BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Wisteria21_contig00005527
         (2452 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_009027317.1| hypothetical chloroplast RF19 (chloroplast) ...   939   0.0  
ref|YP_009175804.1| hypothetical chloroplast RF1 (chloroplast) [...   867   0.0  
ref|YP_009027154.1| hypothetical chloroplast RF19 [Trifolium aur...   798   0.0  
ref|YP_009027078.1| hypothetical chloroplast RF19 [Trifolium gra...   788   0.0  
ref|YP_009109817.1| hypothetical chloroplast RF19 (chloroplast) ...   782   0.0  
gb|AIJ28079.1| hypothetical chloroplast RF19 (chloroplast) [Trif...   738   0.0  
ref|YP_009109892.1| hypothetical chloroplast RF19 (chloroplast) ...   727   0.0  
ref|YP_009109967.1| hypothetical chloroplast RF19 (chloroplast) ...   723   0.0  
ref|YP_009046865.1| hypothetical chloroplast RF19 (chloroplast) ...   714   0.0  
ref|YP_009141654.1| hypothetical chloroplast RF19 (chloroplast) ...   708   0.0  
ref|YP_009141729.1| hypothetical chloroplast RF19 (chloroplast) ...   706   0.0  
ref|YP_009033557.1| hypothetical chloroplast RF19 (chloroplast) ...   704   0.0  
gb|AGS43959.1| hypothetical chloroplast RF19 [Vicia faba]             689   0.0  
gb|AFR60005.1| hypothetical chloroplast RF1 [Medicago truncatula]     679   0.0  
gb|AFR60081.1| hypothetical chloroplast RF1 [Medicago truncatula]     677   0.0  
ref|YP_009141759.1| hypothetical chloroplast RF19 (chloroplast) ...   676   0.0  
ref|XP_003621686.2| membrane protein Ycf1, putative [Medicago tr...   676   0.0  
ref|YP_008145836.1| hypothetical chloroplast RF1 (chloroplast) [...   675   0.0  
ref|YP_001381682.1| hypothetical chloroplast RF1 [Medicago trunc...   673   0.0  
gb|AGV52559.1| hypothetical chloroplast RF1 (chloroplast) [Medic...   666   0.0  

>ref|YP_009027317.1| hypothetical chloroplast RF19 (chloroplast) [Glycyrrhiza glabra]
            gi|532693509|gb|AGU00114.1| hypothetical chloroplast RF19
            (chloroplast) [Glycyrrhiza glabra]
          Length = 1779

 Score =  939 bits (2427), Expect = 0.0
 Identities = 540/920 (58%), Positives = 603/920 (65%), Gaps = 104/920 (11%)
 Frame = -1

Query: 2449 RYTEKKTVISSHFCFLTASGIPIQSPFSDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 2270
            R TEKK V    FC+LT  G  ++SPF+D                               
Sbjct: 870  RSTEKKNVKKKSFCYLTICGTQVESPFADHIPNPFSFFDPIFKIVKKKMKKKLKNSFFLV 929

Query: 2269 XXXXXXXXXXXXXXXLTILKERRKWTIQSLLKSILFRFIKIDEIDEIGENKKDSTISKNN 2090
                            TI KER KWT +S+LKSI FRF KIDE+ E   +KKDSTIS NN
Sbjct: 930  LKVLNERQKGFL----TISKERGKWTFKSILKSIPFRFKKIDELSE---SKKDSTISNNN 982

Query: 2089 PMIYESPVLIQSISWTNSCSLTEKRIKDLNVKTKTIINEIEKMTKEKEGGVITSEKNLNP 1910
            PMIYESPV+IQSI+WTNS SLTEK+IKDLNVKTKTIIN+IEKM     G +ITSE N N 
Sbjct: 983  PMIYESPVVIQSINWTNS-SLTEKKIKDLNVKTKTIINQIEKM-----GEIITSENNFNS 1036

Query: 1909 NKTTYDAKRLELQKNIFQILQRRNVRLTRKLYSFFPFLMERVYIDIFLSIISIPRTKVQL 1730
            NKTTYDA+R ELQKNI QIL+RRNVRLTRK YSFF F MERVYIDIFL IISIPR  VQ+
Sbjct: 1037 NKTTYDAQRFELQKNILQILKRRNVRLTRKSYSFFKFFMERVYIDIFLYIISIPRINVQV 1096

Query: 1729 FLEXXXXXXXXXXXXXXXNAERIDKTNQSIIPFMSIIHKSRRIRKTNSPNSYDVSSLSQA 1550
            FLE               NAERIDK NQSIIPFMSIIHKS  I  TNS NS DVSSLSQA
Sbjct: 1097 FLESTKKMINESTYNKKTNAERIDKQNQSIIPFMSIIHKSCNITNTNSKNSCDVSSLSQA 1156

Query: 1549 YVFFKLSQTQVINLNKYKLRSVFESHGRSFFLKNEIKNSFFRIQGISNSKLRHKNLPDSV 1370
            YVFFKLSQ+QVIN  KYKLRSVFESHGRSFFLKNEIKN F RIQGI +SKL HKNLPDSV
Sbjct: 1157 YVFFKLSQSQVINAYKYKLRSVFESHGRSFFLKNEIKNYFCRIQGICHSKLSHKNLPDSV 1216

Query: 1369 MNQWKNWLKVHHQYDLPQSRWSRLVPQNWRNRIHEHRVAQNKDLTEYDSYEKTPLILYKK 1190
            MNQW NWLKVH+QYDLPQSRWSRLVPQNWRNRI+EHRVAQNKDLTEYDS EKT LILYKK
Sbjct: 1217 MNQWTNWLKVHYQYDLPQSRWSRLVPQNWRNRINEHRVAQNKDLTEYDSDEKTRLILYKK 1276

Query: 1189 EPIDVKDFLERNLXXXXXXXXKQNKYDLLSYKFLNYADKKESYIHG--SPFQANKKKAIS 1016
            + +D+    ++          KQ KYDLLSYKFLNYAD KESYI+G  SPFQA KK+AIS
Sbjct: 1277 QQVDLVKLKKK------FKIKKQYKYDLLSYKFLNYADNKESYIYGYRSPFQAKKKQAIS 1330

Query: 1015 Y---TRTKEFFD-----------RADAIIDMEKNLDRKYFDWMVINRKIPKPSVSNSSYL 878
            Y   T+ KEF D             D IIDMEKN+DRKYFDWM +N +I   S+SN  + 
Sbjct: 1331 YNYNTQKKEFLDITGDISINNYIAEDTIIDMEKNMDRKYFDWMEMNVEILNHSISNPKFW 1390

Query: 877  YFLKLKRLYDAYKKNPWIMPIKSLFFQFYGNQ---------------------------- 782
            +FLK   LYDAYK NPWI+P + LFF FYG                              
Sbjct: 1391 FFLKFWILYDAYKNNPWIIPSEFLFFHFYGKNVSKTKNFTGKKKRIDDILSSSKKKKSLE 1450

Query: 781  ---------KAEYASRVDLNSSFSNQERDI--------------ERLDNKKRAKSIERD- 674
                     K EYASRVDL SSFSNQERD               ER D K+  KSI +  
Sbjct: 1451 FELETGNPAKEEYASRVDLKSSFSNQERDFSNQEIDFSNQEIDYERSDRKRVDKSINKKE 1510

Query: 673  ----------FLVRKYLGFHLNYSTPLDEIMMNNIQLNYLLVGLQKTKKIMIDSIKKGEL 524
                      F++ KYLGFHLN+ T LDE +MNNIQ+  L+V L+K K+ +IDSI++GEL
Sbjct: 1511 YRKNIRIELAFILTKYLGFHLNFHTSLDERIMNNIQVYCLMVDLKKKKQFVIDSIQRGEL 1570

Query: 523  NLESLVMFPNQKDFTL-----NNELLEKEMFFREPVRLPRKNNEQFLMYQTISLSLNHKN 359
            +L+ LV+  NQKDFTL     + EL+E ++FF EPVRL RKN EQF MYQT  LSL HK+
Sbjct: 1571 SLDYLVIQKNQKDFTLTKEGGDKELMENKIFFVEPVRLSRKNYEQFFMYQTTRLSLIHKS 1630

Query: 358  LPQMFQRNPEKSR---------------------KDKNHYDLLVPENILSTRRRRELRIL 242
              Q+ Q NPEKSR                     K+KNHYDL VPEN+LS RRRRELRIL
Sbjct: 1631 NRQINQGNPEKSRLDRKNFDKYIPRTRDQKITENKEKNHYDLFVPENLLSARRRRELRIL 1690

Query: 241  LCFNPRNRNSVDKNKIFXXXXXXXXXXXXXXKCCQVLAKNKDLDREKKKLMNLKFFLWPN 62
            +CFN RN NSV +N IF               CCQVLAKNKDLDRE+KKLMN K FLWPN
Sbjct: 1691 ICFNLRNGNSVHRNTIFDNENKINN-------CCQVLAKNKDLDREQKKLMNFKLFLWPN 1743

Query: 61   YRLEDLACINRYWFDTHNGS 2
            YRLEDLACINRYWFDTHNGS
Sbjct: 1744 YRLEDLACINRYWFDTHNGS 1763


>ref|YP_009175804.1| hypothetical chloroplast RF1 (chloroplast) [Astragalus nakaianus]
            gi|937180884|gb|ALH42735.1| hypothetical chloroplast RF1
            (chloroplast) [Astragalus nakaianus]
          Length = 1736

 Score =  867 bits (2241), Expect = 0.0
 Identities = 518/913 (56%), Positives = 582/913 (63%), Gaps = 96/913 (10%)
 Frame = -1

Query: 2452 KRYTEKKTVISSHFCFLTASGIPIQSPFSDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 2273
            KR+TEKK V   +F FLTA G  ++S   +                              
Sbjct: 845  KRFTEKKNVKKKNFWFLTACGTQVESYLDN----YFPNPFSFLGPIFKKIKKQLKKNFKN 900

Query: 2272 XXXXXXXXXXXXXXXXLTILKERRKWTIQSLLKSILFRFIKIDEIDEIGENKKDSTISKN 2093
                            +TILKE  KW I    KSILFRF     I E+GEN K+STISKN
Sbjct: 901  RFFLVLQVLNERKKWFVTILKEIEKWNI----KSILFRF---KNIYELGENNKNSTISKN 953

Query: 2092 NPMIYESPVLIQSISWTNSCSLTEKRIKDLNVKTKTIINEIEKMTKEKEGGVITSEKNLN 1913
            NP IYESPV+I S++WTNS S TEKRIKDLNVKTKTII EIEKMT E  GGVITSEKNLN
Sbjct: 954  NPTIYESPVIIHSMNWTNS-SFTEKRIKDLNVKTKTIITEIEKMTNE--GGVITSEKNLN 1010

Query: 1912 PNKTTYDAKRLELQKNIFQILQRRNVRLTRKLYSFFPFLMERVYIDIFLSIISIPRTKVQ 1733
             NKTTYDAKR ELQKNI QILQRR VRLTRK YSFF F MER+YIDI L II IPR  +Q
Sbjct: 1011 SNKTTYDAKRFELQKNILQILQRRIVRLTRKSYSFFKFFMERIYIDILLCIIGIPRINIQ 1070

Query: 1732 LFLEXXXXXXXXXXXXXXXNAERIDKTNQSIIPFMSIIHKSRRIRKTNSPNSYDVSSLSQ 1553
            LFLE               NAERIDKT+QSIIPFMSIIHKS  I  TNS NS DVSSLSQ
Sbjct: 1071 LFLESTKNIVTKSIANKKTNAERIDKTHQSIIPFMSIIHKSCNITNTNSENSCDVSSLSQ 1130

Query: 1552 AYVFFKLSQTQVINLNKYKLRSVFESHGRSFFLKNEIKNSFFRIQGI--SNSKLRHKNLP 1379
            AYVFFKLSQ QVIN  KYKLRS+FESH RSFFLKNEIKN FFRIQGI  SNSKLRHKN P
Sbjct: 1131 AYVFFKLSQIQVINGYKYKLRSIFESHERSFFLKNEIKNYFFRIQGIFNSNSKLRHKNRP 1190

Query: 1378 DSVMNQWKNWLKVHHQYDLPQSRWSRLVPQNWRNRIHEHRVAQNKDLTEYDSYEKTPLIL 1199
             SVMNQW NWLKVH+QYDLP+SRWSRLVPQNWRNRI++HRVAQNKDL  YDSY+KT LIL
Sbjct: 1191 HSVMNQWTNWLKVHYQYDLPESRWSRLVPQNWRNRINKHRVAQNKDLINYDSYDKTRLIL 1250

Query: 1198 YK--KEPIDVKDFLERNLXXXXXXXXKQNKYDLLSYKFLNYADKKESYIHG--SPFQANK 1031
            YK   E +D+ +F ++          KQ +YDLLSYK+LNYADKK SYI+G  SPFQ NK
Sbjct: 1251 YKNENEQVDLLNFQKK--------IKKQYRYDLLSYKYLNYADKKNSYIYGYRSPFQTNK 1302

Query: 1030 KKAISY---TRTKEFFD-----------RADAIIDMEKNLDRKYFDWMVINRKIPKPSVS 893
             + ISY   T  KEFFD             DAIIDMEKNLDRKYFDWMV+N +IP  S+S
Sbjct: 1303 NQTISYNDNTCKKEFFDITGDISIKNYLAEDAIIDMEKNLDRKYFDWMVMNVEIPNRSIS 1362

Query: 892  NSS----YLYFLKLKRLYDAYKKNPWIMPIKSLFFQFYGN-------------------- 785
             S+    + +F KL R YDAYKKNPWI+PIK LFF FYG                     
Sbjct: 1363 KSNPKSKFWFFSKLSRFYDAYKKNPWIVPIKFLFFPFYGKDVSKMKNITGTKKNKYLNFD 1422

Query: 784  ----------------------QKAEYASRVDLNSSFS---NQERDIERLDNKKRAKSIE 680
                                  +   Y      N S+S   +Q  D++R D     K  E
Sbjct: 1423 FDILKGAQEEADAGPLGLYLSLENQAYEESYWENGSYSINRDQYIDVDRNDYLNDLKG-E 1481

Query: 679  RDFLVRKYLGFHLNYSTPLDEIMMNNIQLNYLLVGLQKTKKIMIDSIKKGELNLESLVMF 500
            + FL+ KYLGFHLN+   L E +MN I+   LL+ L+  KKI I SIK+GEL+L+++ + 
Sbjct: 1482 QAFLLDKYLGFHLNFDNFLHERIMNQIKFYCLLIRLKNLKKIFIISIKRGELSLDTMAI- 1540

Query: 499  PNQKDFTL-----NNELLEKEMFFREPVRLPRKNNEQFLMYQTISLSLNHKNLPQMFQRN 335
             N  DFTL       EL+EK++F  EPVRL RKN EQF MYQTI+LSL HKN  Q FQRN
Sbjct: 1541 NNHTDFTLTGFRDTKELIEKQIFSMEPVRLSRKNYEQFFMYQTITLSLIHKNKRQFFQRN 1600

Query: 334  PEKSR---------------------KDKNHYDLLVPENILSTRRRRELRILLCFNPRN- 221
             EK R                     KDKNH DLLVPEN+LS RRRRELRIL+C NPRN 
Sbjct: 1601 AEKGRVDKKNFDKNIPRTRNQKITENKDKNHTDLLVPENLLSNRRRRELRILICLNPRNT 1660

Query: 220  RNSVDKNKIFXXXXXXXXXXXXXXKCCQVLAKNKDLDREKKKLMNLKFFLWPNYRLEDLA 41
            RN+++ N+                  CQVLAKNKDLD E KKLMNLKFFLWPNYRLEDLA
Sbjct: 1661 RNTINCNE------------NKINTGCQVLAKNKDLDIETKKLMNLKFFLWPNYRLEDLA 1708

