BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zanthoxylum22_contig00004048
         (3747 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1798   0.0  
gb|KDO62286.1| hypothetical protein CISIN_1g001795mg [Citrus sin...  1783   0.0  
gb|KDO62285.1| hypothetical protein CISIN_1g001795mg [Citrus sin...  1782   0.0  
ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citr...  1776   0.0  
gb|KDO62288.1| hypothetical protein CISIN_1g001795mg [Citrus sin...  1721   0.0  
ref|XP_006453567.1| hypothetical protein CICLE_v10007333mg [Citr...  1714   0.0  
gb|KDO62289.1| hypothetical protein CISIN_1g001795mg [Citrus sin...  1648   0.0  
ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isof...  1538   0.0  
ref|XP_012445978.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1525   0.0  
gb|KJB53874.1| hypothetical protein B456_009G009300 [Gossypium r...  1510   0.0  
ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prun...  1483   0.0  
ref|XP_008243031.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1479   0.0  
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1477   0.0  
ref|XP_012071554.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1476   0.0  
ref|XP_011018068.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1474   0.0  
ref|XP_002325119.1| DNA-directed RNA polymerase family protein [...  1469   0.0  
ref|XP_009366215.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1468   0.0  
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1465   0.0  
ref|XP_007013878.1| DNA/RNA polymerases superfamily protein isof...  1461   0.0  
ref|XP_011033373.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1459   0.0  

>ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Citrus
            sinensis]
          Length = 1009

 Score = 1798 bits (4657), Expect = 0.0
 Identities = 891/1011 (88%), Positives = 933/1011 (92%)
 Frame = -1

Query: 3612 MASAASISQIQYPXXXXXXXXXXXXXTLNIFNTKRDDKSFKSLHFLHXXXXXXXXXXXXX 3433
            MASAASISQIQYP              LNIFNTKRDD S K LHFLH             
Sbjct: 1    MASAASISQIQYPPTCTTSTTTATRKALNIFNTKRDDGSSKILHFLHSCSSSSSSSSFPV 60

Query: 3432 XXXXXXXSANPIRLCPLQDSLHSNFMENIENSGNFHLPSSEKDKIVHQRVEQIETFSDLG 3253
                    +NP RL PLQDS+ SNFMENIENS +FH+P+ E+++I HQRVE  ET +DL 
Sbjct: 61   NLKSSS--SNPTRLRPLQDSIQSNFMENIENSVDFHIPTCEQEQIFHQRVENTETCADLV 118

Query: 3252 IPRSENSINHQLLCLEPRRRIFVQDPPWISAIFLKGLYKRVKQQEDREMEKRKFNLLRRR 3073
            IPRSENS NHQL+CLEPRRRIFVQDPPW S+IFLKGLYKR+K QE REM+KRKFNLLRRR
Sbjct: 119  IPRSENSTNHQLMCLEPRRRIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLRRR 178

Query: 3072 QVKEETEAWERMVDEYKELEAEMIEKRLAPNLPHIKGLFLGWFEPLREAIAREQKVQRTK 2893
            QVK+ETEAWERMVDEYKELEA+MIEKRLAPNLPHIKGLFLGWF PLREAI REQK+QRTK
Sbjct: 179  QVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLREAIEREQKMQRTK 238

Query: 2892 KQKAAYAPHIELLPADKMAVIVMHKMMGLVMAGHEDGCVQVVQAAVHIGMAIEQEVRIHS 2713
            KQKAAYAPHIELLPADK+AVIVMHKMMGLVMAGHED CVQVVQAAVHIGMAIEQE+RIHS
Sbjct: 239  KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHS 298

Query: 2712 FLEKTKNYKRKKIVADTEEVLSKEKEMLRKRVNSLIRSKRFMEAQKLLKNEGKKPWGRDT 2533
            FLEKTKNYKRKKI+ADTEEVLSKEKE+LRKRVNSLI+SKR MEAQKLLKNE  KPWGRDT
Sbjct: 299  FLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDT 358

Query: 2532 QAKLGSRLVELLIESAYVQHPVNQAGDSPLDVLPAFRHRFKIIMKHPGQKITKRYGVVEC 2353
            QAKLGSRLVELLIE+AYVQHPVN A  SP DV PAFRHRFK I+KHPGQK TKRYGVVEC
Sbjct: 359  QAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVEC 418

Query: 2352 DPLVLAGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQEALKSV 2173
            DPLVLAGLDRSAKHMLIPYVPMLVPPKKWKGY+KGGYLFLPSYVMRTHGSRKQQEALKSV
Sbjct: 419  DPLVLAGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV 478

Query: 2172 TGDCMKKVLEALDTLGGTKWRVNKKVLSVLEDIWLSGGNIAGLVDRNDVPLPAKPFSEDL 1993
            TG+CMKKV EALDTLG TKWRVNK+VLSVLE IW+SGGNIAGLVDRNDVP+P KP SED+
Sbjct: 479  TGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVPIPEKPLSEDM 538

Query: 1992 TEVQNWKWSVRKAKKVNQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHP 1813
            TEVQ WKWSVRKAKK+NQERHSQRCDTELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMHP
Sbjct: 539  TEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 598

Query: 1812 HLNHLSSDVCRGVLEFAEGRPLGKSGLCWLKIHLANLFSGGVEKLSHDGRLAFVENHLND 1633
            HLNHLSSDVCRGVLEFAEGRPLGKSGL WLKIHLANLFSGGVEKLSHDGRLAFVENHL +
Sbjct: 599  HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 658

Query: 1632 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQH 1453
            IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPH+VISHLPIHQDGSCNGLQH
Sbjct: 659  IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 718

Query: 1452 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHDIMKRDSNKDPSKHPHALLAKILIDQ 1273
            YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH+IMKRDSNKDPSKHP ALLAKILIDQ
Sbjct: 719  YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ 778

Query: 1272 VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFSSACYAAKVTLTALGEI 1093
            VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLF++ACYAAKVTLTALGEI
Sbjct: 779  VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEI 838

Query: 1092 FEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQREG 913
            FEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCK+ERHLIRTSLQVLALQREG
Sbjct: 839  FEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG 898

Query: 912  NLVAIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNEIL 733
              V IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMN+IL
Sbjct: 899  KSVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQIL 958

Query: 732  RKKFVELYNMPILENLLENFQTSHPMLSFPPLPDRGNFDLEEVLKSPYFFN 580
            RKKFVELYNMPILENLLE+FQTS+P LSFPPLP+RGNFDLEEVL+SPYFFN
Sbjct: 959  RKKFVELYNMPILENLLESFQTSYPTLSFPPLPERGNFDLEEVLESPYFFN 1009


>gb|KDO62286.1| hypothetical protein CISIN_1g001795mg [Citrus sinensis]
            gi|641843387|gb|KDO62287.1| hypothetical protein
            CISIN_1g001795mg [Citrus sinensis]
          Length = 1012

 Score = 1783 bits (4619), Expect = 0.0
 Identities = 887/1013 (87%), Positives = 930/1013 (91%), Gaps = 2/1013 (0%)
 Frame = -1

Query: 3612 MASAASISQIQYPXXXXXXXXXXXXXTLNIFNTKRDDKSFKSLHFLHXXXXXXXXXXXXX 3433
            MASAASISQIQYP              LNIFNTKRDD S K LHFLH             
Sbjct: 1    MASAASISQIQYPPTCSTSTTTATRKALNIFNTKRDDGSSKILHFLHSCSSSSSSSSSFP 60

Query: 3432 XXXXXXXSANPIRLCP--LQDSLHSNFMENIENSGNFHLPSSEKDKIVHQRVEQIETFSD 3259
                    + P RL P  LQDS+ SNFMENIENS +FH+P+ E+++  HQRVE  ET +D
Sbjct: 61   VNLKSSS-SKPTRLRPRPLQDSIQSNFMENIENSVDFHIPTCEQEQNFHQRVENTETCAD 119

Query: 3258 LGIPRSENSINHQLLCLEPRRRIFVQDPPWISAIFLKGLYKRVKQQEDREMEKRKFNLLR 3079
            L IPRSENS NHQL+CLEPRRRIFVQDPPW S+IFLKGLYKR+K QE REM+KRKFNLLR
Sbjct: 120  LVIPRSENSTNHQLMCLEPRRRIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLR 179

Query: 3078 RRQVKEETEAWERMVDEYKELEAEMIEKRLAPNLPHIKGLFLGWFEPLREAIAREQKVQR 2899
            RRQVK+ETEAWERMVDEYKELEA+MIEKRLAPNLPHIKGLFLGWF PL EAI REQK+QR
Sbjct: 180  RRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR 239

Query: 2898 TKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMAGHEDGCVQVVQAAVHIGMAIEQEVRI 2719
            TKKQKAAYAPHIELLPADK+AVIVMHKMMGLVMAGHED CVQVVQAAVHIGMAIEQE+RI
Sbjct: 240  TKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRI 299

Query: 2718 HSFLEKTKNYKRKKIVADTEEVLSKEKEMLRKRVNSLIRSKRFMEAQKLLKNEGKKPWGR 2539
            HSFLEKTKNYKRKKI+ADTEEVLSKEKE+LRKRVNSLI+SKR MEAQKLLKNE  KPWGR
Sbjct: 300  HSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGR 359

Query: 2538 DTQAKLGSRLVELLIESAYVQHPVNQAGDSPLDVLPAFRHRFKIIMKHPGQKITKRYGVV 2359
            DTQAKLGSRLVELLIE+AYVQHPVN A  SP DV PAFRHRFK I+KHPGQK TKRYGVV
Sbjct: 360  DTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVV 419

Query: 2358 ECDPLVLAGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQEALK 2179
            ECDPLVL GLDRSAKHMLIPYVPMLVPPKKWKGY+KGGYLFLPSYVMRTHGSRKQQEALK
Sbjct: 420  ECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALK 479

Query: 2178 SVTGDCMKKVLEALDTLGGTKWRVNKKVLSVLEDIWLSGGNIAGLVDRNDVPLPAKPFSE 1999
            SVTG+CMKKV EALDTLG TKWRVNK+VLSVLE IW+SGGNIAGLVDRNDV +P KP SE
Sbjct: 480  SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSE 539

Query: 1998 DLTEVQNWKWSVRKAKKVNQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPM 1819
            D+TEVQ WKWSVRKAKK+NQERHSQRCDTELKLSVAR+MKDEEGFYYPHNLDFRGRAYPM
Sbjct: 540  DMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPM 599

Query: 1818 HPHLNHLSSDVCRGVLEFAEGRPLGKSGLCWLKIHLANLFSGGVEKLSHDGRLAFVENHL 1639
            HPHLNHLSSDVCRGVLEFAEGRPLGKSGL WLKIHLANLFSGGVEKLSHDGRLAFVENHL
Sbjct: 600  HPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHL 659

Query: 1638 NDIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGL 1459
             +IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPH+VISHLPIHQDGSCNGL
Sbjct: 660  YEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGL 719

Query: 1458 QHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHDIMKRDSNKDPSKHPHALLAKILI 1279
            QHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH+IMKRDSNKDPSKHP ALLAKILI
Sbjct: 720  QHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI 779

Query: 1278 DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFSSACYAAKVTLTALG 1099
            DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLF++ACYAAKVTLTALG
Sbjct: 780  DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALG 839

Query: 1098 EIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQR 919
            EIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCK+ERHLIRTSLQVLALQR
Sbjct: 840  EIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR 899

Query: 918  EGNLVAIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNE 739
            EGNLV IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMN+
Sbjct: 900  EGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQ 959

Query: 738  ILRKKFVELYNMPILENLLENFQTSHPMLSFPPLPDRGNFDLEEVLKSPYFFN 580
            ILRKKFVELYNMP+LENLLE+FQTS+P LSFPPLP+RGNFDLEEVL+SPYFFN
Sbjct: 960  ILRKKFVELYNMPMLENLLESFQTSYPTLSFPPLPERGNFDLEEVLESPYFFN 1012


>gb|KDO62285.1| hypothetical protein CISIN_1g001795mg [Citrus sinensis]
          Length = 1012

 Score = 1782 bits (4616), Expect = 0.0
 Identities = 886/1013 (87%), Positives = 930/1013 (91%), Gaps = 2/1013 (0%)
 Frame = -1

Query: 3612 MASAASISQIQYPXXXXXXXXXXXXXTLNIFNTKRDDKSFKSLHFLHXXXXXXXXXXXXX 3433
            MASAASISQIQYP              LNIFNTKRDD S K LHFLH             
Sbjct: 1    MASAASISQIQYPPTCSTSTTTATRKALNIFNTKRDDGSSKILHFLHSCSSSSSSSSSFP 60

Query: 3432 XXXXXXXSANPIRLCP--LQDSLHSNFMENIENSGNFHLPSSEKDKIVHQRVEQIETFSD 3259
                    + P RL P  LQDS+ SNFMENIENS +FH+P+ E+++  HQRVE  ET +D
Sbjct: 61   VNLKSSS-SKPTRLRPRPLQDSIQSNFMENIENSVDFHIPTCEQEQNFHQRVENTETCAD 119

Query: 3258 LGIPRSENSINHQLLCLEPRRRIFVQDPPWISAIFLKGLYKRVKQQEDREMEKRKFNLLR 3079
            L IPRSENS NHQL+CLEPRRRIFVQDPPW S+IFLKGLYKR+K QE REM+KRKFNLLR
Sbjct: 120  LVIPRSENSTNHQLMCLEPRRRIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLR 179

Query: 3078 RRQVKEETEAWERMVDEYKELEAEMIEKRLAPNLPHIKGLFLGWFEPLREAIAREQKVQR 2899
            RRQVK+ETEAWERMVDEYKELEA+MIEKRLAPNLPHIKGLFLGWF PL EAI REQK+QR
Sbjct: 180  RRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR 239

Query: 2898 TKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMAGHEDGCVQVVQAAVHIGMAIEQEVRI 2719
            TKKQKAAYAPHIELLPADK+AVIVMHKMMGLVMAGHED CVQVVQAAVHIGMAIEQE+RI
Sbjct: 240  TKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRI 299

Query: 2718 HSFLEKTKNYKRKKIVADTEEVLSKEKEMLRKRVNSLIRSKRFMEAQKLLKNEGKKPWGR 2539
            HSFLEKTKNYKRKKI+ADTEEVLSKEKE+LRKRVNSLI+SKR MEAQKLLKNE  KPWGR
Sbjct: 300  HSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGR 359

Query: 2538 DTQAKLGSRLVELLIESAYVQHPVNQAGDSPLDVLPAFRHRFKIIMKHPGQKITKRYGVV 2359
            DTQAKLGSRLVELLIE+AYVQHPVN A  SP DV PAFRHRFK I+KHPGQK TKRYGVV
Sbjct: 360  DTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVV 419

Query: 2358 ECDPLVLAGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQEALK 2179
            ECDPLVL GLDRSAKHMLIPYVPMLVPPKKWKGY+KGGYLFLPSYVMRTHGSRKQQEALK
Sbjct: 420  ECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALK 479

