BLASTX nr result
ID: Stemona21_contig00034697
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Stemona21_contig00034697
(690 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006486503.1| PREDICTED: uncharacterized protein LOC102607... 128 4e-46
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata] 132 7e-45
ref|XP_006488688.1| PREDICTED: uncharacterized protein LOC102623... 119 1e-43
gb|ABA96677.1| retrotransposon protein, putative, Ty3-gypsy subc... 112 5e-43
ref|NP_001068285.2| Os11g0617500 [Oryza sativa Japonica Group] g... 108 2e-42
gb|ABG22552.1| retrotransposon protein, putative, unclassified, ... 108 2e-42
gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana] 127 2e-41
gb|ABA97615.1| retrotransposon protein, putative, unclassified [... 117 4e-41
gb|AAL31077.1|AC091749_6 putative polyprotein [Oryza sativa Japo... 116 5e-41
gb|AAU10841.1| putative polyprotein [Oryza sativa Japonica Group] 108 2e-40
gb|ABF97034.1| retrotransposon protein, putative, Ty3-gypsy subc... 115 2e-40
gb|AAP44597.1| putative polyprotein [Oryza sativa Japonica Group] 115 2e-40
emb|CAD39384.2| OSJNBb0016B03.14 [Oryza sativa Japonica Group] 117 2e-40
gb|ABA92927.2| retrotransposon protein, putative, Ty3-gypsy subc... 115 3e-40
gb|AAP53331.2| retrotransposon protein, putative, Ty3-gypsy subc... 117 4e-40
gb|AAL58173.1|AC093181_19 putative polyprotein [Oryza sativa Jap... 117 4e-40
gb|ABA96941.1| retrotransposon protein, putative, unclassified [... 117 5e-40
gb|AAD22505.1| putative retroelement gag/pol polyprotein [Arabid... 130 7e-40
emb|CAE05579.3| OSJNBa0032N05.7 [Oryza sativa Japonica Group] 111 1e-39
gb|AAQ56331.1| putative polyprotein [Oryza sativa Japonica Group] 117 2e-39
>ref|XP_006486503.1| PREDICTED: uncharacterized protein LOC102607673 [Citrus sinensis]
Length = 1866
Score = 128 bits (321), Expect(3) = 4e-46
Identities = 61/119 (51%), Positives = 81/119 (68%)
Frame = -2
Query: 689 SDRCLPFLDTLRGGKAFKWNEVCEEAFLQLKEYLSSPPLLSKPEVGEELCLYLAVTPTTL 510
+D+C PF ++ GK +W CEEAF QLKEYL+ PLLS P G++L LYLA++
Sbjct: 1108 TDKCHPFFQIIKKGKKMEWTPECEEAFGQLKEYLARAPLLSTPREGDQLLLYLAISKRAT 1167
Query: 509 SGVLTRDDEHEL*PIYYISKIFRGAEERYPRFKKMAFALVTASRMLRPYFQAHTVVVVS 333
S VL R++E + P+YY SK AE RYP +K A AL+TA+R LRPYFQAH +VV++
Sbjct: 1168 SSVLVREEEGKQHPVYYTSKALVDAETRYPPMEKWALALITAARKLRPYFQAHQIVVMT 1226
Score = 66.6 bits (161), Expect(3) = 4e-46
Identities = 38/75 (50%), Positives = 46/75 (61%), Gaps = 10/75 (13%)
Frame = -1
Query: 330 QPLRQVLFKLDLSRRLTKWAVELSEYDIQYRSRTAIKAQALADFIVE-FPPASAPPTQQP 154
QPLRQVL K D S RL KW+VELSE+D+ YR R A KAQAL DF+V+ P +QP
Sbjct: 1228 QPLRQVLQKPDASGRLVKWSVELSEFDLSYRPRGATKAQALVDFMVDCVEPGEEVQEEQP 1287
Query: 153 ---------WVLYVD 136
W++ VD
Sbjct: 1288 EEQEDSKGTWLVMVD 1302
Score = 37.7 bits (86), Expect(3) = 4e-46
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = -2
Query: 89 IVSSPYGTKAKYA*RFQFSATNNVAEYEA 3
++ SP GT+ YA +F+F TNN AEYEA
Sbjct: 1315 VIRSPEGTEITYAVKFEFQLTNNQAEYEA 1343
>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
Length = 1103
Score = 132 bits (333), Expect(3) = 7e-45
Identities = 64/119 (53%), Positives = 86/119 (72%)
Frame = -2
