BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zanthoxylum22_contig00000455
         (1840 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006422121.1| hypothetical protein CICLE_v10004760mg [Citr...   771   0.0  
gb|KDO56129.1| hypothetical protein CISIN_1g010092mg [Citrus sin...   765   0.0  
ref|XP_007038959.1| Sigma factor E isoform 1 [Theobroma cacao] g...   683   0.0  
ref|XP_007219010.1| hypothetical protein PRUPE_ppa004259mg [Prun...   674   0.0  
ref|XP_008376694.1| PREDICTED: RNA polymerase sigma factor sigE,...   672   0.0  
ref|XP_009368680.1| PREDICTED: RNA polymerase sigma factor sigE,...   669   0.0  
ref|XP_009357326.1| PREDICTED: RNA polymerase sigma factor sigE,...   664   0.0  
ref|XP_012090115.1| PREDICTED: RNA polymerase sigma factor sigE,...   662   0.0  
ref|XP_008234778.1| PREDICTED: RNA polymerase sigma factor sigE,...   662   0.0  
ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor sigE,...   661   0.0  
gb|KHG11410.1| RNA polymerase sigma factor rpoD [Gossypium arbor...   660   0.0  
ref|XP_011001910.1| PREDICTED: RNA polymerase sigma factor sigE,...   659   0.0  
ref|XP_012440029.1| PREDICTED: RNA polymerase sigma factor sigE,...   656   0.0  
gb|KJB52622.1| hypothetical protein B456_008G270500 [Gossypium r...   656   0.0  
gb|AKC88737.1| sigma factor [Francoa sonchifolia]                     654   0.0  
ref|XP_011007924.1| PREDICTED: RNA polymerase sigma factor sigE,...   654   0.0  
gb|AKC88745.1| sigma factor [Melianthus villosus]                     653   0.0  
ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [...   652   0.0  
ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,...   652   0.0  
ref|XP_010266467.1| PREDICTED: RNA polymerase sigma factor sigE,...   648   0.0  

>ref|XP_006422121.1| hypothetical protein CICLE_v10004760mg [Citrus clementina]
            gi|567858878|ref|XP_006422122.1| hypothetical protein
            CICLE_v10004760mg [Citrus clementina]
            gi|568874930|ref|XP_006490565.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X1 [Citrus
            sinensis] gi|568874932|ref|XP_006490566.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X2 [Citrus
            sinensis] gi|568874934|ref|XP_006490567.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X3 [Citrus
            sinensis] gi|557523994|gb|ESR35361.1| hypothetical
            protein CICLE_v10004760mg [Citrus clementina]
            gi|557523995|gb|ESR35362.1| hypothetical protein
            CICLE_v10004760mg [Citrus clementina]
            gi|641837169|gb|KDO56125.1| hypothetical protein
            CISIN_1g010092mg [Citrus sinensis]
            gi|641837170|gb|KDO56126.1| hypothetical protein
            CISIN_1g010092mg [Citrus sinensis]
            gi|641837171|gb|KDO56127.1| hypothetical protein
            CISIN_1g010092mg [Citrus sinensis]
            gi|641837172|gb|KDO56128.1| hypothetical protein
            CISIN_1g010092mg [Citrus sinensis]
          Length = 513

 Score =  771 bits (1991), Expect = 0.0
 Identities = 409/514 (79%), Positives = 435/514 (84%), Gaps = 5/514 (0%)
 Frame = -1

Query: 1720 MGIVTISSSAARSPIGLSPSTYRSTSKRPLIVAFKADKFHNPALVAPHEQIPLPIETPKQ 1541
            MG+VTISSS ARSPIGLS  ++RSTSKRPLIVAFKADK +N AL +P EQIPLPIETPK+
Sbjct: 1    MGVVTISSSPARSPIGLSTISHRSTSKRPLIVAFKADKSNNQALFSPQEQIPLPIETPKR 60

Query: 1540 HQXXXXXXXXXXXXXKAVSTDDASPCTLDVDYNEAATKLENIYKLSPAIKISDVEDXXXX 1361
            HQ             K V +D+ASPCTLDVDYNEAA KLENIYKLSPA+  S+V+     
Sbjct: 61   HQKRRENSRKRLERVKGVFSDEASPCTLDVDYNEAAAKLENIYKLSPAVTTSEVKYADGV 120

Query: 1360 XXXXRT-----SEGEEKADDGYSRHVVRNSVKKPKRLSLDKRIELRKNKDEEVVTKLKIK 1196
                R       E E+K+DD   + VVRN VK+PKRLSLDKRIELRKN+DE+VVTK + K
Sbjct: 121  VKRGRQRRKRIGEVEKKSDDVSGKPVVRNQVKRPKRLSLDKRIELRKNEDEKVVTKTR-K 179

Query: 1195 KDSKDEHDKIEKLLREYSSSTDLGSLDWKKMKIPPVLSSAEHTWLFKLMQPMKAFLQVKE 1016
             DSKDEH+KIEKL+REYS STDL SLDWKKMKIPPVLSS EHTWLFKLMQPMK F+QVKE
Sbjct: 180  TDSKDEHEKIEKLVREYSYSTDLVSLDWKKMKIPPVLSSTEHTWLFKLMQPMKVFVQVKE 239

Query: 1015 QLQKDLEREPTDGELAEATNMSAAQLKKCLEVGRAARNKLIKHNLRLVLFVINKYFQDFA 836
            QLQKDL REPTD ELAEATNMSAAQ+KKCLEVGRAARNKLIKHNLRLVLFVI KYFQDFA
Sbjct: 240  QLQKDLGREPTDVELAEATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFA 299

Query: 835  NGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLE 656
            NGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLE
Sbjct: 300  NGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLE 359

Query: 655  SVRAEIHRAKLELLFEHQRLPTDEEIIQRVGISPERYREVMRASRPILSLHSRHVVTQEE 476
            SVR EI RAKLELLFE +R+PTDEEIIQ V ISPERYREVM+AS+PILSLHSRH VTQEE
Sbjct: 360  SVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEE 419

Query: 475  FINGITDVDGVENENQRQXXXXXXXXXXXXXXLKPKESLVIRQRFGLDGKGDRTLGEIAG 296
            FINGITDVDGVENENQRQ              LKPKESLVIRQRFGLDGKGDRTLGEIAG
Sbjct: 420  FINGITDVDGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAG 479

Query: 295  NLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 194
            NLNISREMVRKHEVK LMKLKHPTRVDYL QHMV
Sbjct: 480  NLNISREMVRKHEVKGLMKLKHPTRVDYLRQHMV 513


>gb|KDO56129.1| hypothetical protein CISIN_1g010092mg [Citrus sinensis]
          Length = 518

 Score =  765 bits (1975), Expect = 0.0
 Identities = 409/519 (78%), Positives = 435/519 (83%), Gaps = 10/519 (1%)
 Frame = -1

Query: 1720 MGIVTISSSAARSPIGLSPSTYRSTSKRPLIVAFKADKFHNPALVAPHEQIPLPIETPKQ 1541
            MG+VTISSS ARSPIGLS  ++RSTSKRPLIVAFKADK +N AL +P EQIPLPIETPK+
Sbjct: 1    MGVVTISSSPARSPIGLSTISHRSTSKRPLIVAFKADKSNNQALFSPQEQIPLPIETPKR 60

Query: 1540 HQXXXXXXXXXXXXXKAVSTDDASPCTLDVDYNEAATKLENIYKLSPAIKISDVEDXXXX 1361
            HQ             K V +D+ASPCTLDVDYNEAA KLENIYKLSPA+  S+V+     
Sbjct: 61   HQKRRENSRKRLERVKGVFSDEASPCTLDVDYNEAAAKLENIYKLSPAVTTSEVKYADGV 120

Query: 1360 XXXXRT-----SEGEEKADDGYSRHVVRNSVKKPKRLSLDKRIELRKNKDEEVVTKLKIK 1196
                R       E E+K+DD   + VVRN VK+PKRLSLDKRIELRKN+DE+VVTK + K
Sbjct: 121  VKRGRQRRKRIGEVEKKSDDVSGKPVVRNQVKRPKRLSLDKRIELRKNEDEKVVTKTR-K 179

Query: 1195 KDSKDEHDKIEKLLREYSSSTDLGSLDWKKMKIPPVLSSAEHTWLFKLMQPMKAFLQVKE 1016
             DSKDEH+KIEKL+REYS STDL SLDWKKMKIPPVLSS EHTWLFKLMQPMK F+QVKE
Sbjct: 180  TDSKDEHEKIEKLVREYSYSTDLVSLDWKKMKIPPVLSSTEHTWLFKLMQPMKVFVQVKE 239

Query: 1015 QLQKDLEREPTDGELAEATNMSAAQLKKCLEVGRAARNKLIKHNLRLVLFVINKYFQDFA 836
            QLQKDL REPTD ELAEATNMSAAQ+KKCLEVGRAARNKLIKHNLRLVLFVI KYFQDFA
Sbjct: 240  QLQKDLGREPTDVELAEATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFA 299

Query: 835  NGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLE 656
            NGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLE
Sbjct: 300  NGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLE 359

Query: 655  S-----VRAEIHRAKLELLFEHQRLPTDEEIIQRVGISPERYREVMRASRPILSLHSRHV 491
            S     VR EI RAKLELLFE +R+PTDEEIIQ V ISPERYREVM+AS+PILSLHSRH 
Sbjct: 360  STSIMQVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHG 419

Query: 490  VTQEEFINGITDVDGVENENQRQXXXXXXXXXXXXXXLKPKESLVIRQRFGLDGKGDRTL 311
            VTQEEFINGITDVDGVENENQRQ              LKPKESLVIRQRFGLDGKGDRTL
Sbjct: 420  VTQEEFINGITDVDGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTL 479

