEDMSPTL DR R N++  SSV  +GSIG R    + N SS
Sbjct: 422  EFDWEDMSPTLADR-RSNEFSVSSVATFGSIGARPAGLESNRSS 464


>ref|XP_012450328.1| PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X1
            [Gossypium raimondii] gi|763800201|gb|KJB67156.1|
            hypothetical protein B456_010G178200 [Gossypium
            raimondii]
          Length = 1004

 Score =  504 bits (1297), Expect = e-139
 Identities = 279/464 (60%), Positives = 336/464 (72%), Gaps = 24/464 (5%)
 Frame = -3

Query: 1355 AMPNELGQKPSTQIIDKFRALLKLREEAARVGDG-----DVTLSTEEIVQLYELVLAELT 1191
            A+ NEL QK    I ++F+ALLK RE+  RV  G       T +TEEIVQLYE+VL+ELT
Sbjct: 2    AISNELAQKQLPSISERFKALLKQREDELRVSGGVADDDGATPTTEEIVQLYEVVLSELT 61

Query: 1190 FNSKPIITDLTIIAGEQRAHGDGIAEAICNRIVEVPDDQKLPSLYLLDSIVKNIGREYVR 1011
            FNSKPIITDLTIIAGEQR HG+GIA+AIC RI+EVP +QKLPSLYLLDSIVKNIGREYVR
Sbjct: 62   FNSKPIITDLTIIAGEQREHGEGIADAICARIIEVPVEQKLPSLYLLDSIVKNIGREYVR 121

Query: 1010 YFSSRLSEVFCEAYKQVHPEMYNSMRHLFGTWSTVFPHSVLQKIEAELPFSSQVNKQPSN 831
            YFSSRL EVFCEAY+QV+P ++ +MRHLFGTWSTVFP SVL+KIE +L FS   N+Q S 
Sbjct: 122  YFSSRLPEVFCEAYRQVNPNLHPAMRHLFGTWSTVFPPSVLRKIEMQLQFSQTGNQQSSG 181

Query: 830  INSLRASESPRPTHGIHVNPKYIRQLE-HSNPDNNIQQGRGVSSNLKLYGQQSVISYDDF 654
            + SL++SESPRPTHGIHVNPKY+RQ E  S  D+N Q  RG+S+  KLYGQ+  I+YD+F
Sbjct: 182  VTSLQSSESPRPTHGIHVNPKYLRQFEQQSGADSNTQHVRGMSAGQKLYGQKHTITYDEF 241

Query: 653  DSNPSEVTSSPVGDQRLNRTGSVGRATFALRPNKLHPSSASRLGRPLSPLRVG------S 492
            DS+ +EV SS VG QRL+ TG+VG  + A+  NK   SSASR+ RP SP R+G      S
Sbjct: 242  DSDHTEVPSSHVGVQRLSSTGNVGCTSLAIGANKSQLSSASRVSRPFSPSRIGSDRLLSS 301

Query: 491  EVDEFAVENSPRRL-EGASPSH-PVFDYGPGRPIRRNEDMSEWRNPNRF--------ETT 342
            EVD+   ++SPRR  E ASPS  PVFD+G GR   R+E+  EW   + +         + 
Sbjct: 302  EVDDLPSDDSPRRFAEVASPSRPPVFDFGRGRGTIRDEETREWPRKHFYGDYRNCSEGSL 361

Query: 341  YTYSLSNGHGHQGPRALIDAYGSDR--RASNNKPPQVGLLSINGVGKKVASRSWQNTEEE 168
             +Y LSNG+  Q  RALIDAYG+DR    SN+KP QV  L +NG+G KV  RSWQNTEEE
Sbjct: 362  NSYKLSNGNERQTLRALIDAYGNDRGQGMSNSKPVQVERLDVNGMGNKVTPRSWQNTEEE 421

Query: 167  EFDWEDMSPTLVDRGRKNDYLPSSVTPYGSIGTRSDFSKLNASS 36
            EFDWEDMSPTL DR R N++  SSV  +GSIG R    + N SS
Sbjct: 422  EFDWEDMSPTLADR-RSNEFSVSSVATFGSIGARPAGLESNRSS 464