BLASTX nr result
ID: Stemona21_contig00028979
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Stemona21_contig00028979
(265 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFJ80051.1| RNA polymerase beta subunit, partial (chloroplast... 62 3e-10
gb|AFJ73381.1| RNA polymerase beta subunit, partial (chloroplast... 62 3e-10
gb|AFJ73380.1| RNA polymerase beta subunit, partial (chloroplast... 62 3e-10
gb|AFJ73379.1| RNA polymerase beta subunit, partial (chloroplast... 62 3e-10
ref|YP_007476037.1| RNA polymerase beta' subunit [Dasypogon brom... 64 4e-10
gb|AGE93188.1| RNA polymerase beta' subunit [Calectasia narragara] 64 4e-10
gb|AFJ80049.1| RNA polymerase beta subunit, partial (chloroplast... 62 5e-10
gb|AAZ03983.1| RNA polymerase beta'' chain [Typha latifolia] 62 7e-10
ref|YP_003433965.1| RNA polymerase beta' subunit [Typha latifoli... 62 7e-10
ref|YP_001294342.1| RNA polymerase beta'' subunit [Dioscorea ele... 62 7e-10
gb|AEZ01417.1| RNA polymerase beta' subunit (chloroplast) [Japon... 62 7e-10
gb|AHH24323.1| RNA polymerase beta' subunit (chloroplast) [Japon... 62 7e-10
gb|ABD93788.1| RNA polymerase beta chain [Blandfordia grandiflora] 62 7e-10
gb|ABV65700.1| RNA polymerase beta'' subunit (chloroplast) [Berb... 62 8e-10
gb|AFJ80055.1| RNA polymerase beta subunit, partial (chloroplast... 62 9e-10
gb|AFJ73384.1| RNA polymerase beta subunit, partial (chloroplast... 62 9e-10
gb|AFJ80053.1| RNA polymerase beta subunit, partial (chloroplast... 62 9e-10
gb|AFJ80052.1| RNA polymerase beta subunit, partial (chloroplast... 62 9e-10
gb|AFJ80056.1| RNA polymerase beta subunit, partial (chloroplast... 62 9e-10
gb|AFJ73385.1| RNA polymerase beta subunit, partial (chloroplast... 62 9e-10
>gb|AFJ80051.1| RNA polymerase beta subunit, partial (chloroplast) [Paphiopedilum
besseae]
Length = 880
Score = 62.4 bits (150), Expect(2) = 3e-10
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 2 LVQPKVIVVTYEIADGINLATLFPQDLLQEKDNVQLRL 115
LV+P VVTYEI+DGINLATLFPQDLLQEKDNVQLR+
Sbjct: 427 LVRP---VVTYEISDGINLATLFPQDLLQEKDNVQLRI 461
Score = 27.7 bits (60), Expect(2) = 3e-10
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1
Query: 115 RVVNYILYGNSNS 153
R+VNYILYGNS S
Sbjct: 460 RIVNYILYGNSKS 472
>gb|AFJ73381.1| RNA polymerase beta subunit, partial (chloroplast) [Phragmipedium
longifolium]
Length = 880
Score = 62.4 bits (150), Expect(2) = 3e-10
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 2 LVQPKVIVVTYEIADGINLATLFPQDLLQEKDNVQLRL 115
LV+P VVTYEI+DGINLATLFPQDLLQEKDNVQLR+
Sbjct: 427 LVRP---VVTYEISDGINLATLFPQDLLQEKDNVQLRI 461
Score = 27.7 bits (60), Expect(2) = 3e-10
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1
Query: 115 RVVNYILYGNSNS 153
R+VNYILYGNS S
Sbjct: 460 RIVNYILYGNSKS 472
>gb|AFJ73380.1| RNA polymerase beta subunit, partial (chloroplast) [Phragmipedium
lindleyanum]
Length = 880
Score = 62.4 bits (150), Expect(2) = 3e-10
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 2 LVQPKVIVVTYEIADGINLATLFPQDLLQEKDNVQLRL 115
LV+P VVTYEI+DGINLATLFPQDLLQEKDNVQLR+
