BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Stemona21_contig00026553
         (1588 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004299997.1| PREDICTED: putative ribonuclease H protein A...   162   5e-37
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...   142   5e-31
gb|EEC81662.1| hypothetical protein OsI_25211 [Oryza sativa Indi...   140   2e-30
gb|EEE54600.1| hypothetical protein OsJ_01823 [Oryza sativa Japo...   138   8e-30
gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo...   138   8e-30
emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga...   136   2e-29
ref|NP_001175214.1| Os07g0501200 [Oryza sativa Japonica Group] g...   134   8e-29
ref|XP_004308707.1| PREDICTED: putative ribonuclease H protein A...   132   5e-28
ref|XP_006469101.1| PREDICTED: putative ribonuclease H protein A...   131   7e-28
gb|EOY25817.1| Non-LTR retroelement reverse transcriptase [Theob...   130   1e-27
ref|XP_006485449.1| PREDICTED: uncharacterized protein LOC102621...   130   2e-27
gb|EOX98014.1| Ribonuclease H protein [Theobroma cacao]               129   3e-27
gb|EOY02864.1| Ribonuclease H protein [Theobroma cacao]               129   4e-27
gb|AAK39575.1|AC025296_10 putative reverse transcriptase [Oryza ...   128   6e-27
ref|XP_006492749.1| PREDICTED: uncharacterized protein LOC102612...   127   1e-26
gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa ...   127   1e-26
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta...   127   1e-26
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]             125   5e-26
emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulga...   125   5e-26
gb|EMJ20613.1| hypothetical protein PRUPE_ppa021915mg, partial [...   125   7e-26

>ref|XP_004299997.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
            vesca subsp. vesca]
          Length = 448

 Score =  162 bits (409), Expect = 5e-37
 Identities = 115/434 (26%), Positives = 194/434 (44%), Gaps = 11/434 (2%)
 Frame = -2

Query: 1482 LCWQVGNGLTIDPWVDNWLIGGPLNRRAAPIRIVDSCQISKVKDLTMNGTWNLQLIQSIF 1303
            L W++G+G  +  W D W++  PL + A P  +++    S V D   +  WN++++  + 
Sbjct: 5    LSWRIGDGKMVKFWSDTWVLSVPLLQFALPHAVINLS--STVCDFWCDTGWNIEMLSDVV 62

Query: 1302 PPSIAMEILSLSPPIEDS-NDSILWPFTSNGMPTVKSIYKAIIAPLAPAGNYYMDWKAIW 1126
            PP +  +I+S     EDS ND ++W  TSNG+ +VKS Y +      P  +Y   WK +W
Sbjct: 63   PPEVVNQIISFPTGFEDSGNDQLIWKATSNGVFSVKSAYISSFDMAEPQHHY---WKVVW 119

Query: 1125 ATPTVPKVKVFLWKCMHNRLPTRSYLHHVHITNNAACPRCDAPLEDIH-HILLGCANNVH 949
                +PK+K F W  +H ++ T         T +A CP C++  E +H   + G     +
Sbjct: 120  KLNCLPKLKTFFWTVLHKKILTNVQRVRRRFTTSAVCPICNSADESLHSETVTGLKRFGN 179

Query: 948  LWEDIFSYLHIQQVPSLDSLATVLLSPNNQKSIVQAFRASTIGYAAWLIWKNRNSYIFEG 769
            L+  +  +L       +  ++  L   +  K+ ++    +   +  W +WK RN  +F+ 
Sbjct: 180  LFAPLLIFLTRLSWAGIIWISAQLFCQSKVKNGIK--WCNLFVFVCWFLWKWRNKIVFDS 237

Query: 768  KI---KSTTVIFWQSIRMAKEFLNSNQLYVVASHEDSLLACKWGLSPKCRNMKTSVGITW 598
                     ++ W  +   +E+ ++                    +P   NM     ++W
Sbjct: 238  SFVMPGDPALVIWNYV---EEWTSAQS------------------NPSSSNMFNVTYLSW 276

Query: 597  KAPQTNWLYLNTDAAFHCSSKIAGLGAVLRDSSGRPLLLTAGCGT---VRNVLEAETLAL 427
              P  N L LN D     SS   G G VLRD +G  +    GC     V  VL AE   L
Sbjct: 277  LRPPANCLKLNIDGTRSSSSGKIGAGGVLRDHAGNWIF---GCQINLGVGEVLYAEAWGL 333

Query: 426  FRFLKTVKEAFTQPINIQVDSALLALFL---NTERHPPWYIRGTIAAIKRMLGPRDSVSH 256
               LK V + +   + ++ DSA+L   +   + E HP   +    ++    + P   +SH
Sbjct: 334  LFGLKLVAKFYCSDLEVESDSAVLVQLMQKRSFELHPLGSLLSACSSFMSKM-PNVKLSH 392