Query: 2178 SVTGDCMKKVLEALDTLGGTKWRVNKKVLSVLEDIWLSGGNIAGLVDRNDVPLPAKPFSE 1999
            SVTG+CMKKV EALDTLG TKWRVNK+VLSVLE IW+SGGNIAGLVDRNDV +P KP SE
Sbjct: 480  SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSE 539

Query: 1998 DLTEVQNWKWSVRKAKKVNQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPM 1819
            D+TEVQ WKWSVRKAKK+NQERHSQRCDTELKLSVAR+MKDEEGFYYPHNLDFRGRAYPM
Sbjct: 540  DMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPM 599

Query: 1818 HPHLNHLSSDVCRGVLEFAEGRPLGKSGLCWLKIHLANLFSGGVEKLSHDGRLAFVENHL 1639
            HPHLNHLSSDVCRGVLEFAEGRPLGKSGL WLKIHLANLFSGGVEKLSHDGRLAFVENHL
Sbjct: 600  HPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHL 659

Query: 1638 NDIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGL 1459
             +IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPH+VISHLPIHQDGSCNGL
Sbjct: 660  YEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGL 719

Query: 1458 QHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHDIMKRDSNKDPSKHPHALLAKILI 1279
            QHYAALGRNT+EAAAVNLVAGEKPADVYSEIAVRVH+IMKRDSNKDPSKHP ALLAKILI
Sbjct: 720  QHYAALGRNTVEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI 779

Query: 1278 DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFSSACYAAKVTLTALG 1099
            DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLF++ACYAAKVTLTALG
Sbjct: 780  DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALG 839

Query: 1098 EIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQR 919
            EIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCK+ERHLIRTSLQVLALQR
Sbjct: 840  EIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR 899

Query: 918  EGNLVAIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNE 739
            EGNLV IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMN+
Sbjct: 900  EGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQ 959

Query: 738  ILRKKFVELYNMPILENLLENFQTSHPMLSFPPLPDRGNFDLEEVLKSPYFFN 580
            ILRKKFVELYNMP+LENLLE+FQTS+P LSFPPLP+RGNFDLEEVL+SPYFFN
Sbjct: 960  ILRKKFVELYNMPMLENLLESFQTSYPTLSFPPLPERGNFDLEEVLESPYFFN 1012


>ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citrus clementina]
            gi|557556792|gb|ESR66806.1| hypothetical protein
            CICLE_v10007333mg [Citrus clementina]
          Length = 1012

 Score = 1776 bits (4601), Expect = 0.0
 Identities = 885/1013 (87%), Positives = 928/1013 (91%), Gaps = 2/1013 (0%)
 Frame = -1

Query: 3612 MASAASISQIQYPXXXXXXXXXXXXXTLNIFNTKRDDKSFKSLHFLHXXXXXXXXXXXXX 3433
            MASAASISQIQYP              LNIFNTKRDD S K LHFLH             
Sbjct: 1    MASAASISQIQYPPTCSTSTTTATRKALNIFNTKRDDGSSKILHFLHSCSSSSSSSSSFP 60

Query: 3432 XXXXXXXSANPIRLCP--LQDSLHSNFMENIENSGNFHLPSSEKDKIVHQRVEQIETFSD 3259
                    + P RL P  LQDS+ SNFMENIENS +FH+P+ E+++  HQRVE IET +D
Sbjct: 61   VNLKSSS-SKPTRLRPRPLQDSIQSNFMENIENSVDFHIPTCEQEQNFHQRVENIETCAD 119

Query: 3258 LGIPRSENSINHQLLCLEPRRRIFVQDPPWISAIFLKGLYKRVKQQEDREMEKRKFNLLR 3079
              IPRSENS NHQL+CLEPRRRIFVQDPPW S+IFLKGLYKR+K QE REM+KRKFNLLR
Sbjct: 120  PVIPRSENSTNHQLMCLEPRRRIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLR 179

Query: 3078 RRQVKEETEAWERMVDEYKELEAEMIEKRLAPNLPHIKGLFLGWFEPLREAIAREQKVQR 2899
            RRQVK+ETEAWERMVDEYKELEA+MIEKRLAPNLPHIKGLFLGWF PL EAI REQK+QR
Sbjct: 180  RRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR 239

Query: 2898 TKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMAGHEDGCVQVVQAAVHIGMAIEQEVRI 2719
            TKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMAGHED CVQVVQAAVHIGMAIEQE+RI
Sbjct: 240  TKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRI 299

Query: 2718 HSFLEKTKNYKRKKIVADTEEVLSKEKEMLRKRVNSLIRSKRFMEAQKLLKNEGKKPWGR 2539
            HSFLEKTKNYKRKKI+ADTEEVLSKEKE+LRKRVNSLI+SKR MEAQKLLKNE  KPWGR
Sbjct: 300  HSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGR 359

Query: 2538 DTQAKLGSRLVELLIESAYVQHPVNQAGDSPLDVLPAFRHRFKIIMKHPGQKITKRYGVV 2359
            DTQAKLGSRLVELLIE+AYVQHPVN A  SP DV PAFRHRFK I+KHPGQK TKRYGVV
Sbjct: 360  DTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVV 419

Query: 2358 ECDPLVLAGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQEALK 2179
            ECDPLVL GLDRSAKHMLIPYVPMLVPPKKWKGY+KGGYLFLPSYVMRTHGSRKQQEALK
Sbjct: 420  ECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALK 479

Query: 2178 SVTGDCMKKVLEALDTLGGTKWRVNKKVLSVLEDIWLSGGNIAGLVDRNDVPLPAKPFSE 1999
            SVTG+CMKKV EALDTLG TKWRVNK+VLSVLE IW+SGGNIAGLVDRNDV +P KP SE
Sbjct: 480  SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSE 539

Query: 1998 DLTEVQNWKWSVRKAKKVNQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPM 1819
            D+TEVQ WKWSVRKAKK+NQERHSQRCDTELKLSVAR+MKDEEGFYYPHNLDFRGRAYPM
Sbjct: 540  DMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPM 599

Query: 1818 HPHLNHLSSDVCRGVLEFAEGRPLGKSGLCWLKIHLANLFSGGVEKLSHDGRLAFVENHL 1639
            HPHLNHLSSDVCRGVLEFAEGRPLGKSGL WLKIHLANLFSGGVEKLSHDGRLAFVENHL
Sbjct: 600  HPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHL 659

Query: 1638 NDIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGL 1459
             +IFDSAENPINGSRWWLTAEDPFQCLAACINL+EALKSSSPH+VISHLPIHQDGSCNGL
Sbjct: 660  YEIFDSAENPINGSRWWLTAEDPFQCLAACINLAEALKSSSPHSVISHLPIHQDGSCNGL 719

Query: 1458 QHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHDIMKRDSNKDPSKHPHALLAKILI 1279
            QHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH+IMKRDSNKD SKHP ALLAKILI
Sbjct: 720  QHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDHSKHPQALLAKILI 779

Query: 1278 DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFSSACYAAKVTLTALG 1099
            DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLF++ACYAAKVTLTALG
Sbjct: 780  DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALG 839

Query: 1098 EIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQR 919
            EIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCK+ERHLIRTSLQVLALQR
Sbjct: 840  EIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR 899

Query: 918  EGNLVAIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNE 739
            EGNLV IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMN+
Sbjct: 900  EGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQ 959

Query: 738  ILRKKFVELYNMPILENLLENFQTSHPMLSFPPLPDRGNFDLEEVLKSPYFFN 580
            ILRKKFVELYNMP+LENLLE+FQTS+P LSFP LP+RGNFDLEEVL+SPYFFN
Sbjct: 960  ILRKKFVELYNMPMLENLLESFQTSYPTLSFPSLPERGNFDLEEVLESPYFFN 1012


>gb|KDO62288.1| hypothetical protein CISIN_1g001795mg [Citrus sinensis]
          Length = 986

 Score = 1721 bits (4458), Expect = 0.0
 Identities = 863/1013 (85%), Positives = 905/1013 (89%), Gaps = 2/1013 (0%)
 Frame = -1

Query: 3612 MASAASISQIQYPXXXXXXXXXXXXXTLNIFNTKRDDKSFKSLHFLHXXXXXXXXXXXXX 3433
            MASAASISQIQYP              LNIFNTKRDD S K LHFLH             
Sbjct: 1    MASAASISQIQYPPTCSTSTTTATRKALNIFNTKRDDGSSKILHFLHSCSSSSSSSSSFP 60

Query: 3432 XXXXXXXSANPIRLCP--LQDSLHSNFMENIENSGNFHLPSSEKDKIVHQRVEQIETFSD 3259
                    + P RL P  LQDS+ SNFMENIENS +FH+P+ E+++  HQRVE  ET +D
Sbjct: 61   VNLKSSS-SKPTRLRPRPLQDSIQSNFMENIENSVDFHIPTCEQEQNFHQRVENTETCAD 119

Query: 3258 LGIPRSENSINHQLLCLEPRRRIFVQDPPWISAIFLKGLYKRVKQQEDREMEKRKFNLLR 3079
            L IPRSENS NHQL+CLEPRRRIFVQDPPW S+IFLKGLYKR+K QE REM+KRKFNLLR
Sbjct: 120  LVIPRSENSTNHQLMCLEPRRRIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLR 179

Query: 3078 RRQVKEETEAWERMVDEYKELEAEMIEKRLAPNLPHIKGLFLGWFEPLREAIAREQKVQR 2899
            RRQVK+ETEAWERMVDEYKELEA+MIEKRLAPNLPHIKGLFLGWF PL EAI REQK+QR
Sbjct: 180  RRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR 239

Query: 2898 TKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMAGHEDGCVQVVQAAVHIGMAIEQEVRI 2719
            TKKQKAAYAPHIELLPADK+AVIVMHKMMGLVMAGHED CVQVVQAAVHIGMAIEQE+RI
Sbjct: 240  TKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRI 299

Query: 2718 HSFLEKTKNYKRKKIVADTEEVLSKEKEMLRKRVNSLIRSKRFMEAQKLLKNEGKKPWGR 2539
            HSFLEKTKNYKRKKI+ADTEEVLSKEKE+LRKRVNSLI+SKR MEAQKLLKNE  KPWGR
Sbjct: 300  HSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGR 359

Query: 2538 DTQAKLGSRLVELLIESAYVQHPVNQAGDSPLDVLPAFRHRFKIIMKHPGQKITKRYGVV 2359
            DTQAKLGSRLVELLIE+AYVQHPVN A  SP DV PAFRHRFK I+KHPGQK TKRYGVV
Sbjct: 360  DTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVV 419

Query: 2358 ECDPLVLAGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQEALK 2179
            ECDPLVL GLDRSAKHMLIPYVPMLVPPKKWKGY+KGGYLFLPSYVMRTHGSRKQQEALK
Sbjct: 420  ECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALK 479

Query: 2178 SVTGDCMKKVLEALDTLGGTKWRVNKKVLSVLEDIWLSGGNIAGLVDRNDVPLPAKPFSE 1999
            SVTG+CMKKV EALDTLG TKWRVNK+VLSVLE IW+SGGNIAGLVDRNDV +P KP SE
Sbjct: 480  SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSE 539

Query: 1998 DLTEVQNWKWSVRKAKKVNQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPM 1819
            D+TEVQ WKWSVRKAKK+NQERHSQRCDTELKLSVAR+MKDEEGFYYPHNLDFRGRAYPM
Sbjct: 540  DMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPM 599

Query: 1818 HPHLNHLSSDVCRGVLEFAEGRPLGKSGLCWLKIHLANLFSGGVEKLSHDGRLAFVENHL 1639
            HPHLNHLSSDVCRGVLEFAEGRPLGKSGL WLKIHLANLFS                   
Sbjct: 600  HPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS------------------- 640

Query: 1638 NDIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGL 1459
                   ENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPH+VISHLPIHQDGSCNGL
Sbjct: 641  -------ENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGL 693

Query: 1458 QHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHDIMKRDSNKDPSKHPHALLAKILI 1279
            QHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH+IMKRDSNKDPSKHP ALLAKILI
Sbjct: 694  QHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI 753

Query: 1278 DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFSSACYAAKVTLTALG 1099
            DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLF++ACYAAKVTLTALG
Sbjct: 754  DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALG 813

Query: 1098 EIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQR 919
            EIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCK+ERHLIRTSLQVLALQR
Sbjct: 814  EIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR 873

Query: 918  EGNLVAIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNE 739
            EGNLV IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMN+
Sbjct: 874  EGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQ 933

Query: 738  ILRKKFVELYNMPILENLLENFQTSHPMLSFPPLPDRGNFDLEEVLKSPYFFN 580
            ILRKKFVELYNMP+LENLLE+FQTS+P LSFPPLP+RGNFDLEEVL+SPYFFN
Sbjct: 934  ILRKKFVELYNMPMLENLLESFQTSYPTLSFPPLPERGNFDLEEVLESPYFFN 986


>ref|XP_006453567.1| hypothetical protein CICLE_v10007333mg [Citrus clementina]
            gi|557556793|gb|ESR66807.1| hypothetical protein
            CICLE_v10007333mg [Citrus clementina]
          Length = 986

 Score = 1714 bits (4440), Expect = 0.0
 Identities = 861/1013 (84%), Positives = 903/1013 (89%), Gaps = 2/1013 (0%)
 Frame = -1

Query: 3612 MASAASISQIQYPXXXXXXXXXXXXXTLNIFNTKRDDKSFKSLHFLHXXXXXXXXXXXXX 3433
            MASAASISQIQYP              LNIFNTKRDD S K LHFLH             
Sbjct: 1    MASAASISQIQYPPTCSTSTTTATRKALNIFNTKRDDGSSKILHFLHSCSSSSSSSSSFP 60

Query: 3432 XXXXXXXSANPIRLCP--LQDSLHSNFMENIENSGNFHLPSSEKDKIVHQRVEQIETFSD 3259
                    + P RL P  LQDS+ SNFMENIENS +FH+P+ E+++  HQRVE IET +D
Sbjct: 61   VNLKSSS-SKPTRLRPRPLQDSIQSNFMENIENSVDFHIPTCEQEQNFHQRVENIETCAD 119

Query: 3258 LGIPRSENSINHQLLCLEPRRRIFVQDPPWISAIFLKGLYKRVKQQEDREMEKRKFNLLR 3079
              IPRSENS NHQL+CLEPRRRIFVQDPPW S+IFLKGLYKR+K QE REM+KRKFNLLR
Sbjct: 120  PVIPRSENSTNHQLMCLEPRRRIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLR 179

Query: 3078 RRQVKEETEAWERMVDEYKELEAEMIEKRLAPNLPHIKGLFLGWFEPLREAIAREQKVQR 2899
            RRQVK+ETEAWERMVDEYKELEA+MIEKRLAPNLPHIKGLFLGWF PL EAI REQK+QR
Sbjct: 180  RRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR 239

