BLASTX nr result
ID: Stemona21_contig00029866
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Stemona21_contig00029866
(977 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EMJ09180.1| hypothetical protein PRUPE_ppa015715mg, partial [... 75 6e-33
emb|CAN69233.1| hypothetical protein VITISV_003380 [Vitis vinifera] 79 3e-32
gb|AAM94350.1| gag-pol polyprotein [Zea mays] 70 7e-31
ref|XP_004980495.1| PREDICTED: uncharacterized protein LOC101772... 72 3e-30
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja... 66 7e-30
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni... 66 7e-30
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group] 70 9e-30
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ... 75 9e-30
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ... 75 9e-30
gb|EMJ00160.1| hypothetical protein PRUPE_ppa020671mg, partial [... 62 1e-29
gb|AAX96717.1| retrotransposon protein, putative, Ty3-gypsy sub-... 63 2e-29
gb|AAX95495.1| Retrotransposon gag protein, putative [Oryza sati... 63 2e-29
emb|CAE02904.3| OSJNBb0045P24.9 [Oryza sativa Japonica Group] 64 7e-29
gb|ABA96965.2| retrotransposon protein, putative, Ty3-gypsy subc... 64 9e-29
gb|ABD33247.2| RNA-directed DNA polymerase (Reverse transcriptas... 67 1e-28
emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group] 60 2e-28
emb|CAN71204.1| hypothetical protein VITISV_006371 [Vitis vinifera] 71 2e-28
gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum] 68 4e-28
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa... 67 4e-28
emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group] 63 5e-28
>gb|EMJ09180.1| hypothetical protein PRUPE_ppa015715mg, partial [Prunus persica]
Length = 1445
Score = 75.1 bits (183), Expect(3) = 6e-33
Identities = 46/128 (35%), Positives = 73/128 (57%), Gaps = 8/128 (6%)
Frame = +3
Query: 228 TEVCRKVKFLLEEFKVVMPDELPNGLPPLRDIQLQIDFIPHSNL-----FLIMPTTKCV* 392
T + ++ LL EF V+PD+LP+ LPP R+IQ ID +P S + + + P +
Sbjct: 500 TPLADPIQQLLTEFSDVIPDDLPDDLPPAREIQHAIDLVPGSQIPNLPHYRMNPPERVEL 559
Query: 393 STIILYYLKKSYIRESMS-LRISNFVDCKE--RWHICVGSCAISRITIKYMFLISRIDDM 563
+ I L K +IR S+S + + K+ W +CV S A+++IT+KY F I R++DM
Sbjct: 560 NRQIQGLLAKGFIRHSLSPCAVPVLLTPKKDGSWRMCVDSRAVNKITVKYRFPIPRLEDM 619
Query: 564 FNMLVGAQ 587
+ L G+Q
Sbjct: 620 LDDLAGSQ 627
Score = 57.8 bits (138), Expect(3) = 6e-33
Identities = 22/38 (57%), Positives = 32/38 (84%)
Frame = +1
Query: 730 VMKQLFNPFIGKFVIVYFDDILIYSRDKNQHVKHMRTV 843
VM + P+IGKF++VYFDDILIYSR + +H++H+RT+
Sbjct: 669 VMTHVLRPYIGKFLVVYFDDILIYSRSREEHLQHLRTI 706
Score = 56.2 bits (134), Expect(3) = 6e-33
Identities = 22/30 (73%), Positives = 26/30 (86%)
Frame = +2
Query: 635 DEWKTTFETQEGLYEWFVVPFGLSNDPSTF 724
DEWKT F+T +GLYEW V+PFG+SN PSTF
Sbjct: 637 DEWKTAFKTPDGLYEWLVMPFGMSNAPSTF 666
>emb|CAN69233.1| hypothetical protein VITISV_003380 [Vitis vinifera]
Length = 1292
Score = 78.6 bits (192), Expect(3) = 3e-32
Identities = 49/129 (37%), Positives = 73/129 (56%), Gaps = 8/129 (6%)
Frame = +3
Query: 216 KTNNTEVCRKVKFLLEEFKVVMPDELPNGLPPLRDIQLQIDFIPHSNL-----FLIMPTT 380