Query: 689 SDRCLPFLDTLRGGKAFKWNEVCEEAFLQLKEYLSSPPLLSKPEVGEELCLYLAVTPTTL 510
+D+ LPF L+G K F W+E CEEAF QLK YL++PP+LSKPEV E+L LY++V+ +
Sbjct: 270 TDKSLPFYQILKGNKGFLWDEKCEEAFGQLKAYLTTPPILSKPEVDEKLYLYVSVSNHAV 329
Query: 509 SGVLTRDDEHEL*PIYYISKIFRGAEERYPRFKKMAFALVTASRMLRPYFQAHTVVVVS 333
SGVL R+D E PIYY+SK E RY +K+A A+VT++R LRPYFQ+H V V++
Sbjct: 330 SGVLVREDRGEQKPIYYVSKSMTDPETRYTMMEKLALAVVTSARKLRPYFQSHPVQVLT 388
Score = 71.2 bits (173), Expect(3) = 7e-45
Identities = 37/67 (55%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Frame = -1
Query: 330 QPLRQVLFKLDLSRRLTKWAVELSEYDIQYRSRTAIKAQALADFIVEFP-PASAP-PTQQ 157
QPLR +L S RL KWAVELSEYDI+++SR ++KAQ LADF+ E P P + P Q
Sbjct: 390 QPLRTILHSPSQSGRLAKWAVELSEYDIEFKSRISMKAQVLADFLTELPIPGTIERPENQ 449
Query: 156 PWVLYVD 136
W L+VD
Sbjct: 450 TWKLHVD 456
Score = 24.3 bits (51), Expect(3) = 7e-45
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 86 VSSPYGTKAKYA*RFQFSATNNVAEYEA 3
+ SP + + R F A+NN AEYEA
Sbjct: 470 LESPTSEILEQSFRLLFDASNNEAEYEA 497
>ref|XP_006488688.1| PREDICTED: uncharacterized protein LOC102623105 [Citrus sinensis]
Length = 1407
Score = 119 bits (297), Expect(3) = 1e-43
Identities = 61/119 (51%), Positives = 75/119 (63%)
Frame = -2
Query: 689 SDRCLPFLDTLRGGKAFKWNEVCEEAFLQLKEYLSSPPLLSKPEVGEELCLYLAVTPTTL 510
+D+C PF +R GK +W CEEAF LK+YL PLLS P G++L LYLAV+
Sbjct: 1121 TDKCQPFFQVMRRGKKTEWTPGCEEAFRNLKQYLQQAPLLSTPRDGDKLNLYLAVSDRAA 1180
Query: 509 SGVLTRDDEHEL*PIYYISKIFRGAEERYPRFKKMAFALVTASRMLRPYFQAHTVVVVS 333
S VL R++E PIYY SK AE RYP +K A ALV A+R LRPYFQA V V++
Sbjct: 1181 SSVLVREEEGVQYPIYYTSKALLDAETRYPPLEKWALALVVAARKLRPYFQAFPVSVIT 1239
Score = 71.2 bits (173), Expect(3) = 1e-43
Identities = 33/48 (68%), Positives = 39/48 (81%)
Frame = -1
Query: 330 QPLRQVLFKLDLSRRLTKWAVELSEYDIQYRSRTAIKAQALADFIVEF 187
QPLRQ+L K D S RL KWAVELSE+D+ Y+ R AIKAQA+ADF+ EF
Sbjct: 1241 QPLRQILHKPDASGRLVKWAVELSEFDMDYKPRAAIKAQAMADFVAEF 1288
Score = 33.9 bits (76), Expect(3) = 1e-43
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -2
Query: 89 IVSSPYGTKAKYA*RFQFSATNNVAEYEA 3
++ P G + YA + +F+ATNN AEYEA
Sbjct: 1328 VLEGPEGEEISYAVKLEFAATNNQAEYEA 1356
>gb|ABA96677.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1412
Score = 112 bits (280), Expect(3) = 5e-43
Identities = 54/117 (46%), Positives = 76/117 (64%)
Frame = -2
Query: 689 SDRCLPFLDTLRGGKAFKWNEVCEEAFLQLKEYLSSPPLLSKPEVGEELCLYLAVTPTTL 510
++R LPF TLRG F W C+ AF +LK+YL SPP L P G +L LYLA +P +
Sbjct: 705 AERGLPFFKTLRGAGKFSWTPECQAAFDELKQYLQSPPDLVSPAPGSDLLLYLAASPVAV 764
Query: 509 SGVLTRDDEHEL*PIYYISKIFRGAEERYPRFKKMAFALVTASRMLRPYFQAHTVVV 339
+ +L ++ E P+Y++S+ +GA+ RY +K+A+ALV ASR L+ YFQAH V V
Sbjct: 765 NAILIQETESGQKPVYFVSEALQGAKIRYIEMEKLAYALVMASRKLKHYFQAHKVTV 821
Score = 73.6 bits (179), Expect(3) = 5e-43
Identities = 35/67 (52%), Positives = 49/67 (73%), Gaps = 3/67 (4%)
Frame = -1
Query: 327 PLRQVLFKLDLSRRLTKWAVELSEYDIQYRSRTAIKAQALADFIVEFPPASAP---PTQQ 157
PL +VL +++ RL+KWA ELS +D+ + +RTAIK+Q LADF+ E+ PA AP P +Q
Sbjct: 826 PLGEVLRGKEITGRLSKWAAELSPFDLHFVARTAIKSQILADFVAEWTPAFAPKPEPAKQ 885
Query: 156 PWVLYVD 136
PWV+Y D
Sbjct: 886 PWVMYSD 892
Score = 36.2 bits (82), Expect(3) = 5e-43
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -2