Query: 2898 TKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMAGHEDGCVQVVQAAVHIGMAIEQEVRI 2719
            TKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMAGHED CVQVVQAAVHIGMAIEQE+RI
Sbjct: 240  TKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRI 299

Query: 2718 HSFLEKTKNYKRKKIVADTEEVLSKEKEMLRKRVNSLIRSKRFMEAQKLLKNEGKKPWGR 2539
            HSFLEKTKNYKRKKI+ADTEEVLSKEKE+LRKRVNSLI+SKR MEAQKLLKNE  KPWGR
Sbjct: 300  HSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGR 359

Query: 2538 DTQAKLGSRLVELLIESAYVQHPVNQAGDSPLDVLPAFRHRFKIIMKHPGQKITKRYGVV 2359
            DTQAKLGSRLVELLIE+AYVQHPVN A  SP DV PAFRHRFK I+KHPGQK TKRYGVV
Sbjct: 360  DTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVV 419

Query: 2358 ECDPLVLAGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQEALK 2179
            ECDPLVL GLDRSAKHMLIPYVPMLVPPKKWKGY+KGGYLFLPSYVMRTHGSRKQQEALK
Sbjct: 420  ECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALK 479

Query: 2178 SVTGDCMKKVLEALDTLGGTKWRVNKKVLSVLEDIWLSGGNIAGLVDRNDVPLPAKPFSE 1999
            SVTG+CMKKV EALDTLG TKWRVNK+VLSVLE IW+SGGNIAGLVDRNDV +P KP SE
Sbjct: 480  SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSE 539

Query: 1998 DLTEVQNWKWSVRKAKKVNQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPM 1819
            D+TEVQ WKWSVRKAKK+NQERHSQRCDTELKLSVAR+MKDEEGFYYPHNLDFRGRAYPM
Sbjct: 540  DMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPM 599

Query: 1818 HPHLNHLSSDVCRGVLEFAEGRPLGKSGLCWLKIHLANLFSGGVEKLSHDGRLAFVENHL 1639
            HPHLNHLSSDVCRGVLEFAEGRPLGKSGL WLKIHLANLFS                   
Sbjct: 600  HPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS------------------- 640

Query: 1638 NDIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGL 1459
                   ENPINGSRWWLTAEDPFQCLAACINL+EALKSSSPH+VISHLPIHQDGSCNGL
Sbjct: 641  -------ENPINGSRWWLTAEDPFQCLAACINLAEALKSSSPHSVISHLPIHQDGSCNGL 693

Query: 1458 QHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHDIMKRDSNKDPSKHPHALLAKILI 1279
            QHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH+IMKRDSNKD SKHP ALLAKILI
Sbjct: 694  QHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDHSKHPQALLAKILI 753

Query: 1278 DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFSSACYAAKVTLTALG 1099
            DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLF++ACYAAKVTLTALG
Sbjct: 754  DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALG 813

Query: 1098 EIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQR 919
            EIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCK+ERHLIRTSLQVLALQR
Sbjct: 814  EIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR 873

Query: 918  EGNLVAIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNE 739
            EGNLV IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMN+
Sbjct: 874  EGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQ 933

Query: 738  ILRKKFVELYNMPILENLLENFQTSHPMLSFPPLPDRGNFDLEEVLKSPYFFN 580
            ILRKKFVELYNMP+LENLLE+FQTS+P LSFP LP+RGNFDLEEVL+SPYFFN
Sbjct: 934  ILRKKFVELYNMPMLENLLESFQTSYPTLSFPSLPERGNFDLEEVLESPYFFN 986


>gb|KDO62289.1| hypothetical protein CISIN_1g001795mg [Citrus sinensis]
          Length = 952

 Score = 1648 bits (4267), Expect = 0.0
 Identities = 824/944 (87%), Positives = 862/944 (91%), Gaps = 2/944 (0%)
 Frame = -1

Query: 3612 MASAASISQIQYPXXXXXXXXXXXXXTLNIFNTKRDDKSFKSLHFLHXXXXXXXXXXXXX 3433
            MASAASISQIQYP              LNIFNTKRDD S K LHFLH             
Sbjct: 1    MASAASISQIQYPPTCSTSTTTATRKALNIFNTKRDDGSSKILHFLHSCSSSSSSSSSFP 60

Query: 3432 XXXXXXXSANPIRLCP--LQDSLHSNFMENIENSGNFHLPSSEKDKIVHQRVEQIETFSD 3259
                    + P RL P  LQDS+ SNFMENIENS +FH+P+ E+++  HQRVE  ET +D
Sbjct: 61   VNLKSSS-SKPTRLRPRPLQDSIQSNFMENIENSVDFHIPTCEQEQNFHQRVENTETCAD 119

Query: 3258 LGIPRSENSINHQLLCLEPRRRIFVQDPPWISAIFLKGLYKRVKQQEDREMEKRKFNLLR 3079
            L IPRSENS NHQL+CLEPRRRIFVQDPPW S+IFLKGLYKR+K QE REM+KRKFNLLR
Sbjct: 120  LVIPRSENSTNHQLMCLEPRRRIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLR 179

Query: 3078 RRQVKEETEAWERMVDEYKELEAEMIEKRLAPNLPHIKGLFLGWFEPLREAIAREQKVQR 2899
            RRQVK+ETEAWERMVDEYKELEA+MIEKRLAPNLPHIKGLFLGWF PL EAI REQK+QR
Sbjct: 180  RRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR 239

Query: 2898 TKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMAGHEDGCVQVVQAAVHIGMAIEQEVRI 2719
            TKKQKAAYAPHIELLPADK+AVIVMHKMMGLVMAGHED CVQVVQAAVHIGMAIEQE+RI
Sbjct: 240  TKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRI 299

Query: 2718 HSFLEKTKNYKRKKIVADTEEVLSKEKEMLRKRVNSLIRSKRFMEAQKLLKNEGKKPWGR 2539
            HSFLEKTKNYKRKKI+ADTEEVLSKEKE+LRKRVNSLI+SKR MEAQKLLKNE  KPWGR
Sbjct: 300  HSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGR 359

Query: 2538 DTQAKLGSRLVELLIESAYVQHPVNQAGDSPLDVLPAFRHRFKIIMKHPGQKITKRYGVV 2359
            DTQAKLGSRLVELLIE+AYVQHPVN A  SP DV PAFRHRFK I+KHPGQK TKRYGVV
Sbjct: 360  DTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVV 419

Query: 2358 ECDPLVLAGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQEALK 2179
            ECDPLVL GLDRSAKHMLIPYVPMLVPPKKWKGY+KGGYLFLPSYVMRTHGSRKQQEALK
Sbjct: 420  ECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALK 479

Query: 2178 SVTGDCMKKVLEALDTLGGTKWRVNKKVLSVLEDIWLSGGNIAGLVDRNDVPLPAKPFSE 1999
            SVTG+CMKKV EALDTLG TKWRVNK+VLSVLE IW+SGGNIAGLVDRNDV +P KP SE
Sbjct: 480  SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSE 539

Query: 1998 DLTEVQNWKWSVRKAKKVNQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPM 1819
            D+TEVQ WKWSVRKAKK+NQERHSQRCDTELKLSVAR+MKDEEGFYYPHNLDFRGRAYPM
Sbjct: 540  DMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPM 599

Query: 1818 HPHLNHLSSDVCRGVLEFAEGRPLGKSGLCWLKIHLANLFSGGVEKLSHDGRLAFVENHL 1639
            HPHLNHLSSDVCRGVLEFAEGRPLGKSGL WLKIHLANLFSGGVEKLSHDGRLAFVENHL
Sbjct: 600  HPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHL 659

Query: 1638 NDIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGL 1459
             +IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPH+VISHLPIHQDGSCNGL
Sbjct: 660  YEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGL 719

Query: 1458 QHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHDIMKRDSNKDPSKHPHALLAKILI 1279
            QHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH+IMKRDSNKDPSKHP ALLAKILI
Sbjct: 720  QHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI 779

Query: 1278 DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFSSACYAAKVTLTALG 1099
            DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLF++ACYAAKVTLTALG
Sbjct: 780  DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALG 839

Query: 1098 EIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQR 919
            EIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCK+ERHLIRTSLQVLALQR
Sbjct: 840  EIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR 899

Query: 918  EGNLVAIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGV 787
            EGNLV IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAG+
Sbjct: 900  EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943


>ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
            gi|508784240|gb|EOY31496.1| DNA/RNA polymerases
            superfamily protein isoform 1 [Theobroma cacao]
          Length = 978

 Score = 1538 bits (3982), Expect = 0.0
 Identities = 753/947 (79%), Positives = 841/947 (88%), Gaps = 5/947 (0%)
 Frame = -1

Query: 3405 NPIRLCPLQDSLHSNFMENIENSGNFHLPSSEKDKIVHQRVEQIETFSDLGIPRSENSIN 3226
            NP R CPL DSLH NF+ENIEN  NF LP ++                           +
Sbjct: 60   NPARFCPLHDSLHDNFVENIENPSNFLLPKAQ---------------------------S 92

Query: 3225 HQLLCLEPRRRIFVQDPPWISAIFLKGLYKRVKQQ---EDREMEKRKFNLLRRRQVKEET 3055
            HQ+L  E   R+F+QDPPWISA+FLKGLYK   Q    E +E+EKRK+NLLRRRQVKEET
Sbjct: 93   HQILSPESTPRLFIQDPPWISALFLKGLYKMTNQTVKIEHKEIEKRKYNLLRRRQVKEET 152

Query: 3054 EAWERMVDEYKELEAEMIEKRLAPNLPHIKGLFLGWFEPLREAIAREQKVQR--TKKQKA 2881
            EAWE+MV+EY+EL+ EM EK+LAPNLP++KGLFLGWFEP+REAIAREQKVQ+  +KK +A
Sbjct: 153  EAWEKMVEEYRELQREMCEKKLAPNLPYVKGLFLGWFEPMREAIAREQKVQKGKSKKLRA 212

Query: 2880 AYAPHIELLPADKMAVIVMHKMMGLVMAGHEDGCVQVVQAAVHIGMAIEQEVRIHSFLEK 2701
            AYAPHIELLPADKMAVIVMHKMMGLVM   E+G VQVVQAAVHIG+AIEQEVRIH+FLEK
Sbjct: 213  AYAPHIELLPADKMAVIVMHKMMGLVMGAQENGFVQVVQAAVHIGVAIEQEVRIHNFLEK 272

Query: 2700 TKNYKRKKIVADTEEVLSKEKEMLRKRVNSLIRSKRFMEAQKLLKNEGKKPWGRDTQAKL 2521
            TKNY+RKK   D  + LSKEKE+L+KRVNSLIR +R +E QKL+KNE  KPWGRD QAKL
Sbjct: 273  TKNYQRKK-TTDEVQGLSKEKEILKKRVNSLIRRRRLVEVQKLVKNEEIKPWGRDAQAKL 331

Query: 2520 GSRLVELLIESAYVQHPVNQAGDSPLDVLPAFRHRFKIIMKHPGQKITKRYGVVECDPLV 2341
            GSRL+ELL E+AYVQ P++Q+GDSP DV PAFRH+FK I K PG+K+ KRYGV+ECDPL+
Sbjct: 332  GSRLLELLTETAYVQPPIDQSGDSPPDVQPAFRHKFKTISKDPGKKMMKRYGVIECDPLI 391

Query: 2340 LAGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQEALKSVTGDC 2161
            L+GLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQ+ALK V    
Sbjct: 392  LSGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDALKGVHVKK 451

Query: 2160 MKKVLEALDTLGGTKWRVNKKVLSVLEDIWLSGGNIAGLVDRNDVPLPAKPFSEDLTEVQ 1981
            M+KV EALDTLG TKWRVNKKVL+V+E IW SGGNIAGLVDRND+P+P KP SED TE Q
Sbjct: 452  MQKVFEALDTLGSTKWRVNKKVLAVVESIWASGGNIAGLVDRNDIPIPEKPSSEDSTESQ 511

Query: 1980 NWKWSVRKAKKVNQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNH 1801
             WKWSVRKA K+N+ERHSQRCDTELKLSVARKM++EEGFYYPHNLDFRGRAYPMHPHLNH
Sbjct: 512  EWKWSVRKANKINRERHSQRCDTELKLSVARKMENEEGFYYPHNLDFRGRAYPMHPHLNH 571

Query: 1800 LSSDVCRGVLEFAEGRPLGKSGLCWLKIHLANLFSGGVEKLSHDGRLAFVENHLNDIFDS 1621
            LSSD+CRGVLEFAEGRPLG+SGL WLKIHLANLF+GGVEKLSHDGRLAFV+NHL+DIFDS
Sbjct: 572  LSSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLFAGGVEKLSHDGRLAFVDNHLDDIFDS 631

Query: 1620 AENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAAL 1441
            AENPING+RWWLTAEDPFQCLAACINLSE+LKSSSPH+V+S+LPIHQDGSCNGLQHYAAL
Sbjct: 632  AENPINGNRWWLTAEDPFQCLAACINLSESLKSSSPHSVLSYLPIHQDGSCNGLQHYAAL 691

Query: 1440 GRNTLEAAAVNLVAGEKPADVYSEIAVRVHDIMKRDSNKDPSKHPHALLAKILIDQVDRK 1261
            GR++LEAAAVNLVAGEKPADVYSEIAVRVH+IMKRDS+KDP+ +P+A LAK+LIDQVDRK
Sbjct: 692  GRDSLEAAAVNLVAGEKPADVYSEIAVRVHNIMKRDSDKDPATNPNASLAKLLIDQVDRK 751

Query: 1260 LVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFSSACYAAKVTLTALGEIFEAA 1081
            LVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDR LF++ACY AKVTL ALGE+F+AA
Sbjct: 752  LVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRVLFAAACYTAKVTLAALGELFQAA 811

Query: 1080 RSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQREGNLVA 901
            R+IMGWLGDCAKVIASENQPV+WTTPLGLPVVQPY KSERHLIRTSLQVLALQREG+ V 
Sbjct: 812  RNIMGWLGDCAKVIASENQPVQWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGDSVE 871

Query: 900  IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNEILRKKF 721
            +RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDV++MN+ILR+KF
Sbjct: 872  VRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVEKMNQILREKF 931

Query: 720  VELYNMPILENLLENFQTSHPMLSFPPLPDRGNFDLEEVLKSPYFFN 580
            VELY+MP+LENL E+ QTS+P L FPPLP+RGNFDL EVLKSPYFFN
Sbjct: 932  VELYSMPVLENLFESVQTSYPSLVFPPLPERGNFDLREVLKSPYFFN 978


>ref|XP_012445978.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Gossypium
            raimondii] gi|763786877|gb|KJB53873.1| hypothetical
            protein B456_009G009300 [Gossypium raimondii]
          Length = 972

 Score = 1525 bits (3949), Expect = 0.0
 Identities = 751/946 (79%), Positives = 835/946 (88%), Gaps = 5/946 (0%)
 Frame = -1