K + E V+ +L++F P ELPN LPP+RD+Q ID IP ++L + + PT
Sbjct: 494 KEQDKEYPANVRKILDDFSDFWPTELPNQLPPMRDVQHAIDLIPGASLPNLPAYRMNPTE 553
Query: 381 KCV*STIILYYLKKSYIRESMS-LRISNFVDCKE--RWHICVGSCAISRITIKYMFLISR 551
+ L K +IRES+S + + K+ W +CV S A+++ITIKY F I R
Sbjct: 554 HAELKRQVDELLTKGFIRESLSPYGVPALLTPKKDGSWRMCVDSRAMNKITIKYRFPIPR 613
Query: 552 IDDMFNMLV 578
+DDM +M+V
Sbjct: 614 LDDMLDMMV 622
Score = 54.3 bits (129), Expect(3) = 3e-32
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +1
Query: 730 VMKQLFNPFIGKFVIVYFDDILIYSRDKNQHVKHMRTVL 846
+M Q+ PFIG+FV+VYFDDILIYSR H +H++ V+
Sbjct: 677 IMTQVLKPFIGRFVVVYFDDILIYSRSCEDHEEHLKQVM 715
Score = 53.9 bits (128), Expect(3) = 3e-32
Identities = 22/34 (64%), Positives = 29/34 (85%)
Frame = +2
Query: 623 IKVEDEWKTTFETQEGLYEWFVVPFGLSNDPSTF 724
I+ DEWKT+F+T++GLYEW V+ FGL+N PSTF
Sbjct: 641 IRPGDEWKTSFKTKDGLYEWLVMLFGLTNAPSTF 674
>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 69.7 bits (169), Expect(3) = 7e-31
Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 8/120 (6%)
Frame = +3
Query: 255 LLEEFKVVMPDELPNGLPPLRDIQLQIDFIPHSNL-----FLIMPTTKCV*STIILYYLK 419
+L+E+ V P E+P GLPP+R I+ QID IP ++L + P + L
Sbjct: 687 ILQEYSDVFPSEIPEGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLD 746
Query: 420 KSYIRESMSLRISNFVDCKER---WHICVGSCAISRITIKYMFLISRIDDMFNMLVGAQV 590
K Y+RES+S + ++ W +CV AI+ ITI+Y I R+DDM + L GA V
Sbjct: 747 KGYVRESLSPCAVPVILVPKKDGTWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGAIV 806
Score = 56.6 bits (135), Expect(3) = 7e-31
Identities = 23/34 (67%), Positives = 29/34 (85%)
Frame = +2
Query: 623 IKVEDEWKTTFETQEGLYEWFVVPFGLSNDPSTF 724
+K+ DEWKT F+T+ GLYEW V+PFGL+N PSTF
Sbjct: 821 MKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTF 854
Score = 55.8 bits (133), Expect(3) = 7e-31
Identities = 23/41 (56%), Positives = 32/41 (78%)
Frame = +1
Query: 730 VMKQLFNPFIGKFVIVYFDDILIYSRDKNQHVKHMRTVLHS 852
+M ++ FIGKFV+VYFDDILIYS+ ++HV HMR V ++
Sbjct: 857 LMNEVLRAFIGKFVVVYFDDILIYSKSMDEHVDHMRAVFNA 897
>ref|XP_004980495.1| PREDICTED: uncharacterized protein LOC101772114 [Setaria italica]
Length = 1246
Score = 71.6 bits (174), Expect(3) = 3e-30
Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 8/120 (6%)
Frame = +3
Query: 255 LLEEFKVVMPDELPNGLPPLRDIQLQIDFIPHSNL-----FLIMPTTKCV*STIILYYLK 419
LL++FK V PDE+P GLPPLR I+ QID +P ++L + P + L
Sbjct: 630 LLQDFKDVFPDEVPAGLPPLRGIEHQIDLVPGASLPNRPAYRTNPEETKEIQQQVKELLD 689
Query: 420 KSYIRESMS---LRISNFVDCKERWHICVGSCAISRITIKYMFLISRIDDMFNMLVGAQV 590
K Y+RES+S + + W +CV AI+ IT++Y I R+DDM + L G+ +
Sbjct: 690 KGYVRESLSPCAVPVLLVPKKDGSWRMCVDCRAINAITVRYRHPIPRLDDMLDELSGSTI 749
Score = 56.2 bits (134), Expect(3) = 3e-30
Identities = 23/34 (67%), Positives = 29/34 (85%)
Frame = +2
Query: 623 IKVEDEWKTTFETQEGLYEWFVVPFGLSNDPSTF 724
+K+ DEWKTTF+T+ GLYEW V+P GL+N PSTF
Sbjct: 764 MKIGDEWKTTFKTKFGLYEWLVMPSGLTNAPSTF 797
Score = 52.0 bits (123), Expect(3) = 3e-30
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +1
Query: 730 VMKQLFNPFIGKFVIVYFDDILIYSRDKNQHVKHMRTVL 846
+M + FIGKFV+VYFDDILIYS+ ++H+ H+R VL