Query: 40   CINRYWFDTHNGS 2
            CINRYWFDTHNGS
Sbjct: 1709 CINRYWFDTHNGS 1721


>ref|YP_009027154.1| hypothetical chloroplast RF19 [Trifolium aureum]
            gi|514994831|gb|AGO63808.1| hypothetical chloroplast RF19
            [Trifolium aureum]
          Length = 1772

 Score =  798 bits (2060), Expect = 0.0
 Identities = 470/810 (58%), Positives = 545/810 (67%), Gaps = 71/810 (8%)
 Frame = -1

Query: 2218 ILKERRKWTIQSLLKSILFRFIKIDEIDEIGENKKDSTISKNNPMIYESPVLIQSISWTN 2039
            +L ER+KW  ++LLK          +ID++ E+KK STISKNNP+I ESPV+IQSI+WTN
Sbjct: 982  VLNERKKW-FRTLLK----------KIDKLSESKKISTISKNNPIIEESPVIIQSINWTN 1030

Query: 2038 SCSL-TEKRIKDLNVKTKTIINEIEKMTKEKEGGVITSEKNLNPNKTTYDAKRLELQKNI 1862
            S    TEK IKDLNVKTKTII +IEKMT+EK+ G+ITSE NLN NKTTYDAKRLELQKNI
Sbjct: 1031 SSFTDTEKGIKDLNVKTKTIIKQIEKMTEEKKEGIITSEINLNLNKTTYDAKRLELQKNI 1090

Query: 1861 FQILQRRNVRLTRKLYSFFPFLMERVYIDIFLSIISIPRTKVQLFLEXXXXXXXXXXXXX 1682
             QILQRRNVRL RK YSFF F MERVY+DI L IISI R   Q FL+             
Sbjct: 1091 LQILQRRNVRLIRKSYSFFKFFMERVYMDILLYIISISRIHRQRFLDFLESTNKIVNVNK 1150

Query: 1681 XXN-----AERIDKTNQSIIPFMSIIHKSRRIRKTNSPNSYDVSSLSQAYVFFKLSQTQV 1517
              +      ER+ KTNQSIIPFMSII KS  I   NS NS DVSSLSQAYVFFKLSQ QV
Sbjct: 1151 SISNKKKNEERVYKTNQSIIPFMSIIDKSWNITNMNSQNSCDVSSLSQAYVFFKLSQIQV 1210

Query: 1516 INLNKYKLRSVFESHGRSFFLKNEIKNSFFRIQGISNSKLRHKNLPDSVMNQWKNWLKVH 1337
             N  KYKLRSVFESHGRSFFLKNEIK+SF RIQGI NSKLR KN PDS+MNQW NWLKVH
Sbjct: 1211 RNGYKYKLRSVFESHGRSFFLKNEIKDSFLRIQGILNSKLRQKNRPDSLMNQWTNWLKVH 1270

Query: 1336 HQYDLPQSRWSRLVPQNWRNRIHEHRVAQNKDLTEYDSYEKTPLILYKKEPIDVKDFLER 1157
            +QYDLPQSRWSRL  +NWRNR++EHR A+NKDL EYDSY KT LILYKK+   V D L+ 
Sbjct: 1271 YQYDLPQSRWSRLGARNWRNRMNEHR-AENKDLVEYDSYNKTQLILYKKQQEQV-DLLDL 1328

Query: 1156 NLXXXXXXXXKQNKYDLLSYKFLNYADKKESYIHG--SPFQANKKKAISYT---RTKEFF 992
             +        KQ +YDL SY+++NYADKK+SYI+G  SPFQANK +AI Y    R  E F
Sbjct: 1329 EI---KKKINKQYRYDLFSYQYINYADKKKSYIYGYRSPFQANKNQAIFYNYNIRKGELF 1385

Query: 991  D-----------RADAIIDMEKNLDRKYFDWMVINRKIPKPSVSNSS------------Y 881
            D             D IIDMEKN++RKYF+WM IN +  K S+ N              +
Sbjct: 1386 DIMGDISIQNYIAEDDIIDMEKNMNRKYFNWMGINVERKKNSIRNRKSEITESELPNPRF 1445

Query: 880  LYFLKLKRLYDAYKKNPWIMPIKSLFFQFYGNQK---------AEYASRVDLNSSFSNQE 728
             +F KL+ LYDAYKKNPWI+PI+  F QF GN+           +Y + VDL SS S   
Sbjct: 1446 WFFSKLRILYDAYKKNPWILPIEFFFLQFSGNENITDESKLEAKQYVNGVDLKSSGSKYF 1505

Query: 727  R------DIERLDNKKRAKSIERDFLVRKYLGFHLNYSTPLDEIMMNNIQLNYLLVGLQK 566
                   DI +  N  +    ERDFL+ KYLGF L+  + + E +MNN  L  LLV L+ 
Sbjct: 1506 NGSDVGYDINKYRNDLKG---ERDFLLEKYLGFGLHCESFVQESIMNNFNLFCLLVRLKN 1562

Query: 565  TKKIMIDSIKKGELNLESLVMFPNQKDFTL------NNELLEKEMFFREPVRLPRKNNEQ 404
             KK  I SIKKG+L++E + M+   KDF          +L +  MFF EPVRL  KN EQ
Sbjct: 1563 IKKFFIMSIKKGDLDMEDM-MYLTSKDFLSYKGCRDTEDLRDNLMFFIEPVRLSIKNYEQ 1621

Query: 403  FLMYQTISLSLNHKNLPQMFQRNPEKSR--------KDKNHYDLLVPENILSTRRRRELR 248
            F +YQT SLSL HK+  ++++RNPEKSR        KDKNHYDLLVPEN+LSTRRRRELR
Sbjct: 1622 FFIYQTTSLSLIHKSKHKIWKRNPEKSRVDQKITENKDKNHYDLLVPENLLSTRRRRELR 1681

Query: 247  ILLCFNPRNRNSV--------DKNKIFXXXXXXXXXXXXXXKCCQVLAKNKDLDREKKKL 92
            IL+CFN +NRN+V        +KNKI                 CQVLAKNKDLD E KKL
Sbjct: 1682 ILICFNSKNRNTVVHRNTKNDNKNKI--------------NNSCQVLAKNKDLDSETKKL 1727

Query: 91   MNLKFFLWPNYRLEDLACINRYWFDTHNGS 2
            MNLKFFLWPNYRLEDLACINRYWFDTHNGS
Sbjct: 1728 MNLKFFLWPNYRLEDLACINRYWFDTHNGS 1757


>ref|YP_009027078.1| hypothetical chloroplast RF19 [Trifolium grandiflorum]
            gi|514994754|gb|AGO63732.1| hypothetical chloroplast RF19
            [Trifolium grandiflorum]
          Length = 1760

 Score =  788 bits (2036), Expect = 0.0
 Identities = 465/806 (57%), Positives = 543/806 (67%), Gaps = 67/806 (8%)
 Frame = -1

Query: 2218 ILKERRKWTIQSLLKSILFRFIKIDEIDEIGENKKDSTISKNNPMIYESPVLIQSISWTN 2039
            +L ER+KW  ++LLK          +ID++ E+KK STISKNNP+I ESPV+IQSI+WTN
Sbjct: 973  VLNERKKW-FRTLLK----------KIDKLSESKKISTISKNNPIIEESPVIIQSINWTN 1021

Query: 2038 SCSL-TEKRIKDLNVKTKTIINEIEKMTKEKEGGVITSEKNLNPNKTTYDAKRLELQKNI 1862
            S    TEKRIKDLNVKTKTII +IEKMT++K+ G+ITSE NLN NKTTYDAKRLELQKNI
Sbjct: 1022 SSFTDTEKRIKDLNVKTKTIIKQIEKMTEKKKEGIITSEINLNLNKTTYDAKRLELQKNI 1081

Query: 1861 FQILQRRNVRLTRKLYSFFPFLMERVYIDIFLSIISIPRTKVQLFLEXXXXXXXXXXXXX 1682
             QIL+RRNVRL RK YSFF F +ERVYIDI L IISI R   Q FL+             
Sbjct: 1082 LQILERRNVRLIRKSYSFFKFFIERVYIDILLYIISISRIHRQRFLDFLESTNKIVNVDK 1141

Query: 1681 XXNA----ERIDKTNQSIIPFMSIIHKSRRIRKTNSPNSYDVSSLSQAYVFFKLSQTQVI 1514
              +     ERI KTNQSIIPFMSII KS  I    S NS DVSSLSQAYVFFKLSQ QV 
Sbjct: 1142 SISKKKNEERIYKTNQSIIPFMSIIDKSWNITNMKSQNSCDVSSLSQAYVFFKLSQIQVR 1201

Query: 1513 NLNKYKLRSVFESHGRSFFLKNEIKNSFFRIQGISNSKLRHKNLPDSVMNQWKNWLKVHH 1334
            N  KYKLRS+FESHGRSFFLKNEIK+ FF+IQGI NSKLR KN PDS+MNQW NWLKVH+
Sbjct: 1202 NGYKYKLRSIFESHGRSFFLKNEIKDYFFKIQGIFNSKLRQKNRPDSLMNQWTNWLKVHY 1261

Query: 1333 QYDLPQSRWSRLVPQNWRNRIHEHRVAQNKDLTEYDSYEKTPLILYKKEPIDVKDFLERN 1154
            QYDLPQSRWSRL  +NWRNRI+EH  A+NKDL EYDSY+KT LILYKK+ +   DFL   
Sbjct: 1262 QYDLPQSRWSRLGARNWRNRINEH-WAENKDLVEYDSYDKTQLILYKKKQV---DFL--- 1314

Query: 1153 LXXXXXXXXKQNKYDLLSYKFLNYADKKESYIHG--SPFQANKKKAISYT---RTKEFFD 989
            +        KQ +YDL SY+++NYADKK+SYI+G  SPFQANK +AISY    R  E FD
Sbjct: 1315 VLEIKKKINKQYRYDLFSYQYINYADKKKSYIYGYRSPFQANKNRAISYNYNIRKGELFD 1374

Query: 988  -----------RADAIIDMEKNLDRKYFDWMVINRKIPKPSVSNSS------------YL 878
                         D II+MEKNL+RKYF+WM IN +  K S+ N              + 
Sbjct: 1375 IMGDISIQNYIAEDNIINMEKNLNRKYFNWMGINVERKKNSIRNPKSEITEYELAKPRFW 1434

Query: 877  YFLKLKRLYDAYKKNPWIMPIKSLFFQFYGNQK---------AEYASRVDLNSSFSN--Q 731
            +F KL+ LYDAYKKNPWI+PI+  F QF GN+           +Y S VDL SS S    
Sbjct: 1435 FFSKLRILYDAYKKNPWILPIEFFFLQFSGNENITDESKLEAKQYVSGVDLKSSGSKYFH 1494

Query: 730  ERDIERLDNKKRAK-SIERDFLVRKYLGFHLNYSTPLDEIMMNNIQLNYLLVGLQKTKKI 554
              D+    NK R     ERDFL+ KYLGF L+  + + E +MNN  L  LLV L+  KK 
Sbjct: 1495 GSDVGYYINKYRNDLKGERDFLLEKYLGFGLHCESFVQESIMNNFNLFCLLVRLKNIKKF 1554

Query: 553  MIDSIKKGELNLESLVMFPNQKDFTL------NNELLEKEMFFREPVRLPRKNNEQFLMY 392
             I SIKKG+L++E + M+   KDF          +L +  MFF EP+RL  KN E F +Y
Sbjct: 1555 FIMSIKKGDLDMEDM-MYLTSKDFRSYKGCRDTEDLRDNLMFFIEPIRLSIKNYEPFFIY 1613

Query: 391  QTISLSLNHKNLPQMFQRNPEKSRKD--------KNHYDLLVPENILSTRRRRELRILLC 236
            QT SLSL HK+  ++++RNPEK R D        KNHYDLLVPEN+LSTRRRRELRIL+C
Sbjct: 1614 QTTSLSLIHKSKREIWKRNPEKGRVDQKITENKYKNHYDLLVPENLLSTRRRRELRILIC 1673

Query: 235  FNPRNRNSV--------DKNKIFXXXXXXXXXXXXXXKCCQVLAKNKDLDREKKKLMNLK 80
            FN +NRN+V        ++NKI                 CQVLAKNKDLD E KKLMNLK
Sbjct: 1674 FNSKNRNTVVHRNTKNHNENKI--------------NNSCQVLAKNKDLDSETKKLMNLK 1719

Query: 79   FFLWPNYRLEDLACINRYWFDTHNGS 2
            FFLWPNYRLEDLACINRYWFDTHNGS
Sbjct: 1720 FFLWPNYRLEDLACINRYWFDTHNGS 1745


>ref|YP_009109817.1| hypothetical chloroplast RF19 (chloroplast) [Trifolium boissieri]
            gi|672425016|gb|AIJ27857.1| hypothetical chloroplast RF19
            (chloroplast) [Trifolium boissieri]
          Length = 1768

 Score =  782 bits (2019), Expect = 0.0
 Identities = 464/801 (57%), Positives = 540/801 (67%), Gaps = 62/801 (7%)
 Frame = -1

Query: 2218 ILKERRKWTIQSLLKSILFRFIKIDEIDEIGENKKDSTISKNNPMIYESPVLIQSISWTN 2039
            +L ER+KW  ++LLK          +ID++ E+KK STISKNNP+I ESPV+IQSI+WTN
Sbjct: 979  VLNERKKW-FRTLLK----------KIDKLSESKKISTISKNNPIIEESPVIIQSINWTN 1027

Query: 2038 SCSL-TEKRIKDLNVKTKTIINEIEKMTKEKEGGVITSEKNLNPNKTTYDAKRLELQKNI 1862
            S    TEKRIKDLNVKTKTII +IEKMT++K+ G+ITSE NLN NKTTYDAKRLELQKNI
Sbjct: 1028 SSFTDTEKRIKDLNVKTKTIIKQIEKMTEKKKEGIITSEINLNLNKTTYDAKRLELQKNI 1087

Query: 1861 FQILQRRNVRLTRKLYSFFPFLMERVYIDIFLSIISIPRTKVQLFLEXXXXXXXXXXXXX 1682
            FQIL+RRNVRL RK YSFF F +ERVYIDI L IISI R   Q FL+             
Sbjct: 1088 FQILERRNVRLIRKSYSFFKFFIERVYIDILLYIISISRIHRQRFLDFLESTNKIVNVDK 1147

Query: 1681 XXNA----ERIDKTNQSIIPFMSIIHKSRRIRKTNSPNSYDVSSLSQAYVFFKLSQTQVI 1514
              +     ERI KTNQSIIPFMSII KS  I    S NS DVSSLSQAYVFFKLSQ QV 
Sbjct: 1148 SISKKKNEERIYKTNQSIIPFMSIIDKSWNITNMKSQNSCDVSSLSQAYVFFKLSQIQVR 1207

Query: 1513 NLNKYKLRSVFESHGRSFFLKNEIKNSFFRIQGISNSKLRHKNLPDSVMNQWKNWLKVHH 1334
            N  KYKLRS+FESHGRSFFLKNEIK+ F +IQGI NSKLR KN PDS+MNQW NWLKVH+
Sbjct: 1208 NGYKYKLRSIFESHGRSFFLKNEIKDYFLKIQGIFNSKLRQKNRPDSLMNQWTNWLKVHY 1267

Query: 1333 QYDLPQSRWSRLVPQNWRNRIHEHRVAQNKDLTEYDSYEKTPLILYKKEPIDVKDFLERN 1154
            QYDLPQSRWSRL  +NWRNRI+EH  A+NKDL EYDSY+KT LILYKK+ +   DFL   
Sbjct: 1268 QYDLPQSRWSRLGARNWRNRINEH-WAENKDLVEYDSYDKTQLILYKKKQV---DFL--- 1320

Query: 1153 LXXXXXXXXKQNKYDLLSYKFLNYADKKESYIHG--SPFQANKKKAISYT---RTKEFFD 989
            +        KQ +YDL SY+++NYADKK+SYI+G  SPFQANK +AISY    R  E FD
Sbjct: 1321 VLEIKKKINKQYRYDLFSYQYINYADKKKSYIYGYRSPFQANKNRAISYNYNIRKGELFD 1380