Query: 3402 PIRLCPLQDSLHSNFMENIENSGNFHLPSSEKDKIVHQRVEQIETFSDLGIPRSENSINH 3223
            P R  PL DSL  N ++NIEN     LP                           N+ + 
Sbjct: 55   PPRFLPLCDSLQDNIVQNIENPKKLLLP---------------------------NAHSR 87

Query: 3222 QLLCLEPRRRIFVQDPPWISAIFLKGLYKRVKQQ---EDREMEKRKFNLLRRRQVKEETE 3052
            Q+L  E   RIF+QDPPWISA+F KGLYK   Q    E +E+EKRK+NLLRRRQVKEETE
Sbjct: 88   QILSPESAPRIFIQDPPWISALFWKGLYKMTNQTVKIEHKEIEKRKYNLLRRRQVKEETE 147

Query: 3051 AWERMVDEYKELEAEMIEKRLAPNLPHIKGLFLGWFEPLREAIAREQKVQ--RTKKQKAA 2878
            AWE+MV+EY+ELE EM EK+LAPNLP++KGLFLGWFEPLREAIA+EQKVQ  + KK +AA
Sbjct: 148  AWEKMVEEYRELEREMCEKKLAPNLPYVKGLFLGWFEPLREAIAKEQKVQKGKNKKLRAA 207

Query: 2877 YAPHIELLPADKMAVIVMHKMMGLVMAGHEDGCVQVVQAAVHIGMAIEQEVRIHSFLEKT 2698
            YAPHIELLPADK+AVIVMHKMMGLVM   EDG VQVVQAAVHIG+AIEQEVRIHSFLEKT
Sbjct: 208  YAPHIELLPADKLAVIVMHKMMGLVMGAEEDGYVQVVQAAVHIGVAIEQEVRIHSFLEKT 267

Query: 2697 KNYKRKKIVADTEEVLSKEKEMLRKRVNSLIRSKRFMEAQKLLKNEGKKPWGRDTQAKLG 2518
            KNY+RK+IV D  +  SKEKE+LRKRVNSLIR +R  E QKL+KNE  KPWGRD QAKLG
Sbjct: 268  KNYQRKQIV-DEVQGASKEKEILRKRVNSLIRRRRLTEVQKLVKNEEIKPWGRDAQAKLG 326

Query: 2517 SRLVELLIESAYVQHPVNQAGDSPLDVLPAFRHRFKIIMKHPGQKITKRYGVVECDPLVL 2338
            SRL+ELL E+AYVQ P++Q+GDSPLDV PAFRH+FK I + PGQKI KRYGV+ECDPL+ 
Sbjct: 327  SRLLELLTETAYVQPPIDQSGDSPLDVRPAFRHKFKTISRGPGQKIKKRYGVIECDPLIR 386

Query: 2337 AGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQEALKSVTGDCM 2158
            +GLD+SAKHM+IPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQEALK V    M
Sbjct: 387  SGLDKSAKHMMIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQEALKGVNVKNM 446

Query: 2157 KKVLEALDTLGGTKWRVNKKVLSVLEDIWLSGGNIAGLVDRNDVPLPAKPFSEDLTEVQN 1978
            +KV EALDTLG TKWRVN KVL+V+E IW SGGNIAGLVDRND+P+P KP+SED TE+Q 
Sbjct: 447  RKVFEALDTLGSTKWRVNNKVLAVVESIWASGGNIAGLVDRNDIPIPEKPYSEDSTEIQE 506

Query: 1977 WKWSVRKAKKVNQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHL 1798
            WKWSVRKA KVN+ERHSQRCDTELKLSVARKM++EEGFYYPHNLDFRGRAYPMHPHLNHL
Sbjct: 507  WKWSVRKANKVNRERHSQRCDTELKLSVARKMENEEGFYYPHNLDFRGRAYPMHPHLNHL 566

Query: 1797 SSDVCRGVLEFAEGRPLGKSGLCWLKIHLANLFSGGVEKLSHDGRLAFVENHLNDIFDSA 1618
            SSD+CRGVLEFAEGRPLG+SGL WLKIHLANL+SGGVEKLSHDGRLAFV+NHL++IFDSA
Sbjct: 567  SSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLYSGGVEKLSHDGRLAFVDNHLDEIFDSA 626

Query: 1617 ENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALG 1438
            ENPING+RWWLTAEDPFQCLAAC+NLSEALKS+SPH++IS+LPIHQDGSCNGLQHYAALG
Sbjct: 627  ENPINGNRWWLTAEDPFQCLAACMNLSEALKSTSPHSMISYLPIHQDGSCNGLQHYAALG 686

Query: 1437 RNTLEAAAVNLVAGEKPADVYSEIAVRVHDIMKRDSNKDPSKHPHALLAKILIDQVDRKL 1258
            R+ LEAAAVNLVAGEKPADVYSEIAVRVH+IMKRDSNKDP+ +P+ALLAK+LIDQVDRKL
Sbjct: 687  RDNLEAAAVNLVAGEKPADVYSEIAVRVHNIMKRDSNKDPATNPNALLAKLLIDQVDRKL 746

Query: 1257 VKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFSSACYAAKVTLTALGEIFEAAR 1078
            VKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDR LFS+ACY AKVTL ALGE+F+AAR
Sbjct: 747  VKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLAALGELFQAAR 806

Query: 1077 SIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQREGNLVAI 898
            +IMGWLGDCAKVIASENQPVRWTTPLGLPVVQPY KSERHLIRT+LQVLALQREGN V +
Sbjct: 807  NIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYYKSERHLIRTTLQVLALQREGNSVEV 866

Query: 897  RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNEILRKKFV 718
            RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL+FAGVHDSFWTHACDV++MN+ILR+KFV
Sbjct: 867  RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLYFAGVHDSFWTHACDVEKMNQILREKFV 926

Query: 717  ELYNMPILENLLENFQTSHPMLSFPPLPDRGNFDLEEVLKSPYFFN 580
            ELY+MP+LENLLE+F+TS+P L FPPLP+RGNFDL EVLKSPYFFN
Sbjct: 927  ELYSMPVLENLLESFETSYPTLVFPPLPERGNFDLREVLKSPYFFN 972


>gb|KJB53874.1| hypothetical protein B456_009G009300 [Gossypium raimondii]
          Length = 972

 Score = 1510 bits (3910), Expect = 0.0
 Identities = 744/944 (78%), Positives = 830/944 (87%), Gaps = 5/944 (0%)
 Frame = -1

Query: 3402 PIRLCPLQDSLHSNFMENIENSGNFHLPSSEKDKIVHQRVEQIETFSDLGIPRSENSINH 3223
            P R  PL DSL  N ++NIEN     LP                           N+ + 
Sbjct: 55   PPRFLPLCDSLQDNIVQNIENPKKLLLP---------------------------NAHSR 87

Query: 3222 QLLCLEPRRRIFVQDPPWISAIFLKGLYKRVKQQ---EDREMEKRKFNLLRRRQVKEETE 3052
            Q+L  E   RIF+QDPPWISA+F KGLYK   Q    E +E+EKRK+NLLRRRQVKEETE
Sbjct: 88   QILSPESAPRIFIQDPPWISALFWKGLYKMTNQTVKIEHKEIEKRKYNLLRRRQVKEETE 147

Query: 3051 AWERMVDEYKELEAEMIEKRLAPNLPHIKGLFLGWFEPLREAIAREQKVQ--RTKKQKAA 2878
            AWE+MV+EY+ELE EM EK+LAPNLP++KGLFLGWFEPLREAIA+EQKVQ  + KK +AA
Sbjct: 148  AWEKMVEEYRELEREMCEKKLAPNLPYVKGLFLGWFEPLREAIAKEQKVQKGKNKKLRAA 207

Query: 2877 YAPHIELLPADKMAVIVMHKMMGLVMAGHEDGCVQVVQAAVHIGMAIEQEVRIHSFLEKT 2698
            YAPHIELLPADK+AVIVMHKMMGLVM   EDG VQVVQAAVHIG+AIEQEVRIHSFLEKT
Sbjct: 208  YAPHIELLPADKLAVIVMHKMMGLVMGAEEDGYVQVVQAAVHIGVAIEQEVRIHSFLEKT 267

Query: 2697 KNYKRKKIVADTEEVLSKEKEMLRKRVNSLIRSKRFMEAQKLLKNEGKKPWGRDTQAKLG 2518
            KNY+RK+IV D  +  SKEKE+LRKRVNSLIR +R  E QKL+KNE  KPWGRD QAKLG
Sbjct: 268  KNYQRKQIV-DEVQGASKEKEILRKRVNSLIRRRRLTEVQKLVKNEEIKPWGRDAQAKLG 326

Query: 2517 SRLVELLIESAYVQHPVNQAGDSPLDVLPAFRHRFKIIMKHPGQKITKRYGVVECDPLVL 2338
            SRL+ELL E+AYVQ P++Q+GDSPLDV PAFRH+FK I + PGQKI KRYGV+ECDPL+ 
Sbjct: 327  SRLLELLTETAYVQPPIDQSGDSPLDVRPAFRHKFKTISRGPGQKIKKRYGVIECDPLIR 386

Query: 2337 AGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQEALKSVTGDCM 2158
            +GLD+SAKHM+IPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQEALK V    M
Sbjct: 387  SGLDKSAKHMMIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQEALKGVNVKNM 446

Query: 2157 KKVLEALDTLGGTKWRVNKKVLSVLEDIWLSGGNIAGLVDRNDVPLPAKPFSEDLTEVQN 1978
            +KV EALDTLG TKWRVN KVL+V+E IW SGGNIAGLVDRND+P+P KP+SED TE+Q 
Sbjct: 447  RKVFEALDTLGSTKWRVNNKVLAVVESIWASGGNIAGLVDRNDIPIPEKPYSEDSTEIQE 506

Query: 1977 WKWSVRKAKKVNQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHL 1798
            WKWSVRKA KVN+ERHSQRCDTELKLSVARKM++EEGFYYPHNLDFRGRAYPMHPHLNHL
Sbjct: 507  WKWSVRKANKVNRERHSQRCDTELKLSVARKMENEEGFYYPHNLDFRGRAYPMHPHLNHL 566

Query: 1797 SSDVCRGVLEFAEGRPLGKSGLCWLKIHLANLFSGGVEKLSHDGRLAFVENHLNDIFDSA 1618
            SSD+CRGVLEFAEGRPLG+SGL WLKIHLANL+SGGVEKLSHDGRLAFV+NHL++IFDSA
Sbjct: 567  SSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLYSGGVEKLSHDGRLAFVDNHLDEIFDSA 626

Query: 1617 ENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALG 1438
            ENPING+RWWLTAEDPFQCLAAC+NLSEALKS+SPH++IS+LPIHQDGSCNGLQHYAALG
Sbjct: 627  ENPINGNRWWLTAEDPFQCLAACMNLSEALKSTSPHSMISYLPIHQDGSCNGLQHYAALG 686

Query: 1437 RNTLEAAAVNLVAGEKPADVYSEIAVRVHDIMKRDSNKDPSKHPHALLAKILIDQVDRKL 1258
            R+ LEAAAVNLVAGEKPADVYSEIAVRVH+IMKRDSNKDP+ +P+ALLAK+LIDQVDRKL
Sbjct: 687  RDNLEAAAVNLVAGEKPADVYSEIAVRVHNIMKRDSNKDPATNPNALLAKLLIDQVDRKL 746

Query: 1257 VKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFSSACYAAKVTLTALGEIFEAAR 1078
            VKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDR LFS+ACY AKVTL ALGE+F+AAR
Sbjct: 747  VKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLAALGELFQAAR 806

Query: 1077 SIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQREGNLVAI 898
            +IMGWLGDCAKVIASENQPVRWTTPLGLPVVQPY KSERHLIRT+LQVLALQREGN V +
Sbjct: 807  NIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYYKSERHLIRTTLQVLALQREGNSVEV 866

Query: 897  RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNEILRKKFV 718
            RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL+FAGVHDSFWTHACDV++MN+ILR+KFV
Sbjct: 867  RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLYFAGVHDSFWTHACDVEKMNQILREKFV 926

Query: 717  ELYNMPILENLLENFQTSHPMLSFPPLPDRGNFDLEEVLKSPYF 586
            ELY+MP+LENLLE+F+TS+P L FPPLP+RGNFDL+ VL   +F
Sbjct: 927  ELYSMPVLENLLESFETSYPTLVFPPLPERGNFDLQTVLACTFF 970


>ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
            gi|462398756|gb|EMJ04424.1| hypothetical protein
            PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score = 1483 bits (3838), Expect = 0.0
 Identities = 726/944 (76%), Positives = 817/944 (86%), Gaps = 3/944 (0%)
 Frame = -1

Query: 3402 PIRLCPLQDSLHSNFMENIENSGNFHLPSSEKDKIVHQRVEQIETFSDLGIPRSENSINH 3223
            P+ + PL+DS+  N    +ENS NF +P SE   I  Q                      
Sbjct: 63   PVHIPPLRDSIQDNI---VENSMNFQIPMSEFHLITPQ---------------------- 97

Query: 3222 QLLCLEPRRRIFVQDPPWISAIFLKGLYKRVKQQ---EDREMEKRKFNLLRRRQVKEETE 3052
                 E   RIF+QDPPWI+++FLKG+YKR  Q+   E +E+E+R +N+LRRRQ+K ETE
Sbjct: 98   -----ESAPRIFIQDPPWIASLFLKGIYKRANQELKLESKEIERRNYNVLRRRQIKAETE 152

Query: 3051 AWERMVDEYKELEAEMIEKRLAPNLPHIKGLFLGWFEPLREAIAREQKVQRTKKQKAAYA 2872
            AWERMVDEYK+LE  M EK+LAPNLP++K LFLGWFEPLREAIAREQK Q+TKK KAA+A
Sbjct: 153  AWERMVDEYKDLEKVMREKKLAPNLPYVKALFLGWFEPLREAIAREQKTQQTKKHKAAFA 212

Query: 2871 PHIELLPADKMAVIVMHKMMGLVMAGHEDGCVQVVQAAVHIGMAIEQEVRIHSFLEKTKN 2692
            PHI+LLPADKMA+IVMHKMMGLVM G++DGCVQVVQAAVHIGMAIEQEVRIHSFLEKTKN
Sbjct: 213  PHIDLLPADKMALIVMHKMMGLVMVGNQDGCVQVVQAAVHIGMAIEQEVRIHSFLEKTKN 272

Query: 2691 YKRKKIVADTEEVLSKEKEMLRKRVNSLIRSKRFMEAQKLLKNEGKKPWGRDTQAKLGSR 2512
             ++KK     E+ LSKEKE+LRKRVN LIR KR  E QKLL  E  KPWGRD QAKLGSR
Sbjct: 273  LQKKKTGVADEDGLSKEKEILRKRVNGLIRRKRLNEVQKLLIKEEMKPWGRDKQAKLGSR 332