Query: 255  IYREANQVADYLSK 214
            I+RE N VAD L+K
Sbjct: 393  IFRECNMVADSLAK 406


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  142 bits (357), Expect = 5e-31
 Identities = 130/487 (26%), Positives = 198/487 (40%), Gaps = 27/487 (5%)
 Frame = -2

Query: 1587 AKYNPLERGWVPSRRSTCSPIWKQLCMAASRLAPFLCWQVGNGLTIDPWVDNWLIGG--- 1417
            AKY PL   + P + S  S  W+ +      L   + W+VG+G  I+ W D W+  G   
Sbjct: 1143 AKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSKINIWADPWIPRGWSR 1202

Query: 1416 -PLNRRAAPIRIVDSCQISKVKDLT--MNGTWNLQLIQSIFPPSIAMEILSLSPPIEDSN 1246
             P+  R A +       ++KV++L     GTW+  L+   F       I S+   +E   
Sbjct: 1203 KPMTPRGANL-------VTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIPVHVE-ME 1254

Query: 1245 DSILWPFTSNGMPTVKSIYK--------AIIAPLAPAGNYYMD----WKAIWATPTVPKV 1102
            D + W F + G  TVKS YK        A         N+       WK +W      K+
Sbjct: 1255 DVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKI 1314

Query: 1101 KVFLWKCMHNRLPTRSYLHHVHITNNAACPRCDAPLEDIHHILLGCANNVHLW-----ED 937
            K FLW+  HN L  R+ LHH  +  +  C  C    ED  H+   C     +W     E+
Sbjct: 1315 KHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVWQALNLEE 1374

Query: 936  IFSYLHIQQVPSLDSLATVLLSPNNQKSIVQAFRASTIGYAAWLIWKNRNSYIFEGKIKS 757
            + S L  QQ    + L ++   P N+       R S I    W  WK RN     G  +S
Sbjct: 1375 LRSMLE-QQTSGKNVLQSIYCRPENE-------RTSAI-VCLWQWWKERNEVREGGIPRS 1425

Query: 756  TTVIFWQSIRMAKEFLNSNQLYVVASHEDSLLACKWGLSPKCRNMKTSVGITWKAPQTNW 577
               +    +  A EF+  N                     K ++ +T     W+ P  N+
Sbjct: 1426 PAELSHLIMSQAGEFVRMN--------------------VKEKSPRTGECAVWRRPPLNF 1465

Query: 576  LYLNTDAAFHCSSKIAGLGAVLRDSSGRPLLLTAG-CGTVRNVLEAETLALFRFLKTVKE 400
            + +NTD A+  + K  G G V++D +G  L   AG    +++   AE +A    +KT  E
Sbjct: 1466 VKINTDGAYSSNMKQGGWGFVIKDQTGAVLQAGAGPAAYLQDAFHAEVVACAAAIKTASE 1525

Query: 399  AFTQPINIQVDSALLALFLNTERHPPWYIRGTIAAIKRML---GPRDSVSHIYREANQVA 229
                 I ++ DS +L   +         + G I  IK ++       SVS+  R  N+VA
Sbjct: 1526 RGMSRIELETDSMMLRYAIQDNSFNLSSLGGVILEIKHIILSCFHSFSVSYSPRSCNKVA 1585

Query: 228  DYLSKWG 208
              L+ +G
Sbjct: 1586 HELAAYG 1592


>gb|EEC81662.1| hypothetical protein OsI_25211 [Oryza sativa Indica Group]
          Length = 561

 Score =  140 bits (353), Expect = 2e-30
 Identities = 129/487 (26%), Positives = 198/487 (40%), Gaps = 27/487 (5%)
 Frame = -2

Query: 1587 AKYNPLERGWVPSRRSTCSPIWKQLCMAASRLAPFLCWQVGNGLTIDPWVDNWLIGG--- 1417
            AKY PL   + P + S  S  W+ +      L   + W++G+G  I+ W D W+  G   
Sbjct: 83   AKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRMGDGSKINIWADPWIPRGWSR 142

Query: 1416 -PLNRRAAPIRIVDSCQISKVKDLT--MNGTWNLQLIQSIFPPSIAMEILSLSPPIEDSN 1246
             P+  R A +       ++KV++L     GTW+  L+   F       I S+   +E   
Sbjct: 143  KPMTPRGANL-------VTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIPVHVE-ME 194

Query: 1245 DSILWPFTSNGMPTVKSIYK--------AIIAPLAPAGNYYMD----WKAIWATPTVPKV 1102
            D + W F + G  TVKS YK        A         N+       WK +W      K+
Sbjct: 195  DVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKI 254