Sbjct: 800 LMNHVLRAFIGKFVVVYFDDILIYSKSFDEHLDHIRQVL 838
>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431012|gb|AAP52850.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 2447
Score = 66.2 bits (160), Expect(3) = 7e-30
Identities = 43/120 (35%), Positives = 64/120 (53%), Gaps = 8/120 (6%)
Frame = +3
Query: 255 LLEEFKVVMPDELPNGLPPLRDIQLQIDFIPHSNL-----FLIMPTTKCV*STIILYYLK 419
+L+E+ V P E+P GLPP+R I+ QID IP ++L + P + L
Sbjct: 684 ILQEYSDVFPKEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLD 743
Query: 420 KSYIRESMSLRISNFVDCKER---WHICVGSCAISRITIKYMFLISRIDDMFNMLVGAQV 590
K Y+RES+S + ++ W +CV AI+ ITI+Y I R+DDM + L G+ V
Sbjct: 744 KGYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIV 803
Score = 56.6 bits (135), Expect(3) = 7e-30
Identities = 23/34 (67%), Positives = 29/34 (85%)
Frame = +2
Query: 623 IKVEDEWKTTFETQEGLYEWFVVPFGLSNDPSTF 724
+K+ DEWKT F+T+ GLYEW V+PFGL+N PSTF
Sbjct: 818 MKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTF 851
Score = 55.8 bits (133), Expect(3) = 7e-30
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = +1
Query: 730 VMKQLFNPFIGKFVIVYFDDILIYSRDKNQHVKHMRTVLHS 852
+M ++ PFIGKFV+VYFDDILIYS+ +H H+R V ++
Sbjct: 854 LMNEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNA 894
>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 66.2 bits (160), Expect(3) = 7e-30
Identities = 43/120 (35%), Positives = 64/120 (53%), Gaps = 8/120 (6%)
Frame = +3
Query: 255 LLEEFKVVMPDELPNGLPPLRDIQLQIDFIPHSNL-----FLIMPTTKCV*STIILYYLK 419
+L+E+ V P E+P GLPP+R I+ QID IP ++L + P + L
Sbjct: 663 ILQEYSDVFPKEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLD 722
Query: 420 KSYIRESMSLRISNFVDCKER---WHICVGSCAISRITIKYMFLISRIDDMFNMLVGAQV 590
K Y+RES+S + ++ W +CV AI+ ITI+Y I R+DDM + L G+ V
Sbjct: 723 KGYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIV 782
Score = 56.6 bits (135), Expect(3) = 7e-30
Identities = 23/34 (67%), Positives = 29/34 (85%)
Frame = +2
Query: 623 IKVEDEWKTTFETQEGLYEWFVVPFGLSNDPSTF 724
+K+ DEWKT F+T+ GLYEW V+PFGL+N PSTF
Sbjct: 797 MKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTF 830
Score = 55.8 bits (133), Expect(3) = 7e-30
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = +1
Query: 730 VMKQLFNPFIGKFVIVYFDDILIYSRDKNQHVKHMRTVLHS 852
+M ++ PFIGKFV+VYFDDILIYS+ +H H+R V ++
Sbjct: 833 LMNEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNA 873
>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1713
Score = 69.7 bits (169), Expect(3) = 9e-30
Identities = 49/151 (32%), Positives = 74/151 (49%), Gaps = 9/151 (5%)
Frame = +3
Query: 195 VCPKPRKKTNN-TEVCRKVKFLLEEFKVVMPDELPNGLPPLRDIQLQIDFIPHSNL---- 359
VC N+ T V V +L+E++ V P+E P GLPPLR I+ QID IP + L
Sbjct: 666 VCKDTLLSANDLTSVPSVVARVLQEYEDVFPEETPVGLPPLRGIEHQIDLIPGATLPNRP 725
Query: 360 -FLIMPTTKCV*STIILYYLKKSYIRESMSLRISNFVDCKER---WHICVGSCAISRITI 527
+ P + L K Y+RES+S + ++ W +CV AI+ IT+
Sbjct: 726 AYRTNPEETKEIQRQVQALLDKGYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITV 785
Query: 528 KYMFLISRIDDMFNMLVGAQVLLIFEVAISF 620
+Y I R+DDM + L G+ + ++ F
Sbjct: 786 RYRHPIPRLDDMLDELSGSMIFSKIDLRSGF 816