Query: 2511 LVELLIESAYVQHPVNQAGDSPLDVLPAFRHRFKIIMKHPGQKITKRYGVVECDPLVLAG 2332
            L+ELL E+AYVQ P++Q  DSP DV PAFRHRFK + K PGQKI K YGV+ECDPLVL G
Sbjct: 333  LIELLTETAYVQPPLSQLADSPPDVRPAFRHRFKAVAKSPGQKIVKNYGVIECDPLVLTG 392

Query: 2331 LDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQEALKSVTGDCMKK 2152
            LD++AKHMLIPYVPMLVPPK+WKGYDKGG+LFLPSYVMRTHGSRKQ +A+++++ + M+K
Sbjct: 393  LDKTAKHMLIPYVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDAMRNISRNQMQK 452

Query: 2151 VLEALDTLGGTKWRVNKKVLSVLEDIWLSGGNIAGLVDRNDVPLPAKPFSEDLTEVQNWK 1972
            V EALD LG TKWRVNKKVLSV+E IW  GGNIAGLV+R DVP+P K  SEDL E+Q WK
Sbjct: 453  VFEALDMLGSTKWRVNKKVLSVVESIWARGGNIAGLVNREDVPVPDKSPSEDLKEIQEWK 512

Query: 1971 WSVRKAKKVNQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSS 1792
            WSVRKAKK+NQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSS
Sbjct: 513  WSVRKAKKINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSS 572

Query: 1791 DVCRGVLEFAEGRPLGKSGLCWLKIHLANLFSGGVEKLSHDGRLAFVENHLNDIFDSAEN 1612
            D+CRGVLEFAEGRPLGKSGL WLKIHLANL++GGVEKLS++GRLAFV+NH++DIFDSA N
Sbjct: 573  DLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVEKLSYEGRLAFVDNHIDDIFDSATN 632

Query: 1611 PINGSRWWLTAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRN 1432
            P+NG+RWWLTAEDP QCLAACINLSEAL S SPHTVISHLPIHQDGSCNGLQHYAALGR+
Sbjct: 633  PVNGNRWWLTAEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRD 692

Query: 1431 TLEAAAVNLVAGEKPADVYSEIAVRVHDIMKRDSNKDPSKHPHALLAKILIDQVDRKLVK 1252
            +LEAAAVNLV G+KPADVYSEIA RVH+IMKRDSNKDP+  P+ALLA+IL++Q+DRKLVK
Sbjct: 693  SLEAAAVNLVDGDKPADVYSEIAARVHEIMKRDSNKDPTTSPNALLARILVNQIDRKLVK 752

Query: 1251 QTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFSSACYAAKVTLTALGEIFEAARSI 1072
            QTVMTSVYGVT+VGAREQIKRRLEEKG ITDDR LF++ACYAAKVTL ALGEIF+AAR I
Sbjct: 753  QTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTLAALGEIFQAARGI 812

Query: 1071 MGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQREGNLVAIRK 892
            M WLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRE N V IRK
Sbjct: 813  MSWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRESNSVDIRK 872

Query: 891  QRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNEILRKKFVEL 712
            QRTAFPPNFVHSLDGSHMMMTA+ACRDAGL FAGVHDSFWTH CDVD+MNEILR+KFVEL
Sbjct: 873  QRTAFPPNFVHSLDGSHMMMTALACRDAGLRFAGVHDSFWTHPCDVDQMNEILREKFVEL 932

Query: 711  YNMPILENLLENFQTSHPMLSFPPLPDRGNFDLEEVLKSPYFFN 580
            Y+MPILE+LLE+FQ S+P L+FPPLP+RG+FDL +VL+SPYFFN
Sbjct: 933  YSMPILESLLESFQASYPALTFPPLPERGDFDLLQVLESPYFFN 976


>ref|XP_008243031.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Prunus mume]
          Length = 976

 Score = 1479 bits (3829), Expect = 0.0
 Identities = 725/944 (76%), Positives = 816/944 (86%), Gaps = 3/944 (0%)
 Frame = -1

Query: 3402 PIRLCPLQDSLHSNFMENIENSGNFHLPSSEKDKIVHQRVEQIETFSDLGIPRSENSINH 3223
            P+ + PL+DS+  N    +ENS NF +P SE   I  Q                      
Sbjct: 63   PVHIPPLRDSIQDNI---VENSMNFQIPMSEFHLITPQ---------------------- 97

Query: 3222 QLLCLEPRRRIFVQDPPWISAIFLKGLYKRVKQQ---EDREMEKRKFNLLRRRQVKEETE 3052
                 E   RIF+QDPPWI+++FLKG+YKR  Q+   E +E+E+R +NLLRRRQ+K ETE
Sbjct: 98   -----ESGPRIFIQDPPWIASLFLKGIYKRANQELKLESKEIERRNYNLLRRRQIKAETE 152

Query: 3051 AWERMVDEYKELEAEMIEKRLAPNLPHIKGLFLGWFEPLREAIAREQKVQRTKKQKAAYA 2872
            AWERMVDEYK+LE  M EK+LAPNLP++K LFLGWFEPLREAIAREQK Q+TKK KAA+A
Sbjct: 153  AWERMVDEYKDLEKVMREKKLAPNLPYVKALFLGWFEPLREAIAREQKTQQTKKHKAAFA 212

Query: 2871 PHIELLPADKMAVIVMHKMMGLVMAGHEDGCVQVVQAAVHIGMAIEQEVRIHSFLEKTKN 2692
            PHI+LLPADKMA+IVMHKMMGLVM G++DGCVQVVQAAVHIGMAIEQEVRIHSFLEKTKN
Sbjct: 213  PHIDLLPADKMALIVMHKMMGLVMVGNQDGCVQVVQAAVHIGMAIEQEVRIHSFLEKTKN 272

Query: 2691 YKRKKIVADTEEVLSKEKEMLRKRVNSLIRSKRFMEAQKLLKNEGKKPWGRDTQAKLGSR 2512
             ++KK     E+ LSKEKE+LRKRVN LIR KR  E QKLL  E  KPWGRD QAKLGSR
Sbjct: 273  LQKKKTGVADEDGLSKEKEILRKRVNGLIRRKRLNEVQKLLIKEEMKPWGRDKQAKLGSR 332

Query: 2511 LVELLIESAYVQHPVNQAGDSPLDVLPAFRHRFKIIMKHPGQKITKRYGVVECDPLVLAG 2332
            L+ELL E+AYVQ P++Q  +SP DV PAFRHRFK + K PGQKI K YGV+ECDPLVL G
Sbjct: 333  LIELLTETAYVQPPLSQLAESPPDVRPAFRHRFKAVAKSPGQKIVKNYGVIECDPLVLTG 392

Query: 2331 LDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQEALKSVTGDCMKK 2152
            LD++AKHMLIPYVPMLVPPK+WKGYDKGG+LFLPSYVMRTHGSRKQ +A+++++ + M+K
Sbjct: 393  LDKTAKHMLIPYVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDAMRNISRNQMQK 452

Query: 2151 VLEALDTLGGTKWRVNKKVLSVLEDIWLSGGNIAGLVDRNDVPLPAKPFSEDLTEVQNWK 1972
            V EALD LG TKWRVNKKVLSV+E IW  GGNIAGLV+R DVP+P K  SEDL E+Q WK
Sbjct: 453  VFEALDMLGSTKWRVNKKVLSVVESIWARGGNIAGLVNREDVPVPDKSPSEDLKEIQEWK 512

Query: 1971 WSVRKAKKVNQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSS 1792
            WSVRKAKK+NQERHS RCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSS
Sbjct: 513  WSVRKAKKINQERHSLRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSS 572

Query: 1791 DVCRGVLEFAEGRPLGKSGLCWLKIHLANLFSGGVEKLSHDGRLAFVENHLNDIFDSAEN 1612
            D+CRGVLEFAEGRPLGKSGL WLKIHLANL++GGVEKLS++GRLAFV+NH++DIFDSA N
Sbjct: 573  DLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVEKLSYEGRLAFVDNHIDDIFDSATN 632

Query: 1611 PINGSRWWLTAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRN 1432
            P+NG+RWWLTAEDP QCLAACINLSEAL S SPHTVISHLPIHQDGSCNGLQHYAALGR+
Sbjct: 633  PVNGNRWWLTAEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRD 692

Query: 1431 TLEAAAVNLVAGEKPADVYSEIAVRVHDIMKRDSNKDPSKHPHALLAKILIDQVDRKLVK 1252
            +LEAAAVNLV G+KPADVYSEIA RVH+IMKRDSNKDP+  P+ALLA+IL++Q+DRKLVK
Sbjct: 693  SLEAAAVNLVDGDKPADVYSEIAARVHEIMKRDSNKDPTTSPNALLARILVNQIDRKLVK 752

Query: 1251 QTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFSSACYAAKVTLTALGEIFEAARSI 1072
            QTVMTSVYGVT+VGAREQIKRRLEEKG ITDDR LF++ACYAAKVTL ALGEIF+AAR I
Sbjct: 753  QTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTLAALGEIFQAARGI 812

Query: 1071 MGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQREGNLVAIRK 892
            M WLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRE N V IRK
Sbjct: 813  MSWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRESNSVDIRK 872

Query: 891  QRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNEILRKKFVEL 712
            QRTAFPPNFVHSLDGSHMMMTA+ACRDAGL FAGVHDSFWTH CDVD+MNEILR+KFVEL
Sbjct: 873  QRTAFPPNFVHSLDGSHMMMTALACRDAGLRFAGVHDSFWTHPCDVDQMNEILREKFVEL 932

Query: 711  YNMPILENLLENFQTSHPMLSFPPLPDRGNFDLEEVLKSPYFFN 580
            Y+MPILE+LLE+FQ S+P L+FPPLP+RG+FDL +VL+SPYFFN
Sbjct: 933  YSMPILESLLESFQASYPALTFPPLPERGDFDLLQVLESPYFFN 976


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Fragaria
            vesca subsp. vesca]
          Length = 973

 Score = 1478 bits (3825), Expect = 0.0
 Identities = 715/945 (75%), Positives = 821/945 (86%), Gaps = 3/945 (0%)
 Frame = -1

Query: 3405 NPIRLCPLQDSLHSNFMENIENSGNFHLPSSEKDKIVHQRVEQIETFSDLGIPRSENSIN 3226
            +PI+  PL DS+  N +EN+ENS  F                         +P SE    
Sbjct: 66   DPIQFHPLNDSVQDNLVENLENSIKFQ------------------------VPISEP--- 98

Query: 3225 HQLLCLEPRRRIFVQDPPWISAIFLKGLYKRVKQQ---EDREMEKRKFNLLRRRQVKEET 3055
                      RIF+QDPPWI+++FLKG++K+V ++   E +E+++RK+NLLRRRQ+K ET
Sbjct: 99   ----------RIFIQDPPWIASLFLKGMFKKVNKELKVESKEIDRRKYNLLRRRQIKAET 148

Query: 3054 EAWERMVDEYKELEAEMIEKRLAPNLPHIKGLFLGWFEPLREAIAREQKVQRTKKQKAAY 2875
            EAWE+MV++YK+LE  M EK+LAP+LP++K LFLGWFEPLREAIA+EQK Q+TKK K A+
Sbjct: 149  EAWEKMVEDYKDLERVMREKKLAPSLPYVKALFLGWFEPLREAIAKEQKAQQTKKHKQAF 208

Query: 2874 APHIELLPADKMAVIVMHKMMGLVMAGHEDGCVQVVQAAVHIGMAIEQEVRIHSFLEKTK 2695
            APHI+LLPADKMA+IVMHK+MGLVM G++DGCVQVVQAAVHIGMAIEQEVRIHSFLEK+K
Sbjct: 209  APHIDLLPADKMALIVMHKLMGLVMMGNQDGCVQVVQAAVHIGMAIEQEVRIHSFLEKSK 268

Query: 2694 NYKRKKIVADTEEVLSKEKEMLRKRVNSLIRSKRFMEAQKLLKNEGKKPWGRDTQAKLGS 2515
            + +RKK     E+ LSKEKE+LRKRVN LIR KR +E QKLLK E  KPWGRDTQAKLGS
Sbjct: 269  SLQRKKTSVADEDGLSKEKEILRKRVNGLIRRKRLVEVQKLLKKEDMKPWGRDTQAKLGS 328

Query: 2514 RLVELLIESAYVQHPVNQAGDSPLDVLPAFRHRFKIIMKHPGQKITKRYGVVECDPLVLA 2335
            RL+ELL E+A+VQ P++Q  D P DV PAFRHR K   K PGQK+ K YGV+ECDPLVLA
Sbjct: 329  RLIELLTETAHVQPPLDQLADGPPDVRPAFRHRLKAAAKSPGQKLVKNYGVIECDPLVLA 388

Query: 2334 GLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQEALKSVTGDCMK 2155
            GLD++AKHMLIPYVPMLVPPK+WKGYDKGG+LFLPSYVMRTHGSRKQ + +++++G  M+
Sbjct: 389  GLDKTAKHMLIPYVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDTMRNISGRQMQ 448

Query: 2154 KVLEALDTLGGTKWRVNKKVLSVLEDIWLSGGNIAGLVDRNDVPLPAKPFSEDLTEVQNW 1975
            KV EALD LG TKWR+NKKVL+V+E IW  GGNIAGLVDR DVP+P KP SED TE+Q W
Sbjct: 449  KVFEALDMLGSTKWRINKKVLNVVESIWARGGNIAGLVDREDVPVPEKPPSEDPTEIQEW 508

Query: 1974 KWSVRKAKKVNQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLS 1795
            +WS RKAKK+NQERHSQRCDTELKLSVAR+MKDE+GFYYPHNLDFRGRAYPMHPHLNHLS
Sbjct: 509  RWSARKAKKLNQERHSQRCDTELKLSVARRMKDEDGFYYPHNLDFRGRAYPMHPHLNHLS 568

Query: 1794 SDVCRGVLEFAEGRPLGKSGLCWLKIHLANLFSGGVEKLSHDGRLAFVENHLNDIFDSAE 1615
            SD+CRGVLEFAEGRPLGKSGL WLKIHLANL+SGGVEKLS+DGR++FV+NH++DIFDSA 
Sbjct: 569  SDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYSGGVEKLSYDGRISFVDNHIDDIFDSAT 628

Query: 1614 NPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGR 1435
            NP+NG+RWWLTAEDP QCLAACINLSEAL S SPHTVISHLPIHQDGSCNGLQHYAALGR
Sbjct: 629  NPVNGNRWWLTAEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGR 688

Query: 1434 NTLEAAAVNLVAGEKPADVYSEIAVRVHDIMKRDSNKDPSKHPHALLAKILIDQVDRKLV 1255
            +TLEAAAVNLVAGEKPADVYSEIAVRVHDIMKRDSNKDP+ +P+ALLAK+L++Q+DRKLV
Sbjct: 689  DTLEAAAVNLVAGEKPADVYSEIAVRVHDIMKRDSNKDPTTNPNALLAKVLVNQIDRKLV 748