Sbjct: 427 LVRP---VVTYEISDGINLATLFPQDLLQEKDNVQLRI 461
Score = 27.7 bits (60), Expect(2) = 3e-10
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1
Query: 115 RVVNYILYGNSNS 153
R+VNYILYGNS S
Sbjct: 460 RIVNYILYGNSKS 472
>gb|AFJ73379.1| RNA polymerase beta subunit, partial (chloroplast) [Phragmipedium
caricinum]
Length = 880
Score = 62.4 bits (150), Expect(2) = 3e-10
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 2 LVQPKVIVVTYEIADGINLATLFPQDLLQEKDNVQLRL 115
LV+P VVTYEI+DGINLATLFPQDLLQEKDNVQLR+
Sbjct: 427 LVRP---VVTYEISDGINLATLFPQDLLQEKDNVQLRI 461
Score = 27.7 bits (60), Expect(2) = 3e-10
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1
Query: 115 RVVNYILYGNSNS 153
R+VNYILYGNS S
Sbjct: 460 RIVNYILYGNSKS 472
>ref|YP_007476037.1| RNA polymerase beta' subunit [Dasypogon bromeliifolius]
gi|374413207|gb|AEZ49477.1| RNA polymerase beta''
subunit [Dasypogon bromeliifolius]
gi|449326521|gb|AGE93102.1| RNA polymerase beta' subunit
[Dasypogon bromeliifolius]
Length = 1382
Score = 63.5 bits (153), Expect(2) = 4e-10
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 2 LVQPKVIVVTYEIADGINLATLFPQDLLQEKDNVQLRL 115
LV+P VVTYEIADGINLATLFPQDLLQEKDNVQLR+
Sbjct: 771 LVRP---VVTYEIADGINLATLFPQDLLQEKDNVQLRI 805
Score = 26.2 bits (56), Expect(2) = 4e-10
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 115 RVVNYILYGNSNS 153
R+VNYILYGN S
Sbjct: 804 RIVNYILYGNEKS 816
>gb|AGE93188.1| RNA polymerase beta' subunit [Calectasia narragara]
Length = 1381
Score = 63.5 bits (153), Expect(2) = 4e-10
Identities = 33/38 (86%), Positives = 35/38 (92%)
Frame = +2
Query: 2 LVQPKVIVVTYEIADGINLATLFPQDLLQEKDNVQLRL 115
LV+P VVTYEIADGINLATLFPQDLLQEKDNVQLR+
Sbjct: 771 LVRP---VVTYEIADGINLATLFPQDLLQEKDNVQLRI 805
Score = 26.2 bits (56), Expect(2) = 4e-10
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 115 RVVNYILYGNSNS 153
R+VNYILYGN S
Sbjct: 804 RIVNYILYGNEKS 816
>gb|AFJ80049.1| RNA polymerase beta subunit, partial (chloroplast) [Paphiopedilum
vietnamense]
Length = 882
Score = 61.6 bits (148), Expect(2) = 5e-10
Identities = 32/38 (84%), Positives = 34/38 (89%)
Frame = +2
Query: 2 LVQPKVIVVTYEIADGINLATLFPQDLLQEKDNVQLRL 115
LVQP VV YEI+DGINLATLFPQDLLQEKDNVQLR+
Sbjct: 427 LVQP---VVPYEISDGINLATLFPQDLLQEKDNVQLRI 461
Score = 27.7 bits (60), Expect(2) = 5e-10
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1
Query: 115 RVVNYILYGNSNS 153
R+VNYILYGNS S
Sbjct: 460 RIVNYILYGNSKS 472
>gb|AAZ03983.1| RNA polymerase beta'' chain [Typha latifolia]
Length = 1387
Score = 62.4 bits (150), Expect(2) = 7e-10
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +2
Query: 23 VVTYEIADGINLATLFPQDLLQEKDNVQLRL 115
VVTYEIADGINLATLFPQDLLQEKDNVQLR+
Sbjct: 779 VVTYEIADGINLATLFPQDLLQEKDNVQLRV 809
Score = 26.6 bits (57), Expect(2) = 7e-10
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +1
Query: 115 RVVNYILYGNSNS 153
RVVNYILYGN S
Sbjct: 808 RVVNYILYGNGKS 820
>ref|YP_003433965.1| RNA polymerase beta' subunit [Typha latifolia]
gi|281371762|gb|ADA63689.1| RNA polymerase beta' subunit
[Typha latifolia]
Length = 1383