Query: 988  -----------RADAIIDMEKNLDRKYFDWMVINRKIPKPSVSNSS------------YL 878
                         D II+MEKNL+RKYF+WM IN +  K S+ N              + 
Sbjct: 1381 IMGDISIQNYIAEDNIINMEKNLNRKYFNWMGINVERKKNSIRNPKSEITEYELAKPRFW 1440

Query: 877  YFLKLKRLYDAYKKNPWIMPIKSLFFQFYGNQK---------AEYASRVDLNSSFSN--Q 731
            +F KL+ LYDAYKKNPWI+PI+  F QF GN+           +Y S VDL SS S    
Sbjct: 1441 FFSKLRILYDAYKKNPWILPIEFFFLQFSGNENITDESKLEAKQYVSGVDLKSSGSKYFH 1500

Query: 730  ERDIERLDNKKRAK-SIERDFLVRKYLGFHLNYSTPLDEIMMNNIQLNYLLVGLQKTKKI 554
              D+    NK R     ERDFL+ KYLGF L+  + + E +MNN  L  LLV L+  KK 
Sbjct: 1501 GSDVGYSINKYRNDLKGERDFLLEKYLGFGLHCESFVQESIMNNFNLFCLLVRLKNIKKF 1560

Query: 553  MIDSIKKGELNLESLVMFPNQKDFTL------NNELLEKEMFFREPVRLPRKNNEQFLMY 392
             I SIKKG+L++E + M+   KDF          +L +  MFF EP+RL  KN E F +Y
Sbjct: 1561 FIMSIKKGDLDMEDM-MYLTSKDFRSYKGCRDTEDLRDNLMFFIEPIRLSIKNYEPFFIY 1619

Query: 391  QTISLSLNHKNLPQMFQRNPEKSRKD--------KNH--YDLLVPENILSTRRRRELRIL 242
            QT SLSL HK+  ++++RNPEK R D        KNH  YDLLVPEN+LSTRRRRELRIL
Sbjct: 1620 QTTSLSLIHKSKREIWKRNPEKGRVDQKITENKYKNHYDYDLLVPENLLSTRRRRELRIL 1679

Query: 241  LCFNPRNRNS-VDKNKIFXXXXXXXXXXXXXXKCCQVLAKNKDLDREKKKLMNLKFFLWP 65
            +CFN +NRN+ V KN                   CQVLAKNKDLD E KKLMNLKFFLWP
Sbjct: 1680 ICFNSKNRNTVVHKN-------TKNHNEHKINNYCQVLAKNKDLDSETKKLMNLKFFLWP 1732

Query: 64   NYRLEDLACINRYWFDTHNGS 2
            NYRLEDLACINRYWFDTHNGS
Sbjct: 1733 NYRLEDLACINRYWFDTHNGS 1753


>gb|AIJ28079.1| hypothetical chloroplast RF19 (chloroplast) [Trifolium lupinaster]
          Length = 1815

 Score =  738 bits (1904), Expect = 0.0
 Identities = 450/835 (53%), Positives = 539/835 (64%), Gaps = 95/835 (11%)
 Frame = -1

Query: 2221 TILKERRKWTIQSLLKSILFRFIKIDEIDEIGENKKDSTISKNNPMIYESPVLIQSISWT 2042
            T+L E   W I+SLL    F F KID++ E   +KK STISKNNP+I ESPV+IQSI+WT
Sbjct: 995  TMLNEIENWNIESLL----FGFKKIDKLSE---SKKISTISKNNPIIEESPVIIQSINWT 1047

Query: 2041 NSCSLTEKRIKDLNVKTKTIINEIEKMTKEKEGGVITSEKNLNPNKTTYDAKRLELQKNI 1862
            NS S TEKRIKDLNVKTKTII +IEKMT+EK+ G+ITSE NLN NKTTYDAKRLELQK I
Sbjct: 1048 NS-SFTEKRIKDLNVKTKTIIKQIEKMTEEKKDGIITSEINLNSNKTTYDAKRLELQKKI 1106

Query: 1861 FQILQRRNVRLTRKLYSFFPFLMERVYIDIFLSIISIPRTKVQLFLEXXXXXXXXXXXXX 1682
             Q L+RR+VRL RK YSFF   MERVYIDI L IISIPR   Q F++             
Sbjct: 1107 LQ-LKRRSVRLIRKSYSFFKIFMERVYIDILLCIISIPRIHGQHFVDFLLDFLESTNKIV 1165

Query: 1681 XXNA---------ERIDKTNQSIIPFMSIIHKSRRIRKTNSPNSYDVSSLSQAYVFFKLS 1529
              N          ERIDKTNQSIIPFMSII KS  I   NS NS DVSSLSQAYV FKLS
Sbjct: 1166 NVNKSISKKKQNEERIDKTNQSIIPFMSIIDKSWNITNMNSKNSCDVSSLSQAYVLFKLS 1225

Query: 1528 QTQVINLNKYKLRSVFESHGRSFFLKNEIKNSFFRIQGISNSKLRHKNLPDSVMNQWKNW 1349
            Q QV N  KYKLRS+FESHGRSFFLKNEIK+ F RIQGI NSKLRHKN PDS+M QW NW
Sbjct: 1226 QIQVRNGYKYKLRSIFESHGRSFFLKNEIKDYFLRIQGI-NSKLRHKNRPDSLMKQWTNW 1284

Query: 1348 LKVHHQYDLPQSRWSRLVPQNWRNRIHEHRVAQNKDLTEYDSYEKTPLILYKKEPIDVKD 1169
            LKVH+QYDLPQS WSRL+PQNWRNRI+EHRVAQNKDL EYDSYEKT LILYKKE   + +
Sbjct: 1285 LKVHYQYDLPQSTWSRLLPQNWRNRINEHRVAQNKDLGEYDSYEKTQLILYKKEQEQI-E 1343

Query: 1168 FLERNLXXXXXXXXKQNKYDLLSYKFLNYADKKESYIHG--SPFQANKKKAISY---TRT 1004
             LER          KQ +YDL SY+ +NYADKK+SYI+G  SPFQANK +AISY   T  
Sbjct: 1344 LLERK-----KKIKKQYRYDLFSYQHINYADKKKSYIYGYRSPFQANKNQAISYNYNTCK 1398

Query: 1003 KEFFD------RADAIID-MEKNLDRKYFDWMVINRK-----IPKPSVSNSSYLYFLKLK 860
            KE  D        + I D  EKNL+RKYF+WM +N K     IP P + NS + +F KL+
Sbjct: 1399 KELLDIIVGSSIQNYIADYSEKNLNRKYFNWMGMNVKRKKNSIPNPQLLNSRFWFFSKLR 1458

Query: 859  RLYDAYKKNPWIM-PIKSLFFQFYG--NQKAEYAS------------------------- 764
             L+DAY+K+P+++ P+ SLF    G  +QK E  +                         
Sbjct: 1459 ILFDAYRKDPFVISPVYSLFSGNDGITDQKIELVNARTVPKEEVKMPKEEVKMSKEEVKM 1518

Query: 763  ---------------RVDLNSSFSNQE------RDIERLD-----NKKRAKSI--ERDFL 668
                           + +L   F + +      +D  R D     NK+   ++  ERDFL
Sbjct: 1519 PKEEVKKSKEEVKMPKKELKIKFKSSKYYRAATKDYNRNDDINDINKQYRINVKRERDFL 1578

Query: 667  VRKYLGFHLNYSTPLDEIMMNNIQLNYLLVGLQKTKKIMIDSIKKGELNLESLVMFPNQK 488
            + +Y+G +LN    + E ++NNI +  LL+ L+K K  +I SIKKG+L+++  + +   K
Sbjct: 1579 LERYVGVYLNCDNSVQETILNNINILLLLLKLKKLKNFVITSIKKGDLDMD-YITYLTSK 1637

Query: 487  DFTL-----NNELLEKEMFFREPVRLPRKNNEQFLMYQTISLSLNHKNLPQMFQRNPEKS 323
            DF+        EL    +FF EP+R+ RKN E+F +Y+TI++ L  K      +  PEKS
Sbjct: 1638 DFSYTECRDTEELRPNLVFFIEPIRISRKNYEEFFIYKTITVLLKKKG-----EFWPEKS 1692

Query: 322  R--------KDKNHYDLLVPENILSTRRRRELRILLCFNPRNRNSVDKNKIFXXXXXXXX 167
            R        KDKNH DLLVPEN+LSTRRRRELRI++C +P+NRN+  +N           
Sbjct: 1693 RVDQQITENKDKNHSDLLVPENLLSTRRRRELRIIICLDPKNRNTAHRN-------TRND 1745

Query: 166  XXXXXXKCCQVLAKNKDLDREKKKLMNLKFFLWPNYRLEDLACINRYWFDTHNGS 2
                    CQVLAKNKDLD E KKLMNLKFFLWPNYRLEDLACINRYWFDTHNGS
Sbjct: 1746 DENKINNSCQVLAKNKDLDSETKKLMNLKFFLWPNYRLEDLACINRYWFDTHNGS 1800


>ref|YP_009109892.1| hypothetical chloroplast RF19 (chloroplast) [Trifolium glanduliferum]
            gi|672425091|gb|AIJ27931.1| hypothetical chloroplast RF19
            (chloroplast) [Trifolium glanduliferum]
          Length = 1826

 Score =  727 bits (1877), Expect = 0.0
 Identities = 437/834 (52%), Positives = 526/834 (63%), Gaps = 94/834 (11%)
 Frame = -1

Query: 2221 TILKERRKWTIQSLLKSILFRFIKIDEIDEIGENKKDSTISKNNPMIYESPVLIQSISWT 2042
            T+LKE   W I    KSILF F KID++ E   +KK STISKNNP+I ESPV+IQSI+WT
Sbjct: 1007 TMLKEIENWNI----KSILFGFQKIDKLSE---SKKISTISKNNPIIEESPVIIQSINWT 1059

Query: 2041 NSCSLTEKRIKDLNVKTKTIINEIEKMTKEKEGGVITSEKNLNPNKTTYDAKRLELQKNI 1862
            NS S TEKRIKDLNVKTK II +IEKMT+EK+ G+ITSE NLN NKTTYDAK LELQKNI
Sbjct: 1060 NS-SFTEKRIKDLNVKTKIIIKQIEKMTEEKKEGIITSEINLNSNKTTYDAKILELQKNI 1118

Query: 1861 FQILQRRNVRLTRKLYSFFPFLMERVYIDIFLSIISIPRTKVQLFLEXXXXXXXXXXXXX 1682
             Q LQRRNVRL RK YSFF   +ERVYIDI L II I R   Q FL+             
Sbjct: 1119 LQ-LQRRNVRLIRKSYSFFKIFIERVYIDILLCIIRIARIHGQRFLDFLESTNKIVNVNK 1177

Query: 1681 XXNA----ERIDKTNQSIIPFMSIIHKSRRIRKTNSPNSYDVSSLSQAYVFFKLSQTQVI 1514
              +     ERIDKTNQSIIPFMSII KS  I   NS NS DVSSLSQAYVFFKLSQ QV 
Sbjct: 1178 SISKKKNEERIDKTNQSIIPFMSIIDKSWNITNMNSQNSCDVSSLSQAYVFFKLSQIQVR 1237

Query: 1513 NLNKYKLRSVFESHGRSFFLKNEIKNSFFRIQGISNSKLRHKNLPDSVMNQWKNWLKVHH 1334
               +YKLRS+F+SH RSFFLKNEIK+ F RIQGI NSKLRHKN PDS+MNQW NWLKVH+
Sbjct: 1238 YGYRYKLRSLFQSHERSFFLKNEIKDYFLRIQGIFNSKLRHKNRPDSLMNQWTNWLKVHY 1297

Query: 1333 QYDLPQSRWSRLVPQNWRNRIHEHRVAQNKDLTEYDSYEKTPLILYKKEPIDVKDFLERN 1154
            QYDLP+S WSRL+ QNWRNRI+EHRVAQNKDL EYDSY+KT LILYKKE   V D LE  
Sbjct: 1298 QYDLPESTWSRLLSQNWRNRINEHRVAQNKDLVEYDSYDKTQLILYKKEQEQV-DLLE-- 1354

Query: 1153 LXXXXXXXXKQNKYDLLSYKFLNYADKKESYIHG--SPFQANKKKAISYTRTKEFFDRAD 980
                     KQ +YDL SY+ +NYADKK+SYI+G  SPFQANK +AISY       +  D
Sbjct: 1355 ---IKKKIKKQYRYDLFSYQHINYADKKKSYIYGYRSPFQANKNQAISYNYNTCNGELLD 1411

Query: 979  AIID-----------MEKNLDRKYFDWMVIN-----RKIPKPSVSNSSYLYFLKLKRLYD 848
             I+D           +EKNL+R+YF+WM +N       IP P   NS + +F KL+ L+ 
Sbjct: 1412 IIVDSSIQKYLAKDSLEKNLNRRYFNWMKMNVERKKNSIPNPQFLNSGFWFFSKLRILFH 1471

Query: 847  AYKKNPWIMPIKSLFFQFYGNQKAE----YASRVDLNSSFSNQER--------------- 725
            AY+KNP I    ++ F FY N K +       ++  + S +++ +               
Sbjct: 1472 AYRKNPSIF---AMDFPFYENDKLKTHKIKTHKIKTDESKTDESKTDESKTDKIKTDKTK 1528

Query: 724  -----------DIERLDNKKRAKSI-----------------------------ERDFLV 665
                       D  + D  K  +++                             ERDFL+
Sbjct: 1529 TDEIKTDKTKTDKTKTDENKNGRTVPIEKLKFYRSKATKRFNSPKNKYRTNTRVERDFLL 1588

Query: 664  RKYLGFHLNYSTPLDEIMMNNIQLNYLLVGLQKTKKIMIDSIKKGELNLESLVMFPNQKD 485
             +Y+GF+LN    + E +MNN  +  LL+ L+K K+ +I SIKKG+L++E++  +   K+
Sbjct: 1589 GRYVGFYLNCDKYVQETIMNNFNVLCLLIKLKKLKQFVITSIKKGDLDIENMT-YLTSKN 1647

Query: 484  FTLNN-----ELLEKEMFFREPVRLPRKNNEQFLMYQTISLSLNHKNLPQMFQRNPEKSR 320
            F+        EL +  MFF EP R+  KN E+  +YQT ++SL        ++  PEKSR
Sbjct: 1648 FSYTECRDTVELRDYLMFFIEPSRISIKNYEELFIYQTTTVSLKR---TWKWKYWPEKSR 1704

Query: 319  --------KDKNHYDLLVPENILSTRRRRELRILLCFNPRNRNSVDKNKIFXXXXXXXXX 164
                    KDKNH DLLVPEN+LSTRRRRELRIL+CF+P+NRN+  +N            
Sbjct: 1705 VDQKITENKDKNHSDLLVPENLLSTRRRRELRILICFDPKNRNTAHRN-------TRNDN 1757

Query: 163  XXXXXKCCQVLAKNKDLDREKKKLMNLKFFLWPNYRLEDLACINRYWFDTHNGS 2
                   CQVL KNKDLD E KKLMNLKFFLWPNYRLEDLACINRYWFDTHNGS
Sbjct: 1758 ENKINNSCQVLGKNKDLDSETKKLMNLKFFLWPNYRLEDLACINRYWFDTHNGS 1811


>ref|YP_009109967.1| hypothetical chloroplast RF19 (chloroplast) [Trifolium strictum]
            gi|672425600|gb|AIJ28433.1| hypothetical chloroplast RF19
            (chloroplast) [Trifolium strictum]
          Length = 1835

 Score =  723 bits (1867), Expect = 0.0
 Identities = 439/831 (52%), Positives = 522/831 (62%), Gaps = 91/831 (10%)
 Frame = -1

Query: 2221 TILKERRKWTIQSLLKSILFRFIKIDEIDEIGENKKDSTISKNNPMIYESPVLIQSISWT 2042
            T+LKE   W I    KSILF F KID++ E   +KK STISKNNP+I ESPV+IQSI+WT
Sbjct: 1020 TMLKEIENWNI----KSILFGFQKIDKLSE---SKKISTISKNNPIIEESPVIIQSINWT 1072