Query: 1101 KVFLWKCMHNRLPTRSYLHHVHITNNAACPRCDAPLEDIHHILLGCANNVHLW-----ED 937
            K FLW+  HN L  R+ LHH  +  +  C  C    ED  H+   C     +W     E+
Sbjct: 255  KHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVWQALNLEE 314

Query: 936  IFSYLHIQQVPSLDSLATVLLSPNNQKSIVQAFRASTIGYAAWLIWKNRNSYIFEGKIKS 757
            + S L  QQ    + L ++   P N+       R S I    W  WK RN     G  +S
Sbjct: 315  LRSMLK-QQTSGKNVLQSIYCRPENE-------RTSAI-VCLWQWWKERNEVREGGIPRS 365

Query: 756  TTVIFWQSIRMAKEFLNSNQLYVVASHEDSLLACKWGLSPKCRNMKTSVGITWKAPQTNW 577
               +    +  A EF+  N                     K ++ +T     W+ P  N+
Sbjct: 366  PAELSHLIMSQAGEFVRMN--------------------VKEKSPRTGECAVWRRPPLNF 405

Query: 576  LYLNTDAAFHCSSKIAGLGAVLRDSSGRPLLLTAG-CGTVRNVLEAETLALFRFLKTVKE 400
            + +NTD A+  + K  G G V++D +G  L   AG    +++   AE +A    +KT  E
Sbjct: 406  VKINTDGAYSSNMKQGGWGFVIKDQTGAVLQAGAGPAAYLQDAFHAEVVACAAAIKTASE 465

Query: 399  AFTQPINIQVDSALLALFLNTERHPPWYIRGTIAAIKRML---GPRDSVSHIYREANQVA 229
                 I ++ DS +L   +         + G I  IK ++       SVS+  R  N+VA
Sbjct: 466  RGMSRIELETDSMMLRYAIQDNSFNLSSLGGVILEIKHIILSCFHSFSVSYSPRSCNKVA 525

Query: 228  DYLSKWG 208
              L+ +G
Sbjct: 526  HELAAYG 532


>gb|EEE54600.1| hypothetical protein OsJ_01823 [Oryza sativa Japonica Group]
          Length = 639

 Score =  138 bits (347), Expect = 8e-30
 Identities = 127/489 (25%), Positives = 198/489 (40%), Gaps = 29/489 (5%)
 Frame = -2

Query: 1587 AKYNPLERGWVPSRRSTCSPIWKQLCMAASRLAPFLCWQVGNGLTIDPWVDNWLIGG--- 1417
            AKY PL   + P + S  S  W+ +      L   + W++G+G  I+ W D W+  G   
Sbjct: 83   AKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRMGDGSKINIWADPWIPRGWSR 142

Query: 1416 -PLNRRAAPIRIVDSCQISKVKDLT--MNGTWNLQLIQSIFPPSIAMEILSLSPPIEDSN 1246
             P+  R A +       ++KV++L     GTW+  L+   F       I S+   +E   
Sbjct: 143  KPMTPRGANL-------VTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIPVHVE-ME 194

Query: 1245 DSILWPFTSNGMPTVKSIYK--------AIIAPLAPAGNYYMD----WKAIWATPTVPKV 1102
            D + W F + G  TVKS YK        A         N+       WK +W      K+
Sbjct: 195  DVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKI 254

Query: 1101 KVFLWKCMHNRLPTRSYLHHVHITNNAACPRCDAPLEDIHHILLGCANNVHLWEDIFSYL 922
            K FLW+  HN L  R+ L H  +  +  C  C    ED  H+   C     +W       
Sbjct: 255  KHFLWRMCHNTLALRANLQHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVW------- 307

Query: 921  HIQQVPSLDSLATVLLSPNNQKSIVQAF-------RASTIGYAAWLIWKNRNSYIFEGKI 763
               Q  +L+ L ++L    + K+++Q+        R S I    W  WK RN     G  
Sbjct: 308  ---QALNLEELRSMLEQQTSGKNVLQSIYCRPEIERTSAI-VCLWQWWKERNEVREGGIP 363

Query: 762  KSTTVIFWQSIRMAKEFLNSNQLYVVASHEDSLLACKWGLSPKCRNMKTSVGITWKAPQT 583
            +S   +    +  A EF+  N                     K ++ +T     W+ P  
Sbjct: 364  RSPAELSHLIMSQAGEFVRMN--------------------VKEKSPRTGECAVWRRPPL 403

Query: 582  NWLYLNTDAAFHCSSKIAGLGAVLRDSSGRPLLLTAG-CGTVRNVLEAETLALFRFLKTV 406
            N++ +NTD A+  + K  G G V+RD +G  L   AG    +++   AE +A    +KT 
Sbjct: 404  NFVKINTDGAYSSNMKQGGWGFVIRDQTGAVLQAGAGPAAYLQDAFHAEVVACAAAIKTA 463