Query: 89 IVSSPYGTKAKYA*RFQFSATNNVAEYEA 3
+V+ P G +YA R QF TNN AEYEA
Sbjct: 905 VVAPPGGVPIRYAARLQFDTTNNTAEYEA 933
>ref|NP_001068285.2| Os11g0617500 [Oryza sativa Japonica Group]
gi|255680267|dbj|BAF28648.2| Os11g0617500, partial
[Oryza sativa Japonica Group]
Length = 627
Score = 108 bits (271), Expect(3) = 2e-42
Identities = 55/119 (46%), Positives = 75/119 (63%)
Frame = -2
Query: 689 SDRCLPFLDTLRGGKAFKWNEVCEEAFLQLKEYLSSPPLLSKPEVGEELCLYLAVTPTTL 510
++R LPF TLRG + F W C+ AF +LK+YL SPP L G EL LYLA +P +
Sbjct: 311 AERGLPFFKTLRGVEKFHWTPECQAAFGELKQYLQSPPALISLAPGSELLLYLAASPVAV 370
Query: 509 SGVLTRDDEHEL*PIYYISKIFRGAEERYPRFKKMAFALVTASRMLRPYFQAHTVVVVS 333
S L ++ + P+Y+ISK +GA+ RY +K+A+ALV AS L+ YFQ H V+V S
Sbjct: 371 SAALVQEIDSGQKPVYFISKALQGAKTRYIEMEKLAYALVMASCKLKHYFQTHKVIVPS 429
Score = 74.7 bits (182), Expect(3) = 2e-42
Identities = 34/67 (50%), Positives = 50/67 (74%), Gaps = 3/67 (4%)
Frame = -1
Query: 327 PLRQVLFKLDLSRRLTKWAVELSEYDIQYRSRTAIKAQALADFIVEFPPASAP---PTQQ 157
PL ++L+ +++ RL+KWA ELS +D+ + +RTAIK+Q LADF+ E+ PA AP P +Q
Sbjct: 432 PLGEILWGKEVTGRLSKWAAELSPFDLHFVARTAIKSQVLADFVAEWTPALAPEPEPVKQ 491
Query: 156 PWVLYVD 136
PWV+Y D
Sbjct: 492 PWVMYSD 498
Score = 36.2 bits (82), Expect(3) = 2e-42
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -2
Query: 89 IVSSPYGTKAKYA*RFQFSATNNVAEYEA 3
++ SP G +YA R QF TNN AEYEA
Sbjct: 511 VLISPSGVPIRYAARLQFDTTNNAAEYEA 539
>gb|ABG22552.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
Length = 612
Score = 108 bits (271), Expect(3) = 2e-42
Identities = 55/119 (46%), Positives = 75/119 (63%)
Frame = -2
Query: 689 SDRCLPFLDTLRGGKAFKWNEVCEEAFLQLKEYLSSPPLLSKPEVGEELCLYLAVTPTTL 510
++R LPF TLRG + F W C+ AF +LK+YL SPP L G EL LYLA +P +
Sbjct: 296 AERGLPFFKTLRGVEKFHWTPECQAAFGELKQYLQSPPALISLAPGSELLLYLAASPVAV 355
Query: 509 SGVLTRDDEHEL*PIYYISKIFRGAEERYPRFKKMAFALVTASRMLRPYFQAHTVVVVS 333
S L ++ + P+Y+ISK +GA+ RY +K+A+ALV AS L+ YFQ H V+V S
Sbjct: 356 SAALVQEIDSGQKPVYFISKALQGAKTRYIEMEKLAYALVMASCKLKHYFQTHKVIVPS 414
Score = 74.7 bits (182), Expect(3) = 2e-42
Identities = 34/67 (50%), Positives = 50/67 (74%), Gaps = 3/67 (4%)
Frame = -1
Query: 327 PLRQVLFKLDLSRRLTKWAVELSEYDIQYRSRTAIKAQALADFIVEFPPASAP---PTQQ 157
PL ++L+ +++ RL+KWA ELS +D+ + +RTAIK+Q LADF+ E+ PA AP P +Q
Sbjct: 417 PLGEILWGKEVTGRLSKWAAELSPFDLHFVARTAIKSQVLADFVAEWTPALAPEPEPVKQ 476
Query: 156 PWVLYVD 136
PWV+Y D
Sbjct: 477 PWVMYSD 483
Score = 36.2 bits (82), Expect(3) = 2e-42
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -2
Query: 89 IVSSPYGTKAKYA*RFQFSATNNVAEYEA 3
++ SP G +YA R QF TNN AEYEA
Sbjct: 496 VLISPSGVPIRYAARLQFDTTNNAAEYEA 524
>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
Length = 1838
Score = 127 bits (318), Expect(2) = 2e-41
Identities = 62/119 (52%), Positives = 85/119 (71%)
Frame = -2
Query: 689 SDRCLPFLDTLRGGKAFKWNEVCEEAFLQLKEYLSSPPLLSKPEVGEELCLYLAVTPTTL 510
+D+CLPF + L+ F W++ EEAF +LK+YLS+PP+L KPEVGE L LY+AV+ +
Sbjct: 1073 TDKCLPFYNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVGETLYLYIAVSDHAV 1132
Query: 509 SGVLTRDDEHEL*PIYYISKIFRGAEERYPRFKKMAFALVTASRMLRPYFQAHTVVVVS 333
S VL R+D E PI+Y SK AE RYP +K A A+VT++R LRPYFQ+HT+ V++