Query: 1254 KQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFSSACYAAKVTLTALGEIFEAARS 1075
            KQTVMTSVYGVT+VGAREQIKRRLEEKG ITDDR LF++ACYAAKVTL ALGEIF+AAR 
Sbjct: 749  KQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTLAALGEIFQAARG 808

Query: 1074 IMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQREGNLVAIR 895
            IM WLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRE NLV +R
Sbjct: 809  IMSWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRESNLVDVR 868

Query: 894  KQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNEILRKKFVE 715
            KQRTAFPPNFVHSLDGSHMMMTA+ACRDAG+ FAGVHDSFWTHACDVD+MN+ILR+ FVE
Sbjct: 869  KQRTAFPPNFVHSLDGSHMMMTALACRDAGIRFAGVHDSFWTHACDVDQMNQILRENFVE 928

Query: 714  LYNMPILENLLENFQTSHPMLSFPPLPDRGNFDLEEVLKSPYFFN 580
            LY+ PILENLLE+FQ ++P L+FPPLP+RG+FDL+EVLKSPYFFN
Sbjct: 929  LYSKPILENLLESFQAAYPELTFPPLPERGDFDLQEVLKSPYFFN 973


>ref|XP_012071554.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Jatropha
            curcas]
          Length = 993

 Score = 1476 bits (3820), Expect = 0.0
 Identities = 717/939 (76%), Positives = 827/939 (88%), Gaps = 3/939 (0%)
 Frame = -1

Query: 3387 PLQDSLHSNFMENIENSGNFHLPSSEKDKIVHQRVEQIETFSDLGIPRSENSINHQLLCL 3208
            PL D+   + +E+++NS    +P+          ++  E      +P S +S NHQ+L  
Sbjct: 71   PLHDATEEHLLEDMDNS----MPN----------LQNFENLIKFDLP-SCSSQNHQILGQ 115

Query: 3207 EPRRRIFVQDPPWISAIFLKGLYKRVKQQ---EDREMEKRKFNLLRRRQVKEETEAWERM 3037
            E  +R+F+QDPPWISA+FLKGLYK   ++   E +++EKRK+NLLRRRQ++EETEAWERM
Sbjct: 116  ESPKRVFIQDPPWISALFLKGLYKVANRKFKVEFKDIEKRKYNLLRRRQIREETEAWERM 175

Query: 3036 VDEYKELEAEMIEKRLAPNLPHIKGLFLGWFEPLREAIAREQKVQRTKKQKAAYAPHIEL 2857
             DEYK +  EM +K+LAPNLP++KGLFLGWFEPL+EAI  EQK+QR+KKQK+A+APHIEL
Sbjct: 176  ADEYKGMVREMCDKKLAPNLPYVKGLFLGWFEPLKEAIEAEQKLQRSKKQKSAFAPHIEL 235

Query: 2856 LPADKMAVIVMHKMMGLVMAGHEDGCVQVVQAAVHIGMAIEQEVRIHSFLEKTKNYKRKK 2677
            LPADKMA+IVMHKMMGL+M GHEDGCV VVQAAV IGMA+EQEVRIH+FLEKTK+++RK 
Sbjct: 236  LPADKMALIVMHKMMGLMMVGHEDGCVPVVQAAVQIGMAVEQEVRIHNFLEKTKSFQRKN 295

Query: 2676 IVADTEEVLSKEKEMLRKRVNSLIRSKRFMEAQKLLKNEGKKPWGRDTQAKLGSRLVELL 2497
             V D +E LSKEKE+LRKR+N+LIR KR ++ QKL++NE  KPWGRDTQAKLGSRLVELL
Sbjct: 296  AVGDAQESLSKEKEVLRKRINNLIRRKRLIQVQKLVRNEETKPWGRDTQAKLGSRLVELL 355

Query: 2496 IESAYVQHPVNQAGDSPLDVLPAFRHRFKIIMKHPGQKITKRYGVVECDPLVLAGLDRSA 2317
            IESA+VQ PVNQ+ D+  DV PAFRHRF+    +PG+KI KRYGV+ECDPLVLAGLD SA
Sbjct: 356  IESAFVQPPVNQSPDTLPDVRPAFRHRFRTA-NNPGRKIMKRYGVIECDPLVLAGLDGSA 414

Query: 2316 KHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQEALKSVTGDCMKKVLEAL 2137
            KHM+IPY PMLVPPKKWKGYDKGG+ FLPS++MRTHGSRKQQ+ALK V G  M+KV EAL
Sbjct: 415  KHMMIPYFPMLVPPKKWKGYDKGGHFFLPSFLMRTHGSRKQQDALKHVPGKNMQKVFEAL 474

Query: 2136 DTLGGTKWRVNKKVLSVLEDIWLSGGNIAGLVDRNDVPLPAKPFSEDLTEVQNWKWSVRK 1957
            DTLG TKWRVN++VL V+E IW  GGNIAGLVDR D+P+P KP SEDLTE+Q W+WS+RK
Sbjct: 475  DTLGNTKWRVNRRVLDVVESIWAGGGNIAGLVDRADIPIPEKPISEDLTEIQKWRWSMRK 534

Query: 1956 AKKVNQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRG 1777
            AKK+N+E HSQRCDTELKLSVARK+KDE+GFYYPHNLDFRGRAYPMHPHL+HLSSD+ RG
Sbjct: 535  AKKINREMHSQRCDTELKLSVARKLKDEDGFYYPHNLDFRGRAYPMHPHLSHLSSDLSRG 594

Query: 1776 VLEFAEGRPLGKSGLCWLKIHLANLFSGGVEKLSHDGRLAFVENHLNDIFDSAENPINGS 1597
            +LEFAEGRPLGKSGL WLKIHLANL+SGGV+KLSH+GRLAFVENHL++IFDSA NP++G 
Sbjct: 595  ILEFAEGRPLGKSGLHWLKIHLANLYSGGVKKLSHEGRLAFVENHLDEIFDSAANPVHGK 654

Query: 1596 RWWLTAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRNTLEAA 1417
            RWWL AEDPFQCLAACINLSEALKSSSP+ VISHLPIHQDGSCNGLQHYAALGRN+LEAA
Sbjct: 655  RWWLMAEDPFQCLAACINLSEALKSSSPYNVISHLPIHQDGSCNGLQHYAALGRNSLEAA 714

Query: 1416 AVNLVAGEKPADVYSEIAVRVHDIMKRDSNKDPSKHPHALLAKILIDQVDRKLVKQTVMT 1237
            AVNLVAGEKPADVY+EIAVRVH+I+ +DS+KDP+ +P+ALLAK+LIDQVDRKLVKQTVMT
Sbjct: 715  AVNLVAGEKPADVYTEIAVRVHEIILKDSSKDPATNPNALLAKLLIDQVDRKLVKQTVMT 774

Query: 1236 SVYGVTFVGAREQIKRRLEEKGHITDDRQLFSSACYAAKVTLTALGEIFEAARSIMGWLG 1057
            SVYGVT+VGAREQIKRRLEEKGHITDDR LFS+ACY AKVT+ ALGE+F+AAR IM WLG
Sbjct: 775  SVYGVTYVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTMKALGELFQAARDIMSWLG 834

Query: 1056 DCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQREGNLVAIRKQRTAF 877
            DCAKVIASE+QPVRWTTPLGLPVVQPY KS+RHLIRTSLQVLALQREG+ V +RKQRTAF
Sbjct: 835  DCAKVIASEDQPVRWTTPLGLPVVQPYFKSKRHLIRTSLQVLALQREGSSVEVRKQRTAF 894

Query: 876  PPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNEILRKKFVELYNMPI 697
            PPNFVHSLDGSHMMMTAVACRDA L FAGVHDSFWTHACDVD MN ILR KFVELY MPI
Sbjct: 895  PPNFVHSLDGSHMMMTAVACRDADLRFAGVHDSFWTHACDVDLMNRILRDKFVELYRMPI 954

Query: 696  LENLLENFQTSHPMLSFPPLPDRGNFDLEEVLKSPYFFN 580
            LENLLE+FQTS+P L+FPPLP+RGNFDL+EVLKSPYFFN
Sbjct: 955  LENLLEDFQTSYPALTFPPLPERGNFDLQEVLKSPYFFN 993


>ref|XP_011018068.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Populus
            euphratica]
          Length = 983

 Score = 1474 bits (3816), Expect = 0.0
 Identities = 724/986 (73%), Positives = 832/986 (84%), Gaps = 9/986 (0%)
 Frame = -1

Query: 3510 RDDKSFKSLHFL-----HXXXXXXXXXXXXXXXXXXXXSANP-IRLCPLQDSLHSNFMEN 3349
            R  K +K+LHFL     H                      NP +   PL DS H   +E+
Sbjct: 21   RFHKPYKNLHFLSNPTSHSLSNPSSIYSSSFPLNSKFPLLNPSLPFHPLHDSSHDRLLED 80

Query: 3348 IENSGNFHLPSSEKDKIVHQRVEQIETFSDLGIPRSENSINHQLLCLEPRRRIFVQDPPW 3169
                  F +P+       HQ++E +  F              Q++  E  +R+F+QDPPW
Sbjct: 81   ------FEIPTI----CSHQKLETLIKFD-------------QIMHGESSKRVFIQDPPW 117

Query: 3168 ISAIFLKGLYKRVKQQ---EDREMEKRKFNLLRRRQVKEETEAWERMVDEYKELEAEMIE 2998
            ISA F KG+YK   ++   E +++EKRK+NLLRRRQ++EETEAWERM DEY+ L  EM E
Sbjct: 118  ISAHFWKGVYKIANKKVKVEFKDIEKRKYNLLRRRQIREETEAWERMADEYRGLVREMCE 177

Query: 2997 KRLAPNLPHIKGLFLGWFEPLREAIAREQKVQRTKKQKAAYAPHIELLPADKMAVIVMHK 2818
            ++LAPNLP++KGL LGWFEPL+EAI +EQK++++KKQK+A++P+IELLPADKMAVIVMHK
Sbjct: 178  RKLAPNLPYVKGLLLGWFEPLKEAIEKEQKMEKSKKQKSAFSPNIELLPADKMAVIVMHK 237

Query: 2817 MMGLVMAGHEDGCVQVVQAAVHIGMAIEQEVRIHSFLEKTKNYKRKKIVADTEEVLSKEK 2638
            MMGL+M GHEDGCV+VVQAAV IGMAIEQEVRIH+FLEKTKN++RKK + D +E + KEK
Sbjct: 238  MMGLLMVGHEDGCVRVVQAAVQIGMAIEQEVRIHNFLEKTKNHQRKKTMHDVQESMDKEK 297

Query: 2637 EMLRKRVNSLIRSKRFMEAQKLLKNEGKKPWGRDTQAKLGSRLVELLIESAYVQHPVNQA 2458
            EMLRKRVNSLIR KR ME Q L+K +  KPW R TQAKLGSRL+ELL E+AYVQ PVNQ+
Sbjct: 298  EMLRKRVNSLIRRKRLMEVQNLVKQDETKPWSRGTQAKLGSRLIELLTETAYVQPPVNQS 357

Query: 2457 GDSPLDVLPAFRHRFKIIMKHPGQKITKRYGVVECDPLVLAGLDRSAKHMLIPYVPMLVP 2278
             D P DV PAFRH FK + K+PGQKI K+YGV+ECDPL+L GLD +AKHMLIPY PMLVP
Sbjct: 358  EDIPPDVRPAFRHIFKTLTKNPGQKIVKKYGVIECDPLILTGLDGTAKHMLIPYFPMLVP 417

Query: 2277 PKKWKGYDKGGYLFLPSYVMRTHGSRKQQEALKSVTGDCMKKVLEALDTLGGTKWRVNKK 2098
            PKKWKGYDKGG+LFLPSY+MRTHGSR+QQ A++SV G  M+KV EALDTLG TKWRVN++
Sbjct: 418  PKKWKGYDKGGHLFLPSYIMRTHGSRQQQVAVRSVPGKQMQKVFEALDTLGNTKWRVNRR 477

Query: 2097 VLSVLEDIWLSGGNIAGLVDRNDVPLPAKPFSEDLTEVQNWKWSVRKAKKVNQERHSQRC 1918
            +L V+E IW SGGNIAGLVDR D+P+P KP S+DLTE+Q WKWSVRKAKK+NQERHSQRC
Sbjct: 478  LLDVVERIWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQKWKWSVRKAKKINQERHSQRC 537

Query: 1917 DTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKS 1738
            DTELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHL HLSSD+CRGVLEF EGRPLGKS
Sbjct: 538  DTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFEEGRPLGKS 597

Query: 1737 GLCWLKIHLANLFSGGVEKLSHDGRLAFVENHLNDIFDSAENPINGSRWWLTAEDPFQCL 1558
            GL WLKIHLANL+SGGVEKLSHDGRLAFVENHL++IFDSA+NP+NG RWWL AEDPFQCL
Sbjct: 598  GLRWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAKNPVNGKRWWLKAEDPFQCL 657

Query: 1557 AACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADV 1378
            AACINLSEAL S+SPHTVISHLPIHQDGSCNGLQHYAALGR++LEAAAVNLVA EKP+DV
Sbjct: 658  AACINLSEALNSASPHTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAAEKPSDV 717

Query: 1377 YSEIAVRVHDIMKRDSNKDPSKHPHALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 1198
            YSEIAVRVH+I++RDSNKDP+ +PHALLAKIL+DQVDRKLVKQTVMTSVYGVT+VGAREQ
Sbjct: 718  YSEIAVRVHEIIRRDSNKDPATNPHALLAKILVDQVDRKLVKQTVMTSVYGVTYVGAREQ 777

Query: 1197 IKRRLEEKGHITDDRQLFSSACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPV 1018
            IKRRLEEKGHITDDR LFS+ACY AKVTLTALGE+F+AAR IM WLGDCAK+IASE+QPV
Sbjct: 778  IKRRLEEKGHITDDRLLFSAACYTAKVTLTALGELFQAARDIMSWLGDCAKIIASEDQPV 837

Query: 1017 RWTTPLGLPVVQPYCKSERHLIRTSLQVLALQREGNLVAIRKQRTAFPPNFVHSLDGSHM 838
            +WTTPLGLPVVQPY K ERHLI+TSLQ+LALQREG+ V +RKQRTAFPPNFVHSLDGSHM
Sbjct: 838  QWTTPLGLPVVQPYYKRERHLIKTSLQILALQREGSSVQVRKQRTAFPPNFVHSLDGSHM 897

Query: 837  MMTAVACRDAGLHFAGVHDSFWTHACDVDEMNEILRKKFVELYNMPILENLLENFQTSHP 658
            MMTAVACRDAGL FAGVHDSFWTHA DVD MN ILR+KFVELYNMPILENLLE+FQTS+P
Sbjct: 898  MMTAVACRDAGLCFAGVHDSFWTHARDVDLMNRILREKFVELYNMPILENLLEDFQTSYP 957