Query: 2041 NSCSLTEKRIKDLNVKTKTIINEIEKMTKEKEGGVITSEKNLNPNKTTYDAKRLELQKNI 1862
            NS S TEKRIKDLNVKTKTII +IEKMT+EK+ G+ITSE NLN NKTTYDAK LELQKNI
Sbjct: 1073 NS-SFTEKRIKDLNVKTKTIIKQIEKMTEEKKEGIITSEINLNSNKTTYDAKILELQKNI 1131

Query: 1861 FQILQRRNVRLTRKLYSFFPFLMERVYIDIFLSIISIPRTKVQLFLEXXXXXXXXXXXXX 1682
             Q LQRRNVRL RK YSFF   +ERVYIDI L II I R   Q FL+             
Sbjct: 1132 LQ-LQRRNVRLIRKSYSFFKIFIERVYIDILLCIIRIARIHGQRFLDFLESTNKIVNVNK 1190

Query: 1681 XXNA-----ERIDKTNQSIIPFMSIIHKSRRIRKTNSPNSYDVSSLSQAYVFFKLSQTQV 1517
              +      ERIDKTNQSIIPFMSII KS  I   NS NS DVSSLSQAYVFFKLSQ QV
Sbjct: 1191 SISKKKKNEERIDKTNQSIIPFMSIIDKSWNITNMNSQNSCDVSSLSQAYVFFKLSQIQV 1250

Query: 1516 INLNKYKLRSVFESHGRSFFLKNEIKNSFFRIQGISNSKLRHKNLPDSVMNQWKNWLKVH 1337
                +YKLRS+F+SH RSFFLKNEIK+ F RIQGI NSKLRHKN PDS+MNQW NWLKVH
Sbjct: 1251 RYGYRYKLRSLFQSHERSFFLKNEIKDYFLRIQGIFNSKLRHKNRPDSLMNQWTNWLKVH 1310

Query: 1336 HQYDLPQSRWSRLVPQNWRNRIHEHRVAQNKDLTEYDSYEKTPLILYKKEPIDVKDFLER 1157
            +QYDLP+S WSRL+ QNWRNRI+EHRVAQNKDL EYDSY+KT LILYKKE   V D LE 
Sbjct: 1311 YQYDLPESTWSRLLSQNWRNRINEHRVAQNKDLVEYDSYDKTQLILYKKEQEQV-DLLE- 1368

Query: 1156 NLXXXXXXXXKQNKYDLLSYKFLNYADKKESYIHG--SPFQANKKKAISYTRTKEFFDRA 983
                      KQ  YDL SY+ +NYADKK+SYI+G  SPFQANK +AISY       +  
Sbjct: 1369 ----IKKKIKKQYIYDLFSYQHINYADKKKSYIYGYRSPFQANKNQAISYNYNTCNGELL 1424

Query: 982  DAIID-----------MEKNLDRKYFDWMVIN-----RKIPKPSVSNSSYLYFLKLKRLY 851
            D I+D           +EKNL+R+YF+WM +N       IP P   NS + +F KL+ L+
Sbjct: 1425 DIIVDSSIQKYLAKDSLEKNLNRRYFNWMKMNVERKKNSIPNPQFLNSGFWFFSKLRILF 1484

Query: 850  DAYKKNPWIMPIKSLFFQFYGNQKAEY------ASRVDLNSSFSNQERDIERLDNKKRAK 689
             AY+KNP I    ++ F FY N + +        S+ D  S     + D  + D  K  K
Sbjct: 1485 HAYRKNPSIF---AMDFPFYENDELKTHKIKTDKSKTD-ESKTDESKTDESKTDEIKTDK 1540

Query: 688  S-------------------------------------------------IERDFLVRKY 656
            S                                                 +ERDFL+ +Y
Sbjct: 1541 SKTDKSKTDKTKTDESKNGRTVPIEKLKFYRSKATKRFDSPKKKYRTNTRVERDFLLGRY 1600

Query: 655  LGFHLNYSTPLDEIMMNNIQLNYLLVGLQKTKKIMIDSIKKGELNLESLVMFPNQKDFTL 476
            +GF+LN    + E +MNN  +  LL+ L+K K+ +I SIKKG+L++E++  +   K+F+ 
Sbjct: 1601 VGFYLNCDKYVQETIMNNFNVLCLLIKLKKLKQFVITSIKKGDLDIENMT-YLTSKNFSY 1659

Query: 475  NN-----ELLEKEMFFREPVRLPRKNNEQFLMYQTISLSLNHKNLPQMFQRNPEKSR--- 320
                   EL +  MFF EP R+  KN E+  +YQT ++SL        ++  PEKSR   
Sbjct: 1660 TECRDTVELRDYLMFFIEPSRISIKNYEELFIYQTTTVSLKR---TWKWKYWPEKSRVDQ 1716

Query: 319  -----KDKNHYDLLVPENILSTRRRRELRILLCFNPRNRNSVDKNKIFXXXXXXXXXXXX 155
                 KDKN+ DLLVPEN+LSTRRRRELRIL+CF+P+NRN+  +N               
Sbjct: 1717 KITENKDKNNSDLLVPENLLSTRRRRELRILICFDPKNRNTAHRN-------TRNDNENK 1769

Query: 154  XXKCCQVLAKNKDLDREKKKLMNLKFFLWPNYRLEDLACINRYWFDTHNGS 2
                CQV  KNKDLD E KKLMNLKFFLWPNYRLEDLACINRYWFDTHNGS
Sbjct: 1770 INNSCQVWGKNKDLDSETKKLMNLKFFLWPNYRLEDLACINRYWFDTHNGS 1820


>ref|YP_009046865.1| hypothetical chloroplast RF19 (chloroplast) [Trifolium subterraneum]
            gi|659676653|gb|AID67350.1| hypothetical chloroplast RF19
            (chloroplast) [Trifolium subterraneum]
          Length = 1786

 Score =  714 bits (1842), Expect = 0.0
 Identities = 426/810 (52%), Positives = 521/810 (64%), Gaps = 70/810 (8%)
 Frame = -1

Query: 2221 TILKERRKWTIQSLLKSILFRFIKIDEIDEIGENKKDSTISKNNPMIYESPVLIQSISWT 2042
            T+L E   W I+SLL    F F KID++ E   +KK S ISKNNP+I ESPV+I+SI+WT
Sbjct: 1003 TMLNEIENWNIESLL----FGFKKIDKLSE---SKKISPISKNNPIIEESPVIIESINWT 1055

Query: 2041 NSCSLTEKRIKDLNVKTKTIINEIEKMTKEKEGGVITSEKNLNPNKTTYDAKRLELQKNI 1862
            NS S TEKRIKDLNVKTKTI  +IEKMT+EK+ G+ITSE NLN NKTTY+AK LELQKNI
Sbjct: 1056 NS-SFTEKRIKDLNVKTKTIRKQIEKMTEEKKEGIITSEINLNSNKTTYEAKILELQKNI 1114

Query: 1861 FQILQRRNVRLTRKLYSFFPFLMERVYIDIFLSIISIPRTKVQLFLEXXXXXXXXXXXXX 1682
             Q LQRRN+RL RK YSFF   MERVYIDI L I S  R   Q F++             
Sbjct: 1115 LQ-LQRRNIRLIRKSYSFFKIFMERVYIDILLCISSNTRIHGQRFVDFLLDFLLDFLESR 1173

Query: 1681 XXNA----------ERIDKTNQSIIPFMSIIHKSRRIRKTNSPNSYDVSSLSQAYVFFKL 1532
                          ERI+KTNQSIIPFMSII KS  I   NS NSYDVSSLSQAYV FKL
Sbjct: 1174 NKIVNKSISKKKNEERINKTNQSIIPFMSIIDKSWNITNMNSKNSYDVSSLSQAYVLFKL 1233

Query: 1531 SQTQVINLNKYKLRSVFESHGRSFFLKNEIKNSFFRIQGISNSKLRHKNLPDSVMNQWKN 1352
            SQ QV N  KYKLRS+FESHGRSFFLK EIK+ F +IQGI NSKLRHKN PDS+MNQW N
Sbjct: 1234 SQMQVRNGYKYKLRSIFESHGRSFFLKKEIKDYFLKIQGI-NSKLRHKNRPDSLMNQWTN 1292

Query: 1351 WLKVHHQYDLPQSRWSRLVPQNWRNRIHEHRVAQNKDLTEYDSYEKTPLILYKKEPIDVK 1172
            WLKVH+QYDLP+S WSRL+ QNWRNRI+EHRV QNKDL EYDS EKT LILYKKE    K
Sbjct: 1293 WLKVHYQYDLPRSTWSRLLAQNWRNRINEHRVGQNKDLVEYDSTEKTQLILYKKEQEQEK 1352

Query: 1171 -DFLERNLXXXXXXXXKQNKYDLLSYKFLNYADKKESYIHG--SPFQANKKKAISYTRTK 1001
             + LER          KQ +YDL SY+ +NYADKK+SYI+G  SPF+ANK +AI Y   +
Sbjct: 1353 VELLERK-----KKIQKQYRYDLFSYQHINYADKKKSYIYGYRSPFRANKNQAIYYNYNR 1407

Query: 1000 EFFDRADAII-------DMEKNLDRKYFDWMVIN-----RKIPKPSVSNSSYLYFLKLKR 857
            E  D +           DMEKNL+RKYF+WM +N       IP P + NS + +F KL+ 
Sbjct: 1408 ELLDISVGSSIQNYLAGDMEKNLNRKYFNWMGMNVERKKNSIPNPQLLNSRFWFFSKLRI 1467

Query: 856  LYDAYKKNPWIMPIKSLFFQFYGNQKAEYASRV--------------DLNSSFSNQERDI 719
            L++ YK+NP+   I S++  F GN++  Y +++              D+    SN+E  I
Sbjct: 1468 LFEKYKENPFY--ISSMYRLFSGNERITYENKLLNARPKEGLKTTPKDIKGPTSNKELKI 1525

Query: 718  ERLDNK--------KRAKSI----------ERDFLVRKYLGFHLNYSTPLDEIMMNNIQL 593
            +   +K         R   I          ERDFL+ +Y+G +L+    + E ++NN  +
Sbjct: 1526 KFKSSKYYQPVSYHSRMNKIHKKYRTNLKRERDFLLERYVGVYLDCDISVQETLLNNSNI 1585

Query: 592  NYLLVGLQKTKKIMIDSIKKGELNLESLVMFPNQKDFTL-----NNELLEKEMFFREPVR 428
              LL+ +++ KK +I SIKKG+L+++ L      +DF+       NEL    +FF EP+R
Sbjct: 1586 FLLLLKMKRLKKFVITSIKKGDLDMDYLTQV-TSRDFSYTECRDTNELKNNLVFFIEPIR 1644

Query: 427  LPRKNNEQFLMYQTISLSLNHKNLPQMFQRNPEKSR--------KDKNHYDLLVPENILS 272
            + RKN E+F +Y+T ++ L  K+     +  PEKSR        KDKNH DLLVPEN+LS
Sbjct: 1645 ISRKNYEEFFIYKTTTVLLKKKD-----KFWPEKSRVDQQITEKKDKNHSDLLVPENLLS 1699

Query: 271  TRRRRELRILLCFNPRNRNSVDKNKIFXXXXXXXXXXXXXXKCCQVLAKNKDLDREKKKL 92
            TRRRRELRIL+C +P +RN+  +N                    QVLAKNKDLD E KKL
Sbjct: 1700 TRRRRELRILICLDPPSRNTGPRN-----------------TRNQVLAKNKDLDSETKKL 1742

Query: 91   MNLKFFLWPNYRLEDLACINRYWFDTHNGS 2
            MN KFFLWPNYRLEDLACINRYWFDTHNG+
Sbjct: 1743 MNFKFFLWPNYRLEDLACINRYWFDTHNGT 1772


>ref|YP_009141654.1| hypothetical chloroplast RF19 (chloroplast) [Medicago hybrida]
            gi|675298560|gb|AIL56179.1| hypothetical chloroplast RF19
            (chloroplast) [Medicago hybrida]
          Length = 1752

 Score =  708 bits (1828), Expect = 0.0
 Identities = 437/792 (55%), Positives = 515/792 (65%), Gaps = 52/792 (6%)
 Frame = -1

Query: 2221 TILKERRKWTIQSLLKSILFRFIKIDE-IDEIGENKKDSTISKNNP---MIYESPVLIQS 2054
            T+LK+   W I   LKSIL RF  IDE +DE+ E+KK STISKNN    +I ESPV ++S
Sbjct: 969  TMLKKIENWKI---LKSILVRFKTIDETVDELSESKKTSTISKNNSKIEVIEESPVKMES 1025

Query: 2053 ISWTNSCSLTEKRIKDLNVKTKTIINEIEKMTKEKEGGVITSEKNLNPNKTTYDAKRLEL 1874
            I+WTNS S TEKRIKDLNVKTKTII +IE MT+EK+ G++TSE NLN NKTTYDAKRLEL
Sbjct: 1026 INWTNS-SFTEKRIKDLNVKTKTIIKQIETMTEEKKEGILTSEINLNSNKTTYDAKRLEL 1084

Query: 1873 QKNIFQILQRRNVRLTRKLYSFFPFLMERVYIDIFLSIISIPRTKVQLFLEXXXXXXXXX 1694
            QKNI QILQRR VRL RK YSFF   +E VYIDI L I SI R   Q FL+         
Sbjct: 1085 QKNILQILQRRFVRLIRKSYSFFKIFIEGVYIDILLCISSIARIHRQRFLDFLESTDKIL 1144

Query: 1693 XXXXXXN------AERIDKTNQSIIPFMSIIHKSRRIRKTNSPNSYDVSSLSQAYVFFKL 1532
                          ERI+  NQSIIP MSII KS  I   NS NS+DVSSLSQ YV +KL
Sbjct: 1145 NVKKSIYYKKKKMEERIE--NQSIIP-MSIIDKSVNITNMNSQNSWDVSSLSQLYVLYKL 1201

Query: 1531 SQTQVINLNKYKLRSVFESHGRSFFLKNEIKNSFFRIQGISNSKLRHKNLPDSVMNQWKN 1352
            SQ QV N  K+KLRS+FES GRSFFLKNEIK+ FFRIQG SNSKLRH   PDS+MNQW N
Sbjct: 1202 SQIQVSNGYKFKLRSIFESPGRSFFLKNEIKDYFFRIQGTSNSKLRHTKRPDSLMNQWTN 1261

Query: 1351 WLKVHHQYDLPQSRWSRLVPQNWRNRIHEHRVAQNKDLTEYDSYEKTPLILYKKEPIDVK 1172
            WLK+H+QYDLP++RWSRLV QNWRNRI+EHRVAQ KDL EYDSYEK  LIL KK+  +  
Sbjct: 1262 WLKLHYQYDLPENRWSRLVSQNWRNRINEHRVAQKKDLVEYDSYEKNQLILSKKQEQE-G 1320

Query: 1171 DFLERNLXXXXXXXXKQNKYDLLSYKFLNYADKKESYIHG--SPFQANKKKAISYTRT-- 1004
            D LE  +        KQ +YDL +Y++L++ADKK+SYI+G  SP Q NK +AISY     
Sbjct: 1321 DLLEIEI---KKKIKKQYRYDLFAYQYLHFADKKKSYIYGYRSP-QGNKNQAISYNYNPC 1376

Query: 1003 -KEFFDRADAI-------------IDMEKNLDRKYFDWMVINRKIPKPSVSNSSYL---- 878
             KEF D    I             +DMEKNLDRKYF+WM +N K  K S+ N   L    
Sbjct: 1377 KKEFLDIIGDISIQNYLDLEEYDTLDMEKNLDRKYFNWMGMNVKRKKTSIPNKKLLIPQF 1436