Sbjct: 1133 SSVLVREDRGEQRPIFYTSKSLVEAETRYPVIEKAALAVVTSARKLRPYFQSHTIAVLT 1191
Score = 69.3 bits (168), Expect(2) = 2e-41
Identities = 37/70 (52%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Frame = -1
Query: 330 QPLRQVLFKLDLSRRLTKWAVELSEYDIQYRSRTAIKAQALADFIVEFPPASAPPT---- 163
QPLR L S R+TKWAVELSEYDI +R R A+K+Q LADF++E P SA
Sbjct: 1193 QPLRVALHSPSQSGRMTKWAVELSEYDIDFRPRPAMKSQVLADFLIELPLQSAERAVSGN 1252
Query: 162 -QQPWVLYVD 136
+ W LYVD
Sbjct: 1253 RGEEWSLYVD 1262
>gb|ABA97615.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 827
Score = 117 bits (294), Expect(3) = 4e-41
Identities = 57/119 (47%), Positives = 78/119 (65%)
Frame = -2
Query: 689 SDRCLPFLDTLRGGKAFKWNEVCEEAFLQLKEYLSSPPLLSKPEVGEELCLYLAVTPTTL 510
++R LPF TLRG F W C+ AF +LK+YL SPP L P +G EL LYLA +P +
Sbjct: 540 AERGLPFFKTLRGMGKFSWTPECQAAFDELKQYLQSPPALISPTLGSELLLYLAASPVAV 599
Query: 509 SGVLTRDDEHEL*PIYYISKIFRGAEERYPRFKKMAFALVTASRMLRPYFQAHTVVVVS 333
S L ++ E P+Y++S+ +GA+ RY +K+A+ALV ASR L+ YFQAH V+V S
Sbjct: 600 SAALVQETEFGQKPVYFVSEALQGAKARYIEMEKLAYALVMASRKLKHYFQAHKVIVPS 658
Score = 65.9 bits (159), Expect(3) = 4e-41
Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Frame = -1
Query: 327 PLRQVLFKLDLSRRLTKWAVELSEYDIQYRSRTAIKAQALADFIVEFPP--ASAP-PTQQ 157
PL ++L ++S RL+KWA ELS +D+ + +RTA+K+Q L DF+ E+ P AS P P +Q
Sbjct: 661 PLGEILRGKEISGRLSKWAAELSPFDLHFVARTAVKSQVLTDFVAEWTPVFASEPEPVEQ 720
Query: 156 PWVLYVD 136
PWV+ D
Sbjct: 721 PWVMCSD 727
Score = 32.0 bits (71), Expect(3) = 4e-41
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = -2
Query: 89 IVSSPYGTKAKYA*RFQFSATNNVAEYEA 3
I+ SP YA R QF+ TNN AEYEA
Sbjct: 740 ILISPNRIPVWYAARLQFNTTNNAAEYEA 768
>gb|AAL31077.1|AC091749_6 putative polyprotein [Oryza sativa Japonica Group]
gi|22655740|gb|AAN04157.1| Putative polyprotein [Oryza
sativa Japonica Group] gi|31431207|gb|AAP53022.1|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1265
Score = 116 bits (290), Expect(3) = 5e-41
Identities = 56/119 (47%), Positives = 77/119 (64%)
Frame = -2
Query: 689 SDRCLPFLDTLRGGKAFKWNEVCEEAFLQLKEYLSSPPLLSKPEVGEELCLYLAVTPTTL 510
++R LPF TLRG F W C+ AF +LK+YL SPP L P G EL LYLA +P +
Sbjct: 513 AERGLPFFKTLRGAGKFNWTPECQAAFDELKQYLQSPPALISPPPGSELLLYLAASPVAV 572
Query: 509 SGVLTRDDEHEL*PIYYISKIFRGAEERYPRFKKMAFALVTASRMLRPYFQAHTVVVVS 333
S L ++ + P+Y++S+ +GA+ RY +K+A+ALV ASR L+ YFQAH V+V S
Sbjct: 573 SAALVQETKFGQKPVYFVSEALQGAKTRYIEMEKLAYALVMASRKLKHYFQAHKVIVPS 631
Score = 62.8 bits (151), Expect(3) = 5e-41
Identities = 30/67 (44%), Positives = 46/67 (68%), Gaps = 3/67 (4%)
Frame = -1
Query: 327 PLRQVLFKLDLSRRLTKWAVELSEYDIQYRSRTAIKAQALADFIVEFPPASAP---PTQQ 157
PL ++L +++ RL+KWA ELS +D+ + +R+AIK+Q LADF+ E+ P AP P +Q
Sbjct: 634 PLGEILRGKEVTGRLSKWAAELSPFDLHFVARSAIKSQVLADFVAEWTPVLAPDPEPAEQ 693
Query: 156 PWVLYVD 136
WV+ D
Sbjct: 694 FWVMCSD 700
Score = 36.2 bits (82), Expect(3) = 5e-41
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -2
Query: 89 IVSSPYGTKAKYA*RFQFSATNNVAEYEA 3
++ SP G +YA R QF TNN AEYEA
Sbjct: 713 VLFSPNGVPIRYAARLQFDTTNNAAEYEA 741
>gb|AAU10841.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1528
Score = 108 bits (271), Expect(3) = 2e-40
