BLASTX nr result
ID: Stemona21_contig00037429
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Stemona21_contig00037429
(434 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EXB75595.1| Retrovirus-related Pol polyprotein from transposo... 65 1e-19
gb|AAP94586.1| putative retrotransposon RIRE1 poly protein [Zea ... 55 2e-09
gb|EXC16429.1| hypothetical protein L484_004440 [Morus notabilis] 65 9e-09
gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi] 64 3e-08
gb|AAT81746.1| integrase core domain containing protein [Oryza s... 54 4e-08
gb|AAT38766.2| Polyprotein, putative [Solanum demissum] 63 5e-08
gb|AAM22635.1|AF434192_2 Gag and Pol [Zea mays] 63 5e-08
ref|XP_004233808.1| PREDICTED: uncharacterized protein LOC101263... 62 8e-08
gb|ABA95859.1| retrotransposon protein, putative, Ty1-copia subc... 59 9e-08
emb|CAN82978.1| hypothetical protein VITISV_023328 [Vitis vinifera] 62 1e-07
emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera] 61 1e-07
gb|AAT69624.1| putative polyprotein [Oryza sativa Japonica Group] 58 2e-07
gb|ABA96132.1| retrotransposon protein, putative, Ty1-copia subc... 58 2e-07
gb|AAX96544.1| retrotransposon protein, putative, Ty1-copia sub-... 58 2e-07
emb|CAE05248.2| OSJNBb0115I09.10 [Oryza sativa Japonica Group] 58 2e-07
gb|ABA94371.1| retrotransposon protein, putative, Ty1-copia subc... 58 2e-07
gb|ABA91121.1| retrotransposon protein, putative, Ty1-copia subc... 58 2e-07
emb|CAH66193.1| OSIGBa0144J05.5 [Oryza sativa Indica Group] gi|1... 58 2e-07
gb|ABB47865.2| retrotransposon protein, putative, Ty1-copia subc... 58 2e-07
emb|CAD40519.1| OSJNBa0023J03.5 [Oryza sativa Japonica Group] 58 2e-07
>gb|EXB75595.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
notabilis]
Length = 440
Score = 65.5 bits (158), Expect(3) = 1e-19
Identities = 30/45 (66%), Positives = 38/45 (84%)
Frame = -3
Query: 150 KLNVLHVPKIRKNLVSVSLLCKNGFKVVLESDNLILSKNGMFVGR 16
KL + +VP IRKNLVS SL+CKNG K+VLE +N I+SKNG+FVG+
Sbjct: 219 KLTLNNVPDIRKNLVSASLMCKNGLKIVLEGNNCIVSKNGIFVGK 263
Score = 46.6 bits (109), Expect(3) = 1e-19
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = -2
Query: 247 QIGMISELSMATSIKTSDWWHD*GPTIHVCHDQT 146
QIGMI+E +MA S K+SDWW D TIHVC+D+T
Sbjct: 148 QIGMITETNMAAS-KSSDWWLDSSVTIHVCNDKT 180
Score = 30.0 bits (66), Expect(3) = 1e-19
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -1
Query: 377 CFHCGKKDPFIRDCRYQKGVXXXXXXXXXXXNMLEEKKENLVA 249
CF CGKK DCRY+K N +EEK E++ A
Sbjct: 104 CFFCGKKGHHQNDCRYKK----KKEVNTNNANAVEEKSEDICA 142
>gb|AAP94586.1| putative retrotransposon RIRE1 poly protein [Zea mays]
Length = 1309
Score = 55.5 bits (132), Expect(3) = 2e-09
Identities = 24/47 (51%), Positives = 37/47 (78%)
Frame = -3
Query: 156 MIKLNVLHVPKIRKNLVSVSLLCKNGFKVVLESDNLILSKNGMFVGR 16
++ +VL+VP + +NL+SVSLLC+ G K+V ES+ ++LSK G FVG+
Sbjct: 371 LVLKDVLYVPSMSRNLISVSLLCRQGLKLVFESNKVVLSKFGTFVGK 417
Score = 30.8 bits (68), Expect(3) = 2e-09