Score = 62.4 bits (150), Expect(2) = 7e-10
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +2
Query: 23 VVTYEIADGINLATLFPQDLLQEKDNVQLRL 115
VVTYEIADGINLATLFPQDLLQEKDNVQLR+
Sbjct: 775 VVTYEIADGINLATLFPQDLLQEKDNVQLRV 805
Score = 26.6 bits (57), Expect(2) = 7e-10
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +1
Query: 115 RVVNYILYGNSNS 153
RVVNYILYGN S
Sbjct: 804 RVVNYILYGNGKS 816
>ref|YP_001294342.1| RNA polymerase beta'' subunit [Dioscorea elephantipes]
gi|212288317|sp|A6MMJ7.1|RPOC2_DIOEL RecName:
Full=DNA-directed RNA polymerase subunit beta'';
AltName: Full=PEP; AltName: Full=Plastid-encoded RNA
polymerase subunit beta''; Short=RNA polymerase subunit
beta'' gi|148668036|gb|ABR01420.1| RNA polymerase beta'
subunit [Dioscorea elephantipes]
Length = 1382
Score = 62.4 bits (150), Expect(2) = 7e-10
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +2
Query: 23 VVTYEIADGINLATLFPQDLLQEKDNVQLRL 115
VVTYEIADGINLATLFPQDLLQEKDNVQLR+
Sbjct: 781 VVTYEIADGINLATLFPQDLLQEKDNVQLRV 811
Score = 26.6 bits (57), Expect(2) = 7e-10
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +1
Query: 115 RVVNYILYGNSNS 153
RVVNYILYGN S
Sbjct: 810 RVVNYILYGNGKS 822
>gb|AEZ01417.1| RNA polymerase beta' subunit (chloroplast) [Japonolirion osense]
Length = 1378
Score = 62.4 bits (150), Expect(2) = 7e-10
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +2
Query: 23 VVTYEIADGINLATLFPQDLLQEKDNVQLRL 115
VVTYEIADGINLATLFPQDLLQEKDNVQLR+
Sbjct: 780 VVTYEIADGINLATLFPQDLLQEKDNVQLRV 810
Score = 26.6 bits (57), Expect(2) = 7e-10
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +1
Query: 115 RVVNYILYGNSNS 153
RVVNYILYGN S
Sbjct: 809 RVVNYILYGNGKS 821
>gb|AHH24323.1| RNA polymerase beta' subunit (chloroplast) [Japonolirion osense]
Length = 1374
Score = 62.4 bits (150), Expect(2) = 7e-10
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +2
Query: 23 VVTYEIADGINLATLFPQDLLQEKDNVQLRL 115
VVTYEIADGINLATLFPQDLLQEKDNVQLR+
Sbjct: 776 VVTYEIADGINLATLFPQDLLQEKDNVQLRV 806
Score = 26.6 bits (57), Expect(2) = 7e-10
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +1
Query: 115 RVVNYILYGNSNS 153
RVVNYILYGN S
Sbjct: 805 RVVNYILYGNGKS 817
>gb|ABD93788.1| RNA polymerase beta chain [Blandfordia grandiflora]
Length = 856
Score = 62.4 bits (150), Expect(2) = 7e-10
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +2
Query: 23 VVTYEIADGINLATLFPQDLLQEKDNVQLRL 115
VVTYEIADGINLATLFPQDLLQEKDNVQLR+
Sbjct: 326 VVTYEIADGINLATLFPQDLLQEKDNVQLRV 356
Score = 26.6 bits (57), Expect(2) = 7e-10
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +1
Query: 115 RVVNYILYGNSNS 153
RVVNYILYGN S
Sbjct: 355 RVVNYILYGNGKS 367
>gb|ABV65700.1| RNA polymerase beta'' subunit (chloroplast) [Berberidopsis
corallina]
Length = 1389
Score = 62.0 bits (149), Expect(2) = 8e-10
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 2 LVQPKVIVVTYEIADGINLATLFPQDLLQEKDNVQLRL 115
LV+P VVTYEIADGINLATLFPQDLLQE+DNVQLR+
Sbjct: 778 LVRP---VVTYEIADGINLATLFPQDLLQERDNVQLRV 812
Score = 26.6 bits (57), Expect(2) = 8e-10