Identities = 54/119 (45%), Positives = 75/119 (63%)
Frame = -2
Query: 689 SDRCLPFLDTLRGGKAFKWNEVCEEAFLQLKEYLSSPPLLSKPEVGEELCLYLAVTPTTL 510
++R LPF TLRG F W C+ AF +LK+YL S P L G EL LYLA P +
Sbjct: 895 AERGLPFFKTLRGAGKFNWTPECQAAFNELKQYLQSRPALISAASGSELLLYLAALPVAV 954
Query: 509 SGVLTRDDEHEL*PIYYISKIFRGAEERYPRFKKMAFALVTASRMLRPYFQAHTVVVVS 333
S L ++ + PIY++S+ +GA+ RY + +K+A+ALV ASR ++ YFQAH V+V S
Sbjct: 955 SAALFQETDSGQKPIYFVSEALQGAKTRYIKMEKLAYALVMASRKVKHYFQAHKVIVPS 1013
Score = 67.4 bits (163), Expect(3) = 2e-40
Identities = 30/67 (44%), Positives = 48/67 (71%), Gaps = 3/67 (4%)
Frame = -1
Query: 327 PLRQVLFKLDLSRRLTKWAVELSEYDIQYRSRTAIKAQALADFIVEFPPASAP---PTQQ 157
PL ++L+ +++ RL+KWA ELS ++ + +RTA+K+Q LA+F+ E+ A AP P +Q
Sbjct: 1016 PLGEILWGKEVTGRLSKWAAELSPFNFHFVARTAVKSQVLANFVAEWTSAFAPDPEPVEQ 1075
Query: 156 PWVLYVD 136
PWV+Y D
Sbjct: 1076 PWVMYFD 1082
Score = 37.4 bits (85), Expect(3) = 2e-40
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = -2
Query: 89 IVSSPYGTKAKYA*RFQFSATNNVAEYEA 3
+++SP G +YA R QF TNN AEYEA
Sbjct: 1095 VLTSPNGAPIRYAARLQFDTTNNAAEYEA 1123
>gb|ABF97034.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1908
Score = 115 bits (288), Expect(3) = 2e-40
Identities = 56/119 (47%), Positives = 77/119 (64%)
Frame = -2
Query: 689 SDRCLPFLDTLRGGKAFKWNEVCEEAFLQLKEYLSSPPLLSKPEVGEELCLYLAVTPTTL 510
++R LPF TLRG F W C+ AF +LK+YL SPP L P G EL LYLA +P +
Sbjct: 1157 AERGLPFFKTLRGAGKFNWTPECQAAFDELKQYLQSPPALISPPPGSELLLYLAASPVAI 1216
Query: 509 SGVLTRDDEHEL*PIYYISKIFRGAEERYPRFKKMAFALVTASRMLRPYFQAHTVVVVS 333
S L ++ E P+Y++S+ +GA+ RY +K+A+ALV ASR L+ YFQA+ V+V S
Sbjct: 1217 SAALVQETESGQKPVYFVSEALQGAKTRYIEMEKLAYALVMASRKLKHYFQANKVIVPS 1275
Score = 60.1 bits (144), Expect(3) = 2e-40
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Frame = -1
Query: 327 PLRQVLFKLDLSRRLTKWAVELSEYDIQYRSRTAIKAQALADFIVEFPPASAP---PTQQ 157
PL ++L +++ RL+KWA ELS +D+ + + +AIK+Q LADF+ E+ P AP P +Q
Sbjct: 1278 PLGEILRGKEVTGRLSKWAAELSPFDLYFVAHSAIKSQVLADFVAEWTPILAPDPEPAEQ 1337
Query: 156 PWVLYVD 136
WV+ D
Sbjct: 1338 FWVMCSD 1344
Score = 37.7 bits (86), Expect(3) = 2e-40
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = -2
Query: 89 IVSSPYGTKAKYA*RFQFSATNNVAEYEA 3
++ SP G +YA R QF TNNVAEYEA
Sbjct: 1357 VLFSPNGVPIRYAARLQFDTTNNVAEYEA 1385
>gb|AAP44597.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1862
Score = 115 bits (288), Expect(3) = 2e-40
Identities = 56/119 (47%), Positives = 77/119 (64%)
Frame = -2
Query: 689 SDRCLPFLDTLRGGKAFKWNEVCEEAFLQLKEYLSSPPLLSKPEVGEELCLYLAVTPTTL 510
++R LPF TLRG F W C+ AF +LK+YL SPP L P G EL LYLA +P +
Sbjct: 1111 AERGLPFFKTLRGAGKFNWTPECQAAFDELKQYLQSPPALISPPPGSELLLYLAASPVAI 1170
Query: 509 SGVLTRDDEHEL*PIYYISKIFRGAEERYPRFKKMAFALVTASRMLRPYFQAHTVVVVS 333
S L ++ E P+Y++S+ +GA+ RY +K+A+ALV ASR L+ YFQA+ V+V S
Sbjct: 1171 SAALVQETESGQKPVYFVSEALQGAKTRYIEMEKLAYALVMASRKLKHYFQANKVIVPS 1229
Score = 60.1 bits (144), Expect(3) = 2e-40
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Frame = -1
Query: 327 PLRQVLFKLDLSRRLTKWAVELSEYDIQYRSRTAIKAQALADFIVEFPPASAP---PTQQ 157
PL ++L +++ RL+KWA ELS +D+ + + +AIK+Q LADF+ E+ P AP P +Q
Sbjct: 1232 PLGEILRGKEVTGRLSKWAAELSPFDLYFVAHSAIKSQVLADFVAEWTPILAPDPEPAEQ 1291