Query: 310  GEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 194
            GEIAGNLNISREMVRKHEVK LMKLKHPTRVDYL QHMV
Sbjct: 480  GEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYLRQHMV 518


>ref|XP_007038959.1| Sigma factor E isoform 1 [Theobroma cacao]
            gi|590673674|ref|XP_007038960.1| Sigma factor E isoform 1
            [Theobroma cacao] gi|508776204|gb|EOY23460.1| Sigma
            factor E isoform 1 [Theobroma cacao]
            gi|508776205|gb|EOY23461.1| Sigma factor E isoform 1
            [Theobroma cacao]
          Length = 516

 Score =  683 bits (1763), Expect = 0.0
 Identities = 360/516 (69%), Positives = 411/516 (79%), Gaps = 7/516 (1%)
 Frame = -1

Query: 1720 MGIVTISSSAARSPIGLSP--STYRSTSKRPLIVAFKADKFHNPALVAPHEQIPLPIETP 1547
            MG+V++SSSAAR+P+GLS   ST R TS+RPL VAFKADK  N ALV P E I LPIET 
Sbjct: 1    MGVVSVSSSAARTPLGLSTKFSTQRCTSRRPLTVAFKADKSDNTALVTPQEHILLPIETA 60

Query: 1546 KQHQXXXXXXXXXXXXXKAVSTDDASPCTLDVDYNEAATKLENIYKLSPAIKISDVEDXX 1367
            K+H                V TDD SPCTL+VDYNEAA KLENIYKLSPA + SDVE+  
Sbjct: 61   KEHPKRRGKAKKDPKIVNHVFTDDGSPCTLEVDYNEAAAKLENIYKLSPATRSSDVEEVE 120

Query: 1366 XXXXXXR-----TSEGEEKADDGYSRHVVRNSVKKPKRLSLDKRIELRKNKDEEVVTKLK 1202
                  R     + E +EK  +   + VVRN   + KRLSLD RI L+KN++E+ V  ++
Sbjct: 121  GKIKGRRQRRKRSKESDEKGVNSNDQIVVRNQTNRIKRLSLDNRIALKKNREEKPVVSVR 180

Query: 1201 IKKDSKDEHDKIEKLLREYSSSTDLGSLDWKKMKIPPVLSSAEHTWLFKLMQPMKAFLQV 1022
             KK S++E +KI++L+R+YS+STDL SLDW+KMKIPPVL S EHTWLFKLMQPMKA LQ 
Sbjct: 181  RKKSSENESEKIDRLVRDYSASTDLVSLDWRKMKIPPVLPSIEHTWLFKLMQPMKALLQA 240

Query: 1021 KEQLQKDLEREPTDGELAEATNMSAAQLKKCLEVGRAARNKLIKHNLRLVLFVINKYFQD 842
            KE LQKDL R+PT+ ELAEATNMSAAQ++K LEVG+AARNKLIKHNLRLVLF INKYFQD
Sbjct: 241  KENLQKDLGRDPTEDELAEATNMSAAQVRKHLEVGQAARNKLIKHNLRLVLFSINKYFQD 300

Query: 841  FANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFG 662
            FANGPRFQDLCQAGVKGLITAIDRFEP+RRFRLSTY LFWIRHAIIRSMT+SSFTRV FG
Sbjct: 301  FANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYSLFWIRHAIIRSMTLSSFTRVSFG 360

Query: 661  LESVRAEIHRAKLELLFEHQRLPTDEEIIQRVGISPERYREVMRASRPILSLHSRHVVTQ 482
            LESVR EI RAKLELLFE  R PT+EEII++VGISPERY+EVMRAS+P+ SLHSRH VTQ
Sbjct: 361  LESVRVEIQRAKLELLFELHREPTEEEIIKKVGISPERYQEVMRASKPVASLHSRHSVTQ 420

Query: 481  EEFINGITDVDGVENENQRQXXXXXXXXXXXXXXLKPKESLVIRQRFGLDGKGDRTLGEI 302
            EEFINGITD+DGV  +++RQ              LKPKESLVIRQR+GLDGKGDRTLGEI
Sbjct: 421  EEFINGITDIDGVGGDHRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEI 480

Query: 301  AGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 194
            AGNLNISREMVRKHEVKALMKLKHP RVDYL +++V
Sbjct: 481  AGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVV 516


>ref|XP_007219010.1| hypothetical protein PRUPE_ppa004259mg [Prunus persica]
            gi|462415472|gb|EMJ20209.1| hypothetical protein
            PRUPE_ppa004259mg [Prunus persica]
          Length = 519

 Score =  674 bits (1740), Expect = 0.0
 Identities = 358/519 (68%), Positives = 420/519 (80%), Gaps = 10/519 (1%)
 Frame = -1

Query: 1720 MGIVTISSSAARSPIGLSP--STYRSTSKRPLIVAFKADKFHNPALVAPHEQIPLPIETP 1547
            MG+VT+SSSA+R+P+GLS   +  RST ++PLIVAFK D+ +  ALVAP E+IPLPIET 
Sbjct: 1    MGVVTVSSSASRTPLGLSTKLTIQRSTLRKPLIVAFKTDEANKTALVAPQEKIPLPIETR 60

Query: 1546 KQHQXXXXXXXXXXXXXKAVSTDDASPCTLDVDYNEAATKLENIYKLSPAIKI-SDVEDX 1370
            K+HQ             K+ +TD ASPCTL+VDYNEAA KLEN+YK SP  +  SDVED 
Sbjct: 61   KKHQKRLGKARKLAKSVKSATTDVASPCTLEVDYNEAAAKLENLYKRSPETEANSDVEDV 120

Query: 1369 XXXXXXXR-----TSEGE-EKADDGYSRHVVRNSVKKPKRLSLDKRIELRKNKDEEVVTK 1208
                   R     TSE + +K ++  S  VVRN  KK KRLSL+KR+ L+ NKDE+V++ 
Sbjct: 121  DGLMRRGRKRRKKTSESDADKDENRTSNTVVRNRTKKAKRLSLNKRVALKWNKDEKVISS 180

Query: 1207 LKIKKDS-KDEHDKIEKLLREYSSSTDLGSLDWKKMKIPPVLSSAEHTWLFKLMQPMKAF 1031
            +  K+ S K+E++KIE+L+REYS+STDL SLDWKKMKIPPVL+S+EH WLFKLMQPMK  
Sbjct: 181  IVRKRKSRKNENEKIEELVREYSTSTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGL 240

Query: 1030 LQVKEQLQKDLEREPTDGELAEATNMSAAQLKKCLEVGRAARNKLIKHNLRLVLFVINKY 851
            L+VKE LQKDL REPT+GELAEATNMS  Q+KK LEVGRAAR+KLIKHNLRLVLFV+NKY
Sbjct: 241  LEVKENLQKDLGREPTNGELAEATNMSVVQVKKHLEVGRAARSKLIKHNLRLVLFVMNKY 300

Query: 850  FQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRV 671
            FQDFANGP+FQDLCQAGVKGLITAIDRFEPKR FRLSTYGLFWIRHAIIRSMT+SSFTRV
Sbjct: 301  FQDFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTRV 360

Query: 670  PFGLESVRAEIHRAKLELLFEHQRLPTDEEIIQRVGISPERYREVMRASRPILSLHSRHV 491
             FGLESVRAEI +AKL +LF  +R+PT++EII++VGISPERY EVMRAS+P+ SLHSRH 
Sbjct: 361  SFGLESVRAEIQKAKLGMLFALKRMPTEDEIIEKVGISPERYHEVMRASKPVFSLHSRHT 420

Query: 490  VTQEEFINGITDVDGVENENQRQXXXXXXXXXXXXXXLKPKESLVIRQRFGLDGKGDRTL 311
             TQEEFINGITDVDGVE +N+++              LKPKESLVIRQR+GLDGKGDRTL
Sbjct: 421  TTQEEFINGITDVDGVEGDNRQKPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTL 480

Query: 310  GEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 194
            GEIAGNLNISREMVRKHEVKALMKLKHP RVDYL +++V
Sbjct: 481  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVV 519


>ref|XP_008376694.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Malus domestica]
          Length = 519

 Score =  672 bits (1733), Expect = 0.0
 Identities = 357/519 (68%), Positives = 416/519 (80%), Gaps = 10/519 (1%)
 Frame = -1

Query: 1720 MGIVTISSSAARSPIGLSP--STYRSTSKRPLIVAFKADKFHNPALVAPHEQIPLPIETP 1547
            MG+VT+S+SAAR+P+GLS   ++ RST ++PLIVAFK D+ +  ALVAP  +IPLPIET 
Sbjct: 1    MGVVTVSTSAARTPLGLSAKSTSQRSTFRKPLIVAFKTDESNKTALVAPQGKIPLPIETR 60

Query: 1546 KQHQXXXXXXXXXXXXXKAVSTDDASPCT-LDVDYNEAATKLENIYKLSPAIKIS-DVED 1373
            K+HQ             K+ +TD A+PCT L+VDYNEAA KLEN+YK SP I+   DVED
Sbjct: 61   KKHQKRIGKARKLAKSVKSTATDVAAPCTTLEVDYNEAAAKLENLYKRSPEIEADVDVED 120

Query: 1372 XXXXXXXXR-----TSEGE-EKADDGYSRHVVRNSVKKPKRLSLDKRIELRKNKDEEVVT 1211
                    R     TSE   EK +   S  VVR+  KK KRL+LDKR+ L+ NKDE+VV+
Sbjct: 121  ADGLMRRGRKRRKKTSESNHEKEEKRTSDIVVRSKTKKAKRLNLDKRVSLKWNKDEKVVS 180