Query: 877  -YFLKLKRLYDAYKKNPWIMPIKSLFFQFYGNQK-----AEYASRVDLNSSFSNQERDIE 716
             +F KL   Y AYK NPWI+PIK    Q YG         EY S VD++    ++     
Sbjct: 1437 WFFSKLSNFYYAYKMNPWILPIKFFVLQLYGQDNLELTTEEYVSPVDVD--LKSRSYYYN 1494

Query: 715  RLDNKKRAK-SIERDFLVRKYLGFHLNYSTPLDEIMMNNIQLNYLLVGLQKTKKIMIDSI 539
              D+K R     ERDFL+ KYLGF+L+  +   EI M+NI L  LL+ ++  KKI+I SI
Sbjct: 1495 GSDSKYRTDLRGERDFLLSKYLGFYLHCDSSDQEIGMDNINLFILLLRMKNLKKIVIMSI 1554

Query: 538  KKGELNLESLVMFPNQKDFTL-----NNELLEKEMFFREPVRLPRKNNEQFLMYQTISLS 374
            KK EL+LE LV     KDF         +L ++ +FF EP+RL  KN+E  L+YQTI + 
Sbjct: 1555 KKLELDLEMLV-DSITKDFCYTECRDTEDLKDRLIFFIEPIRLSTKNHEHSLIYQTIRVP 1613

Query: 373  LNHKNLPQMFQRNPEKSR--------KDKNHYDLLVPENILSTRRRRELRILLCFNPRNR 218
            L HK+  +    + +KSR        KDKN YDL VPEN+LS RRRRELRIL CFNP+NR
Sbjct: 1614 LIHKS-KRRKSWSWKKSRVDQKITENKDKNLYDLFVPENLLSPRRRRELRILTCFNPKNR 1672

Query: 217  NSVDKNKIFXXXXXXXXXXXXXXKCCQVLAKNKDLDREKKKLMNLKFFLWPNYRLEDLAC 38
            N+V +  I                  QVLAKNKDLD E KKLMN K FLWPNYRLEDLAC
Sbjct: 1673 NTVHRKTI-------NDNENQIKNVSQVLAKNKDLDSETKKLMNFKLFLWPNYRLEDLAC 1725

Query: 37   INRYWFDTHNGS 2
            INRYWF+THNGS
Sbjct: 1726 INRYWFNTHNGS 1737


>ref|YP_009141729.1| hypothetical chloroplast RF19 (chloroplast) [Medicago papillosa]
            gi|675298636|gb|AIL56254.1| hypothetical chloroplast RF19
            (chloroplast) [Medicago papillosa]
          Length = 1758

 Score =  706 bits (1822), Expect = 0.0
 Identities = 437/798 (54%), Positives = 515/798 (64%), Gaps = 58/798 (7%)
 Frame = -1

Query: 2221 TILKERRKWTIQSLLKSILFRFIKIDE-IDEIGENKKDSTISKNNP---MIYESPVLIQS 2054
            T+LK+   W I   LKSIL RF  IDE +DE+ E+KK STISKNN    +I ESPV ++S
Sbjct: 969  TMLKKIENWKI---LKSILVRFKTIDETVDELSESKKTSTISKNNSKIEVIEESPVKMES 1025

Query: 2053 ISWTNSCSLTEKRIKDLNVKTKTIINEIEKMTKEKEGGVITSEKNLNPNKTTYDAKRLEL 1874
            I+WTNS S TEKRIKDLNVKTKTII +IE MT+EK+ G++TSE NLN NKTTYDAKRLEL
Sbjct: 1026 INWTNS-SFTEKRIKDLNVKTKTIIKQIETMTEEKKEGILTSEINLNSNKTTYDAKRLEL 1084

Query: 1873 QKNIFQILQRRNVRLTRKLYSFFPFLMERVYIDIFLSIISIPRTKVQLFLEXXXXXXXXX 1694
            QKNI QILQRR VRL RK YSFF   +E VYIDI L I SI R   Q FL+         
Sbjct: 1085 QKNILQILQRRFVRLIRKSYSFFKIFIEGVYIDILLCISSIARIHRQRFLDFLESTDKIL 1144

Query: 1693 XXXXXXN------AERIDKTNQSIIPFMSIIHKSRRIRKTNSPNSYDVSSLSQAYVFFKL 1532
                          ERI+  NQSIIP MSII KS  I   NS NS+DVSSLSQ YV +KL
Sbjct: 1145 NVKKSIYYKKKKMEERIE--NQSIIP-MSIIDKSVNITNMNSQNSWDVSSLSQLYVLYKL 1201

Query: 1531 SQTQVINLNKYKLRSVFESHGRSFFLKNEIKNSFFRIQGISNSKLRHKNLPDSVMNQWKN 1352
            SQ QV N  K+KLRS+FES GRSFFLKNEIK+ FFRIQG SNSKLRH   PDS+MNQW N
Sbjct: 1202 SQIQVSNGYKFKLRSIFESPGRSFFLKNEIKDYFFRIQGTSNSKLRHTKRPDSLMNQWTN 1261

Query: 1351 WLKVHHQYDLPQSRWSRLVPQNWRNRIHEHRVAQNKDLTEYDSYEKTPLILYKKEPIDVK 1172
            WLK+H+QYDLP++RWSRLV QNWRNRI+EHRVAQ KDL EYDSYEK  LIL KK+  +  
Sbjct: 1262 WLKLHYQYDLPENRWSRLVSQNWRNRINEHRVAQKKDLVEYDSYEKNQLILSKKQEQE-G 1320

Query: 1171 DFLERNLXXXXXXXXKQNKYDLLSYKFLNYADKKESYIHG--SPFQANKKKAISYTRT-- 1004
            D LE  +        KQ +YDL +Y++L++ADKK+SYI+G  SP Q NK +AISY     
Sbjct: 1321 DLLEIEI---KKKIKKQYRYDLFAYQYLHFADKKKSYIYGYRSP-QGNKNQAISYNYNPC 1376

Query: 1003 -KEFFDRADAI-------------------IDMEKNLDRKYFDWMVINRKIPKPSVSNSS 884
             KEF D    I                   +DMEKNLDRKYF+WM +N K  K S+ N  
Sbjct: 1377 RKEFLDIIGDISIQNYLDLEEYDTLDMEKNLDMEKNLDRKYFNWMGMNVKRKKTSIPNKK 1436

Query: 883  YL-----YFLKLKRLYDAYKKNPWIMPIKSLFFQFYGNQK-----AEYASRVDLNSSFSN 734
             L     +F KL   Y AYK NPWI+PIK    Q YG         EY S VD++    +
Sbjct: 1437 LLIPQFWFFSKLSNFYYAYKMNPWILPIKFFVLQLYGQDNLELTTEEYVSPVDVD--LKS 1494

Query: 733  QERDIERLDNKKRAK-SIERDFLVRKYLGFHLNYSTPLDEIMMNNIQLNYLLVGLQKTKK 557
            +       D+K R     ERDFL+ KYLGF+L+  +   EI M+NI L  LL+ ++  KK
Sbjct: 1495 RSYYYNGSDSKYRTDLRGERDFLLSKYLGFYLHCDSSDQEIGMDNINLFILLLRMKNLKK 1554

Query: 556  IMIDSIKKGELNLESLVMFPNQKDFTL-----NNELLEKEMFFREPVRLPRKNNEQFLMY 392
            I+I SIKK EL+LE LV     KDF         +L ++ +FF EP+RL  KN+E  L+Y
Sbjct: 1555 IVIMSIKKLELDLEMLV-DSITKDFCYTECRDTEDLKDRLIFFIEPIRLSTKNHEHSLIY 1613

Query: 391  QTISLSLNHKNLPQMFQRNPEKSR--------KDKNHYDLLVPENILSTRRRRELRILLC 236
            QTI + L HK+  +    + +KSR        KDKN YDL VPEN+LS RRRRELRIL C
Sbjct: 1614 QTIRVPLIHKS-KRRKSWSWKKSRVDQKITENKDKNLYDLFVPENLLSPRRRRELRILTC 1672

Query: 235  FNPRNRNSVDKNKIFXXXXXXXXXXXXXXKCCQVLAKNKDLDREKKKLMNLKFFLWPNYR 56
            FNP+NRN+V +  I                  QVLAKNKDLD E KKLMN K FLWPNYR
Sbjct: 1673 FNPKNRNTVHRKTI-------NDNENQIKNVSQVLAKNKDLDSETKKLMNFKLFLWPNYR 1725

Query: 55   LEDLACINRYWFDTHNGS 2
            LEDLACINRYWF+THNGS
Sbjct: 1726 LEDLACINRYWFNTHNGS 1743


>ref|YP_009033557.1| hypothetical chloroplast RF19 (chloroplast) [Trifolium meduseum]
            gi|620598392|gb|AHY20422.1| putative protein RF19
            (chloroplast) [Trifolium meduseum]
            gi|629513340|gb|AHY85636.1| hypothetical chloroplast RF19
            (chloroplast) [Trifolium meduseum]
            gi|672425270|gb|AIJ28107.1| hypothetical chloroplast RF19
            (chloroplast) [Trifolium meduseum]
          Length = 1789

 Score =  704 bits (1816), Expect = 0.0
 Identities = 423/818 (51%), Positives = 520/818 (63%), Gaps = 78/818 (9%)
 Frame = -1

Query: 2221 TILKERRKWTIQSLLKSILFRFIKIDEIDEIGENKKDSTISKNNPMIYESPVLIQSISWT 2042
            T+L E   W I+SLL    F F KID++ E   +KK STISKNNP+I ESPV+I+SI+WT
Sbjct: 997  TMLNEIENWNIESLL----FGFKKIDKLSE---SKKISTISKNNPIIEESPVIIESINWT 1049

Query: 2041 NSCSLTEKRIKDLNVKTKTIINEIEKMTKEKEGGVITSEKNLNPNKTTYDAKRLELQKNI 1862
            NS S TEKRIKDLNVKTKTI  +IEKMT+EK+ G+ITSE NLN NKTTY+AK LELQKNI
Sbjct: 1050 NS-SFTEKRIKDLNVKTKTIRKQIEKMTEEKKEGIITSEINLNSNKTTYEAKILELQKNI 1108

Query: 1861 FQILQRRNVRLTRKLYSFFPFLMERVYIDIFLSIISIPRTKVQLFLEXXXXXXXXXXXXX 1682
             Q LQRR +RL RK YSFF   MERVYIDI L I S  R   Q F++             
Sbjct: 1109 LQ-LQRRTIRLIRKSYSFFKIFMERVYIDILLCISSNTRIHGQRFVDFLLDFLESRNKIV 1167

Query: 1681 XXNA------ERIDKTNQSIIPFMSIIHKSRRIRKTNSPNSYDVSSLSQAYVFFKLSQTQ 1520
              +       ERI+KTNQSIIPFMSII KS  I   NS N YDVSSLSQAYV FKLSQ Q
Sbjct: 1168 NKSISKKKNEERINKTNQSIIPFMSIIDKSWNITNMNSKNCYDVSSLSQAYVLFKLSQMQ 1227

Query: 1519 VINLNKYKLRSVFESHGRSFFLKNEIKNSFFRIQGISNSKLRHKNLPDSVMNQWKNWLKV 1340
            V N +KYKLRS+FESHGRSFF+K EIK+ F RIQGI NSKLRHKN PDS+MNQW NWLKV
Sbjct: 1228 VRNGDKYKLRSIFESHGRSFFIKKEIKDYFLRIQGI-NSKLRHKNRPDSLMNQWTNWLKV 1286

Query: 1339 HHQYDLPQSRWSRLVPQNWRNRIHEHRVAQNKDLTEYDSYEKTPLILYKKEPIDVKDFLE 1160
            H+QYDLP+S WSRL+ QNWRNRI+EHRVAQNKDL EYDS EKT LILYKKE    ++  +
Sbjct: 1287 HYQYDLPRSTWSRLLAQNWRNRINEHRVAQNKDLVEYDSTEKTQLILYKKE----QEQEQ 1342

Query: 1159 RNLXXXXXXXXKQNKYDLLSYKFLNYADKKESYIHG--SPFQANKKKAISYTRTKEFFD- 989
              L        KQ +YDL SY+ +NYADKK+SYI+G  SPF+ANK +AI Y   +E  D 
Sbjct: 1343 VELVERKKKIQKQYRYDLFSYQHINYADKKKSYIYGYRSPFRANKNQAIYYNYNRELLDI 1402

Query: 988  ------RADAIIDMEKNLDRKYFDWMVIN-----RKIPKPSVSNSSYLYFLKLKRLYDAY 842
                        DMEKNL+RKYF+WM IN       IP P + NS + +F K + L+D Y
Sbjct: 1403 IVGSSIENYLAGDMEKNLNRKYFNWMGINVERKKNSIPNPQLLNSRFWFFSKFRILFDKY 1462

Query: 841  KKNPWIMPIKSLFFQFYGNQKAEY-------------------------ASRVDLNSSFS 737
            ++NP+   I S++  F GN++  Y                         A+  D+    S
Sbjct: 1463 RENPFY--ISSMYRLFSGNERITYENALENARPKEGLAKERLKTTSKEGATPKDIKGPTS 1520

Query: 736  NQE--------RDIERLDNKKRAKSI----------ERDFLVRKYLGFHLNYSTPLDEIM 611
             +E        R  + + N  R   I          ERDFL+ +Y+G +L+    + E +
Sbjct: 1521 LKELKIKFKSSRYYQPVSNHSRMNKIHKQYRTSLKRERDFLLERYVGVYLDCDISVQETL 1580

Query: 610  MNNIQLNYLLVGLQKTKKIMIDSIKKGELNLESLVMFPNQKDFTL-----NNELLEKEMF 446
            +N+  +  LL+ +++ KKI+I SIKK +LN++  +     +D++       +EL    +F
Sbjct: 1581 LNHSNIFLLLLKMKRLKKIVITSIKKADLNMD-YITHVTSRDYSYTECRDTDELKNNLVF 1639

Query: 445  FREPVRLPRKNNEQFLMYQTISLSLNHKNLPQMFQRNPEKSR--------KDKNHYDLLV 290
            F EP+R+ RKN E+F +Y+T ++ L  KN     +  PEKSR        K+KNH DLLV
Sbjct: 1640 FIEPIRISRKNYEEFFIYKTTTVLLQKKN-----KFWPEKSRVHQQITEKKEKNHSDLLV 1694

Query: 289  PENILSTRRRRELRILLCFNP--RNRNSVDKNKIFXXXXXXXXXXXXXXKCCQVLAKNKD 116
            PEN+LSTRRRRELRIL+C +P  RNRN+  +N                    QVLAKNKD
Sbjct: 1695 PENLLSTRRRRELRILICLDPPSRNRNTAPRN-----------------TRNQVLAKNKD 1737

Query: 115  LDREKKKLMNLKFFLWPNYRLEDLACINRYWFDTHNGS 2
            LD E KKLMNLKFFLWPNYRLEDLACINRYWFDTHNG+
Sbjct: 1738 LDSETKKLMNLKFFLWPNYRLEDLACINRYWFDTHNGT 1775


>gb|AGS43959.1| hypothetical chloroplast RF19 [Vicia faba]
          Length = 1681

 Score =  689 bits (1779), Expect = 0.0
 Identities = 412/785 (52%), Positives = 497/785 (63%), Gaps = 46/785 (5%)
 Frame = -1

Query: 2218 ILKERRKWTIQSLLKSILFRFIKIDEIDEIGENKKDSTISKNNPMIYESPVLIQSISWTN 2039
            +  ER+K + + +L+ I  RF K DE+ E   +KK+STISK+NPMI ESPVLIQS++WTN
Sbjct: 920  VFNERKKGS-RIVLEEIENRFKKRDELSE---SKKNSTISKSNPMIEESPVLIQSMNWTN 975

Query: 2038 SCSLTEKRIKDLNVKTKTIINEIEKMTKEKEGGVITSEKNLNPNKTTYDAKRLELQKNIF 1859
                TEKRIKDLNVKTKTI+ ++EKMT+EK+ GVIT E NLN  KTTYDAKRLEL KN  
Sbjct: 976  ---FTEKRIKDLNVKTKTILKQLEKMTEEKKEGVITLEINLNSTKTTYDAKRLELLKNSL 1032