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 202 TSDWWHD*GPTIHVCHDQT 146
+ DWW D G T+H+C D++
Sbjct: 314 SDDWWMDSGATVHICADRS 332
Score = 20.4 bits (41), Expect(3) = 2e-09
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = -1
Query: 377 CFHCGKKDPFIRDCRYQKG 321
C+ CG R C+ +KG
Sbjct: 266 CYVCGVSGHTARRCKLRKG 284
>gb|EXC16429.1| hypothetical protein L484_004440 [Morus notabilis]
Length = 100
Score = 65.1 bits (157), Expect = 9e-09
Identities = 30/41 (73%), Positives = 35/41 (85%)
Frame = -3
Query: 144 NVLHVPKIRKNLVSVSLLCKNGFKVVLESDNLILSKNGMFV 22
NVLHVP IRKNLVS SL+CKNG K+VLE +N I+SKN +FV
Sbjct: 29 NVLHVPDIRKNLVSASLMCKNGLKIVLEGNNCIVSKNDIFV 69
>gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi]
Length = 701
Score = 63.5 bits (153), Expect = 3e-08
Identities = 30/43 (69%), Positives = 39/43 (90%)
Frame = -3
Query: 144 NVLHVPKIRKNLVSVSLLCKNGFKVVLESDNLILSKNGMFVGR 16
NVL+VP+IRKNLVS SLL K+GF++V ESD ++LSKNGM+VG+
Sbjct: 384 NVLYVPEIRKNLVSGSLLNKHGFRMVFESDMVVLSKNGMYVGK 426
>gb|AAT81746.1| integrase core domain containing protein [Oryza sativa Japonica
Group] gi|108708962|gb|ABF96757.1| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1232
Score = 53.9 bits (128), Expect(3) = 4e-08
Identities = 25/43 (58%), Positives = 33/43 (76%)
Frame = -3
Query: 144 NVLHVPKIRKNLVSVSLLCKNGFKVVLESDNLILSKNGMFVGR 16
NV HV I+KNLVS SLLC+ GF++V ES+ ++SK G FVG+
Sbjct: 427 NVQHVLSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGK 469
Score = 25.0 bits (53), Expect(3) = 4e-08
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 202 TSDWWHD*GPTIHV 161
+SDWW D G IHV
Sbjct: 378 SSDWWVDTGANIHV 391
Score = 23.1 bits (48), Expect(3) = 4e-08
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -1
Query: 377 CFHCGKKDPFIRDCRYQK 324
CF CGK + +DC +K
Sbjct: 330 CFVCGKSGHWAKDCPKRK 347
>gb|AAT38766.2| Polyprotein, putative [Solanum demissum]
Length = 1355
Score = 62.8 bits (151), Expect = 5e-08
Identities = 36/64 (56%), Positives = 44/64 (68%), Gaps = 3/64 (4%)
Frame = -3
Query: 198 QIGGTIKGLQFMC---VMIKLNVLHVPKIRKNLVSVSLLCKNGFKVVLESDNLILSKNGM 28
+I GT K + M V+ NVLHVP IRKNLV V+LL KNGFK VL SD ++SKN M
Sbjct: 407 RIAGTGKVMLKMTSGKVLTLNNVLHVPTIRKNLVYVALLVKNGFKCVLVSDKTVISKNEM 466
Query: 27 FVGR 16
F+G+
Sbjct: 467 FLGK 470
>gb|AAM22635.1|AF434192_2 Gag and Pol [Zea mays]
Length = 1264
Score = 62.8 bits (151), Expect = 5e-08
Identities = 28/43 (65%), Positives = 37/43 (86%)
Frame = -3
Query: 144 NVLHVPKIRKNLVSVSLLCKNGFKVVLESDNLILSKNGMFVGR 16
NV HVP I KNLVS +LLC++GFKVVLES+ L++SK+G F+G+
Sbjct: 320 NVHHVPSIHKNLVSGTLLCRDGFKVVLESNKLVVSKSGQFIGK 362
>ref|XP_004233808.1| PREDICTED: uncharacterized protein LOC101263787 [Solanum
lycopersicum]
Length = 2703
Score = 62.0 bits (149), Expect = 8e-08
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -3
Query: 147 LNVLHVPKIRKNLVSVSLLCKNGFKVVLESDNLILSKNGMFVG 19
++VLHVP IRKNLVS +LL K+GFK++ E+D ILSK GMFVG
Sbjct: 1104 IDVLHVPDIRKNLVSGTLLSKHGFKMIFEADKFILSKQGMFVG 1146