Query: 1210 KLKIKKDSKDEHDKIEKLLREYSSSTDLGSLDWKKMKIPPVLSSAEHTWLFKLMQPMKAF 1031
             ++ +KD K+E +KIE+L+REYS+STDL SLDWKKMKIPPVL+S+EH WLFKLMQPMK  
Sbjct: 181  SVQKRKDQKNEMEKIEELVREYSASTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGL 240

Query: 1030 LQVKEQLQKDLEREPTDGELAEATNMSAAQLKKCLEVGRAARNKLIKHNLRLVLFVINKY 851
             + +EQLQKDL  EPT+GELAEATNMS  Q+KK  EVGRAARNKLIKHNLRLVLFVINKY
Sbjct: 241  HEAREQLQKDLGTEPTNGELAEATNMSVVQVKKHFEVGRAARNKLIKHNLRLVLFVINKY 300

Query: 850  FQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRV 671
            FQDFANGP+FQDLCQAGV+GLITAIDRFEPKR FRLSTYGLFWIRHAIIRSMTVSSFTRV
Sbjct: 301  FQDFANGPKFQDLCQAGVRGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTVSSFTRV 360

Query: 670  PFGLESVRAEIHRAKLELLFEHQRLPTDEEIIQRVGISPERYREVMRASRPILSLHSRHV 491
             FGLESVRAEI +AKLE++F  +R+PTDEEII++VGISPERY EVMRAS+P+ SLHSRH 
Sbjct: 361  SFGLESVRAEIQKAKLEMIFSLKRIPTDEEIIEKVGISPERYHEVMRASKPVSSLHSRHA 420

Query: 490  VTQEEFINGITDVDGVENENQRQXXXXXXXXXXXXXXLKPKESLVIRQRFGLDGKGDRTL 311
             TQEE+INGITDVDGVE +N+R+              LKPKESLVIRQR+GLDGKGDRTL
Sbjct: 421  TTQEEYINGITDVDGVEGDNRRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTL 480

Query: 310  GEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 194
            GEIAGNLNISREMVRKHEVKALMKLKHP RVDYL +++V
Sbjct: 481  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 519


>ref|XP_009368680.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Pyrus x bretschneideri]
          Length = 519

 Score =  669 bits (1726), Expect = 0.0
 Identities = 356/519 (68%), Positives = 416/519 (80%), Gaps = 10/519 (1%)
 Frame = -1

Query: 1720 MGIVTISSSAARSPIGLSP--STYRSTSKRPLIVAFKADKFHNPALVAPHEQIPLPIETP 1547
            MG+VT+S+SAAR+P+GLS   ++ RS  ++P IVAFK D+ +  ALVAP  +IPLPIET 
Sbjct: 1    MGVVTVSTSAARTPLGLSTKSTSQRSPFRKPWIVAFKTDESNKTALVAPQGKIPLPIETR 60

Query: 1546 KQHQXXXXXXXXXXXXXKAVSTDDASPCT-LDVDYNEAATKLENIYKLSPAIKIS-DVED 1373
            K+HQ             K+ +TD A+PCT L+VDYNEAA KLEN+YK SP I+   DVED
Sbjct: 61   KKHQKRIGKARKLAKSVKSTATDVAAPCTTLEVDYNEAAAKLENLYKRSPEIEADVDVED 120

Query: 1372 XXXXXXXXR-----TSEGE-EKADDGYSRHVVRNSVKKPKRLSLDKRIELRKNKDEEVVT 1211
                    R     TSE + EK +   S  VVR+  KK KRL+LDKR+ L+ NKDE+VV+
Sbjct: 121  ADGLLRRGRKRRKKTSESDHEKEEKRTSDIVVRSKTKKAKRLNLDKRVALKWNKDEKVVS 180

Query: 1210 KLKIKKDSKDEHDKIEKLLREYSSSTDLGSLDWKKMKIPPVLSSAEHTWLFKLMQPMKAF 1031
             ++ +KD K+E +KIE+L+REYS+STDL SLDWKKMKIPPVL+S+EH WLFKLMQPMK  
Sbjct: 181  SVQKRKDQKNETEKIEELVREYSASTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGL 240

Query: 1030 LQVKEQLQKDLEREPTDGELAEATNMSAAQLKKCLEVGRAARNKLIKHNLRLVLFVINKY 851
             +V+EQLQKDL  EPT+GELAEATNMS  Q+KK  EVGRAARNKLIKHNLRLVLFVINKY
Sbjct: 241  HEVREQLQKDLGTEPTNGELAEATNMSVVQVKKHFEVGRAARNKLIKHNLRLVLFVINKY 300

Query: 850  FQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRV 671
            FQDFANGP+FQDLCQAGV+GLITAIDRFEPKR FRLSTYGLFWIRHAIIRSMTVSSFTRV
Sbjct: 301  FQDFANGPKFQDLCQAGVRGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTVSSFTRV 360

Query: 670  PFGLESVRAEIHRAKLELLFEHQRLPTDEEIIQRVGISPERYREVMRASRPILSLHSRHV 491
             FGLESVRAEI +AKLE++F  +R+PTDEEII++VGISPERY EVMRAS+P+ SLHSRH 
Sbjct: 361  SFGLESVRAEIQKAKLEMMFSLKRMPTDEEIIEKVGISPERYHEVMRASKPVSSLHSRHA 420

Query: 490  VTQEEFINGITDVDGVENENQRQXXXXXXXXXXXXXXLKPKESLVIRQRFGLDGKGDRTL 311
             TQEE+INGITDVDGVE +N+R+              LKPKESLVIRQR+GLDGKGDRTL
Sbjct: 421  TTQEEYINGITDVDGVEGDNRRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTL 480

Query: 310  GEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 194
            GEIAGNLNISREMVRKHEVKALMKLKHP RVDYL +++V
Sbjct: 481  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 519


>ref|XP_009357326.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Pyrus x bretschneideri]
          Length = 519

 Score =  664 bits (1714), Expect = 0.0
 Identities = 355/519 (68%), Positives = 414/519 (79%), Gaps = 10/519 (1%)
 Frame = -1

Query: 1720 MGIVTISSSAARSPIGLSP--STYRSTSKRPLIVAFKADKFHNPALVAPHEQIPLPIETP 1547
            MG+VT+S+SAAR+P+GLS   ++ RS  ++P IVAFK D+ +  ALVAP   IPLPIET 
Sbjct: 1    MGVVTVSTSAARTPLGLSTKSTSQRSPFRKPWIVAFKTDESNKTALVAPQGNIPLPIETR 60

Query: 1546 KQHQXXXXXXXXXXXXXKAVSTDDASPCT-LDVDYNEAATKLENIYKLSPAIKIS-DVED 1373
            K+ Q             K+ +TD A+PCT L+VDYNEAA KLEN+YK SP I+   DVED
Sbjct: 61   KKLQKRIGKARKLAKSVKSTATDVAAPCTTLEVDYNEAAAKLENLYKRSPEIEADVDVED 120

Query: 1372 XXXXXXXXR-----TSEGE-EKADDGYSRHVVRNSVKKPKRLSLDKRIELRKNKDEEVVT 1211
                    R     TSE + EK +   S  VVR+  KK KRL+LDKR+ L+ NKDE+VV+
Sbjct: 121  ADGLLRRGRKRRKKTSESDHEKEEKRTSDIVVRSKTKKAKRLNLDKRVALKWNKDEKVVS 180

Query: 1210 KLKIKKDSKDEHDKIEKLLREYSSSTDLGSLDWKKMKIPPVLSSAEHTWLFKLMQPMKAF 1031
             ++ +KD K+E +KIE+L+REYS+STDL SLDWKKMKIPPVL+S+EH WLFKLMQPMK  
Sbjct: 181  SVQKRKDQKNETEKIEELVREYSASTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGL 240

Query: 1030 LQVKEQLQKDLEREPTDGELAEATNMSAAQLKKCLEVGRAARNKLIKHNLRLVLFVINKY 851
             +V+EQLQKDL  EPT+GELAEATNMS  Q+KK  EVGRAARNKLIKHNLRLVLFVINKY
Sbjct: 241  HEVREQLQKDLGTEPTNGELAEATNMSVVQVKKHFEVGRAARNKLIKHNLRLVLFVINKY 300

Query: 850  FQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRV 671
            FQDFANGP+FQDLCQAGV+GLITAIDRFEPKR FRLSTYGLFWIRHAIIRSMTVSSFTRV
Sbjct: 301  FQDFANGPKFQDLCQAGVRGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTVSSFTRV 360

Query: 670  PFGLESVRAEIHRAKLELLFEHQRLPTDEEIIQRVGISPERYREVMRASRPILSLHSRHV 491
             FGLESVRAEI +AKLE++F  +R+PTDEEII++VGISPERY EVMRAS+P+ SLHSRH 
Sbjct: 361  SFGLESVRAEIQKAKLEMIFSLKRMPTDEEIIEKVGISPERYHEVMRASKPVSSLHSRHA 420

Query: 490  VTQEEFINGITDVDGVENENQRQXXXXXXXXXXXXXXLKPKESLVIRQRFGLDGKGDRTL 311
             TQEE+INGITDVDGVE +N+R+              LKPKESLVIRQR+GLDGKGDRTL
Sbjct: 421  TTQEEYINGITDVDGVEGDNRRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTL 480

Query: 310  GEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 194
            GEIAGNLNISREMVRKHEVKALMKLKHP RVDYL +++V
Sbjct: 481  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 519


>ref|XP_012090115.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Jatropha curcas]
            gi|643706039|gb|KDP22171.1| hypothetical protein
            JCGZ_26002 [Jatropha curcas]
          Length = 502

 Score =  662 bits (1709), Expect = 0.0
 Identities = 355/516 (68%), Positives = 405/516 (78%), Gaps = 7/516 (1%)
 Frame = -1