Query: 657  MLSFPPLPDRGNFDLEEVLKSPYFFN 580
             L FPPLP+RGNFDL++VL+SPYFFN
Sbjct: 958  TLKFPPLPERGNFDLQKVLRSPYFFN 983


>ref|XP_002325119.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222866553|gb|EEF03684.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 882

 Score = 1469 bits (3803), Expect = 0.0
 Identities = 701/879 (79%), Positives = 798/879 (90%), Gaps = 3/879 (0%)
 Frame = -1

Query: 3207 EPRRRIFVQDPPWISAIFLKGLYKRVKQQ---EDREMEKRKFNLLRRRQVKEETEAWERM 3037
            E  +++F+QDPPWISA F KG+YK   ++   E +++EKRK+NLLRRRQ++EETEAWERM
Sbjct: 4    ESSKKVFIQDPPWISAHFWKGMYKLANKKVKVEFKDIEKRKYNLLRRRQIREETEAWERM 63

Query: 3036 VDEYKELEAEMIEKRLAPNLPHIKGLFLGWFEPLREAIAREQKVQRTKKQKAAYAPHIEL 2857
             DEY+ L  EM E++LAPNLP++KGL LGWFEPL+EAI +EQK++++KKQK+A++P+IEL
Sbjct: 64   ADEYRGLVREMCERKLAPNLPYVKGLLLGWFEPLKEAIEKEQKMEKSKKQKSAFSPNIEL 123

Query: 2856 LPADKMAVIVMHKMMGLVMAGHEDGCVQVVQAAVHIGMAIEQEVRIHSFLEKTKNYKRKK 2677
            LPADKMAVIVMHKMMGL+M GHEDGCV+VVQAAV IGMAIEQEVRIH+FLEKTKNY+RKK
Sbjct: 124  LPADKMAVIVMHKMMGLLMVGHEDGCVRVVQAAVQIGMAIEQEVRIHNFLEKTKNYQRKK 183

Query: 2676 IVADTEEVLSKEKEMLRKRVNSLIRSKRFMEAQKLLKNEGKKPWGRDTQAKLGSRLVELL 2497
             + + +E + KEKE+LRKRVNSLIR KR ME Q L+K +  KPW R TQAKLGSRL+ELL
Sbjct: 184  TMHEVQETMDKEKEVLRKRVNSLIRRKRLMEVQNLVKQDETKPWSRGTQAKLGSRLIELL 243

Query: 2496 IESAYVQHPVNQAGDSPLDVLPAFRHRFKIIMKHPGQKITKRYGVVECDPLVLAGLDRSA 2317
             E+AYVQ PVNQ+ D P DV PAFRH FK + K+PGQKI K+YGV+ECDPL+L GLD +A
Sbjct: 244  TETAYVQPPVNQSEDIPPDVRPAFRHIFKTLTKNPGQKIVKKYGVIECDPLILTGLDGTA 303

Query: 2316 KHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQEALKSVTGDCMKKVLEAL 2137
            KHMLIPY PMLVPPKKWKGYDKGG+LFLPSYVMRTHGSR+QQ A++SV G  M+KV EAL
Sbjct: 304  KHMLIPYFPMLVPPKKWKGYDKGGHLFLPSYVMRTHGSRQQQVAVRSVPGKQMQKVFEAL 363

Query: 2136 DTLGGTKWRVNKKVLSVLEDIWLSGGNIAGLVDRNDVPLPAKPFSEDLTEVQNWKWSVRK 1957
            DTLG TKWRVN+++L V+E IW SGGNIAGLVDR D+P+P KP S+DLTE+Q WKWSVRK
Sbjct: 364  DTLGNTKWRVNRRLLDVVERIWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQKWKWSVRK 423

Query: 1956 AKKVNQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRG 1777
            AKK+NQERHSQRCDTELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHL HLSSD+CRG
Sbjct: 424  AKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRG 483

Query: 1776 VLEFAEGRPLGKSGLCWLKIHLANLFSGGVEKLSHDGRLAFVENHLNDIFDSAENPINGS 1597
            VLEF EGRPLGKSGL WLKIHLANL+SGGVEKLSHDGRLAFVENHL++IFDSA+NP+NG 
Sbjct: 484  VLEFEEGRPLGKSGLRWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAKNPVNGK 543

Query: 1596 RWWLTAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRNTLEAA 1417
            RWWL AEDPFQCLAACINLSEAL S+SPHTVISHLPIHQDGSCNGLQHYAALGR+TLEAA
Sbjct: 544  RWWLKAEDPFQCLAACINLSEALNSASPHTVISHLPIHQDGSCNGLQHYAALGRDTLEAA 603

Query: 1416 AVNLVAGEKPADVYSEIAVRVHDIMKRDSNKDPSKHPHALLAKILIDQVDRKLVKQTVMT 1237
            AVNLVA EKP+DVYSEIAVRVH+I++RDSNKDP+ +PHALLAKIL+DQVDRKLVKQTVMT
Sbjct: 604  AVNLVAAEKPSDVYSEIAVRVHEIIRRDSNKDPATNPHALLAKILVDQVDRKLVKQTVMT 663

Query: 1236 SVYGVTFVGAREQIKRRLEEKGHITDDRQLFSSACYAAKVTLTALGEIFEAARSIMGWLG 1057
            SVYGVT+VGAREQIKRRLEEKGHITDDR LFS+ACY AKVTLTALGE+F+AAR IM WLG
Sbjct: 664  SVYGVTYVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLTALGELFQAARDIMSWLG 723

Query: 1056 DCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQREGNLVAIRKQRTAF 877
            DCAK+IASE+QPV+WTTPLGLPVVQPY K+ERHLI+TSLQ+LALQREG+ V +RKQRTAF
Sbjct: 724  DCAKIIASEDQPVQWTTPLGLPVVQPYYKTERHLIKTSLQILALQREGSSVQVRKQRTAF 783

Query: 876  PPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNEILRKKFVELYNMPI 697
            PPNFVHSLDGSHMMMTAVACRDAGL FAGVHDSFWTHA DVD MN ILR+KFVELYNMPI
Sbjct: 784  PPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHATDVDLMNRILREKFVELYNMPI 843

Query: 696  LENLLENFQTSHPMLSFPPLPDRGNFDLEEVLKSPYFFN 580
            LENLLE+FQTS+P L FPPLP+RGNFDL++VL+SPYFFN
Sbjct: 844  LENLLEDFQTSYPTLQFPPLPERGNFDLQKVLRSPYFFN 882


>ref|XP_009366215.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Pyrus x
            bretschneideri]
          Length = 972

 Score = 1468 bits (3800), Expect = 0.0
 Identities = 709/898 (78%), Positives = 802/898 (89%), Gaps = 11/898 (1%)
 Frame = -1

Query: 3240 ENSINHQLLCLE--------PRRRIFVQDPPWISAIFLKGLYKRVKQQ---EDREMEKRK 3094
            ENS+N QL   E           RIF+QDPPWI+A+FLKG+YK+  Q+   E +E+++RK
Sbjct: 75   ENSMNLQLPIREFHLITPDESAPRIFIQDPPWIAALFLKGMYKKANQELKLESKEIDRRK 134

Query: 3093 FNLLRRRQVKEETEAWERMVDEYKELEAEMIEKRLAPNLPHIKGLFLGWFEPLREAIARE 2914
            +NLLRRRQ+K ETEAWERMV+EYK+LE  M EK+LAP+LP++K LFLGWFEPLREAIARE
Sbjct: 135  YNLLRRRQIKAETEAWERMVEEYKDLERVMREKKLAPSLPYVKTLFLGWFEPLREAIARE 194

Query: 2913 QKVQRTKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMAGHEDGCVQVVQAAVHIGMAIE 2734
            Q+VQ+TKK KAA+APHI+LLP DKMA+IVMHKMMGLVM G++DGCVQVVQAAVHIGMAIE
Sbjct: 195  QQVQQTKKHKAAFAPHIDLLPPDKMALIVMHKMMGLVMVGNQDGCVQVVQAAVHIGMAIE 254

Query: 2733 QEVRIHSFLEKTKNYKRKKIVADTEEVLSKEKEMLRKRVNSLIRSKRFMEAQKLLKNEGK 2554
            QEVRIHSFLEKTKN++RKK     E+ L KEKE+LRKRVN LI+ KR  E QKLL  E  
Sbjct: 255  QEVRIHSFLEKTKNFQRKKTAVADEDSLIKEKEILRKRVNVLIKRKRLREVQKLLVKEEF 314

Query: 2553 KPWGRDTQAKLGSRLVELLIESAYVQHPVNQAGDSPLDVLPAFRHRFKIIMKHPGQKITK 2374
            KPWGRDTQAKLGSRL+ELL E+AYVQ P+NQ  D P DV PAFRHRFK   K PGQK+ K
Sbjct: 315  KPWGRDTQAKLGSRLIELLTETAYVQPPLNQLADGPPDVRPAFRHRFKAAAKTPGQKLVK 374

Query: 2373 RYGVVECDPLVLAGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQ 2194
             YGV+ECDPLVL GLD++AKHMLIPYVPMLVPP+KWKGYDKGG+LFLPSYVMRTHGSRKQ
Sbjct: 375  NYGVIECDPLVLTGLDKTAKHMLIPYVPMLVPPRKWKGYDKGGHLFLPSYVMRTHGSRKQ 434

Query: 2193 QEALKSVTGDCMKKVLEALDTLGGTKWRVNKKVLSVLEDIWLSGGNIAGLVDRNDVPLPA 2014
             + +++++G  M+KV EALD LG TKWRVNKKVL+V+E IW  GGNIAGLVDR DVP+P 
Sbjct: 435  VDTMRNISGKQMQKVFEALDMLGSTKWRVNKKVLNVVESIWARGGNIAGLVDREDVPVPD 494

Query: 2013 KPFSEDLTEVQNWKWSVRKAKKVNQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRG 1834
            KP  E LTE+Q WKWSVRKAKK+NQERHS RCDTELKLSVARKMKDEEGFYYPHNLDFRG
Sbjct: 495  KPPLEGLTEIQEWKWSVRKAKKINQERHSLRCDTELKLSVARKMKDEEGFYYPHNLDFRG 554

Query: 1833 RAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLCWLKIHLANLFSGGVEKLSHDGRLAF 1654
            RAYPMHPHLNHLSSD+CRGVLEFAEGRPLGKSGL WLKIHLANL++GGVEKLS++ R AF
Sbjct: 555  RAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVEKLSYEERHAF 614

Query: 1653 VENHLNDIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDG 1474
            V++H++DIFDSA NP+NG+RWWLTAEDP QCLAACINLSEAL S SPHTVISHLPIHQDG
Sbjct: 615  VDHHIDDIFDSATNPVNGNRWWLTAEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDG 674

Query: 1473 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHDIMKRDSNKDPSKHPHALL 1294
            SCNGLQHYAALGR++LEAAAVNLVAGEKPADVYSEIA RVH+IM+RDSNKDP+  P+ALL
Sbjct: 675  SCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSEIAARVHEIMERDSNKDPTTSPNALL 734

Query: 1293 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFSSACYAAKVT 1114
            A++L++Q+DRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKG ITDDR LF++ACYAAKVT
Sbjct: 735  ARVLVNQIDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGFITDDRLLFTAACYAAKVT 794

Query: 1113 LTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQV 934
            L ALGEIF+AAR IMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCK+ERHLIRTSLQV
Sbjct: 795  LAALGEIFQAARGIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQV 854

Query: 933  LALQREGNLVAIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDV 754
            LALQRE N + +RKQRTAFPPNFVHSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHACDV
Sbjct: 855  LALQRESNSIDVRKQRTAFPPNFVHSLDGSHMMMTALACRDAGLRFAGVHDSFWTHACDV 914

Query: 753  DEMNEILRKKFVELYNMPILENLLENFQTSHPMLSFPPLPDRGNFDLEEVLKSPYFFN 580
            D+MNEILR+KF+ELY+MPILENLLE+FQ S+P L+FPPLP+RG+FDL+EVL+SPYFFN
Sbjct: 915  DQMNEILREKFIELYSMPILENLLESFQASYPALTFPPLPERGDFDLQEVLESPYFFN 972


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
            vinifera]
          Length = 979

 Score = 1465 bits (3792), Expect = 0.0
 Identities = 718/938 (76%), Positives = 813/938 (86%), Gaps = 6/938 (0%)
 Frame = -1

Query: 3375 SLHSNFMENIENSGNFHLPSSEKDKIVHQRVEQIETFSDLGIPRSENSINHQLLCLEPRR 3196
            ++  N + +     NFH PS   +         +   ++  I   ++S N Q+   E   
Sbjct: 46   TISKNSLSSSSFRHNFHSPSHSSNSEAQCHALPLSPTNN-SIETLQDSSNIQVK--ESIP 102

Query: 3195 RIFVQDPPWISAIFLKGLYKRVKQQ------EDREMEKRKFNLLRRRQVKEETEAWERMV 3034
            RIFVQDPPWIS+       +R ++       E RE E+R + LLRRRQVK ETEAWERMV
Sbjct: 103  RIFVQDPPWISSFLFHDWCERNRRTGQNVKLEFRETERRNYGLLRRRQVKAETEAWERMV 162

Query: 3033 DEYKELEAEMIEKRLAPNLPHIKGLFLGWFEPLREAIAREQKVQRTKKQKAAYAPHIELL 2854
            +EY+E+E EM EK+LAPNLP++K LFLGWFEPLREAI +EQ+ QRTKKQKAAYAPHIELL
Sbjct: 163  EEYREIEREMCEKKLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYAPHIELL 222

Query: 2853 PADKMAVIVMHKMMGLVMAGHEDGCVQVVQAAVHIGMAIEQEVRIHSFLEKTKNYKRKKI 2674
            PADKMAVIVMHKMMGLVM GHE+GCV+VVQAAV IGMAIEQEVRIHSFLEKTKN++R K 
Sbjct: 223  PADKMAVIVMHKMMGLVMMGHEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHKT 282

Query: 2673 VADTEEVLSKEKEMLRKRVNSLIRSKRFMEAQKLLKNEGKKPWGRDTQAKLGSRLVELLI 2494
            V  ++E L +EKE+LRKRV S IR K+ +E QKL+KNE   PWGRDTQAKLGSRL+ELL 
Sbjct: 283  VGHSQEGL-REKEILRKRVKSFIRKKKIIEVQKLVKNEEITPWGRDTQAKLGSRLIELLT 341

Query: 2493 ESAYVQHPVNQAGDSPLDVLPAFRHRFKIIMKHPGQKITKRYGVVECDPLVLAGLDRSAK 2314
            E+AYVQ PVNQ+ D P DV PAFRH FK + K  GQK  ++YGV+ECDPLVL GLDR+AK
Sbjct: 342  ETAYVQTPVNQSADCPPDVRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAK 401

Query: 2313 HMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQEALKSVTGDCMKKVLEALD 2134
            HM+IPYVPML+PPKKWKGYDKGGYLFLPSYVMRTHGSRKQQ+A+KSV    ++KV EALD
Sbjct: 402  HMVIPYVPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALD 461