Query: 156 PWVLYVD 136
WV+ D
Sbjct: 1292 FWVMCSD 1298
Score = 37.7 bits (86), Expect(3) = 2e-40
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = -2
Query: 89 IVSSPYGTKAKYA*RFQFSATNNVAEYEA 3
++ SP G +YA R QF TNNVAEYEA
Sbjct: 1311 VLFSPNGVPIRYAARLQFDTTNNVAEYEA 1339
>emb|CAD39384.2| OSJNBb0016B03.14 [Oryza sativa Japonica Group]
Length = 1323
Score = 117 bits (292), Expect(3) = 2e-40
Identities = 57/115 (49%), Positives = 75/115 (65%)
Frame = -2
Query: 683 RCLPFLDTLRGGKAFKWNEVCEEAFLQLKEYLSSPPLLSKPEVGEELCLYLAVTPTTLSG 504
R LPF TLRG F W C+EAF +LK+YL SPP L P G EL LYLA +P +S
Sbjct: 622 RGLPFFKTLRGAGKFNWTPECQEAFDELKQYLQSPPALISPTPGSELLLYLAASPVAVSA 681
Query: 503 VLTRDDEHEL*PIYYISKIFRGAEERYPRFKKMAFALVTASRMLRPYFQAHTVVV 339
L ++ + P+Y+IS+ +GA+ RY +K+A+ALV ASR L+ YFQAH V+V
Sbjct: 682 ALVQETKFGQKPVYFISEALQGAKTRYIEMEKLAYALVMASRKLKHYFQAHKVIV 736
Score = 59.7 bits (143), Expect(3) = 2e-40
Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Frame = -1
Query: 327 PLRQVLFKLDLSRRLTKWAVELSEYDIQYRSRTAIKAQALADFIVEFPPASAPPT---QQ 157
PL ++L +++ RL+KWA ELS +D+ + +RTAIK+Q LADF+ E+ AP T +Q
Sbjct: 741 PLGEILRGKEVTGRLSKWAAELSPFDLHFVARTAIKSQVLADFVAEWTLVFAPETELVEQ 800
Query: 156 PWVLYVD 136
WV+ D
Sbjct: 801 LWVMSSD 807
Score = 36.6 bits (83), Expect(3) = 2e-40
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = -2
Query: 89 IVSSPYGTKAKYA*RFQFSATNNVAEYEA 3
++ SP G +YA R QF+ TNN AEYEA
Sbjct: 820 VLISPNGVPIRYAARLQFNTTNNAAEYEA 848
>gb|ABA92927.2| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 1590
Score = 115 bits (287), Expect(3) = 3e-40
Identities = 56/121 (46%), Positives = 77/121 (63%)
Frame = -2
Query: 689 SDRCLPFLDTLRGGKAFKWNEVCEEAFLQLKEYLSSPPLLSKPEVGEELCLYLAVTPTTL 510
++R LPF TLRG F W C+ AF +LK+YL SPP L P +G EL LYLA +P +
Sbjct: 1063 AERALPFFKTLRGTGKFNWTPECQAAFDELKQYLQSPPALISPPLGSELLLYLAASPVAV 1122
Query: 509 SGVLTRDDEHEL*PIYYISKIFRGAEERYPRFKKMAFALVTASRMLRPYFQAHTVVVVSV 330
S L ++ E P+Y++S+ +GA+ RY +K+A+ALV ASR L+ YFQAH V +
Sbjct: 1123 SVALVQETEFGQKPVYFVSEALQGAKTRYTEMEKLAYALVMASRKLKHYFQAHKEVTGRL 1182
Query: 329 S 327
S
Sbjct: 1183 S 1183
Score = 61.2 bits (147), Expect(3) = 3e-40
Identities = 28/58 (48%), Positives = 42/58 (72%), Gaps = 3/58 (5%)
Frame = -1
Query: 300 DLSRRLTKWAVELSEYDIQYRSRTAIKAQALADFIVEFPPASAP---PTQQPWVLYVD 136
+++ RL+KWA ELS +D+ + +R+AIK+Q LADF+ E+ P AP P +Q WV+Y D
Sbjct: 1177 EVTGRLSKWAAELSLFDLHFVARSAIKSQVLADFVAEWTPVLAPDTKPAEQFWVMYSD 1234
Score = 36.2 bits (82), Expect(3) = 3e-40
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -2
Query: 89 IVSSPYGTKAKYA*RFQFSATNNVAEYEA 3
++ SP G +YA R QF TNN AEYEA
Sbjct: 1247 VLFSPNGVPIRYAARLQFDTTNNAAEYEA 1275
>gb|AAP53331.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2035
Score = 117 bits (292), Expect(3) = 4e-40
Identities = 56/119 (47%), Positives = 79/119 (66%)
Frame = -2
Query: 689 SDRCLPFLDTLRGGKAFKWNEVCEEAFLQLKEYLSSPPLLSKPEVGEELCLYLAVTPTTL 510
++R LPFL TLRG F W C+ AF +LK++L SPP L P +G EL LYLA +P +
Sbjct: 1331 AERGLPFLKTLRGAGKFNWTPECQAAFDELKQHLQSPPALISPPLGSELLLYLAASPVAV 1390
Query: 509 SGVLTRDDEHEL*PIYYISKIFRGAEERYPRFKKMAFALVTASRMLRPYFQAHTVVVVS 333
S L ++ + P+Y++S+ +GA+ RY +K+A+ALV ASR L+ YFQAH V+V S