Query: 1858 QILQRRNVRLTRKLYSFFPFLMERVYIDIFLSIISIPRTKVQLFLEXXXXXXXXXXXXXX 1679
            +IL+RR VRL RK Y FF  LM R+YI+I  SI  I     Q FL               
Sbjct: 1033 KILKRRTVRLIRKSYFFFQILMGRIYIEIVFSITRIIMMSGQRFLNIIELTDKIVNVFIS 1092

Query: 1678 XNA-----ERIDKTNQSIIPFMSIIHKSRRIRKTNSPNSYDVSSLSQAYVFFKLSQTQVI 1514
                    +R+ KTN+SIIPFMSII KS  I   NS NS DVSSLSQAYVFFKLSQ  V 
Sbjct: 1093 IYTKKKNEQRVHKTNESIIPFMSIIDKSWNITDMNSQNSCDVSSLSQAYVFFKLSQ--VS 1150

Query: 1513 NLNKYKLRSVFESHGRSFFLKNEIKNSFFRIQGIS-NSKLRHKNLPDSVMNQWKNWLKVH 1337
            N  KYKLRS+FESHGRS FLKNEIK+ FFRIQG   NSKLRHKN PDS+MNQW NWLKVH
Sbjct: 1151 NGYKYKLRSIFESHGRSLFLKNEIKDYFFRIQGGRLNSKLRHKNRPDSIMNQWINWLKVH 1210

Query: 1336 HQYDLPQSRWSRLVPQNWRNRIHEHRVAQNKDLTEYDSYEKTPLILYKKEPIDVKDFLER 1157
            +QY LPQS WS+LVPQ WR RIHEHRVAQ K+L EYDS EK   I YKK+     D LE+
Sbjct: 1211 YQYALPQSGWSKLVPQKWRKRIHEHRVAQKKNLVEYDSSEKNQFIFYKKQKKQQVDLLEK 1270

Query: 1156 NLXXXXXXXXKQNKYDLLSYKFLNYADKKESYIHG--SPFQANKKKAISYT---RTKEFF 992
                      KQ  YDL SY+++NYAD K+SYI+G  SP QANK + I+Y      KE F
Sbjct: 1271 K-----KKIKKQYGYDLFSYQYINYADNKKSYIYGYKSPLQANKNQTINYNIPKNKKELF 1325

Query: 991  D-----------RADAIID-----MEKNLDRKYFDWMVINRKIPKPS--VSNSSYLYFLK 866
            D             D IID     MEKNL+RKY +WM   +K  K +  +    + +F K
Sbjct: 1326 DIMGDSFIQNYIAEDGIIDMDMETMEKNLNRKYLNWMGKRKKNSKTNQKLLTPRFGFFSK 1385

Query: 865  LKRLYDAYKKNPWIMPIKSLFFQFYGN-----------QKAEYASRVDLNSSFSNQERDI 719
            L     AYKKNPWI+P+   F QFYGN           +K EY  + DL S  SN  RD 
Sbjct: 1386 L----SAYKKNPWILPMNFFFVQFYGNKNITDVAKLKLEKKEYGKQADLKSYLSNYYRDT 1441

Query: 718  E-RLDNKKRAKSIERDFLVRKYLGFHLNYSTPLDEIMMNNIQLNYLLVGLQKTKKIMIDS 542
               +   ++  + E++FL+ KY GF+L+  TP+ E +M+NI L  LLV L+  K+  I S
Sbjct: 1442 RYSITRYRKDLNGEQNFLLDKYFGFYLHCKTPVQETLMDNINLYCLLVRLKNLKQFFIMS 1501

Query: 541  IKKGELNLESLVMFPNQKDFTL-----NNELLEKEMFFREPVRLPRKNNEQFLMYQTISL 377
            IKK +L+ E        KD          EL +  MFF EP+R+ RKN EQF +YQTIS+
Sbjct: 1502 IKKADLDFEITARL-QMKDTCYTECRDTEELRDNLMFFIEPIRISRKNYEQFFIYQTISI 1560

Query: 376  SLNHKNLPQMFQRNPEKSRKDKNHYDLLVPENILSTRRRRELRILLCFNPRNRNSVDKNK 197
            SL HK   ++ +RN          YDLLVPEN+LSTRRRRELRIL+C NP+NRN+V +N 
Sbjct: 1561 SLRHKR--KILKRN----------YDLLVPENLLSTRRRRELRILICLNPQNRNTVHRNT 1608

Query: 196  IFXXXXXXXXXXXXXXKCCQVLAKNKDLDREKKKLMNLKFFLWPNYRLEDLACINRYWFD 17
            I                  +VL +N+D+D + KKLM LKFFLWPNYR EDLAC+NRYWFD
Sbjct: 1609 I-------NDTEKKRNNSSEVLTQNEDIDSDTKKLMTLKFFLWPNYRFEDLACMNRYWFD 1661

Query: 16   THNGS 2
            THNGS
Sbjct: 1662 THNGS 1666


>gb|AFR60005.1| hypothetical chloroplast RF1 [Medicago truncatula]
          Length = 1764

 Score =  679 bits (1752), Expect = 0.0
 Identities = 419/791 (52%), Positives = 505/791 (63%), Gaps = 51/791 (6%)
 Frame = -1

Query: 2221 TILKERRKWTIQSLLKSILFRFIKIDE-IDEIGENKKDSTISKNNP------MIYESPVL 2063
            T+LK+   W I+ +LKSILFRF  IDE IDE+ E+KK STISKNN       +I ESPV 
Sbjct: 976  TMLKKIENWNIKRILKSILFRFKIIDETIDELSESKKTSTISKNNSKIEVIEVIEESPVK 1035

Query: 2062 IQSISWTNSCSLTEKRIKDLNVKTKTIINEIEKMTKEKEGGVITSEKNLNPNKTTYDAKR 1883
            ++SI+WTNS S TEKRIKDLNVKTKTII +IE MT+EK+ G++TSE NLN NKTTYDAKR
Sbjct: 1036 MESINWTNS-SFTEKRIKDLNVKTKTIIKQIETMTEEKKEGILTSEINLNSNKTTYDAKR 1094

Query: 1882 LELQKNIFQILQRRNVRLTRKLYSFFPFLMERVYIDIFLSIISIPRTKVQLFLEXXXXXX 1703
            LELQKN  QIL+RR VRL RK YSFF   +E VYIDI L I SI R  +Q FL+      
Sbjct: 1095 LELQKNNLQILKRRFVRLIRKSYSFFKIFIEGVYIDILLCISSIARIHLQRFLDFLESTD 1154

Query: 1702 XXXXXXXXXN---------AERIDKTNQSIIPFMSIIHKSRRIRKTNSPNSYDVSSLS-- 1556
                                ER +  N S+   +SI+ KS  I   NS NS+DVSSLS  
Sbjct: 1155 KILNVKKPIYDKKKKMEEMEERFE--NLSVSRLISILEKSENITNMNSQNSWDVSSLSSL 1212

Query: 1555 -QAYVFFKLSQTQVINLNKYKLRSVFESHGRSFFLKNEIKNSFFRIQGISNSKLRHKNLP 1379
             Q YVFFKLSQ Q  N +K+K+RS+ ES GRSFFLKNEIK+ FFR+QG  NSKLRHK   
Sbjct: 1213 SQEYVFFKLSQIQFSNGSKFKIRSILESPGRSFFLKNEIKDYFFRMQGTYNSKLRHKKRS 1272

Query: 1378 DSVMNQWKNWLKVHHQYDLPQSRWSRLVPQNWRNRIHEHRVAQNKDLTEYDSYEKTPLIL 1199
            DS+MN W NW KV +QYDLP+ RWSRLV QNWRNRI+EHRVAQNKDL EYDSYEK  LI 
Sbjct: 1273 DSLMNPWTNWFKVLYQYDLPEKRWSRLVSQNWRNRINEHRVAQNKDLVEYDSYEKNQLI- 1331

Query: 1198 YKKEPIDVKDFLERNL--XXXXXXXXKQNKYDLLSYKFLNYADKKESYIHG--SPFQANK 1031
            +K+  +  K   E +L          KQ +YDL SY++LN+A+KK+S I+G  SP   NK
Sbjct: 1332 WKELILSKKQEQEGDLLKIEIKNKIKKQYRYDLFSYQYLNFANKKKSSIYGYRSP---NK 1388

Query: 1030 KKAISYT------RTKEFFDRADAIIDMEKNLDRKYFDWMVINRKIPKPSVSNSSYL--- 878
             +AISY          E +D  D   ++EKNLDRKYF+WM +N K  K S     +L   
Sbjct: 1389 NQAISYNYNISIQNYLEEYDILDMEKNLEKNLDRKYFNWMGMNVKRKKTSRPKDKFLIPG 1448

Query: 877  --YFLKLKRLYDAYKKNPWIMPIKSLFFQFYGNQ--KAEYASRVDLNSSFSNQERDIERL 710
              +F KL +LY AYK NPWI+PIK    Q    +    EY + VD      +     +  
Sbjct: 1449 FWFFSKLSKLYCAYKMNPWILPIKFFVLQLDNLELTTEEYVNTVD--EDLKSVSYYYKGS 1506

Query: 709  DNKKRAK-SIERDFLVRKYLGFHLNYSTPLDEIMMNNIQLNYLLVGLQKTKKIMIDSIKK 533
            D+K R     ERDFL+ KYLGF+L+  +  +EI M+N  L  LL+ ++K  KI+I SIKK
Sbjct: 1507 DSKYRTDLKGERDFLLSKYLGFYLHCDSSDEEIGMDNTNLFCLLLRMKKFNKIVIMSIKK 1566

Query: 532  GELNLESLVMFPNQKDFTL-----NNELLEKEMFFREPVRLPRKNNEQFLMYQTISLSLN 368
             EL++E LV     KDF         +L E+ +FF EP+RLPRK +EQ L+YQTI L L 
Sbjct: 1567 LELDIEMLV-DSRTKDFCYTECRDTEDLKERLIFFIEPIRLPRKKHEQSLLYQTIRLPLI 1625

Query: 367  HKN-LPQMFQRNPEKSR--------KDKNHYDLLVPENILSTRRRRELRILLCFNPRNRN 215
            HK+   + +    +KSR        KDKN YDL VPEN+LSTRRRRELRIL CFNPRNRN
Sbjct: 1626 HKSKTRKSWSWKKKKSRVDQKITENKDKNLYDLFVPENLLSTRRRRELRILTCFNPRNRN 1685

Query: 214  SVDKNKIFXXXXXXXXXXXXXXKCCQVLAKNKDLDREKKKLMNLKFFLWPNYRLEDLACI 35
            +V +  I                  QVL KNKDLD E KKLMN K FLWPNYRLEDLACI
Sbjct: 1686 TVHRKTI-------NDNENQIKNVSQVLTKNKDLDSETKKLMNFKLFLWPNYRLEDLACI 1738

Query: 34   NRYWFDTHNGS 2
            NRYWF+THNGS
Sbjct: 1739 NRYWFNTHNGS 1749


>gb|AFR60081.1| hypothetical chloroplast RF1 [Medicago truncatula]
          Length = 1756

 Score =  677 bits (1748), Expect = 0.0
 Identities = 419/791 (52%), Positives = 504/791 (63%), Gaps = 51/791 (6%)
 Frame = -1

Query: 2221 TILKERRKWTIQSLLKSILFRFIKIDE-IDEIGENKKDSTISKNNP------MIYESPVL 2063
            T+LK+   W I+ +LKSILFRF  IDE IDE+ E+KK STISKNN       +I ESPV 
Sbjct: 968  TMLKKIENWNIKRILKSILFRFKIIDETIDELSESKKTSTISKNNSKIEVIEVIEESPVK 1027

Query: 2062 IQSISWTNSCSLTEKRIKDLNVKTKTIINEIEKMTKEKEGGVITSEKNLNPNKTTYDAKR 1883
            ++SI+WTNS S TEKRIKDLNVKTKTII +IE MT+EK+ G++TSE NLN NKTTYDAKR
Sbjct: 1028 MESINWTNS-SFTEKRIKDLNVKTKTIIKQIETMTEEKKEGILTSEINLNSNKTTYDAKR 1086

Query: 1882 LELQKNIFQILQRRNVRLTRKLYSFFPFLMERVYIDIFLSIISIPRTKVQLFLEXXXXXX 1703
            LELQKN  QILQRR VRL RK YSFF   +E VYIDI L I SI R   Q FL+      
Sbjct: 1087 LELQKNNLQILQRRFVRLIRKSYSFFKIFIEGVYIDILLCISSIARIHGQRFLDFLESTD 1146

Query: 1702 XXXXXXXXXN---------AERIDKTNQSIIPFMSIIHKSRRIRKTNSPNSYDVSSLS-- 1556
                                ER +  N S+   +SI+ KS  I   NS NS+DVSSLS  
Sbjct: 1147 KILNVKKPIYDKKKKMEEMEERFE--NLSLSRLISILEKSENITNMNSQNSWDVSSLSSL 1204

Query: 1555 -QAYVFFKLSQTQVINLNKYKLRSVFESHGRSFFLKNEIKNSFFRIQGISNSKLRHKNLP 1379
             Q YVF+KLSQ Q  N +K+K+RS+ ES GRSFFLKNEIK+ FFR+QG  NSKLRHK   
Sbjct: 1205 PQEYVFYKLSQIQFSNGSKFKIRSILESPGRSFFLKNEIKDYFFRMQGTYNSKLRHKKRS 1264

Query: 1378 DSVMNQWKNWLKVHHQYDLPQSRWSRLVPQNWRNRIHEHRVAQNKDLTEYDSYEKTPLIL 1199
            DS+MN W NW KV +QYDLP+ RWSRLV QNWRNRI+EHRVAQNKDL EYDSYEK  LI 
Sbjct: 1265 DSLMNPWTNWFKVLYQYDLPEKRWSRLVSQNWRNRINEHRVAQNKDLVEYDSYEKNQLI- 1323

Query: 1198 YKKEPIDVKDFLERNL--XXXXXXXXKQNKYDLLSYKFLNYADKKESYIHG--SPFQANK 1031
            +K+  +  K   E +L          KQ +YDL SY++LN+A+KK+S I+G  SP   NK
Sbjct: 1324 WKELILSKKQEQEGDLLKIEIKNKIKKQYRYDLFSYQYLNFANKKKSSIYGYRSP---NK 1380

Query: 1030 KKAISYT------RTKEFFDRADAIIDMEKNLDRKYFDWMVINRKIPKPSVSNSSYL--- 878
             +AISY          E +D  D   ++EKNLDRKYF+WM +N K  K S     +L   
Sbjct: 1381 NQAISYNYNISIQNYLEEYDILDMEKNLEKNLDRKYFNWMGMNVKRKKTSRPKDKFLIPG 1440

Query: 877  --YFLKLKRLYDAYKKNPWIMPIKSLFFQFYGNQ--KAEYASRVDLNSSFSNQERDIERL 710
              +F KL +LY AYK NPWI+PIK    Q    +    EY + VD      +     +  
Sbjct: 1441 FWFFSKLSKLYCAYKMNPWILPIKFFVLQLDNLELTTEEYVNTVD--EDLKSVSYYYKGS 1498

Query: 709  DNKKRAK-SIERDFLVRKYLGFHLNYSTPLDEIMMNNIQLNYLLVGLQKTKKIMIDSIKK 533
            D+K R     ERDFL+ KYLGF+L+  +  +EI M+N  L  LL+ ++K  KI+I SIKK
Sbjct: 1499 DSKYRTDLKGERDFLLSKYLGFYLHCDSSDEEIGMDNTNLFCLLLRMKKFNKIVIMSIKK 1558

Query: 532  GELNLESLVMFPNQKDFTL-----NNELLEKEMFFREPVRLPRKNNEQFLMYQTISLSLN 368
             EL++E LV     KDF         +L E+ +FF EP+RLPRK +EQ L+YQTI L L 
Sbjct: 1559 LELDIEMLV-DSRTKDFCYTECRDTEDLKERLIFFIEPIRLPRKKHEQSLLYQTIRLPLI 1617