Score = 57.4 bits (137), Expect(3) = 9e-30
Identities = 23/34 (67%), Positives = 29/34 (85%)
Frame = +2
Query: 623 IKVEDEWKTTFETQEGLYEWFVVPFGLSNDPSTF 724
+K+ DEWKT F+T+ GLYEW V+PFGL+N PSTF
Sbjct: 821 MKIGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTF 854
Score = 51.2 bits (121), Expect(3) = 9e-30
Identities = 22/39 (56%), Positives = 29/39 (74%)
Frame = +1
Query: 730 VMKQLFNPFIGKFVIVYFDDILIYSRDKNQHVKHMRTVL 846
+M + FIGKFV+VYFDDILIYS+ +HV H++ VL
Sbjct: 857 LMNHVLRAFIGKFVVVYFDDILIYSKTLEEHVAHIQQVL 895
>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 74.7 bits (182), Expect(3) = 9e-30
Identities = 46/123 (37%), Positives = 66/123 (53%), Gaps = 8/123 (6%)
Frame = +3
Query: 246 VKFLLEEFKVVMPDELPNGLPPLRDIQLQIDFIPHSNL-----FLIMPTTKCV*STIILY 410
V LL+ F+ V PD+ P GLPPLR I+ QIDF+P S L + P +
Sbjct: 664 VSSLLQNFEDVFPDDTPKGLPPLRGIEHQIDFVPGSQLPNRPAYRSNPEETKELQRQVEE 723
Query: 411 YLKKSYIRESM---SLRISNFVDCKERWHICVGSCAISRITIKYMFLISRIDDMFNMLVG 581
L K ++RESM S+ + W +CV AI++IT+KY I R+DDM + L G
Sbjct: 724 LLVKGFVRESMSPCSVPVLLVPKKDGTWRMCVDCRAINKITVKYRHPIPRLDDMLDQLCG 783
Query: 582 AQV 590
+++
Sbjct: 784 SKI 786
Score = 55.1 bits (131), Expect(3) = 9e-30
Identities = 22/30 (73%), Positives = 26/30 (86%)
Frame = +2
Query: 635 DEWKTTFETQEGLYEWFVVPFGLSNDPSTF 724
DEWKT F+T+ GLYEW V+PFGL+N PSTF
Sbjct: 805 DEWKTAFKTKYGLYEWLVMPFGLTNAPSTF 834
Score = 48.5 bits (114), Expect(3) = 9e-30
Identities = 18/38 (47%), Positives = 31/38 (81%)
Frame = +1
Query: 730 VMKQLFNPFIGKFVIVYFDDILIYSRDKNQHVKHMRTV 843
+M +F F GKF++VYFDDILI+S++ ++H++H++ V
Sbjct: 837 LMNHVFKDFHGKFIVVYFDDILIFSQNLDEHLEHLKKV 874
>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 74.7 bits (182), Expect(3) = 9e-30
Identities = 46/123 (37%), Positives = 66/123 (53%), Gaps = 8/123 (6%)
Frame = +3
Query: 246 VKFLLEEFKVVMPDELPNGLPPLRDIQLQIDFIPHSNL-----FLIMPTTKCV*STIILY 410
V LL+ F+ V PD+ P GLPPLR I+ QIDF+P S L + P +
Sbjct: 664 VSSLLQNFEDVFPDDTPKGLPPLRGIEHQIDFVPGSQLPNRPAYRSNPEETKELQRQVEE 723
Query: 411 YLKKSYIRESM---SLRISNFVDCKERWHICVGSCAISRITIKYMFLISRIDDMFNMLVG 581
L K ++RESM S+ + W +CV AI++IT+KY I R+DDM + L G
Sbjct: 724 LLVKGFVRESMSPCSVPVLLVPKKDGTWRMCVDCRAINKITVKYRHPIPRLDDMLDQLCG 783
Query: 582 AQV 590
+++
Sbjct: 784 SKI 786
Score = 55.1 bits (131), Expect(3) = 9e-30
Identities = 22/30 (73%), Positives = 26/30 (86%)
Frame = +2
Query: 635 DEWKTTFETQEGLYEWFVVPFGLSNDPSTF 724
DEWKT F+T+ GLYEW V+PFGL+N PSTF
Sbjct: 805 DEWKTAFKTKYGLYEWLVMPFGLTNAPSTF 834
Score = 48.5 bits (114), Expect(3) = 9e-30
Identities = 18/38 (47%), Positives = 31/38 (81%)
Frame = +1
Query: 730 VMKQLFNPFIGKFVIVYFDDILIYSRDKNQHVKHMRTV 843
+M +F F GKF++VYFDDILI+S++ ++H++H++ V
Sbjct: 837 LMNHVFKDFHGKFIVVYFDDILIFSQNLDEHLEHLKKV 874
>gb|EMJ00160.1| hypothetical protein PRUPE_ppa020671mg, partial [Prunus persica]
Length = 1460
Score = 61.6 bits (148), Expect(3) = 1e-29
Identities = 24/40 (60%), Positives = 32/40 (80%)
Frame = +1
Query: 730 VMKQLFNPFIGKFVIVYFDDILIYSRDKNQHVKHMRTVLH 849
VM +F P+IGKF++VYFDDILIYS K H++H+RT+ H
Sbjct: 764 VMTHVFRPYIGKFLVVYFDDILIYSHSKEDHLQHLRTIFH 803