Sbjct: 1391 SAALVQETKFGQKPVYFVSEALQGAKTRYIEMEKLAYALVMASRKLKHYFQAHKVIVPS 1449
Score = 60.5 bits (145), Expect(3) = 4e-40
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Frame = -1
Query: 327 PLRQVLFKLDLSRRLTKWAVELSEYDIQYRSRTAIKAQALADFIVEFPPASAP---PTQQ 157
PL ++L +++ RL+KWA ELS +D+ + +R+AIK+Q L DF+ E+ P AP P +Q
Sbjct: 1452 PLGEILRGKEVTGRLSKWAAELSLFDLHFVARSAIKSQVLVDFVAEWTPVLAPDPEPAEQ 1511
Query: 156 PWVLYVD 136
WV+ D
Sbjct: 1512 FWVMCSD 1518
Score = 34.7 bits (78), Expect(3) = 4e-40
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -2
Query: 89 IVSSPYGTKAKYA*RFQFSATNNVAEYEA 3
++ SP G +Y R QF TNN AEYEA
Sbjct: 1531 VLFSPNGVPIRYVARLQFDTTNNAAEYEA 1559
>gb|AAL58173.1|AC093181_19 putative polyprotein [Oryza sativa Japonica Group]
Length = 1931
Score = 117 bits (292), Expect(3) = 4e-40
Identities = 56/119 (47%), Positives = 79/119 (66%)
Frame = -2
Query: 689 SDRCLPFLDTLRGGKAFKWNEVCEEAFLQLKEYLSSPPLLSKPEVGEELCLYLAVTPTTL 510
++R LPFL TLRG F W C+ AF +LK++L SPP L P +G EL LYLA +P +
Sbjct: 1227 AERGLPFLKTLRGAGKFNWTPECQAAFDELKQHLQSPPALISPPLGSELLLYLAASPVAV 1286
Query: 509 SGVLTRDDEHEL*PIYYISKIFRGAEERYPRFKKMAFALVTASRMLRPYFQAHTVVVVS 333
S L ++ + P+Y++S+ +GA+ RY +K+A+ALV ASR L+ YFQAH V+V S
Sbjct: 1287 SAALVQETKFGQKPVYFVSEALQGAKTRYIEMEKLAYALVMASRKLKHYFQAHKVIVPS 1345
Score = 60.5 bits (145), Expect(3) = 4e-40
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Frame = -1
Query: 327 PLRQVLFKLDLSRRLTKWAVELSEYDIQYRSRTAIKAQALADFIVEFPPASAP---PTQQ 157
PL ++L +++ RL+KWA ELS +D+ + +R+AIK+Q L DF+ E+ P AP P +Q
Sbjct: 1348 PLGEILRGKEVTGRLSKWAAELSLFDLHFVARSAIKSQVLVDFVAEWTPVLAPDPEPAEQ 1407
Query: 156 PWVLYVD 136
WV+ D
Sbjct: 1408 FWVMCSD 1414
Score = 34.7 bits (78), Expect(3) = 4e-40
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -2
Query: 89 IVSSPYGTKAKYA*RFQFSATNNVAEYEA 3
++ SP G +Y R QF TNN AEYEA
Sbjct: 1427 VLFSPNGVPIRYVARLQFDTTNNAAEYEA 1455
>gb|ABA96941.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 496
Score = 117 bits (293), Expect(3) = 5e-40
Identities = 58/115 (50%), Positives = 74/115 (64%)
Frame = -2
Query: 677 LPFLDTLRGGKAFKWNEVCEEAFLQLKEYLSSPPLLSKPEVGEELCLYLAVTPTTLSGVL 498
LPF TLRG F W C+ AF +LK+YL SPP L P G EL LYLA +P +S L
Sbjct: 164 LPFFKTLRGAGKFSWTPKCQVAFDELKQYLQSPPALISPAPGSELLLYLAASPVAVSAAL 223
Query: 497 TRDDEHEL*PIYYISKIFRGAEERYPRFKKMAFALVTASRMLRPYFQAHTVVVVS 333
++ E P+Y+ISK +GA+ RY +K+A+ALV ASR L+ YFQAH V+V S
Sbjct: 224 VQETESGQKPVYFISKALQGAKTRYIEMEKLAYALVMASRKLKHYFQAHKVIVPS 278
Score = 63.2 bits (152), Expect(3) = 5e-40
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Frame = -1
Query: 327 PLRQVLFKLDLSRRLTKWAVELSEYDIQYRSRTAIKAQALADFIVEFPPASAPP---TQQ 157
PL +VL +++ RL KWA ELS +D+ + +RTAIK+Q LA+F+ E+ P P +Q
Sbjct: 281 PLGEVLRGKEITGRLRKWAAELSPFDLHFVARTAIKSQVLANFVAEWTPTFVPEPELIEQ 340
Query: 156 PWVLYVD 136
PW+++ D
Sbjct: 341 PWIMHFD 347
Score = 31.6 bits (70), Expect(3) = 5e-40
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -2
Query: 89 IVSSPYGTKAKYA*RFQFSATNNVAEYEA 3
+++S G YA R QF +TNN AEYEA
Sbjct: 360 VLTSLGGVPIWYAARLQFDSTNNTAEYEA 388
>gb|AAD22505.1| putative retroelement gag/pol polyprotein [Arabidopsis thaliana]
Length = 1212
Score = 130 bits (328), Expect(2) = 7e-40