Query: 1720 MGIVTISSSAARSPIGLSP--STYRSTSKRPLIVAFKADKFHNPALVAPHEQIPLPIETP 1547
            MG+VT SSSAAR+P+GL+   STYRST KRPLIVAFK DK +N ALVAP E+IPLPIETP
Sbjct: 1    MGVVTASSSAARTPLGLNTKFSTYRSTVKRPLIVAFKDDKSNNTALVAPSERIPLPIETP 60

Query: 1546 KQHQXXXXXXXXXXXXXKAVSTDDASPCTLDVDYNEAATKLENIYKLSPAIKISDVE--- 1376
            K  +                + ++   C L+VDYNEAA KLENI+KLSP    +DV+   
Sbjct: 61   KGKKRRGK------------TNNEVLSCALEVDYNEAAAKLENIFKLSPTTDTADVDVSD 108

Query: 1375 -DXXXXXXXXRTSEGEEKADDGYSRHVVRNSVKKPKRLSLDKRIELRKNKDEEVVTK-LK 1202
                      +T E + KA  G ++ +VRN  KK KRL LD RI LRKN +EE +T  ++
Sbjct: 109  LSKKGKQKKRKTREDDGKAGKGANKPIVRNRAKKTKRLDLDTRIALRKNNEEEKITSTIR 168

Query: 1201 IKKDSKDEHDKIEKLLREYSSSTDLGSLDWKKMKIPPVLSSAEHTWLFKLMQPMKAFLQV 1022
             KKD++ E++KIE+L+REYS+STDL SLDWKKMKIPPVL S EH WLFKLMQPMKA LQV
Sbjct: 169  KKKDTRHENEKIEELVREYSASTDLVSLDWKKMKIPPVLHSTEHAWLFKLMQPMKALLQV 228

Query: 1021 KEQLQKDLEREPTDGELAEATNMSAAQLKKCLEVGRAARNKLIKHNLRLVLFVINKYFQD 842
            K+ LQ +L REPT+GELAEATNM   Q++K LE GRAARNKLIKHNLRLVLFVINKYFQD
Sbjct: 229  KDHLQTNLGREPTEGELAEATNMKVEQVRKQLEAGRAARNKLIKHNLRLVLFVINKYFQD 288

Query: 841  FANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFG 662
            FANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTY LFWIRHAIIRSMT+SSFTRV FG
Sbjct: 289  FANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYSLFWIRHAIIRSMTLSSFTRVSFG 348

Query: 661  LESVRAEIHRAKLELLFEHQRLPTDEEIIQRVGISPERYREVMRASRPILSLHSRHVVTQ 482
            LESVRAEI +A+LELL E QR PT+ EII+RVGISPERY EVMRAS+PI SLHSRHVVTQ
Sbjct: 349  LESVRAEIQKARLELLIELQRQPTEVEIIERVGISPERYHEVMRASKPIYSLHSRHVVTQ 408

Query: 481  EEFINGITDVDGVENENQRQXXXXXXXXXXXXXXLKPKESLVIRQRFGLDGKGDRTLGEI 302
            EEFINGITD DG   +N+RQ              LKPKES+VIRQR+GLDGKGDRTLGEI
Sbjct: 409  EEFINGITDTDG--GDNRRQPALLRLALDDVLDSLKPKESVVIRQRYGLDGKGDRTLGEI 466

Query: 301  AGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 194
            AGNLNISREMVRK+EVKAL+KLKHP RVDYL +++V
Sbjct: 467  AGNLNISREMVRKYEVKALLKLKHPARVDYLRRYVV 502


>ref|XP_008234778.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Prunus mume]
          Length = 507

 Score =  662 bits (1708), Expect = 0.0
 Identities = 355/519 (68%), Positives = 415/519 (79%), Gaps = 10/519 (1%)
 Frame = -1

Query: 1720 MGIVTISSSAARSPIGLSP--STYRSTSKRPLIVAFKADKFHNPALVAPHEQIPLPIETP 1547
            MG+VT+SSSA+R+P+GLS   ++ RST ++PLIVAFK D+ +  ALVAP E+IPLPIE  
Sbjct: 1    MGVVTVSSSASRTPLGLSTKLTSQRSTLRKPLIVAFKTDEANKTALVAPQEKIPLPIEXX 60

Query: 1546 KQHQXXXXXXXXXXXXXKAVSTDDASPCTLDVDYNEAATKLENIYKLSPAIKI-SDVEDX 1370
                              + +TD ASPCTL+VDYNEAA KLEN+YK SP  +  SDVED 
Sbjct: 61   XXXXXK------------SATTDVASPCTLEVDYNEAAAKLENLYKRSPETEANSDVEDV 108

Query: 1369 XXXXXXXR-----TSEGE-EKADDGYSRHVVRNSVKKPKRLSLDKRIELRKNKDEEVVTK 1208
                   R     TSE + +K ++  S  VVRN  KK KRLSLDKR+ L+ NKDE+V+  
Sbjct: 109  DGLMRRGRKRRKKTSESDADKEENRTSNTVVRNRTKKAKRLSLDKRVTLKWNKDEKVIAS 168

Query: 1207 LKIKKDS-KDEHDKIEKLLREYSSSTDLGSLDWKKMKIPPVLSSAEHTWLFKLMQPMKAF 1031
            +  K+ S K+E++KIE+L+REYS+STDL SLDWKKMKIPPVL+S+EH WLFKLMQPMK  
Sbjct: 169  IVRKRKSRKNENEKIEELVREYSASTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGL 228

Query: 1030 LQVKEQLQKDLEREPTDGELAEATNMSAAQLKKCLEVGRAARNKLIKHNLRLVLFVINKY 851
            L+VKE LQKDL REPT+GELAEATNMS  Q+KK LEVGRAAR+KLIKHNLRLVLFV+NKY
Sbjct: 229  LEVKENLQKDLGREPTNGELAEATNMSVVQVKKHLEVGRAARSKLIKHNLRLVLFVMNKY 288

Query: 850  FQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRV 671
            FQDFANGP+FQDLCQAGVKGLITAIDRFEPKR FRLSTYGLFWIRHAIIRSMT+SSFTRV
Sbjct: 289  FQDFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTRV 348

Query: 670  PFGLESVRAEIHRAKLELLFEHQRLPTDEEIIQRVGISPERYREVMRASRPILSLHSRHV 491
             FGLESVRAEI +AKL +LF  +R+PT++EII++VGISPERY EVMRAS+P+ SLHSRH 
Sbjct: 349  SFGLESVRAEIQKAKLGMLFALKRMPTEDEIIEKVGISPERYHEVMRASKPVFSLHSRHT 408

Query: 490  VTQEEFINGITDVDGVENENQRQXXXXXXXXXXXXXXLKPKESLVIRQRFGLDGKGDRTL 311
             TQEEFINGITDVDGVE +N+++              LKPKESLVIRQR+GLDGKGDRTL
Sbjct: 409  TTQEEFINGITDVDGVEGDNRQKPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTL 468

Query: 310  GEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 194
            GEIAGNLNISREMVRKHEVKALMKLKHP RVDYL +++V
Sbjct: 469  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVV 507


>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Vitis vinifera]
            gi|302143685|emb|CBI22546.3| unnamed protein product
            [Vitis vinifera]
          Length = 518

 Score =  661 bits (1705), Expect = 0.0
 Identities = 347/517 (67%), Positives = 408/517 (78%), Gaps = 9/517 (1%)
 Frame = -1

Query: 1720 MGIVTISSSAA--RSPIGLSP--STYRSTSKRPLIVAFKADKFHNPALVAPHEQIPLPIE 1553
            MG+VT+SSSA+  R+P GL+   S +++  +RPL++AFKADK  N ALV PHE IPLPIE
Sbjct: 1    MGVVTVSSSASASRTPFGLNAKFSNHQTPLRRPLVLAFKADKAKNIALVTPHEPIPLPIE 60

Query: 1552 TPKQHQXXXXXXXXXXXXXKAVSTDDASPCTLDVDYNEAATKLENIYKLSPAIKISDVED 1373
            T K H+             KAVSTD+ SPC++++DYNEAA KLENIYKLSPA  +S+ ED
Sbjct: 61   TSKDHKKRLRRASKPSKRVKAVSTDEVSPCSVELDYNEAAAKLENIYKLSPATDVSEAED 120

Query: 1372 XXXXXXXXRTSE-----GEEKADDGYSRHVVRNSVKKPKRLSLDKRIELRKNKDEEVVTK 1208
                    R         ++KA+   S +VVR   KKPKRLSL+KRI L K K E+ V  
Sbjct: 121  LERVVRRGRQRRKRVTLADDKAEKEVSDNVVRIHNKKPKRLSLEKRIALSKMKQEKAVAS 180

Query: 1207 LKIKKDSKDEHDKIEKLLREYSSSTDLGSLDWKKMKIPPVLSSAEHTWLFKLMQPMKAFL 1028
            ++ K+DSK+E + I+ L+REYS+STDL SLDWKKMKIPPVL  +EH WLFKLMQPMK  L
Sbjct: 181  IQKKRDSKNEDENIDVLVREYSASTDLVSLDWKKMKIPPVLPPSEHAWLFKLMQPMKGLL 240

Query: 1027 QVKEQLQKDLEREPTDGELAEATNMSAAQLKKCLEVGRAARNKLIKHNLRLVLFVINKYF 848
            +VK+ LQKDL REPTDGELAEA +MSA Q+++ +EVG+AARNKLIKHNLRLVLFVINKYF
Sbjct: 241  EVKDNLQKDLGREPTDGELAEAMSMSAVQVRRHMEVGQAARNKLIKHNLRLVLFVINKYF 300

Query: 847  QDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVP 668
            Q+FANGP+FQDLCQAGVKGLITAIDRFEPKR FRLSTYGLFWIRHAI+RSMT+SSFTRV 
Sbjct: 301  QEFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIMRSMTLSSFTRVS 360

Query: 667  FGLESVRAEIHRAKLELLFEHQRLPTDEEIIQRVGISPERYREVMRASRPILSLHSRHVV 488
            FGLESVR EI RAKLELLF+ QRLPT+EEII++VGISPERY EVMRAS+ +LSLH+RH  
Sbjct: 361  FGLESVRVEIQRAKLELLFKLQRLPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHAT 420

Query: 487  TQEEFINGITDVDGVENENQRQXXXXXXXXXXXXXXLKPKESLVIRQRFGLDGKGDRTLG 308
            TQEE+INGITDV+GV  +  RQ              LKPKESLV+RQR+GLDGKGDRTLG
Sbjct: 421  TQEEYINGITDVEGVGGDRGRQLALLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRTLG 480

Query: 307  EIAGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHM 197
            EIAGNL+ISREMVRKHEVKALMKLKHP RVDYL Q++
Sbjct: 481  EIAGNLSISREMVRKHEVKALMKLKHPARVDYLRQYI 517


>gb|KHG11410.1| RNA polymerase sigma factor rpoD [Gossypium arboreum]
          Length = 516

 Score =  660 bits (1702), Expect = 0.0
 Identities = 349/516 (67%), Positives = 406/516 (78%), Gaps = 7/516 (1%)
 Frame = -1

Query: 1720 MGIVTISSSAARSPIGLSP--STYRSTSKRPLIVAFKADKFHNPALVAPHEQIPLPIETP 1547
            MG+V++SSSAAR+P+GL    ST R T +RP I+AFKADK +N ALV   +   LP+ET 
Sbjct: 1    MGVVSVSSSAARTPVGLGTKFSTQRCTFRRPCIMAFKADKSNNTALVTLRDHNLLPVETA 60

Query: 1546 KQHQXXXXXXXXXXXXXKAVSTDDASPCTLDVDYNEAATKLENIYKLSPAI-----KISD 1382
            K+H                  TD+ SP T+DVDYNEAA KLENIYKLSP+      K S+
Sbjct: 61   KEHPKRRGKAKKASKTVNRDFTDEGSPYTVDVDYNEAAAKLENIYKLSPSTQTFDEKGSE 120

Query: 1381 VEDXXXXXXXXRTSEGEEKADDGYSRHVVRNSVKKPKRLSLDKRIELRKNKDEEVVTKLK 1202
             E         R++E + KAD+G  + VVR+  KK +RL LDKRIEL+KN++E+ V   +
Sbjct: 121  GETKGRHLRRKRSTESDGKADNGDDKIVVRSQTKKNRRLGLDKRIELKKNREEKSVVSGQ 180

Query: 1201 IKKDSKDEHDKIEKLLREYSSSTDLGSLDWKKMKIPPVLSSAEHTWLFKLMQPMKAFLQV 1022
             KK   +E +KI++L+R+YS+STDL SLDWKKMKIPPVL S EHTWLFKLMQPMKA L+ 
Sbjct: 181  SKKGISNESEKIDRLVRDYSASTDLVSLDWKKMKIPPVLPSTEHTWLFKLMQPMKALLEA 240

Query: 1021 KEQLQKDLEREPTDGELAEATNMSAAQLKKCLEVGRAARNKLIKHNLRLVLFVINKYFQD 842
            KE LQKDL R+PT+ ELAEATN SAAQ+++ LEVGRAARNKLIKHNLRLVLFVINKYFQD
Sbjct: 241  KENLQKDLGRDPTEDELAEATNSSAAQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFQD 300

Query: 841  FANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFG 662
            FANGPRFQDLCQAGVKGLITAIDRFEP+RRFRLSTYGLFWIRHAIIRSMT+SSFTRV FG
Sbjct: 301  FANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFG 360

Query: 661  LESVRAEIHRAKLELLFEHQRLPTDEEIIQRVGISPERYREVMRASRPILSLHSRHVVTQ 482
            LESVR EI RAKLELLFE  R PTD+E+I+RVGISPERY+EVMRAS+P+ SLH RH VTQ
Sbjct: 361  LESVRVEIQRAKLELLFELHREPTDDEVIKRVGISPERYQEVMRASKPVASLHLRHSVTQ 420

Query: 481  EEFINGITDVDGVENENQRQXXXXXXXXXXXXXXLKPKESLVIRQRFGLDGKGDRTLGEI 302
            EEFI+GITDVDGV  +++RQ              LKPKESLVIRQR+GLDGKGDRTLGEI
Sbjct: 421  EEFISGITDVDGVGGDHRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEI 480

Query: 301  AGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 194
            +GNLNISREMVRKHEVKALMKLKHP RVDYL +++V
Sbjct: 481  SGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVV 516


>ref|XP_011001910.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Populus euphratica]
          Length = 512

 Score =  659 bits (1699), Expect = 0.0
 Identities = 353/516 (68%), Positives = 409/516 (79%), Gaps = 7/516 (1%)
 Frame = -1

Query: 1720 MGIVTISSSAARSPIGLSP--STYRSTSKRPLIVAFKADKFHNPALVAPHEQIPLPIETP 1547
            MG+V++SSSA+R+P+GLS   STY ST+KRPLIVAFKADK  NP+ VAPHEQIPLPIET 
Sbjct: 1    MGVVSVSSSASRTPLGLSTKFSTYGSTAKRPLIVAFKADKSSNPSFVAPHEQIPLPIETT 60

Query: 1546 KQHQXXXXXXXXXXXXXKAVSTDDASPCTLDVDYNEAATKLENIYKLSPAIKISDVEDXX 1367
            K  +              AV T+  SPCTL VDYNEAA KLENIYKLSP    SDVED  
Sbjct: 61   KGKKRLGKSKKSSNRLK-AVRTE-VSPCTLLVDYNEAAAKLENIYKLSPGTDTSDVEDAS 118

Query: 1366 XXXXXXRT-----SEGEEKADDGYSRHVVRNSVKKPKRLSLDKRIELRKNKDEEVVTKLK 1202
                  R      SEG+++A+D  S+ +VRN  KK KRLSL+KRI LR   +E++VT   
Sbjct: 119  GVIRRGRQRKRKISEGDKEAEDRTSKIIVRNRAKKAKRLSLEKRISLRIKNEEKLVTSAG 178

Query: 1201 IKKDSKDEHDKIEKLLREYSSSTDLGSLDWKKMKIPPVLSSAEHTWLFKLMQPMKAFLQV 1022
             +KD K+E++KI++LLREYS+STDL SLDWKKMKIPPVL+S+EH WLFKLMQPMKA LQV
Sbjct: 179  KRKDRKNENEKIDELLREYSASTDLVSLDWKKMKIPPVLTSSEHVWLFKLMQPMKALLQV 238

Query: 1021 KEQLQKDLEREPTDGELAEATNMSAAQLKKCLEVGRAARNKLIKHNLRLVLFVINKYFQD 842
            KE LQ++L REPTD ELA+AT M   Q++K + VGRAARNKLIKHNLRLVLFVI KYFQD
Sbjct: 239  KEHLQENLGREPTDVELAKATTMDVLQVRKQIAVGRAARNKLIKHNLRLVLFVIKKYFQD 298

Query: 841  FANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFG 662
            FANG +FQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMT+SSFTRV FG
Sbjct: 299  FANGTKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFG 358

Query: 661  LESVRAEIHRAKLELLFEHQRLPTDEEIIQRVGISPERYREVMRASRPILSLHSRHVVTQ 482
            LES+R+EI +AKLEL F+ +R P ++EII++V ISPERY EV RAS+P+LSLHSRH  TQ
Sbjct: 359  LESIRSEIQKAKLELWFQLKRQPMEDEIIEKVRISPERYHEVTRASKPVLSLHSRHKTTQ 418

Query: 481  EEFINGITDVDGVENENQRQXXXXXXXXXXXXXXLKPKESLVIRQRFGLDGKGDRTLGEI 302
            EEFI GI DVDG   +++RQ              LKPKESLV+RQR+GLDGKGDRTLGEI
Sbjct: 419  EEFIGGIADVDG--GDDRRQSALLRLALDDVLDSLKPKESLVVRQRYGLDGKGDRTLGEI 476

Query: 301  AGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 194
            AGNLNISREMVRKHEVKALMKLKHPTRVDYL +++V
Sbjct: 477  AGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYVV 512


>ref|XP_012440029.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Gossypium raimondii]
            gi|823214552|ref|XP_012440030.1| PREDICTED: RNA
            polymerase sigma factor sigE, chloroplastic/mitochondrial
            [Gossypium raimondii] gi|763785552|gb|KJB52623.1|
            hypothetical protein B456_008G270500 [Gossypium
            raimondii] gi|763785553|gb|KJB52624.1| hypothetical
            protein B456_008G270500 [Gossypium raimondii]
          Length = 516

 Score =  656 bits (1693), Expect = 0.0
 Identities = 348/516 (67%), Positives = 404/516 (78%), Gaps = 7/516 (1%)
 Frame = -1

Query: 1720 MGIVTISSSAARSPIGLSP--STYRSTSKRPLIVAFKADKFHNPALVAPHEQIPLPIETP 1547
            MG+V++SSSAAR+P+GL    ST R T +RP IVAFKADK +N ALV   +   LP+ET 
Sbjct: 1    MGVVSVSSSAARTPVGLGTKFSTQRCTFRRPCIVAFKADKSNNTALVTLRDHNLLPVETA 60

Query: 1546 KQHQXXXXXXXXXXXXXKAVSTDDASPCTLDVDYNEAATKLENIYKLSPAI-----KISD 1382
            K+H                  TD+ SP T+DVDYNEAA KLENIYKLSP+      K S+
Sbjct: 61   KEHPKRRGKAKKASKTVNRDFTDEGSPYTVDVDYNEAAAKLENIYKLSPSTQTFDEKGSE 120