Query: 367  HKN-LPQMFQRNPEKSR--------KDKNHYDLLVPENILSTRRRRELRILLCFNPRNRN 215
            HK+   + +    +KSR        KDKN YDL VPEN+LSTRRRRELRIL CFNPRNRN
Sbjct: 1618 HKSKTRKSWSWKKKKSRVDQKITENKDKNLYDLFVPENLLSTRRRRELRILTCFNPRNRN 1677

Query: 214  SVDKNKIFXXXXXXXXXXXXXXKCCQVLAKNKDLDREKKKLMNLKFFLWPNYRLEDLACI 35
            +V +  I                  QVL KNKDLD E KKLMN K FLWPNYRLEDLACI
Sbjct: 1678 TVHRKTI-------NDNENQIKNVSQVLTKNKDLDSETKKLMNFKLFLWPNYRLEDLACI 1730

Query: 34   NRYWFDTHNGS 2
            NRYWF+THNGS
Sbjct: 1731 NRYWFNTHNGS 1741


>ref|YP_009141759.1| hypothetical chloroplast RF19 (chloroplast) [Vicia sativa]
            gi|675298667|gb|AIL56284.1| hypothetical chloroplast RF19
            (chloroplast) [Vicia sativa]
          Length = 1702

 Score =  676 bits (1745), Expect = 0.0
 Identities = 405/789 (51%), Positives = 493/789 (62%), Gaps = 50/789 (6%)
 Frame = -1

Query: 2218 ILKERRKWTIQSL-LKSILFRFIKIDEIDEIGENKKDSTISKNNPMIYESPVLIQSISWT 2042
            +L ER+K  ++ +  K  +    +  + DE+ E+KK+STISK+NPMI ESPV+IQS++ T
Sbjct: 923  VLNERKKGLLEEIEKKDSILEHHRFKKRDELSESKKNSTISKSNPMIEESPVIIQSMNGT 982

Query: 2041 NSCSLTEKRIKDLNVKTKTIINEIEKMTKEKEGGVITSEKNLNPNKTTYDAKRLELQKNI 1862
            N    TEKRIKDL+V+TKTI+N++EKMT+EK+ GV+TSE +LN  KT YDAKRLEL KN 
Sbjct: 983  N---FTEKRIKDLHVETKTILNQLEKMTEEKKEGVLTSEIHLNSTKTPYDAKRLELLKNS 1039

Query: 1861 FQILQRRNVRLTRKLYSFFPFLMERVYIDIFLSIISIPRTKVQLFLEXXXXXXXXXXXXX 1682
             + ++RR VRL RK    F  LM R+Y +I  + I I        L              
Sbjct: 1040 LKRVKRRTVRLIRKSSFLFQILMGRIYREILFASIRIIMRYGPRVLTIIELTEKIVIDIK 1099

Query: 1681 XXNAERIDKTNQSIIPFMSIIHKSRRIRKTNSPNSYDVSSLSQAYVFFKLSQTQVINLNK 1502
                +R+ KTN+S+IPFMS+I KS  I   NS NS DVSSLSQAYV FKLSQ  V N  K
Sbjct: 1100 KKKEQRVHKTNESLIPFMSMIDKSWNITDMNSQNSCDVSSLSQAYVCFKLSQ--VSNGYK 1157

Query: 1501 YKLRSVFESHGRSFFLKNEIKNSFFRIQGIS-NSKLRHKNLPDSVMNQWKNWLKVHHQYD 1325
            YKLRS+FESHGRSFFLKNEIK+ FFRIQG   NSKLRHKN PDS+MNQW NWLKVH+QY 
Sbjct: 1158 YKLRSIFESHGRSFFLKNEIKDYFFRIQGRRFNSKLRHKNRPDSIMNQWTNWLKVHYQYS 1217

Query: 1324 LPQSRWSRLVPQNWRNRIHEHRVAQNKDLTEYDSYEKTPLILYKKEPIDVKDFLERNLXX 1145
            LP S WSRLV Q WRNRIHEHRVAQ KD  EYDS EK  LI YKK+     D LE+    
Sbjct: 1218 LPHSVWSRLVAQKWRNRIHEHRVAQKKDFFEYDSSEKNLLIFYKKQKEQQVDLLEKK--- 1274

Query: 1144 XXXXXXKQNKYDLLSYKFLNYADKKESYIHG--SPFQANKKKAISYT---RTKEFFD--- 989
                  KQ  YDL SY++LNYAD K+SYI+G  S  QANK + I+Y      KE FD   
Sbjct: 1275 --KKIKKQYGYDLFSYQYLNYADNKKSYIYGYKSSLQANKNETINYNTPKNKKELFDIMG 1332

Query: 988  --------RADAIID-----MEKNLDRKYFDWMVINRKIPKPS--VSNSSYLYFLKLKRL 854
                      D +ID     MEKNL+RKY +WM   +K  K +  +    + +F KL   
Sbjct: 1333 DSFIKNYIAEDGVIDIYMETMEKNLNRKYLNWMGKRKKNSKTNQKLLTPRFGFFSKL--- 1389

Query: 853  YDAYKKNPWIMPIKSLFFQFYGN-----------QKAEYASRVDLNSSFSNQERDIERLD 707
              AYKKNPWI+PI   F QFYGN           +K EY  + DL S  SN  R      
Sbjct: 1390 -SAYKKNPWILPINFFFVQFYGNKNITDVVKLKLEKKEYVKQADLKSYLSNYYRKTRYNI 1448

Query: 706  NKKRAK-SIERDFLVRKYLGFHLNYSTPLDEIMMNNIQLNYLLVGLQKTKKIMIDSIKKG 530
            NK R   + E++FL+ KY GF+L+  +P+ E +M NI L  LLV L+  KK +I SIKK 
Sbjct: 1449 NKYRKDLNGEQNFLLDKYFGFYLHCPSPVQETIMENINLYCLLVRLKNLKKFLIMSIKKT 1508

Query: 529  ELNLESLVMFPNQKDFTL-----NNELLEKEMFFREPVRLPRKNNEQFLMYQTISLSLNH 365
            +L+ E+ V     KD          EL +  MFF EP+R+  KN EQF +YQTIS+SL H
Sbjct: 1509 DLDFETTVRL-QLKDTCYTECRDTEELRDNLMFFIEPIRISIKNYEQFFIYQTISISLRH 1567

Query: 364  KNLPQMFQRNPEKSR--------KDKNHYDLLVPENILSTRRRRELRILLCFNPRNRNSV 209
            K   ++ +RN EKSR         DKNHYDLLVPEN+LSTRRRRELRIL+C N RN N+V
Sbjct: 1568 KR--KILKRNSEKSRVHQKITEKNDKNHYDLLVPENLLSTRRRRELRILICLNHRNSNTV 1625

Query: 208  DKNKIFXXXXXXXXXXXXXXKCCQVLAKNKDLDREKKKLMNLKFFLWPNYRLEDLACINR 29
             +N I                   VL K KD+D + KKL+NLKFFLWPNYR EDLAC+NR
Sbjct: 1626 HRNTI-------NDNEKKINNSSHVLTKTKDIDNDTKKLINLKFFLWPNYRFEDLACMNR 1678

Query: 28   YWFDTHNGS 2
            YWFDTHNGS
Sbjct: 1679 YWFDTHNGS 1687


>ref|XP_003621686.2| membrane protein Ycf1, putative [Medicago truncatula]
            gi|657376887|gb|AES77904.2| membrane protein Ycf1,
            putative [Medicago truncatula]
          Length = 1158

 Score =  676 bits (1743), Expect = 0.0
 Identities = 417/782 (53%), Positives = 501/782 (64%), Gaps = 42/782 (5%)
 Frame = -1

Query: 2221 TILKERRKWTIQSLLKSILFRFIKIDE-IDEIGENKKDSTISKNNP------MIYESPVL 2063
            T+LK+   W I+ +LKSILFRF  IDE IDE+ E+KK STISKNN       +I ESPV 
Sbjct: 305  TMLKKIENWNIKRILKSILFRFKIIDETIDELSESKKTSTISKNNSKIEVIEVIEESPVK 364

Query: 2062 IQSISWTNSCSLTEKRIKDLNVKTKTIINEIEKMTKEKEGGVITSEKNLNPNKTTYDAKR 1883
            ++SI+WTNS S TEKRIKDLNVKTKTII +IE MT+EK+ G++TSE NLN NKTTYDAKR
Sbjct: 365  MESINWTNS-SFTEKRIKDLNVKTKTIIKQIETMTEEKKEGILTSEINLNSNKTTYDAKR 423

Query: 1882 LELQKNIFQILQRRNVRLTRKLYSFFPFLMERVYIDIFLSIISIPRTKVQLFLEXXXXXX 1703
            LELQKN  QILQRR VRL RK YSFF   +E VYIDI L I SI R   Q          
Sbjct: 424  LELQKNNLQILQRRFVRLIRKSYSFFKIFIEGVYIDILLCISSIARIHRQQM-------- 475

Query: 1702 XXXXXXXXXNAERIDKTNQSIIPFMSIIHKSRRIRKTNSPNSYDVSSLS---QAYVFFKL 1532
                       ER +  N S+   +SI+ KS  I   NS NS+DVSSLS   Q YVF+KL
Sbjct: 476  ----------EERFE--NLSLSRLISILEKSENITNMNSQNSWDVSSLSSLSQEYVFYKL 523

Query: 1531 SQTQVINLNKYKLRSVFESHGRSFFLKNEIKNSFFRIQGISNSKLRHKNLPDSVMNQWKN 1352
            SQ Q  N +K+K+RS+ ES GRSFFLKNEIK+ FFR+QG  NSKLRHK   DS+MN W N
Sbjct: 524  SQIQFSNGSKFKIRSILESPGRSFFLKNEIKDYFFRMQGTYNSKLRHKKRSDSLMNPWTN 583

Query: 1351 WLKVHHQYDLPQSRWSRLVPQNWRNRIHEHRVAQNKDLTEYDSYEKTPLILYKKEPIDVK 1172
            W KV +QYDLP+ RWSRLV QNWRNRI+EHRVAQNKDL EYDSYEK  LI +K+  +  K
Sbjct: 584  WFKVLYQYDLPEKRWSRLVSQNWRNRINEHRVAQNKDLVEYDSYEKNQLI-WKELILSKK 642

Query: 1171 DFLERNL--XXXXXXXXKQNKYDLLSYKFLNYADKKESYIHG--SPFQANKKKAISYT-- 1010
               E +L          KQ +YDL SY++LN+A+KK+S I+G  SP   NK +AISY   
Sbjct: 643  QEQEGDLLKIEIKNKIKKQYRYDLFSYQYLNFANKKKSSIYGYRSP---NKNQAISYNYN 699

Query: 1009 ----RTKEFFDRADAIIDMEKNLDRKYFDWMVINRKIPKPSVSNSSYL-----YFLKLKR 857
                   E +D  D   ++EKNLDRKYF+WM +N K  K S     +L     +F KL +
Sbjct: 700  ISIQNYLEEYDILDMEKNLEKNLDRKYFNWMGMNVKRKKTSRPKDKFLIPGFWFFSKLSK 759

Query: 856  LYDAYKKNPWIMPIKSLFFQFYGNQ--KAEYASRVDLNSSFSNQERDIERLDNKKRAK-S 686
            LY AYK NPWI+PIK    Q    +    EY + VD      +     +  D+K R    
Sbjct: 760  LYCAYKMNPWILPIKFFVLQLDNLELTTEEYVNTVD--EDLKSVSYYYKGSDSKYRTDLK 817

Query: 685  IERDFLVRKYLGFHLNYSTPLDEIMMNNIQLNYLLVGLQKTKKIMIDSIKKGELNLESLV 506
             ERDFL+ KYLGF+L+  +  +EI M+N  L  LL+ ++K  KI+I SIKK EL++E LV
Sbjct: 818  GERDFLLSKYLGFYLHCDSSDEEIGMDNTNLFCLLLRMKKFNKIVIMSIKKLELDIEMLV 877

Query: 505  MFPNQKDFTL-----NNELLEKEMFFREPVRLPRKNNEQFLMYQTISLSLNHKN-LPQMF 344
                 KDF         +L E+ +FF EP+RLPRK +EQ L+YQTI L L HK+   + +
Sbjct: 878  -DSRTKDFCYTECRDTEDLKERLIFFIEPIRLPRKKHEQSLLYQTIRLPLIHKSKTRKSW 936

Query: 343  QRNPEKSR--------KDKNHYDLLVPENILSTRRRRELRILLCFNPRNRNSVDKNKIFX 188
                +KSR        KDKN YDL VPEN+LSTRRRRELRIL CFNPRNRN+V +  I  
Sbjct: 937  SWKKKKSRVDQKITENKDKNLYDLFVPENLLSTRRRRELRILTCFNPRNRNTVHRKTI-- 994

Query: 187  XXXXXXXXXXXXXKCCQVLAKNKDLDREKKKLMNLKFFLWPNYRLEDLACINRYWFDTHN 8
                            QVL KNKDLD E KKLMN K FLWPNYRLEDLACINRYWF+THN
Sbjct: 995  -----NDNENQIKNVSQVLTKNKDLDSETKKLMNFKLFLWPNYRLEDLACINRYWFNTHN 1049

Query: 7    GS 2
            GS
Sbjct: 1050 GS 1051


>ref|YP_008145836.1| hypothetical chloroplast RF1 (chloroplast) [Glycine stenophita]
            gi|514253108|gb|AGO44367.1| hypothetical chloroplast RF1
            (chloroplast) [Glycine stenophita]
          Length = 1788

 Score =  675 bits (1741), Expect = 0.0
 Identities = 403/840 (47%), Positives = 520/840 (61%), Gaps = 103/840 (12%)
 Frame = -1

Query: 2212 KERRKWTIQSLLKSIL------------FRFI----KIDEIDEIGENKKDSTISKNNPMI 2081
            K   K  I+S+LKSIL            F+F+    K  +IDE+ E+KKDSTI KNNPMI
Sbjct: 954  KRISKSIIESILKSILKSILGLTKIKQFFKFLFIKFKFKKIDELNESKKDSTIYKNNPMI 1013

Query: 2080 YESPVLIQSISWTNSCSLTEKRIKDLNVKTKTIINEIEKMTKEKEGGVITSEKNLNPNKT 1901
             E+ + IQSI+  N CSL +K+IKD+N K K +I +IEK+ K+    ++ SE N++ NKT
Sbjct: 1014 SETTISIQSINSVN-CSLKKKKIKDINAKRKAVIKKIEKIKKK---WLVISETNIHSNKT 1069

Query: 1900 TYDAKRLELQKNIFQILQRR-NVRLTRKLYSFFPFLMERVYIDIFLSIISIPRTKVQLFL 1724
            TYD+KR+EL+K  +QILQ+R N RLTRK  SFF F M+R+Y DIFL I  IPR  +QLFL
Sbjct: 1070 TYDSKRVELEKKKWQILQKRKNARLTRKSNSFFKFFMKRIYRDIFLYISCIPRINIQLFL 1129

Query: 1723 EXXXXXXXXXXXXXXXNAERIDKTNQSIIPFMSIIHKSRRIRKTNSPNSYDVSSLSQAYV 1544
            E               NAERI KTNQSII F+SI+HK    R  NS NS D+S LSQAYV
Sbjct: 1130 ELTKKNLNKSIYDNEANAERIYKTNQSIISFISILHKYFHTRNPNSHNSCDISFLSQAYV 1189

Query: 1543 FFKLSQTQVINLNKYKLRSVFESHGRSFFLKNEIKNSFFRIQGISNSKLRHKNLPDSVMN 1364
            FF L  T++IN+N Y LRSVF  H   FFLKNEIK+SFF  QGI +SKL+HKN  +SV+N
Sbjct: 1190 FFNLLHTRIININIYNLRSVFHYHENFFFLKNEIKDSFFGAQGIFHSKLKHKNPLNSVIN 1249