>gb|ABA95859.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 503
Score = 58.5 bits (140), Expect(2) = 9e-08
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = -3
Query: 144 NVLHVPKIRKNLVSVSLLCKNGFKVVLESDNLILSKNGMFVGR 16
NV HVP I+KNLVS SLLC+ GFK+V ES+ ++SK G F+G+
Sbjct: 372 NVQHVPSIKKNLVSGSLLCREGFKLVFESNKCVVSKYGTFIGK 414
Score = 23.1 bits (48), Expect(2) = 9e-08
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 196 DWWHD*GPTIHV 161
DWW D G IHV
Sbjct: 325 DWWVDTGANIHV 336
>emb|CAN82978.1| hypothetical protein VITISV_023328 [Vitis vinifera]
Length = 474
Score = 61.6 bits (148), Expect = 1e-07
Identities = 30/43 (69%), Positives = 35/43 (81%)
Frame = -3
Query: 144 NVLHVPKIRKNLVSVSLLCKNGFKVVLESDNLILSKNGMFVGR 16
+VLHVP IRKNLVS SLL KNGFK+V SD +L+KN MFVG+
Sbjct: 296 DVLHVPDIRKNLVSRSLLSKNGFKLVFVSDKFVLTKNEMFVGK 338
>emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]
Length = 1544
Score = 61.2 bits (147), Expect = 1e-07
Identities = 29/48 (60%), Positives = 36/48 (75%)
Frame = -3
Query: 162 CVMIKLNVLHVPKIRKNLVSVSLLCKNGFKVVLESDNLILSKNGMFVG 19
C + + NVLHVP I KNLVS S+L KNGFK+V ES+ + KNGM+VG
Sbjct: 233 CHLKEQNVLHVPDIGKNLVSGSMLSKNGFKLVFESNKFVFMKNGMYVG 280
>gb|AAT69624.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1401
Score = 57.8 bits (138), Expect(2) = 2e-07
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = -3
Query: 144 NVLHVPKIRKNLVSVSLLCKNGFKVVLESDNLILSKNGMFVGR 16
NV HVP I+KNLVS SLLC+ GF++V ES+ ++SK G FVG+
Sbjct: 493 NVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGK 535
Score = 23.1 bits (48), Expect(2) = 2e-07
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 196 DWWHD*GPTIHV 161
DWW D G IHV
Sbjct: 446 DWWVDTGANIHV 457
>gb|ABA96132.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1357
Score = 57.8 bits (138), Expect(2) = 2e-07
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = -3
Query: 144 NVLHVPKIRKNLVSVSLLCKNGFKVVLESDNLILSKNGMFVGR 16
NV HVP I+KNLVS SLLC+ GF++V ES+ ++SK G FVG+
Sbjct: 412 NVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGK 454
Score = 23.1 bits (48), Expect(2) = 2e-07
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 196 DWWHD*GPTIHV 161
DWW D G IHV
Sbjct: 365 DWWVDTGANIHV 376
>gb|AAX96544.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77550433|gb|ABA93230.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1321
Score = 57.8 bits (138), Expect(2) = 2e-07
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = -3
Query: 144 NVLHVPKIRKNLVSVSLLCKNGFKVVLESDNLILSKNGMFVGR 16
NV HVP I+KNLVS SLLC+ GF++V ES+ ++SK G FVG+
Sbjct: 486 NVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGK 528
Score = 23.1 bits (48), Expect(2) = 2e-07
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 196 DWWHD*GPTIHV 161
DWW D G IHV
Sbjct: 439 DWWVDTGANIHV 450
>emb|CAE05248.2| OSJNBb0115I09.10 [Oryza sativa Japonica Group]
Length = 1321
Score = 57.8 bits (138), Expect(2) = 2e-07
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = -3