Query: 1381 VEDXXXXXXXXRTSEGEEKADDGYSRHVVRNSVKKPKRLSLDKRIELRKNKDEEVVTKLK 1202
             E         R+ E + KAD+G  + VVR+  KK +RL LDKRIEL+KN++E+ V   +
Sbjct: 121  GETKGRQLRRKRSKESDGKADNGDDKIVVRSQTKKNRRLGLDKRIELKKNREEKSVVSGQ 180

Query: 1201 IKKDSKDEHDKIEKLLREYSSSTDLGSLDWKKMKIPPVLSSAEHTWLFKLMQPMKAFLQV 1022
             KK   +E +KI++L+R+YS+STDL SLDWKKMK+PPVL S EHTWLFKLMQPMKA L+ 
Sbjct: 181  SKKGISNESEKIDRLVRDYSASTDLVSLDWKKMKMPPVLPSTEHTWLFKLMQPMKALLEA 240

Query: 1021 KEQLQKDLEREPTDGELAEATNMSAAQLKKCLEVGRAARNKLIKHNLRLVLFVINKYFQD 842
            KE LQKDL R+PT+ ELAEATN SAAQ+++ LEVGRAARNKLIKHNLRLVLFVI KYFQD
Sbjct: 241  KENLQKDLGRDPTEDELAEATNSSAAQVRRQLEVGRAARNKLIKHNLRLVLFVIKKYFQD 300

Query: 841  FANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFG 662
            FANGPRFQDLCQAGVKGLITAIDRFEP+RRFRLSTYGLFWIRHAIIRSMT+SSFTRV FG
Sbjct: 301  FANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFG 360

Query: 661  LESVRAEIHRAKLELLFEHQRLPTDEEIIQRVGISPERYREVMRASRPILSLHSRHVVTQ 482
            LESVR EI RAKLELLFE  R PTD+E+I+RVGISPERY+EVMRAS+P+ SLH RH VTQ
Sbjct: 361  LESVRVEIQRAKLELLFELHREPTDDEVIKRVGISPERYQEVMRASKPVASLHLRHSVTQ 420

Query: 481  EEFINGITDVDGVENENQRQXXXXXXXXXXXXXXLKPKESLVIRQRFGLDGKGDRTLGEI 302
            EEFI+GITDVDGV  +++RQ              LKPKESLVIRQR+GLDGKGDRTLGEI
Sbjct: 421  EEFISGITDVDGVGGDHRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEI 480

Query: 301  AGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 194
            AGNL+ISREMVRKHEVKALMKLKHP RVDYL +++V
Sbjct: 481  AGNLSISREMVRKHEVKALMKLKHPARVDYLRRYVV 516


>gb|KJB52622.1| hypothetical protein B456_008G270500 [Gossypium raimondii]
          Length = 547

 Score =  656 bits (1693), Expect = 0.0
 Identities = 348/516 (67%), Positives = 404/516 (78%), Gaps = 7/516 (1%)
 Frame = -1

Query: 1720 MGIVTISSSAARSPIGLSP--STYRSTSKRPLIVAFKADKFHNPALVAPHEQIPLPIETP 1547
            MG+V++SSSAAR+P+GL    ST R T +RP IVAFKADK +N ALV   +   LP+ET 
Sbjct: 32   MGVVSVSSSAARTPVGLGTKFSTQRCTFRRPCIVAFKADKSNNTALVTLRDHNLLPVETA 91

Query: 1546 KQHQXXXXXXXXXXXXXKAVSTDDASPCTLDVDYNEAATKLENIYKLSPAI-----KISD 1382
            K+H                  TD+ SP T+DVDYNEAA KLENIYKLSP+      K S+
Sbjct: 92   KEHPKRRGKAKKASKTVNRDFTDEGSPYTVDVDYNEAAAKLENIYKLSPSTQTFDEKGSE 151

Query: 1381 VEDXXXXXXXXRTSEGEEKADDGYSRHVVRNSVKKPKRLSLDKRIELRKNKDEEVVTKLK 1202
             E         R+ E + KAD+G  + VVR+  KK +RL LDKRIEL+KN++E+ V   +
Sbjct: 152  GETKGRQLRRKRSKESDGKADNGDDKIVVRSQTKKNRRLGLDKRIELKKNREEKSVVSGQ 211

Query: 1201 IKKDSKDEHDKIEKLLREYSSSTDLGSLDWKKMKIPPVLSSAEHTWLFKLMQPMKAFLQV 1022
             KK   +E +KI++L+R+YS+STDL SLDWKKMK+PPVL S EHTWLFKLMQPMKA L+ 
Sbjct: 212  SKKGISNESEKIDRLVRDYSASTDLVSLDWKKMKMPPVLPSTEHTWLFKLMQPMKALLEA 271

Query: 1021 KEQLQKDLEREPTDGELAEATNMSAAQLKKCLEVGRAARNKLIKHNLRLVLFVINKYFQD 842
            KE LQKDL R+PT+ ELAEATN SAAQ+++ LEVGRAARNKLIKHNLRLVLFVI KYFQD
Sbjct: 272  KENLQKDLGRDPTEDELAEATNSSAAQVRRQLEVGRAARNKLIKHNLRLVLFVIKKYFQD 331

Query: 841  FANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFG 662
            FANGPRFQDLCQAGVKGLITAIDRFEP+RRFRLSTYGLFWIRHAIIRSMT+SSFTRV FG
Sbjct: 332  FANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFG 391

Query: 661  LESVRAEIHRAKLELLFEHQRLPTDEEIIQRVGISPERYREVMRASRPILSLHSRHVVTQ 482
            LESVR EI RAKLELLFE  R PTD+E+I+RVGISPERY+EVMRAS+P+ SLH RH VTQ
Sbjct: 392  LESVRVEIQRAKLELLFELHREPTDDEVIKRVGISPERYQEVMRASKPVASLHLRHSVTQ 451

Query: 481  EEFINGITDVDGVENENQRQXXXXXXXXXXXXXXLKPKESLVIRQRFGLDGKGDRTLGEI 302
            EEFI+GITDVDGV  +++RQ              LKPKESLVIRQR+GLDGKGDRTLGEI
Sbjct: 452  EEFISGITDVDGVGGDHRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEI 511

Query: 301  AGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 194
            AGNL+ISREMVRKHEVKALMKLKHP RVDYL +++V
Sbjct: 512  AGNLSISREMVRKHEVKALMKLKHPARVDYLRRYVV 547


>gb|AKC88737.1| sigma factor [Francoa sonchifolia]
          Length = 513

 Score =  654 bits (1688), Expect = 0.0
 Identities = 343/513 (66%), Positives = 401/513 (78%), Gaps = 4/513 (0%)
 Frame = -1

Query: 1720 MGIVTISSSAARSPIGLSP--STYRSTSKRPLIVAFKADKFHNPALVAPHEQIPLPIETP 1547
            MG+VT+SSS ARSP+GLS   ST+R T KRP IV+ KADK +N ALVAP EQIPLPI+TP
Sbjct: 1    MGVVTVSSSPARSPLGLSTKFSTHRCTLKRPSIVSLKADKTNNIALVAPQEQIPLPIQTP 60

Query: 1546 KQHQXXXXXXXXXXXXXKAVSTDDASPCTLDVDYNEAATKLENIYKLSPAIKISDVEDXX 1367
            K+ +             KAVSTD  SPCTL++D+NEAA KLENIYKLSP    SD ED  
Sbjct: 61   KKQRKRLGRAIKTSKRVKAVSTDVTSPCTLELDFNEAAAKLENIYKLSPPTDCSDTEDID 120

Query: 1366 XXXXXXRT--SEGEEKADDGYSRHVVRNSVKKPKRLSLDKRIELRKNKDEEVVTKLKIKK 1193
                  R   + G++  +   S +VVRN  KK KRLSLD+RI L +NK+ +  +  + K 
Sbjct: 121  GMKSRHRKRMNGGDDTGEKRTSDNVVRNRTKKVKRLSLDRRISLIRNKEGDADSSSRSKI 180

Query: 1192 DSKDEHDKIEKLLREYSSSTDLGSLDWKKMKIPPVLSSAEHTWLFKLMQPMKAFLQVKEQ 1013
            D K+E+  ++ L+REYS+STDL SLDWKKMKIPPVLSS EH WLFKLMQPMK  LQ+KE 
Sbjct: 181  DQKNENYSVDWLVREYSASTDLVSLDWKKMKIPPVLSSLEHAWLFKLMQPMKELLQLKEN 240

Query: 1012 LQKDLEREPTDGELAEATNMSAAQLKKCLEVGRAARNKLIKHNLRLVLFVINKYFQDFAN 833
            L KD  REPTD ELAEA NM+  +++K ++VGRAARNKLIKHNLRLVLFV+NKYFQDFAN
Sbjct: 241  LHKDFSREPTDYELAEALNMNVIEMRKDMDVGRAARNKLIKHNLRLVLFVMNKYFQDFAN 300

Query: 832  GPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLES 653
            GPRFQDLCQAGVKGLITAIDRFEPKRR RLSTYGLFWIRHAI RS+T+SSFTRV FGLES
Sbjct: 301  GPRFQDLCQAGVKGLITAIDRFEPKRRVRLSTYGLFWIRHAITRSLTLSSFTRVSFGLES 360

Query: 652  VRAEIHRAKLELLFEHQRLPTDEEIIQRVGISPERYREVMRASRPILSLHSRHVVTQEEF 473
            VR EI RAKLELLFE  RLPT++EII++VGIS ERY EVMRA++P+ SLH++H++T EEF
Sbjct: 361  VRVEIQRAKLELLFELHRLPTEDEIIEKVGISFERYHEVMRAAKPVYSLHAKHMITHEEF 420