Score = 58.5 bits (140), Expect(3) = 1e-29
Identities = 26/51 (50%), Positives = 35/51 (68%)
Frame = +2
Query: 572 ARWCSSVAHL*SSYII*IKVEDEWKTTFETQEGLYEWFVVPFGLSNDPSTF 724
++W S + + I I+ DEWKT F+T +GLYEW V+PFG+SN PSTF
Sbjct: 711 SKWFSKIDLHSGYHQIRIREGDEWKTAFKTPDGLYEWLVMPFGMSNAPSTF 761
Score = 57.8 bits (138), Expect(3) = 1e-29
Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Frame = +3
Query: 258 LEEFKVVMPDELPNGLPPLRDIQLQIDFIPHSNL-----FLIMPTTKCV*STIILYYLKK 422
L EF VMPD+LPN LPP+RDIQ ID +P S L + + + +T I L K
Sbjct: 606 LNEFSDVMPDDLPNELPPMRDIQHAIDLVPGSQLPNLPHYRMNSSEHAELNTQIQGLLDK 665
Query: 423 SYIRESMSLRISNFVDCKER---WHICVGSCAISRIT 524
+IR S+S + ++ W +CV S AI++IT
Sbjct: 666 GFIRHSLSPCAVPVLFTPKKDGSWRMCVDSRAINKIT 702
>gb|AAX96717.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group] gi|108864301|gb|ABA93040.2|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1748
Score = 63.2 bits (152), Expect(3) = 2e-29
Identities = 42/117 (35%), Positives = 61/117 (52%), Gaps = 8/117 (6%)
Frame = +3
Query: 264 EFKVVMPDELPNGLPPLRDIQLQIDFIPHSNL-----FLIMPTTKCV*STIILYYLKKSY 428
E+ V P E+P GLPP+R I+ QID IP ++L + P + L K Y
Sbjct: 1029 EYSDVFPKEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGY 1088
Query: 429 IRESMSLRISNFVDCKER---WHICVGSCAISRITIKYMFLISRIDDMFNMLVGAQV 590
+RES+S + ++ W +CV AI+ ITI+Y I R+DDM + L G+ V
Sbjct: 1089 VRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIV 1145
Score = 58.5 bits (140), Expect(3) = 2e-29
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = +2
Query: 623 IKVEDEWKTTFETQEGLYEWFVVPFGLSNDPSTF 724
+K+ DEWKTTF+T+ GLYEW V+PFGL+N PSTF
Sbjct: 1160 MKLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTF 1193
Score = 55.8 bits (133), Expect(3) = 2e-29
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = +1
Query: 730 VMKQLFNPFIGKFVIVYFDDILIYSRDKNQHVKHMRTVLHS 852
+M ++ PFIGKFV+VYFDDILIYS+ +H H+R V ++
Sbjct: 1196 LMNEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNA 1236
>gb|AAX95495.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
Length = 1739
Score = 63.2 bits (152), Expect(3) = 2e-29
Identities = 42/117 (35%), Positives = 61/117 (52%), Gaps = 8/117 (6%)
Frame = +3
Query: 264 EFKVVMPDELPNGLPPLRDIQLQIDFIPHSNL-----FLIMPTTKCV*STIILYYLKKSY 428
E+ V P E+P GLPP+R I+ QID IP ++L + P + L K Y
Sbjct: 1020 EYSDVFPKEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGY 1079
Query: 429 IRESMSLRISNFVDCKER---WHICVGSCAISRITIKYMFLISRIDDMFNMLVGAQV 590
+RES+S + ++ W +CV AI+ ITI+Y I R+DDM + L G+ V
Sbjct: 1080 VRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIV 1136
Score = 58.5 bits (140), Expect(3) = 2e-29
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = +2
Query: 623 IKVEDEWKTTFETQEGLYEWFVVPFGLSNDPSTF 724
+K+ DEWKTTF+T+ GLYEW V+PFGL+N PSTF
Sbjct: 1151 MKLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTF 1184
Score = 55.8 bits (133), Expect(3) = 2e-29
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = +1
Query: 730 VMKQLFNPFIGKFVIVYFDDILIYSRDKNQHVKHMRTVLHS 852
+M ++ PFIGKFV+VYFDDILIYS+ +H H+R V ++
Sbjct: 1187 LMNEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNA 1227