Identities = 64/120 (53%), Positives = 85/120 (70%), Gaps = 1/120 (0%)
Frame = -2
Query: 689 SDRCLPFLDTLRG-GKAFKWNEVCEEAFLQLKEYLSSPPLLSKPEVGEELCLYLAVTPTT 513
+D+CLPF LR K F W+E CEEAF QLK YLS P +L+KPE GE L LY++V+
Sbjct: 569 TDKCLPFCTLLRKVNKGFVWDERCEEAFRQLKSYLSEPLVLAKPEFGERLFLYISVSENA 628
Query: 512 LSGVLTRDDEHEL*PIYYISKIFRGAEERYPRFKKMAFALVTASRMLRPYFQAHTVVVVS 333
+SGVL R + + PI+Y+SK F E RYP +K+A A+VTA+R LRPYFQ+H +VV++
Sbjct: 629 ISGVLVRVERSDERPIFYVSKSFSDVETRYPMMEKLALAVVTAARKLRPYFQSHPIVVLT 688
Score = 60.1 bits (144), Expect(2) = 7e-40
Identities = 25/51 (49%), Positives = 40/51 (78%)
Frame = -1
Query: 327 PLRQVLFKLDLSRRLTKWAVELSEYDIQYRSRTAIKAQALADFIVEFPPAS 175
PLR +L + S RL KWA+ELSE+++++ +RT++K+Q LADF++E P A+
Sbjct: 691 PLRTILHSPNQSGRLAKWAIELSEFNLEFHARTSLKSQVLADFLIELPLAT 741
>emb|CAE05579.3| OSJNBa0032N05.7 [Oryza sativa Japonica Group]
Length = 1154
Score = 111 bits (277), Expect(3) = 1e-39
Identities = 55/119 (46%), Positives = 74/119 (62%)
Frame = -2
Query: 689 SDRCLPFLDTLRGGKAFKWNEVCEEAFLQLKEYLSSPPLLSKPEVGEELCLYLAVTPTTL 510
++R LPF TLRG F W C+ AF ++K+Y SPP L P +G EL LYLA +P +
Sbjct: 772 AERGLPFFKTLRGAGKFSWTPECQAAFDEVKQYPQSPPTLVSPALGSELLLYLAASPVAV 831
Query: 509 SGVLTRDDEHEL*PIYYISKIFRGAEERYPRFKKMAFALVTASRMLRPYFQAHTVVVVS 333
S L ++ E P+Y+IS+ +GA+ RY +K +ALV ASR L+ YFQAH V V S
Sbjct: 832 SAALVQETESGQKPVYFISEALQGAKLRYIEMEKFTYALVMASRKLKHYFQAHKVTVPS 890
Score = 65.1 bits (157), Expect(3) = 1e-39
Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 3/67 (4%)
Frame = -1
Query: 327 PLRQVLFKLDLSRRLTKWAVELSEYDIQYRSRTAIKAQALADFIVEFPPASA---PPTQQ 157
PL +VL +++ L+KW ELS +D+ + +RTAIK+Q LADF+ ++ PA A P +Q
Sbjct: 893 PLGEVLRGKEITGWLSKWVAELSPFDLHFVARTAIKSQVLADFVAKWTPAFASETEPVEQ 952
Query: 156 PWVLYVD 136
PWV+Y D
Sbjct: 953 PWVMYSD 959
Score = 34.7 bits (78), Expect(3) = 1e-39
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -2
Query: 89 IVSSPYGTKAKYA*RFQFSATNNVAEYEA 3
+++SP G +YA R QF TNN AEY+A
Sbjct: 972 VLTSPGGMLIRYAARLQFDTTNNTAEYKA 1000
>gb|AAQ56331.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1392
Score = 117 bits (294), Expect(3) = 2e-39
Identities = 57/119 (47%), Positives = 76/119 (63%)
Frame = -2
Query: 689 SDRCLPFLDTLRGGKAFKWNEVCEEAFLQLKEYLSSPPLLSKPEVGEELCLYLAVTPTTL 510
++R LPF TLRG F W C+ AF +LK+YL SPP L P G EL LYL +P +
Sbjct: 737 AERGLPFFKTLRGAGKFNWTPECKAAFDELKQYLQSPPALISPSPGSELLLYLVASPVAV 796
Query: 509 SGVLTRDDEHEL*PIYYISKIFRGAEERYPRFKKMAFALVTASRMLRPYFQAHTVVVVS 333
S L ++ E P+Y++S+ +GA+ RY KK+A+ALV ASR L+ YFQAH V+V S
Sbjct: 797 SAALVQETESGQKPVYFVSEALQGAKTRYIEMKKLAYALVMASRKLKHYFQAHKVIVPS 855
Score = 58.2 bits (139), Expect(3) = 2e-39
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Frame = -1
Query: 327 PLRQVLFKLDLSRRLTKWAVELSEYDIQYRSRTAIKAQALADFIVEFPPASAP---PTQQ 157
PL ++L +++ RL+KWA ELS +D+ + +R+AIK+Q LADF+ E+ AP P Q
Sbjct: 858 PLGEILRGKEVTGRLSKWAAELSPFDLHFVARSAIKSQVLADFVAEWTLVLAPDPEPNDQ 917
Query: 156 PWVLYVD 136
WV+ D
Sbjct: 918 FWVMCSD 924
Score = 34.3 bits (77), Expect(3) = 2e-39
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = -2
Query: 89 IVSSPYGTKAKYA*RFQFSATNNVAEYEA 3
++ SP G YA R QF TNN AEYEA
Sbjct: 937 VLFSPNGVPIWYAARLQFDTTNNAAEYEA 965