Query: 2133 TLGGTKWRVNKKVLSVLEDIWLSGGNIAGLVDRNDVPLPAKPFSEDLTEVQNWKWSVRKA 1954
            TLG TKWR+N++VLSV+E IW  GGN+ GLVDR +VPLP KP +EDLTE+QNWKW+ RKA
Sbjct: 462  TLGNTKWRINRRVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKA 521

Query: 1953 KKVNQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 1774
            KK+NQERHS RCDTE+KLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRGV
Sbjct: 522  KKINQERHSLRCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGV 581

Query: 1773 LEFAEGRPLGKSGLCWLKIHLANLFSGGVEKLSHDGRLAFVENHLNDIFDSAENPINGSR 1594
            LEFAEGRPLGKSGL WLKI LANL++GGVEKLS+DGRLAFV+NHL+D+FDSA+NP+NG+R
Sbjct: 582  LEFAEGRPLGKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNR 641

Query: 1593 WWLTAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRNTLEAAA 1414
            WWLTAEDPFQCLAACINLSEAL+SSSPHTVISHLPIHQDGSCNGLQHYAALGRN+LEA+A
Sbjct: 642  WWLTAEDPFQCLAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEASA 701

Query: 1413 VNLVAGEKPADVYSEIAVRVHDIMKRDSNKDPSKHPHALLAKILIDQVDRKLVKQTVMTS 1234
            VNLVAGEKPADVYSEIA RVH+IMKRDSNKDP+  P ALLAK+LI QVDRKLVKQTVMTS
Sbjct: 702  VNLVAGEKPADVYSEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMTS 761

Query: 1233 VYGVTFVGAREQIKRRLEEKGHITDDRQLFSSACYAAKVTLTALGEIFEAARSIMGWLGD 1054
            VYGVT++GAREQIKRRL EKG ITD+R LF++ACYAAKVTL ALGEIF+AAR IM WLG+
Sbjct: 762  VYGVTYIGAREQIKRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAARDIMAWLGE 821

Query: 1053 CAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQREGNLVAIRKQRTAFP 874
            CAKVIASENQPV+WTTPLGLPV+QPYCKSERHLIRTSLQVLALQREG++V IRKQRTAFP
Sbjct: 822  CAKVIASENQPVQWTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVVIRKQRTAFP 881

Query: 873  PNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNEILRKKFVELYNMPIL 694
            PNFVHSLDGSHMMMTAVACRDAGL FAGVHDSFWTHACDVD+MN+ILR+KFVELY+MPIL
Sbjct: 882  PNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHACDVDKMNQILREKFVELYSMPIL 941

Query: 693  ENLLENFQTSHPMLSFPPLPDRGNFDLEEVLKSPYFFN 580
            ENLLE+FQTSHP L+FPPLPDRGNFDL EVL+SPYFFN
Sbjct: 942  ENLLESFQTSHPTLTFPPLPDRGNFDLREVLESPYFFN 979


>ref|XP_007013878.1| DNA/RNA polymerases superfamily protein isoform 2 [Theobroma cacao]
            gi|508784241|gb|EOY31497.1| DNA/RNA polymerases
            superfamily protein isoform 2 [Theobroma cacao]
          Length = 857

 Score = 1461 bits (3782), Expect = 0.0
 Identities = 710/850 (83%), Positives = 791/850 (93%), Gaps = 3/850 (0%)
 Frame = -1

Query: 3120 EDREMEKRKFNLLRRRQVKEETEAWERMVDEYKELEAEMIEKRLAPNLPHIKGLFLGWFE 2941
            E +E+EKRK+NLLRRRQVKEETEAWE+MV+EY+EL+ EM EK+LAPNLP++KGLFLGWFE
Sbjct: 9    EHKEIEKRKYNLLRRRQVKEETEAWEKMVEEYRELQREMCEKKLAPNLPYVKGLFLGWFE 68

Query: 2940 PLREAIAREQKVQR--TKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMAGHEDGCVQVV 2767
            P+REAIAREQKVQ+  +KK +AAYAPHIELLPADKMAVIVMHKMMGLVM   E+G VQVV
Sbjct: 69   PMREAIAREQKVQKGKSKKLRAAYAPHIELLPADKMAVIVMHKMMGLVMGAQENGFVQVV 128

Query: 2766 QAAVHIGMAIEQEVRIHSFLEKTKNYKRKKIVADTEEVLSKEKEMLRKRVNSLIRSKRFM 2587
            QAAVHIG+AIEQEVRIH+FLEKTKNY+RKK   D  + LSKEKE+L+KRVNSLIR +R +
Sbjct: 129  QAAVHIGVAIEQEVRIHNFLEKTKNYQRKK-TTDEVQGLSKEKEILKKRVNSLIRRRRLV 187

Query: 2586 EAQKLLKNEGKKPWGRDTQAKLGSRLVELLIESAYVQHPVNQAGDSPLDVLPAFRHRFKI 2407
            E QKL+KNE  KPWGRD QAKLGSRL+ELL E+AYVQ P++Q+GDSP DV PAFRH+FK 
Sbjct: 188  EVQKLVKNEEIKPWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPPDVQPAFRHKFKT 247

Query: 2406 IMKHPGQKITKRYGVVECDPLVLAGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPS 2227
            I K PG+K+ KRYGV+ECDPL+L+GLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPS
Sbjct: 248  ISKDPGKKMMKRYGVIECDPLILSGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPS 307

Query: 2226 YVMRTHGSRKQQEALKSVTGDCMKKVLEALDTLGGTKWRVNKKVLSVLEDIWLSGGNIAG 2047
            YVMRTHGSRKQQ+ALK V    M+KV EALDTLG TKWRVNKKVL+V+E IW SGGNIAG
Sbjct: 308  YVMRTHGSRKQQDALKGVHVKKMQKVFEALDTLGSTKWRVNKKVLAVVESIWASGGNIAG 367

Query: 2046 LVDRNDVPLPAKPFSEDLTEVQNWKWSVRKAKKVNQERHSQRCDTELKLSVARKMKDEEG 1867
            LVDRND+P+P KP SED TE Q WKWSVRKA K+N+ERHSQRCDTELKLSVARKM++EEG
Sbjct: 368  LVDRNDIPIPEKPSSEDSTESQEWKWSVRKANKINRERHSQRCDTELKLSVARKMENEEG 427

Query: 1866 FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLCWLKIHLANLFSGGV 1687
            FYYPHNLDFRGRAYPMHPHLNHLSSD+CRGVLEFAEGRPLG+SGL WLKIHLANLF+GGV
Sbjct: 428  FYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLFAGGV 487

Query: 1686 EKLSHDGRLAFVENHLNDIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHT 1507
            EKLSHDGRLAFV+NHL+DIFDSAENPING+RWWLTAEDPFQCLAACINLSE+LKSSSPH+
Sbjct: 488  EKLSHDGRLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQCLAACINLSESLKSSSPHS 547

Query: 1506 VISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHDIMKRDSN 1327
            V+S+LPIHQDGSCNGLQHYAALGR++LEAAAVNLVAGEKPADVYSEIAVRVH+IMKRDS+
Sbjct: 548  VLSYLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSEIAVRVHNIMKRDSD 607

Query: 1326 KDPSKHPHALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL 1147
            KDP+ +P+A LAK+LIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDR L
Sbjct: 608  KDPATNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRVL 667

Query: 1146 FSSACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKS 967
            F++ACY AKVTL ALGE+F+AAR+IMGWLGDCAKVIASENQPV+WTTPLGLPVVQPY KS
Sbjct: 668  FAAACYTAKVTLAALGELFQAARNIMGWLGDCAKVIASENQPVQWTTPLGLPVVQPYYKS 727

Query: 966  ERHLIRTSLQVLALQREG-NLVAIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAG 790
            ERHLIRTSLQVLALQREG ++V +RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAG
Sbjct: 728  ERHLIRTSLQVLALQREGDSVVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAG 787

Query: 789  VHDSFWTHACDVDEMNEILRKKFVELYNMPILENLLENFQTSHPMLSFPPLPDRGNFDLE 610
            VHDSFWTHACDV++MN+ILR+KFVELY+MP+LENL E+ QTS+P L FPPLP+RGNFDL 
Sbjct: 788  VHDSFWTHACDVEKMNQILREKFVELYSMPVLENLFESVQTSYPSLVFPPLPERGNFDLR 847

Query: 609  EVLKSPYFFN 580
            EVLKSPYFFN
Sbjct: 848  EVLKSPYFFN 857


>ref|XP_011033373.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Populus
            euphratica]
          Length = 982

 Score = 1459 bits (3778), Expect = 0.0
 Identities = 709/944 (75%), Positives = 816/944 (86%), Gaps = 3/944 (0%)
 Frame = -1

Query: 3402 PIRLCPLQDSLHSNFMENIENSGNFHLPSSEKDKIVHQRVEQIETFSDLGIPRSENSINH 3223
            P+   PL DS H   +E+      F +P+       HQ++E +  F              
Sbjct: 62   PLLFHPLHDSSHDRLLED------FEIPTINN----HQKLETLIKFD------------- 98

Query: 3222 QLLCLEPRRRIFVQDPPWISAIFLKGLYKRVKQQ---EDREMEKRKFNLLRRRQVKEETE 3052
            Q++  E  +R+F++D PWISA++ KG +K   ++   E +++EKRK+NLLRRRQ++EETE
Sbjct: 99   QIVHGESSKRVFIRDSPWISALYWKGTHKIANKKVKLELKDIEKRKYNLLRRRQIREETE 158

Query: 3051 AWERMVDEYKELEAEMIEKRLAPNLPHIKGLFLGWFEPLREAIAREQKVQRTKKQKAAYA 2872
            AWERM +EY  L  EM E++LAPNLP++K LFLGWFEPL+EAI REQK++++KKQK+A++
Sbjct: 159  AWERMAEEYTGLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIEREQKLEKSKKQKSAFS 218

Query: 2871 PHIELLPADKMAVIVMHKMMGLVMAGHEDGCVQVVQAAVHIGMAIEQEVRIHSFLEKTKN 2692
            P+IELLPADKMAVIVMHKMMGLVM GHEDGCV+VVQAAV IG+AIEQEVRIH+FLEKTKN
Sbjct: 219  PYIELLPADKMAVIVMHKMMGLVMVGHEDGCVRVVQAAVQIGIAIEQEVRIHNFLEKTKN 278

Query: 2691 YKRKKIVADTEEVLSKEKEMLRKRVNSLIRSKRFMEAQKLLKNEGKKPWGRDTQAKLGSR 2512
            ++RKK + D +E + KEKEMLRKRVNSLIR KR ME Q L+  +  KPW RD QAKLGSR
Sbjct: 279  HQRKKTMHDVQESMDKEKEMLRKRVNSLIRRKRLMEVQNLVIQDETKPWSRDKQAKLGSR 338

Query: 2511 LVELLIESAYVQHPVNQAGDSPLDVLPAFRHRFKIIMKHPGQKITKRYGVVECDPLVLAG 2332
            L+ELL E+AYVQ P +Q+   P DV PAFRH FK + K+PGQK  K+YGV+ECDPL+L G
Sbjct: 339  LIELLTETAYVQPPADQSEGIPPDVRPAFRHIFKSVTKNPGQKTVKKYGVIECDPLILTG 398

Query: 2331 LDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQEALKSVTGDCMKK 2152
            LD +AKHMLIPY PMLVPPKKW+GYDKGG+LFLPSY+MRTHGSR+QQ+A++SV G  M+K
Sbjct: 399  LDGTAKHMLIPYFPMLVPPKKWRGYDKGGHLFLPSYIMRTHGSRQQQDAVRSVPGKQMQK 458

Query: 2151 VLEALDTLGGTKWRVNKKVLSVLEDIWLSGGNIAGLVDRNDVPLPAKPFSEDLTEVQNWK 1972
            V EALDTLG TKWRVN KVL V+E IW SGGN AGLV+R D+P+P KP S+DLTE+Q WK
Sbjct: 459  VFEALDTLGNTKWRVNGKVLDVVERIWASGGNNAGLVNRGDIPIPEKPSSDDLTEIQKWK 518

Query: 1971 WSVRKAKKVNQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSS 1792
            WSVRKAKK+NQERHSQRCDTELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHL HLSS
Sbjct: 519  WSVRKAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSS 578

Query: 1791 DVCRGVLEFAEGRPLGKSGLCWLKIHLANLFSGGVEKLSHDGRLAFVENHLNDIFDSAEN 1612
            D+CRGVLEFAEGRPLGKSGLCWLKIHLANL+SGGVEKLSHDGRLAFVENHL++IFDSAEN
Sbjct: 579  DLCRGVLEFAEGRPLGKSGLCWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAEN 638

Query: 1611 PINGSRWWLTAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRN 1432
            P+NG RWWLTAEDPFQCLAACINLSEALKS+SPHTVISHLPIHQDGSCNGLQHYAALG +
Sbjct: 639  PVNGKRWWLTAEDPFQCLAACINLSEALKSTSPHTVISHLPIHQDGSCNGLQHYAALGGD 698

Query: 1431 TLEAAAVNLVAGEKPADVYSEIAVRVHDIMKRDSNKDPSKHPHALLAKILIDQVDRKLVK 1252
            + EAAAVNLVA EKP+DVYSEIA RVH+I+++DSNKDP+ +PHALLAK+LID+VDRKLVK
Sbjct: 699  SQEAAAVNLVAAEKPSDVYSEIAARVHEIIRKDSNKDPATNPHALLAKVLIDEVDRKLVK 758

Query: 1251 QTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFSSACYAAKVTLTALGEIFEAARSI 1072
            QTVMTSVYGVT+VGAREQIKRRLEEKGHITDDR LFS+ACYAAKVTLTALGE+F+AAR I
Sbjct: 759  QTVMTSVYGVTYVGAREQIKRRLEEKGHITDDRLLFSAACYAAKVTLTALGELFQAARDI 818

Query: 1071 MGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQREGNLVAIRK 892
            MGWLGDCAKVIASE+QPVRWTTPLGLPVVQPY K++RHLIRTSLQVLALQREG+ V +RK
Sbjct: 819  MGWLGDCAKVIASEDQPVRWTTPLGLPVVQPYYKTQRHLIRTSLQVLALQREGSSVQVRK 878

Query: 891  QRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNEILRKKFVEL 712
            QRTAFPPNFVHSLDGSHMMMTAVACRDA L FAGVHDSFWTHA DVD MN ILR+KFVEL
Sbjct: 879  QRTAFPPNFVHSLDGSHMMMTAVACRDADLRFAGVHDSFWTHARDVDLMNRILREKFVEL 938

Query: 711  YNMPILENLLENFQTSHPMLSFPPLPDRGNFDLEEVLKSPYFFN 580
            YNMPILENLLE+FQTS+P L FP LP+RGNFDL+EVL+SPYFFN
Sbjct: 939  YNMPILENLLEDFQTSYPTLKFPSLPERGNFDLQEVLRSPYFFN 982