>emb|CAE02904.3| OSJNBb0045P24.9 [Oryza sativa Japonica Group]
Length = 1361
Score = 63.9 bits (154), Expect(3) = 7e-29
Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
Frame = +3
Query: 255 LLEEFKVVMPDELPNGLPPLRDIQLQIDFIPHSNL-----FLIMPTTKCV*STIILYYLK 419
LL++++ V P E+P GLPP+R I+ QID IP ++L + P + L
Sbjct: 738 LLQKYEDVFPAEIPPGLPPMRGIEHQIDLIPGASLPNRAAYRTNPDETKEIQQQVEDLLD 797
Query: 420 KSYIRESMSLRISNFVDCKER---WHICVGSCAISRITIKYMFLISRIDDMFNMLVGA 584
+ Y+R+S+S + ++ W +CV AI+ ITI+Y I R+DDM + L G+
Sbjct: 798 RGYVRQSLSPYAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELCGS 855
Score = 56.6 bits (135), Expect(3) = 7e-29
Identities = 23/34 (67%), Positives = 29/34 (85%)
Frame = +2
Query: 623 IKVEDEWKTTFETQEGLYEWFVVPFGLSNDPSTF 724
+K+ DEWKT F+T+ GLYEW V+PFGL+N PSTF
Sbjct: 872 MKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTF 905
Score = 54.7 bits (130), Expect(3) = 7e-29
Identities = 21/41 (51%), Positives = 33/41 (80%)
Frame = +1
Query: 730 VMKQLFNPFIGKFVIVYFDDILIYSRDKNQHVKHMRTVLHS 852
+M ++ PFIG+FV+VYFDDILIYS+ ++H+ H+R V ++
Sbjct: 908 LMNEVVRPFIGRFVVVYFDDILIYSKSLDEHMDHLRVVFNA 948
>gb|ABA96965.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1202
Score = 63.5 bits (153), Expect(3) = 9e-29
Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
Frame = +3
Query: 255 LLEEFKVVMPDELPNGLPPLRDIQLQIDFIPHSNL-----FLIMPTTKCV*STIILYYLK 419
LL+E++ V P E+P GLPP+R I+ QID IP ++L + P + L
Sbjct: 533 LLQEYEDVFPAEIPLGLPPMRGIEHQIDLIPGASLPNRAAYRTNPEETKEIQRQVQDLLD 592
Query: 420 KSYIRESMSLRISNFVDCKER---WHICVGSCAISRITIKYMFLISRIDDMFNMLVGA 584
+ Y+R+S+S + + ++ W +CV AI+ ITI+Y I R DDM + L G+
Sbjct: 593 RWYVRQSLSPCVVPVILVPKKDGSWRMCVDYRAINNITIRYRHPIPRSDDMLDELCGS 650
Score = 56.6 bits (135), Expect(3) = 9e-29
Identities = 23/34 (67%), Positives = 29/34 (85%)
Frame = +2
Query: 623 IKVEDEWKTTFETQEGLYEWFVVPFGLSNDPSTF 724
+K+ DEWKT F+T+ GLYEW V+PFGL+N PSTF
Sbjct: 667 MKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTF 700
Score = 54.7 bits (130), Expect(3) = 9e-29
Identities = 21/41 (51%), Positives = 33/41 (80%)
Frame = +1
Query: 730 VMKQLFNPFIGKFVIVYFDDILIYSRDKNQHVKHMRTVLHS 852
+M ++ PFIG+FV+VYFDDILIYS+ ++H+ H+R V ++
Sbjct: 703 LMNEVLRPFIGRFVVVYFDDILIYSKSFDEHMDHLRAVFNA 743
>gb|ABD33247.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 386
Score = 66.6 bits (161), Expect(3) = 1e-28
Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 8/143 (5%)
Frame = +3
Query: 186 WFCVCPKPRKKTNNTEVCRKVKFLLEEFKVVMPDELPNGLPPLRDIQLQIDFIPHSNL-- 359
+F C ++ + + +LL++F V P ELP+GLPPLR I+ ID IP ++L
Sbjct: 141 YFLYCNDLCLSASHDVIPSSLNYLLKDFADVFPKELPHGLPPLRGIEHHIDLIPSASLPN 200
Query: 360 ---FLIMPTTKCV*STIILYYLKKSYIRESMSLRISNFVDCKER---WHICVGSCAISRI 521
+ P T + L+ + ++S+S + ++ W +C AI+ I
Sbjct: 201 RPPYRSNPEQTKEIETQVHKLLENGWFQDSLSPCAMPVILVPKKDGTWRMCTNCRAINNI 260
Query: 522 TIKYMFLISRIDDMFNMLVGAQV 590
TIKY I R+DDM + L GA V
Sbjct: 261 TIKYRHPIPRLDDMLDELHGACV 283
Score = 55.5 bits (132), Expect(3) = 1e-28
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +2
Query: 623 IKVEDEWKTTFETQEGLYEWFVVPFGLSNDPSTF 724