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 115 RVVNYILYGNS 147
RVVNYILYGNS
Sbjct: 811 RVVNYILYGNS 821
>gb|AFJ80055.1| RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
passerinum]
Length = 887
Score = 62.4 bits (150), Expect(2) = 9e-10
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 2 LVQPKVIVVTYEIADGINLATLFPQDLLQEKDNVQLRL 115
LV+P VVTYEI+DGINLATLFPQDLLQEKDNVQLR+
Sbjct: 432 LVRP---VVTYEISDGINLATLFPQDLLQEKDNVQLRI 466
Score = 26.2 bits (56), Expect(2) = 9e-10
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 115 RVVNYILYGNSNS 153
R+VNYILYGN S
Sbjct: 465 RIVNYILYGNGKS 477
>gb|AFJ73384.1| RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
flavum]
Length = 887
Score = 62.4 bits (150), Expect(2) = 9e-10
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 2 LVQPKVIVVTYEIADGINLATLFPQDLLQEKDNVQLRL 115
LV+P VVTYEI+DGINLATLFPQDLLQEKDNVQLR+
Sbjct: 432 LVRP---VVTYEISDGINLATLFPQDLLQEKDNVQLRI 466
Score = 26.2 bits (56), Expect(2) = 9e-10
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 115 RVVNYILYGNSNS 153
R+VNYILYGN S
Sbjct: 465 RIVNYILYGNGKS 477
>gb|AFJ80053.1| RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
farreri]
Length = 886
Score = 62.4 bits (150), Expect(2) = 9e-10
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 2 LVQPKVIVVTYEIADGINLATLFPQDLLQEKDNVQLRL 115
LV+P VVTYEI+DGINLATLFPQDLLQEKDNVQLR+
Sbjct: 431 LVRP---VVTYEISDGINLATLFPQDLLQEKDNVQLRI 465
Score = 26.2 bits (56), Expect(2) = 9e-10
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 115 RVVNYILYGNSNS 153
R+VNYILYGN S
Sbjct: 464 RIVNYILYGNGKS 476
>gb|AFJ80052.1| RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
tibeticum]
Length = 886
Score = 62.4 bits (150), Expect(2) = 9e-10
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 2 LVQPKVIVVTYEIADGINLATLFPQDLLQEKDNVQLRL 115
LV+P VVTYEI+DGINLATLFPQDLLQEKDNVQLR+
Sbjct: 431 LVRP---VVTYEISDGINLATLFPQDLLQEKDNVQLRI 465
Score = 26.2 bits (56), Expect(2) = 9e-10
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 115 RVVNYILYGNSNS 153
R+VNYILYGN S
Sbjct: 464 RIVNYILYGNGKS 476
>gb|AFJ80056.1| RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
californicum]
Length = 884
Score = 62.4 bits (150), Expect(2) = 9e-10
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 2 LVQPKVIVVTYEIADGINLATLFPQDLLQEKDNVQLRL 115
LV+P VVTYEI+DGINLATLFPQDLLQEKDNVQLR+
Sbjct: 429 LVRP---VVTYEISDGINLATLFPQDLLQEKDNVQLRI 463
Score = 26.2 bits (56), Expect(2) = 9e-10
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 115 RVVNYILYGNSNS 153
R+VNYILYGN S
Sbjct: 462 RIVNYILYGNGKS 474
>gb|AFJ73385.1| RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
japonicum]
Length = 884
Score = 62.4 bits (150), Expect(2) = 9e-10
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 2 LVQPKVIVVTYEIADGINLATLFPQDLLQEKDNVQLRL 115
LV+P VVTYEI+DGINLATLFPQDLLQEKDNVQLR+
Sbjct: 429 LVRP---VVTYEISDGINLATLFPQDLLQEKDNVQLRI 463
Score = 26.2 bits (56), Expect(2) = 9e-10
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 115 RVVNYILYGNSNS 153
R+VNYILYGN S
Sbjct: 462 RIVNYILYGNGKS 474