Query: 144 NVLHVPKIRKNLVSVSLLCKNGFKVVLESDNLILSKNGMFVGR 16
NV HVP I+KNLVS SLLC+ GF++V ES+ ++SK G FVG+
Sbjct: 376 NVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGK 418
Score = 23.1 bits (48), Expect(2) = 2e-07
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 196 DWWHD*GPTIHV 161
DWW D G IHV
Sbjct: 329 DWWVDTGANIHV 340
>gb|ABA94371.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1239
Score = 57.8 bits (138), Expect(2) = 2e-07
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = -3
Query: 144 NVLHVPKIRKNLVSVSLLCKNGFKVVLESDNLILSKNGMFVGR 16
NV HVP I+KNLVS SLLC+ GF++V ES+ ++SK G FVG+
Sbjct: 427 NVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGK 469
Score = 23.1 bits (48), Expect(2) = 2e-07
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 196 DWWHD*GPTIHV 161
DWW D G IHV
Sbjct: 380 DWWVDTGANIHV 391
>gb|ABA91121.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1186
Score = 57.8 bits (138), Expect(2) = 2e-07
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = -3
Query: 144 NVLHVPKIRKNLVSVSLLCKNGFKVVLESDNLILSKNGMFVGR 16
NV HVP I+KNLVS SLLC+ GF++V ES+ ++SK G FVG+
Sbjct: 499 NVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGK 541
Score = 23.1 bits (48), Expect(2) = 2e-07
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 196 DWWHD*GPTIHV 161
DWW D G IHV
Sbjct: 452 DWWVDTGANIHV 463
>emb|CAH66193.1| OSIGBa0144J05.5 [Oryza sativa Indica Group]
gi|116309103|emb|CAH66209.1| OSIGBa0096F13.4 [Oryza
sativa Indica Group]
Length = 1147
Score = 57.8 bits (138), Expect(2) = 2e-07
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = -3
Query: 144 NVLHVPKIRKNLVSVSLLCKNGFKVVLESDNLILSKNGMFVGR 16
NV HVP I+KNLVS SLLC+ GF++V ES+ ++SK G FVG+
Sbjct: 495 NVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGK 537
Score = 23.1 bits (48), Expect(2) = 2e-07
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 196 DWWHD*GPTIHV 161
DWW D G IHV
Sbjct: 448 DWWVDTGANIHV 459
>gb|ABB47865.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1126
Score = 57.8 bits (138), Expect(2) = 2e-07
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = -3
Query: 144 NVLHVPKIRKNLVSVSLLCKNGFKVVLESDNLILSKNGMFVGR 16
NV HVP I+KNLVS SLLC+ GF++V ES+ ++SK G FVG+
Sbjct: 311 NVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGK 353
Score = 23.1 bits (48), Expect(2) = 2e-07
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 196 DWWHD*GPTIHV 161
DWW D G IHV
Sbjct: 264 DWWVDTGANIHV 275
>emb|CAD40519.1| OSJNBa0023J03.5 [Oryza sativa Japonica Group]
Length = 1108
Score = 57.8 bits (138), Expect(2) = 2e-07
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = -3
Query: 144 NVLHVPKIRKNLVSVSLLCKNGFKVVLESDNLILSKNGMFVGR 16
NV HVP I+KNLVS SLLC+ GF++V ES+ ++SK G FVG+
Sbjct: 495 NVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGK 537
Score = 23.1 bits (48), Expect(2) = 2e-07
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 196 DWWHD*GPTIHV 161
DWW D G IHV
Sbjct: 448 DWWVDTGANIHV 459