I+ DEWKT F+T+ GLYEW V+PFGL+N PSTF
Sbjct: 298 IREGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTF 331
Score = 52.8 bits (125), Expect(3) = 1e-28
Identities = 20/38 (52%), Positives = 30/38 (78%)
Frame = +1
Query: 730 VMKQLFNPFIGKFVIVYFDDILIYSRDKNQHVKHMRTV 843
+M + FIGKFV+VYFDDIL+YS + N H++H+R++
Sbjct: 334 LMNHILRHFIGKFVVVYFDDILVYSLNLNDHIEHLRSI 371
>emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]
Length = 2241
Score = 59.7 bits (143), Expect(3) = 2e-28
Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Frame = +3
Query: 255 LLEEFKVVMPDELPNGLPPLRDIQLQIDFIPHSNL-----FLIMPTTKCV*STIILYYLK 419
+L+E+ V P E+P GLP +R I+ QID IP ++L + P + L
Sbjct: 778 ILQEYSDVFPKEVPPGLPLVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLD 837
Query: 420 KSYIRESMSLRISNFVDCKER---WHICVGSCAISRITIKYMFLISRIDDMFNMLVGAQV 590
K Y+RES+S + ++ W +CV AI+ TI+Y I R+DDM + L G+ V
Sbjct: 838 KGYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNNTIRYRHPIPRLDDMLDELSGSIV 897
Score = 58.5 bits (140), Expect(3) = 2e-28
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = +2
Query: 623 IKVEDEWKTTFETQEGLYEWFVVPFGLSNDPSTF 724
+K+ DEWKTTF+T+ GLYEW V+PFGL+N PSTF
Sbjct: 912 MKLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTF 945
Score = 55.8 bits (133), Expect(3) = 2e-28
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = +1
Query: 730 VMKQLFNPFIGKFVIVYFDDILIYSRDKNQHVKHMRTVLHS 852
+M ++ PFIGKFV+VYFDDILIYS+ +H H+R V ++
Sbjct: 948 LMNEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNA 988
>emb|CAN71204.1| hypothetical protein VITISV_006371 [Vitis vinifera]
Length = 737
Score = 70.9 bits (172), Expect(3) = 2e-28
Identities = 44/120 (36%), Positives = 70/120 (58%), Gaps = 8/120 (6%)
Frame = +3
Query: 255 LLEEFKVVMPDELPNGLPPLRDIQLQIDFIPHSNL-----FLIMPTTKCV*STIILYYLK 419
+L++F + P +LPN LPP+R++Q ID IP ++L + + PT + L
Sbjct: 381 ILDDFSDLWPAKLPNELPPMRNVQHAIDLIPXASLPNLPXYRMNPTXHAELKRQVDELLT 440
Query: 420 KSYIRESMS-LRISNFVDCKE--RWHICVGSCAISRITIKYMFLISRIDDMFNMLVGAQV 590
K +IRES+S + + K +CV S AI++ITIKY F I R++DM +M+VG+ +
Sbjct: 441 KGFIRESLSPCGVPALLTPKXDGSXXMCVDSRAINKITIKYRFPIPRLBDMLDMMVGSVI 500
Score = 54.7 bits (130), Expect(3) = 2e-28
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = +1
Query: 730 VMKQLFNPFIGKFVIVYFDDILIYSRDKNQHVKHMRTVLHS 852
+M Q+ PFIG+FV+VYFDDILIYSR H +H++ V+ +
Sbjct: 551 IMTQVLKPFIGRFVVVYFDDILIYSRSCEDHEEHLKQVMRT 591
Score = 48.1 bits (113), Expect(3) = 2e-28
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = +2
Query: 623 IKVEDEWKTTFETQEGLYEWFVVPFGLSNDPSTF 724
I+ DE T+F+T++GLYEW V+ FGL+N PSTF
Sbjct: 515 IRXGDEXXTSFKTKDGLYEWLVMXFGLTNAPSTF 548
>gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]
Length = 1004
Score = 68.2 bits (165), Expect(3) = 4e-28
Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Frame = +3
Query: 219 TNNTEVCRKVKFLLEEFKVVMPDELPNGLPPLRDIQLQIDFIPHSNL-----FLIMPTTK 383
+N ++ ++ LL+EFK + P+E+P+GLPP+R I+ ID P ++L + P
Sbjct: 562 SNEKKLPNCIESLLQEFKELFPEEVPSGLPPIRGIEHHIDLNPGASLPNRPAYRSNPQQT 621
Query: 384 CV*STIILYYLKKSYIRESMSLRISNFVDCKER---WHICVGSCAISRITIKYMFLISRI 554