Query: 472  INGITDVDGVENENQRQXXXXXXXXXXXXXXLKPKESLVIRQRFGLDGKGDRTLGEIAGN 293
            IN +TDVDG+  + +RQ              LKPKESLVIRQR+GLDGKGDRTLGEIAGN
Sbjct: 421  INALTDVDGIHGDQRRQPALFRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGN 480

Query: 292  LNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 194
            LNISREMVRKHEVKALMKLKHP RVDYL +++V
Sbjct: 481  LNISREMVRKHEVKALMKLKHPARVDYLRRYLV 513


>ref|XP_011007924.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Populus euphratica]
          Length = 513

 Score =  654 bits (1686), Expect = 0.0
 Identities = 352/517 (68%), Positives = 409/517 (79%), Gaps = 8/517 (1%)
 Frame = -1

Query: 1720 MGIVTISSSAARSPIGLSP--STYRSTSKRPLIVAFKADKFHNPALVAPHEQIPLPIETP 1547
            MGIV++SSSA+ +P+G S   +T RST+KRPLIVAFKADK +  ALVAPHEQIPLPIET 
Sbjct: 1    MGIVSVSSSASWTPLGFSTKFTTCRSTAKRPLIVAFKADKSNETALVAPHEQIPLPIETT 60

Query: 1546 KQHQXXXXXXXXXXXXXKAVSTDDASPCTLDVDYNEAATKLENIYKLSPAIKISDVEDXX 1367
            K+ +              AV T+  SPCTL VDYNEAA KLENIYKLSP    SDVED  
Sbjct: 61   KEEKRHGKSKKSSNRLK-AVRTE-VSPCTLGVDYNEAAAKLENIYKLSPGTDTSDVEDVN 118

Query: 1366 XXXXXXR-----TSEGEEKADDGYSRHVVRNSVKKPKRLSLDKRIELRKNKDEEVVTKLK 1202
                  R     TSE E++ D   S+ +VRN  KK KRLSL KRI LR   DE++VT + 
Sbjct: 119  GVLRRCRQRKRKTSECEKEDDGRTSKIIVRNQAKKAKRLSLQKRIALRIKSDEKLVTSVG 178

Query: 1201 IKKDSKDEHDKIEKLLR-EYSSSTDLGSLDWKKMKIPPVLSSAEHTWLFKLMQPMKAFLQ 1025
             +K  K+E++KI++L+R EYSSSTDL SLDWKKMKIPPVL+SAEH WLFKLMQPMKA LQ
Sbjct: 179  KRKGRKNENEKIDELVRGEYSSSTDLASLDWKKMKIPPVLTSAEHAWLFKLMQPMKASLQ 238

Query: 1024 VKEQLQKDLEREPTDGELAEATNMSAAQLKKCLEVGRAARNKLIKHNLRLVLFVINKYFQ 845
            VKE LQ++  REPT+GELAEAT+M   Q++K +EVGRAARNKLIKHNLRLVLFVINKYFQ
Sbjct: 239  VKEHLQENSGREPTEGELAEATDMDVLQVRKQIEVGRAARNKLIKHNLRLVLFVINKYFQ 298

Query: 844  DFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPF 665
            D+ANGPR+QDLCQAGVKGL+TAIDRFEPKRRFRLSTYGLFWIRHAIIRSMT+SSFTRV F
Sbjct: 299  DYANGPRYQDLCQAGVKGLMTAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSF 358

Query: 664  GLESVRAEIHRAKLELLFEHQRLPTDEEIIQRVGISPERYREVMRASRPILSLHSRHVVT 485
            GLES+R+EI +AKLEL F+ QR PT EEII++VGIS +RY EV RAS+P+LSLHS+H  T
Sbjct: 359  GLESIRSEIQKAKLELWFQLQRKPTGEEIIEKVGISIQRYHEVTRASKPVLSLHSKHKTT 418

Query: 484  QEEFINGITDVDGVENENQRQXXXXXXXXXXXXXXLKPKESLVIRQRFGLDGKGDRTLGE 305
            QEE I+G+ DV+G   +++RQ              LKPKESLV+RQRFGLDGKGDRTLGE
Sbjct: 419  QEELISGVADVNG--GDDRRQSALLRLALDDVLDSLKPKESLVVRQRFGLDGKGDRTLGE 476

Query: 304  IAGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 194
            IAGNLNISREMVRKHE KALMKLKHPTRVDYLC+++V
Sbjct: 477  IAGNLNISREMVRKHEAKALMKLKHPTRVDYLCRYVV 513


>gb|AKC88745.1| sigma factor [Melianthus villosus]
          Length = 513

 Score =  653 bits (1685), Expect = 0.0
 Identities = 345/514 (67%), Positives = 403/514 (78%), Gaps = 5/514 (0%)
 Frame = -1

Query: 1720 MGIVTISSSAARSPIGLS--PSTYRSTSKRPLIVAFKADKFHNPALVAPHEQIPLPIETP 1547
            M +VT+SSS ARSP+GLS  PS +R T KRPLIVAFK DK ++ ALVAPH+QIPLP+   
Sbjct: 1    MEVVTVSSSVARSPLGLSTKPSNHRCTLKRPLIVAFKTDKINDIALVAPHDQIPLPVANA 60

Query: 1546 KQHQXXXXXXXXXXXXXKAVSTDDASPCTLDVDYNEAATKLENIYKLSPAIKISDVEDXX 1367
            K+ Q             K V  D++SPCTL++D+NEAA KLENIYKLSP    SDVE+  
Sbjct: 61   KKQQKRLGRGTKPSKRTKVVYADESSPCTLELDFNEAAAKLENIYKLSPPSDTSDVENQD 120

Query: 1366 XXXXXXRT---SEGEEKADDGYSRHVVRNSVKKPKRLSLDKRIELRKNKDEEVVTKLKIK 1196
                  R    + G++      + +VVRN  KK KRLSLDKR+ L ++K++  V++ + K
Sbjct: 121  GLMDRGRRRRRNRGDDTTQKRTTDNVVRNQTKKVKRLSLDKRVALIRHKEDVDVSRRR-K 179

Query: 1195 KDSKDEHDKIEKLLREYSSSTDLGSLDWKKMKIPPVLSSAEHTWLFKLMQPMKAFLQVKE 1016
             D K++   IE L+REYSSSTD+ SLDWKKMKIPPVLSS+EH+WLFKLMQPMK  L  KE
Sbjct: 180  TDHKNKSYNIEILVREYSSSTDMASLDWKKMKIPPVLSSSEHSWLFKLMQPMKGLLNFKE 239

Query: 1015 QLQKDLEREPTDGELAEATNMSAAQLKKCLEVGRAARNKLIKHNLRLVLFVINKYFQDFA 836
             L+ DL REPTD ELA+ATNM+  +LKK +EVGRAARNKLIKHNLRLVLFVINKYFQDFA
Sbjct: 240  NLKTDLGREPTDYELADATNMNVVKLKKEMEVGRAARNKLIKHNLRLVLFVINKYFQDFA 299

Query: 835  NGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLE 656
            NG RFQDLCQAGVKGLITAIDRFEPKR+FRLSTYGLFWIRHAI RSMT+SSFTRV FGLE
Sbjct: 300  NGSRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAITRSMTLSSFTRVSFGLE 359

Query: 655  SVRAEIHRAKLELLFEHQRLPTDEEIIQRVGISPERYREVMRASRPILSLHSRHVVTQEE 476
            SVRAEI +AK ELLF  QRLPT+EEII++VG+SPERY EV+RAS+P+LSLH++H++TQEE
Sbjct: 360  SVRAEIQKAKFELLFRLQRLPTEEEIIEKVGVSPERYHEVLRASKPVLSLHAKHMITQEE 419

Query: 475  FINGITDVDGVENENQRQXXXXXXXXXXXXXXLKPKESLVIRQRFGLDGKGDRTLGEIAG 296
            FIN ITDVDGV  + +RQ              LKPKESLVIRQR+GLDGKGDRTLGEIAG
Sbjct: 420  FINVITDVDGVGADQRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAG 479

Query: 295  NLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 194
            NLNISREMVRKHEVKALMKLKHP RVDYL  ++V
Sbjct: 480  NLNISREMVRKHEVKALMKLKHPARVDYLRPYLV 513


>ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223547495|gb|EEF48990.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 501

 Score =  652 bits (1682), Expect = 0.0
 Identities = 349/515 (67%), Positives = 406/515 (78%), Gaps = 6/515 (1%)
 Frame = -1

Query: 1720 MGIVTISSSAARSPIGLSP--STYRSTSKRPLIVAFKADKFHNPALVAPHEQIPLPIETP 1547
            MG+VT SSSAAR+P+GLS   STYRST KR L+VAFK DK ++  LV P E+ PLPIET 
Sbjct: 1    MGVVTASSSAARTPLGLSLKFSTYRSTVKRSLVVAFKEDKANDIILVPPRERTPLPIETS 60

Query: 1546 KQHQXXXXXXXXXXXXXKAVSTDDASPCTLDVDYNEAATKLENIYKLSPAIKISDVEDXX 1367
            K  +                +  + S  TL+VDYNEAA KLENIYKLSPA   SDV+   
Sbjct: 61   KGKKRRGK------------TNREVSSGTLEVDYNEAAAKLENIYKLSPATDTSDVDING 108

Query: 1366 XXXXXXR----TSEGEEKADDGYSRHVVRNSVKKPKRLSLDKRIELRKNKDEEVVTKLKI 1199
                  +    T EG+EKA++  SR +VRN  KK KRLSLDKRI L+KN++EEVV  ++ 
Sbjct: 109  LIRKGRQRKRKTGEGDEKAENRTSRTIVRNRAKKTKRLSLDKRIALKKNEEEEVVGPIRK 168