Query: 1363 QWKNWLKVHH-QYDLPQSRWSRLVPQNWRNRIHEHRVAQNKDLTEYDSYEKTPLILYKKE 1187
            QW NWLK H+ QYDL +SRWSRLVPQ WRNRI E  +AQNKDLT+ D YEK+ LILYK++
Sbjct: 1250 QWTNWLKDHYYQYDLSKSRWSRLVPQKWRNRITECGIAQNKDLTKCDLYEKSRLILYKEQ 1309

Query: 1186 PIDVKDFLERNLXXXXXXXXKQNKYDLLSYKFLNYADKKESYIHG--SPFQANKKKAISY 1013
             +D    L++ +         Q +YDLLSY F+NYADKK+SYI+G  S FQ  K + IS 
Sbjct: 1310 QVDA---LKKKIRK-------QYRYDLLSYNFINYADKKDSYIYGYKSLFQVKKNQVISS 1359

Query: 1012 ---TRTKEFFD-----------RADAIIDMEKNLDRKYFDWMVINRKIPKPSVSNSSYLY 875
               T  KE FD             D I+DMEKNLDRKYFDWM INR+I   S+SN  + +
Sbjct: 1360 NYSTYKKELFDIIDNLFIKNYISEDVILDMEKNLDRKYFDWMGINREIQNRSISNPEFWF 1419

Query: 874  FLKLKRLYDAYKKNPWIMPIKSLFFQFYGNQ----------------------------K 779
            F K    Y+AY+ N  ++PIK LF  F  NQ                            K
Sbjct: 1420 FSKFVIFYNAYRGNSQVIPIKLLFLSFNVNQNVSENQNNITRKKKNESLELELETRNRAK 1479

Query: 778  AEYASRVDLNSSFSNQERDIER----LDNKKRAKSIER-----------DFLVRKYLGFH 644
            AEY    +L  S SNQE+DIE      D++K +K I++           +FL+R +L  H
Sbjct: 1480 AEYPDERNLELSISNQEKDIENDYVGSDSEKNSKGIKKKKDKNKMEAELNFLLRNFLILH 1539

Query: 643  LNYSTPLDEIMMNNIQLNYLLVGLQKTKKIMIDSIKKGELNLESLVMFPNQKDFTL---- 476
            LN++  L + + NN+++  LL+ L+  ++I I SI++GEL L+ ++M  +QK+  L    
Sbjct: 1540 LNWNNFLGQRIFNNVKVYCLLIRLKNLREITIASIQRGELGLD-IMMIQSQKNLILLGLR 1598

Query: 475  ---NNELLEKEMFFREPVRLPRKNNEQFLMYQTISLSLNHKNLPQMFQRNPEK------- 326
               NN+ ++KE+F  EPVRL RKNN+QF MYQT+ LSL  KN  +++ + PEK       
Sbjct: 1599 KKKNNKFMKKEIFVIEPVRLSRKNNKQFFMYQTMGLSLIQKNKRKIYHKYPEKIHVNKKN 1658

Query: 325  ------------SRKDKNHYDLLVPENILSTRRRRELRILLCFNPRNRNSVDKNKIFXXX 182
                         +K+K+++DLLVPENILS RRRRELRIL+C NP+N NS+ +N IF   
Sbjct: 1659 FDKYITRDQKITEKKEKDNFDLLVPENILSARRRRELRILICLNPKNINSMYRNTIFFNQ 1718

Query: 181  XXXXXXXXXXXKCCQVLAKNKDLDREKKKLMNLKFFLWPNYRLEDLACINRYWFDTHNGS 2
                           +  K K  +++KKKLMN K FLWP YRLEDLACINRYWF+THNGS
Sbjct: 1719 NKVKKGFPL------LTKKRKYFEKDKKKLMNFKIFLWPKYRLEDLACINRYWFNTHNGS 1772


>ref|YP_001381682.1| hypothetical chloroplast RF1 [Medicago truncatula]
            gi|404332297|gb|AFR59929.1| hypothetical chloroplast RF1
            [Medicago truncatula]
          Length = 1760

 Score =  673 bits (1736), Expect = 0.0
 Identities = 418/790 (52%), Positives = 503/790 (63%), Gaps = 50/790 (6%)
 Frame = -1

Query: 2221 TILKERRKWTIQSLLKSILFRFIKIDEIDEIGENKKDSTISKNNP------MIYESPVLI 2060
            T+LK+   W I+ +LKSILFRF KI  IDE+ E+KK STISKNN       +I ESPV +
Sbjct: 976  TMLKKIENWNIKRILKSILFRF-KI--IDELSESKKTSTISKNNSKIEVIEVIEESPVKM 1032

Query: 2059 QSISWTNSCSLTEKRIKDLNVKTKTIINEIEKMTKEKEGGVITSEKNLNPNKTTYDAKRL 1880
            +SI+WTNS S TEKRIKDLNVKTKTII +IE MT+EK+ G++TSE NLN NKTTYDAKRL
Sbjct: 1033 ESINWTNS-SFTEKRIKDLNVKTKTIIKQIETMTEEKKEGILTSEINLNSNKTTYDAKRL 1091

Query: 1879 ELQKNIFQILQRRNVRLTRKLYSFFPFLMERVYIDIFLSIISIPRTKVQLFLEXXXXXXX 1700
            ELQKN  QILQRR VRL RK YSFF   +E VYIDI L I SI R   Q FL+       
Sbjct: 1092 ELQKNNLQILQRRFVRLIRKSYSFFKIFIEGVYIDILLCISSIARIHRQRFLDFLESTDK 1151

Query: 1699 XXXXXXXXN---------AERIDKTNQSIIPFMSIIHKSRRIRKTNSPNSYDVSSLS--- 1556
                               ER +  N S+   +SI+ KS  I   NS NS+DVSSLS   
Sbjct: 1152 ILNVKKPIYDKKKKMEEMEERFE--NLSVSRLISILEKSENITNMNSQNSWDVSSLSSLS 1209

Query: 1555 QAYVFFKLSQTQVINLNKYKLRSVFESHGRSFFLKNEIKNSFFRIQGISNSKLRHKNLPD 1376
            Q YVF+KLSQ Q  N +K+K+RS+ ES GRSFFLKNEIK+ FFR+QG  NSKLRHK   D
Sbjct: 1210 QEYVFYKLSQIQFSNGSKFKIRSILESPGRSFFLKNEIKDYFFRMQGTYNSKLRHKKRSD 1269

Query: 1375 SVMNQWKNWLKVHHQYDLPQSRWSRLVPQNWRNRIHEHRVAQNKDLTEYDSYEKTPLILY 1196
            S+MN W NW KV +QYDLP+ RWSRLV QNWRNRI+EHRVAQNKDL EYDSYEK  LI +
Sbjct: 1270 SLMNPWTNWFKVLYQYDLPEKRWSRLVSQNWRNRINEHRVAQNKDLVEYDSYEKNQLI-W 1328

Query: 1195 KKEPIDVKDFLERNL--XXXXXXXXKQNKYDLLSYKFLNYADKKESYIHG--SPFQANKK 1028
            K+  +  K   E +L          KQ +YDL SY++LN+A+KK+S I+G  SP   NK 
Sbjct: 1329 KELILSKKQEQEGDLLKIEIKNKIKKQYRYDLFSYQYLNFANKKKSSIYGYRSP---NKN 1385

Query: 1027 KAISYT------RTKEFFDRADAIIDMEKNLDRKYFDWMVINRKIPKPSVSNSSYL---- 878
            +AISY          E +D  D   ++EKNLDRKYF+WM +N K  K S     +L    
Sbjct: 1386 QAISYNYNISIQNYLEEYDILDMEKNLEKNLDRKYFNWMGMNVKRKKTSRPKDKFLIPGF 1445

Query: 877  -YFLKLKRLYDAYKKNPWIMPIKSLFFQFYGNQ--KAEYASRVDLNSSFSNQERDIERLD 707
             +F KL +LY AYK NPWI+PIK    Q    +    EY + VD      +     +  D
Sbjct: 1446 WFFSKLSKLYCAYKMNPWILPIKFFVLQLDNLELTTEEYVNTVD--EDLKSVSYYYKGSD 1503

Query: 706  NKKRAK-SIERDFLVRKYLGFHLNYSTPLDEIMMNNIQLNYLLVGLQKTKKIMIDSIKKG 530
            +K R     ERDFL+ KYLGF+L+  +  +EI M+N  L  LL+ ++K  KI+I SIKK 
Sbjct: 1504 SKYRTDLKGERDFLLSKYLGFYLHCDSSDEEIGMDNTNLFCLLLRMKKFNKIVIMSIKKL 1563

Query: 529  ELNLESLVMFPNQKDFTL-----NNELLEKEMFFREPVRLPRKNNEQFLMYQTISLSLNH 365
            EL++E LV     KDF         +L E+ +FF EP+RLPRK +EQ L+YQTI L L H
Sbjct: 1564 ELDIEMLV-DSRTKDFCYTECRDTEDLKERLIFFIEPIRLPRKKHEQSLLYQTIRLPLIH 1622

Query: 364  KN-LPQMFQRNPEKSR--------KDKNHYDLLVPENILSTRRRRELRILLCFNPRNRNS 212
            K+   + +    +KSR        KDKN YDL VPEN+LSTRRRRELRIL CFNPRNRN+
Sbjct: 1623 KSKTRKSWSWKKKKSRVDQKITENKDKNLYDLFVPENLLSTRRRRELRILTCFNPRNRNT 1682

Query: 211  VDKNKIFXXXXXXXXXXXXXXKCCQVLAKNKDLDREKKKLMNLKFFLWPNYRLEDLACIN 32
            V +  I                  QVL KNKDLD E KKLMN K FLWPNYRLEDLACIN
Sbjct: 1683 VHRKTI-------NDNENQIKNVSQVLTKNKDLDSETKKLMNFKLFLWPNYRLEDLACIN 1735

Query: 31   RYWFDTHNGS 2
            RYWF+THNGS
Sbjct: 1736 RYWFNTHNGS 1745


>gb|AGV52559.1| hypothetical chloroplast RF1 (chloroplast) [Medicago truncatula f.
            tricycla]
          Length = 1756

 Score =  666 bits (1718), Expect = 0.0
 Identities = 417/796 (52%), Positives = 505/796 (63%), Gaps = 56/796 (7%)
 Frame = -1

Query: 2221 TILKERRKWTIQSLLKSILFRFIKIDE-----IDE-IGENKKDSTISKNNPMIYESPVLI 2060
            T+LK+   W I+ +LKSILFRF  IDE     IDE I E+KK STISKNN  I ESPV +
Sbjct: 966  TMLKKIENWNIKRILKSILFRFKIIDETIDETIDETISESKKTSTISKNNSKIEESPVKM 1025

Query: 2059 QSISWTNSCSLTEKRIKDLNVKTKTIINEIEKMTKEKEGGVITSEKNLNPNKTTYDAKRL 1880
            +SI+WTNS S TEKRIKDLNVKTKTII +IE MT+EK+ G++TSE NLN NKTTYDAKRL
Sbjct: 1026 ESINWTNS-SFTEKRIKDLNVKTKTIIKQIETMTEEKKEGILTSEINLNSNKTTYDAKRL 1084

Query: 1879 ELQKNIFQILQRRNVRLTRKLYSFFPFLMERVYIDIFLSIISIPRTKVQLFLEXXXXXXX 1700
            ELQKNI QILQRR VRL RK +SFF   +E VYIDI L I SI R   Q FL+       
Sbjct: 1085 ELQKNILQILQRRFVRLIRKSFSFFKIFIEGVYIDILLWISSIARIHGQRFLDFLESTDK 1144

Query: 1699 XXXXXXXXN------AERIDKTNQSIIPFMSIIHKSRRIRKTNSPNSYDVSSLS---QAY 1547
                            ER++  N SI   MSI+ KS  IR  NS NS+DVSSLS   Q Y
Sbjct: 1145 ILNVKKPIYDKKKKTEERVE--NLSISTLMSIVEKSENIRNMNSQNSWDVSSLSSLSQEY 1202

Query: 1546 VFFKLSQTQVINLNKYKLRSVFESHGRSFFLKNEIKNSFFRIQGISNSKLRHKNLPDSVM 1367
            VF+KLSQ Q+ N  K+K+RS+FES GRSFFLKNEIK+ FFRIQG  NSKLRHK  PDS+M
Sbjct: 1203 VFYKLSQIQLSNGYKFKIRSIFESPGRSFFLKNEIKDYFFRIQGTYNSKLRHKKRPDSLM 1262

Query: 1366 NQWKNWLKVHHQYDLPQSRWSRLVPQNWRNRIHEHRVAQNKDLTEY--DSYEKTPLILYK 1193
            N W NW KV +QYDLP+ RWSRLV + WRNRI+EHRVAQNKDL EY  DSYEK  LI +K
Sbjct: 1263 NPWTNWFKVLYQYDLPEKRWSRLVSKKWRNRINEHRVAQNKDLVEYVSDSYEKNQLI-WK 1321

Query: 1192 KEPIDVKDFLERNL--XXXXXXXXKQNKYDLLSYKFLNYADKKESYIHG--SPFQANKKK 1025
            +  +  K   E +L          KQ +YDL SY++L++A+KK+S I+G  SP Q NK +
Sbjct: 1322 ELILSKKQEQEGDLLKIEIKNKIKKQYRYDLFSYQYLHFANKKKSSIYGYRSP-QGNKNQ 1380

Query: 1024 AISYT------RTKEFFDRADAIIDMEKNLDRKYFDWM---VINRKIPKPSVSNSSYLYF 872
            AISY          E +D  D   +MEKNLDRKYF  +   +  +K  +P      + +F
Sbjct: 1381 AISYNYNISIQNYLEEYDILDMEKNMEKNLDRKYFHLIGMKIKGKKTSRPKFLIPGFWFF 1440

Query: 871  LKLKRLYDAYKKNPWIMPIKSLFFQFYGNQ--KAEYASRVDLNSSFSNQERDIERLDNKK 698
             KL + Y AYK NPWI+PIK    Q    +    EY + VD      +     +  D+K 
Sbjct: 1441 SKLSKFYCAYKMNPWILPIKFFVLQLDNLELTTEEYVNTVD--EDLKSVSYYYKGSDSKY 1498

Query: 697  RAK-SIERDFLVRKYLGFHLNYSTPLDEIMMNNIQLNYLLVGLQKTKKIMIDSIKKGELN 521
            R     ERDFL+ KYLGF+L+  +  +EI M+NI L  LL+ ++K KK +I SIKK EL+
Sbjct: 1499 RTDLKGERDFLLSKYLGFYLHCDSSDEEIGMDNINLFCLLIRMKKLKKFVIMSIKKLELD 1558

Query: 520  LESLVMFPNQKDFTL-----NNELLEKEMFFREPVRLPRKNNEQFLMYQTISLSLNHKNL 356
            +E +V+    KDF         +L E+ +FF EP+RLP K +EQ L+YQTI L L HK+ 
Sbjct: 1559 IE-MVVDSITKDFCYTECRDTEDLKERLIFFIEPIRLPTKKHEQSLLYQTIRLPLIHKSK 1617

Query: 355  P-------QMFQRNPEKSR--------KDKNHYDLLVPENILSTRRRRELRILLCFNPRN 221
                      +    +KSR        KDKN YDL VPEN+LSTRRRRELRIL CFNPRN
Sbjct: 1618 TLKSWSWGWSWSWKKKKSRVDQKITENKDKNLYDLFVPENLLSTRRRRELRILTCFNPRN 1677

Query: 220  ---RNSVDKNKIFXXXXXXXXXXXXXXKCCQVLAKNKDLDREKKKLMNLKFFLWPNYRLE 50
               R +++ N+                   QVLAKNKDLD E KKLMN K FLWPNYRLE
Sbjct: 1678 TVHRKTINDNE------------NQIKNVSQVLAKNKDLDSETKKLMNFKLFLWPNYRLE 1725

Query: 49   DLACINRYWFDTHNGS 2
            DLACINRYWF+THNGS
Sbjct: 1726 DLACINRYWFNTHNGS 1741