+ + K ++RES+S + ++ W +C AIS ITIKY I R+
Sbjct: 622 QEIQRQVAELISKGWVRESLSPCAVPIILVPKKDGSWRMCTDCRAISNITIKYRHPIPRL 681
Query: 555 DDMFNMLVGA 584
DD+ + L GA
Sbjct: 682 DDLLDELFGA 691
Score = 55.5 bits (132), Expect(3) = 4e-28
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +2
Query: 623 IKVEDEWKTTFETQEGLYEWFVVPFGLSNDPSTF 724
I+ DEWKT F+T+ GLYEW V+PFGL+N PSTF
Sbjct: 708 IREGDEWKTAFKTKFGLYEWMVMPFGLTNAPSTF 741
Score = 49.3 bits (116), Expect(3) = 4e-28
Identities = 20/39 (51%), Positives = 29/39 (74%)
Frame = +1
Query: 730 VMKQLFNPFIGKFVIVYFDDILIYSRDKNQHVKHMRTVL 846
+M + F+GKFV+VYFDDILIYS++ + H H++ VL
Sbjct: 744 LMNHVLREFLGKFVVVYFDDILIYSKNLDDHCIHLKAVL 782
>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|15217296|gb|AAK92640.1|AC079634_1 Putative
retroelement [Oryza sativa Japonica Group]
gi|31431373|gb|AAP53161.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1708
Score = 67.0 bits (162), Expect(3) = 4e-28
Identities = 43/120 (35%), Positives = 63/120 (52%), Gaps = 8/120 (6%)
Frame = +3
Query: 255 LLEEFKVVMPDELPNGLPPLRDIQLQIDFIPHSNL-----FLIMPTTKCV*STIILYYLK 419
LL+E+ + P E+P GLPP+R I+ QID IP ++L + P + L
Sbjct: 712 LLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLD 771
Query: 420 KSYIRESM---SLRISNFVDCKERWHICVGSCAISRITIKYMFLISRIDDMFNMLVGAQV 590
K Y+RES+ S+ + W +CV AI+ ITI+Y I R+DDM + L G+ V
Sbjct: 772 KGYVRESLSPCSIPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLV 831
Score = 56.6 bits (135), Expect(3) = 4e-28
Identities = 23/34 (67%), Positives = 29/34 (85%)
Frame = +2
Query: 623 IKVEDEWKTTFETQEGLYEWFVVPFGLSNDPSTF 724
+K+ DEWKT F+T+ GLYEW V+PFGL+N PSTF
Sbjct: 846 MKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTF 879
Score = 48.9 bits (115), Expect(3) = 4e-28
Identities = 21/38 (55%), Positives = 27/38 (71%)
Frame = +1
Query: 730 VMKQLFNPFIGKFVIVYFDDILIYSRDKNQHVKHMRTV 843
+M ++ FIG+FV+VYFDDILIYSR H H+R V
Sbjct: 882 LMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAV 919
>emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group]
Length = 1667
Score = 63.2 bits (152), Expect(3) = 5e-28
Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
Frame = +3
Query: 264 EFKVVMPDELPNGLPPLRDIQLQIDFIPHSNL-----FLIMPTTKCV*STIILYYLKKSY 428
E+ V P E+P GLPP+R I+ QID IP ++L + P + L K Y
Sbjct: 610 EYSDVFPKEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGY 669
Query: 429 IRESMS--LRISNFVDCKE-RWHICVGSCAISRITIKYMFLISRIDDMFNMLVGAQV 590
+RES+S + V K+ W +CV AI+ ITI+Y I R+DDM + L G+ V
Sbjct: 670 VRESLSPCAVLVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIV 726
Score = 55.8 bits (133), Expect(3) = 5e-28
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = +1
Query: 730 VMKQLFNPFIGKFVIVYFDDILIYSRDKNQHVKHMRTVLHS 852
+M ++ PFIGKFV+VYFDDILIYS+ +H H+R V ++
Sbjct: 777 LMNEVLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNA 817
Score = 53.5 bits (127), Expect(3) = 5e-28
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +2
Query: 635 DEWKTTFETQEGLYEWFVVPFGLSNDPSTF 724
DEWKT F+T+ GLYEW V+PFGL+N P+TF
Sbjct: 745 DEWKTAFKTKFGLYEWLVMPFGLTNAPTTF 774