Query: 1198 KKDSKDEHDKIEKLLREYSSSTDLGSLDWKKMKIPPVLSSAEHTWLFKLMQPMKAFLQVK 1019
            KKDSKD+++KIE+L+R YS+ST+L SLDW+KMKIPPVL S EH WLFKLMQPMK  L VK
Sbjct: 169  KKDSKDDNEKIEELVRTYSASTNLVSLDWRKMKIPPVLPSTEHAWLFKLMQPMKTLLPVK 228

Query: 1018 EQLQKDLEREPTDGELAEATNMSAAQLKKCLEVGRAARNKLIKHNLRLVLFVINKYFQDF 839
              LQK+L R+PTDGELAEATNM+  +++K LEVGRAARNKLIKHNLRLV+FV+NKYFQDF
Sbjct: 229  ADLQKNLGRDPTDGELAEATNMNVEKVRKQLEVGRAARNKLIKHNLRLVMFVMNKYFQDF 288

Query: 838  ANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGL 659
            ANGPRFQDLCQAGVKGLITAIDRFEP+RRF+LSTY LFWIRHAIIRSMT+SSFT+V FGL
Sbjct: 289  ANGPRFQDLCQAGVKGLITAIDRFEPQRRFQLSTYSLFWIRHAIIRSMTLSSFTKVSFGL 348

Query: 658  ESVRAEIHRAKLELLFEHQRLPTDEEIIQRVGISPERYREVMRASRPILSLHSRHVVTQE 479
            ESVR EI +AKLELL E QR PT+EEII+RVGIS ERY EV+RA++P LSLH+RH VTQE
Sbjct: 349  ESVRTEIQKAKLELLIELQRRPTEEEIIERVGISAERYHEVIRAAKPALSLHARHAVTQE 408

Query: 478  EFINGITDVDGVENENQRQXXXXXXXXXXXXXXLKPKESLVIRQRFGLDGKGDRTLGEIA 299
            EFINGITD+DG   +N+RQ              LKPKESLVIRQR+GLDGKGDRTLGEIA
Sbjct: 409  EFINGITDIDG--GDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIA 466

Query: 298  GNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 194
            GNLNISREMVRK+EVKALMKLKHP RVDYL +++V
Sbjct: 467  GNLNISREMVRKYEVKALMKLKHPARVDYLRRYVV 501


>ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Fragaria vesca subsp. vesca]
          Length = 520

 Score =  652 bits (1682), Expect = 0.0
 Identities = 345/520 (66%), Positives = 410/520 (78%), Gaps = 11/520 (2%)
 Frame = -1

Query: 1720 MGIVTISSSAARSPIGLSP---STYRSTSKRPLIVAFKADKFHNPALVAPHEQIPLPIET 1550
            MG+VT+SSS +R+P+GLS    S+ RST ++PLIVAF+ DK    ALVAP E++PLPIET
Sbjct: 1    MGVVTVSSSVSRTPLGLSTNLVSSQRSTLRKPLIVAFRTDKSDKKALVAPQEKVPLPIET 60

Query: 1549 PKQHQXXXXXXXXXXXXXKAVSTDDASPCTLDVDYNEAATKLENIYKLSPAIKISDVEDX 1370
             K+ Q             KA   ++A  C L++DYNEAA KLEN+YK SP  + SDVE+ 
Sbjct: 61   GKKVQKRLGKARKLPKSVKAALIEEAPTCDLELDYNEAAAKLENLYKRSPETEASDVENV 120

Query: 1369 XXXXXXXRT------SEGEEKADDGYSRHVVRNSV-KKPKRLSLDKRIELRKNKDEEVVT 1211
                           SE ++K +   S  +V  SV KK KRLSLDKR+ L+ NKDE+V  
Sbjct: 121  DGLMIKRGRKRRKKISEVDDKVEKRTSDDIVVRSVTKKAKRLSLDKRVALKWNKDEKVAA 180

Query: 1210 KL-KIKKDSKDEHDKIEKLLREYSSSTDLGSLDWKKMKIPPVLSSAEHTWLFKLMQPMKA 1034
             + + +KD + E++ +E+L+REYS+STDL SLDWKKM+IPPVLSS+EHTWLFKLMQPMK 
Sbjct: 181  SVVRKRKDKRSENEMMEELVREYSASTDLVSLDWKKMRIPPVLSSSEHTWLFKLMQPMKG 240

Query: 1033 FLQVKEQLQKDLEREPTDGELAEATNMSAAQLKKCLEVGRAARNKLIKHNLRLVLFVINK 854
             L+VKE LQKDL REP  GELAEATNM+  Q+K+ LEVGRAARNKLIKHNLRLVLFVINK
Sbjct: 241  LLEVKEILQKDLGREPNKGELAEATNMTVVQVKRHLEVGRAARNKLIKHNLRLVLFVINK 300

Query: 853  YFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTR 674
            YFQDFANGP+FQDLCQAGVKGLITAIDRFEP+RRFRLSTYGLFWIRHAIIRSMT+SSFTR
Sbjct: 301  YFQDFANGPKFQDLCQAGVKGLITAIDRFEPQRRFRLSTYGLFWIRHAIIRSMTLSSFTR 360

Query: 673  VPFGLESVRAEIHRAKLELLFEHQRLPTDEEIIQRVGISPERYREVMRASRPILSLHSRH 494
            V FGLESVRAEI +AKLE+L + +R+PT++EII++VGISPERY EVMRAS+P+ SL+SRH
Sbjct: 361  VSFGLESVRAEIQKAKLEMLVQLKRMPTEDEIIEKVGISPERYHEVMRASKPVFSLNSRH 420

Query: 493  VVTQEEFINGITDVDGVENENQRQXXXXXXXXXXXXXXLKPKESLVIRQRFGLDGKGDRT 314
             VTQEEFINGITDVDGV+ +N+R+              LKPKESLVIRQR+GLDGKGDRT
Sbjct: 421  SVTQEEFINGITDVDGVDGDNRRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRT 480

Query: 313  LGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 194
            LGEIAGNLNISREMVRKHEVKALMKLKHP RVDYL +++V
Sbjct: 481  LGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 520


>ref|XP_010266467.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Nelumbo nucifera]
          Length = 514

 Score =  648 bits (1671), Expect = 0.0
 Identities = 335/515 (65%), Positives = 406/515 (78%), Gaps = 7/515 (1%)
 Frame = -1

Query: 1720 MGIVTISSSAARSPIGLSP--STYRSTSKRPLIVAFKADKFHNPALVAPHEQIPLPIETP 1547
            MG+VT+SSS++++P+GLS   S +++  KRPLI+AFK DK  + ALV  HE IPLP++TP
Sbjct: 1    MGVVTVSSSSSQTPLGLSSRFSVHQTQLKRPLILAFKTDKAKDRALVTHHEPIPLPMDTP 60

Query: 1546 KQHQXXXXXXXXXXXXXKAVSTDDASPCTLDVDYNEAATKLENIYKLSPAIKISDVEDXX 1367
            K++Q             K V +D+AS CT+++DYN+ A KLE+IYKLSP   +SDV+D  
Sbjct: 61   KENQKRLRRATKPSKRVKVVCSDEASSCTIEMDYNDVAAKLESIYKLSPPTDVSDVDDTD 120

Query: 1366 XXXXXXRTS-----EGEEKADDGYSRHVVRNSVKKPKRLSLDKRIELRKNKDEEVVTKLK 1202
                  R +     E + K     S +V+RN   K KRLSLD+RI LR+ K+E  V    
Sbjct: 121  RVGRRRRRTRKKLGEADRKTGKESSDNVIRNH-NKNKRLSLDRRIALRRKKEEGAVQLSG 179

Query: 1201 IKKDSKDEHDKIEKLLREYSSSTDLGSLDWKKMKIPPVLSSAEHTWLFKLMQPMKAFLQV 1022
            +K+ SK++ D ++KL+ EYS STDL SLDWKKMKIPPVL S+EH WLFKLMQPM A  Q+
Sbjct: 180  VKEGSKEDGD-VDKLVGEYSVSTDLASLDWKKMKIPPVLPSSEHAWLFKLMQPMNALFQM 238

Query: 1021 KEQLQKDLEREPTDGELAEATNMSAAQLKKCLEVGRAARNKLIKHNLRLVLFVINKYFQD 842
            KE L +DL REPTDGELA++TNMS  Q+++C+EVGRAARN+LIKHNLRLVLFVINKYFQ+
Sbjct: 239  KENLHRDLGREPTDGELADSTNMSVFQVRRCIEVGRAARNRLIKHNLRLVLFVINKYFQE 298

Query: 841  FANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFG 662
            FANGP+FQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAI+RSMT+SSFTRV FG
Sbjct: 299  FANGPKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIMRSMTLSSFTRVSFG 358

Query: 661  LESVRAEIHRAKLELLFEHQRLPTDEEIIQRVGISPERYREVMRASRPILSLHSRHVVTQ 482
            LESVR EI RAKLEL+FE +RLPT+EEII++VGISPERY EV++AS+P+ SLHSRH +TQ
Sbjct: 359  LESVRVEIQRAKLELMFELERLPTEEEIIKKVGISPERYHEVIKASKPVFSLHSRHAITQ 418

Query: 481  EEFINGITDVDGVENENQRQXXXXXXXXXXXXXXLKPKESLVIRQRFGLDGKGDRTLGEI 302
            EEFINGITD++GV  + +RQ              LKPKESLVIRQR+GLDGKGDRTLGEI
Sbjct: 419  EEFINGITDIEGVGGDKRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEI 478

Query: 301  AGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHM 197
            AGNLNISREMVRKHEVKALMKLKHPTRVDYL +++
Sbjct: 479  AGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYI 513