Query: 405  KEAFTQPINIQVDSALLALFLNTERHPPWYIRGTIAAIKRML---GPRDSVSHIYREANQ 235
             E     I ++ DS +L   +         + G I  IK ++       SVS+  R  N+
Sbjct: 464  SERGMSRIELETDSMMLRYAIQDNSFNLSSLGGVILEIKHIILSCFHSFSVSYSPRSCNK 523

Query: 234  VADYLSKWG 208
            VA  L+ +G
Sbjct: 524  VAHELAAYG 532


>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
          Length = 1594

 Score =  138 bits (347), Expect = 8e-30
 Identities = 127/489 (25%), Positives = 198/489 (40%), Gaps = 29/489 (5%)
 Frame = -2

Query: 1587 AKYNPLERGWVPSRRSTCSPIWKQLCMAASRLAPFLCWQVGNGLTIDPWVDNWLIGG--- 1417
            AKY PL   + P + S  S  W+ +      L   + W++G+G  I+ W D W+  G   
Sbjct: 1116 AKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRMGDGSKINIWADPWIPRGWSR 1175

Query: 1416 -PLNRRAAPIRIVDSCQISKVKDLT--MNGTWNLQLIQSIFPPSIAMEILSLSPPIEDSN 1246
             P+  R A +       ++KV++L     GTW+  L+   F       I S+   +E   
Sbjct: 1176 KPMTPRGANL-------VTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIPVHVE-ME 1227

Query: 1245 DSILWPFTSNGMPTVKSIYK--------AIIAPLAPAGNYYMD----WKAIWATPTVPKV 1102
            D + W F + G  TVKS YK        A         N+       WK +W      K+
Sbjct: 1228 DVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKI 1287

Query: 1101 KVFLWKCMHNRLPTRSYLHHVHITNNAACPRCDAPLEDIHHILLGCANNVHLWEDIFSYL 922
            K FLW+  HN L  R+ L H  +  +  C  C    ED  H+   C     +W       
Sbjct: 1288 KHFLWRMCHNTLALRANLQHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVW------- 1340

Query: 921  HIQQVPSLDSLATVLLSPNNQKSIVQAF-------RASTIGYAAWLIWKNRNSYIFEGKI 763
               Q  +L+ L ++L    + K+++Q+        R S I    W  WK RN     G  
Sbjct: 1341 ---QALNLEELRSMLEQQTSGKNVLQSIYCRPEIERTSAI-VCLWQWWKERNEVREGGIP 1396

Query: 762  KSTTVIFWQSIRMAKEFLNSNQLYVVASHEDSLLACKWGLSPKCRNMKTSVGITWKAPQT 583
            +S   +    +  A EF+  N                     K ++ +T     W+ P  
Sbjct: 1397 RSPAELSHLIMSQAGEFVRMN--------------------VKEKSPRTGECAVWRRPPL 1436

Query: 582  NWLYLNTDAAFHCSSKIAGLGAVLRDSSGRPLLLTAG-CGTVRNVLEAETLALFRFLKTV 406
            N++ +NTD A+  + K  G G V+RD +G  L   AG    +++   AE +A    +KT 
Sbjct: 1437 NFVKINTDGAYSSNMKQGGWGFVIRDQTGAVLQAGAGPAAYLQDAFHAEVVACAAAIKTA 1496

Query: 405  KEAFTQPINIQVDSALLALFLNTERHPPWYIRGTIAAIKRML---GPRDSVSHIYREANQ 235
             E     I ++ DS +L   +         + G I  IK ++       SVS+  R  N+
Sbjct: 1497 SERGMSRIELETDSMMLRYAIQDNSFNLSSLGGVILEIKHIILSCFHSFSVSYSPRSCNK 1556

Query: 234  VADYLSKWG 208
            VA  L+ +G
Sbjct: 1557 VAHELAAYG 1565


>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1389

 Score =  136 bits (343), Expect = 2e-29
 Identities = 126/460 (27%), Positives = 207/460 (45%), Gaps = 15/460 (3%)
 Frame = -2

Query: 1542 STCSPIWKQLCMAASRLAPFLCWQVGNGLTIDPWVDNWLIGGPLNRRAAPIRIVDSCQIS 1363
            S  S  WK L    +  +  L W +G+G  I  W DNW+   PLN +  P   V S  I 
Sbjct: 918  SNASWQWKNLLRHRNFFSKGLRWLIGDGQDISFWTDNWIFQYPLNSKYVPT--VGSENIK 975

Query: 1362 KVKDLTMNGTWNLQLIQSIFPPSIAMEILSLSPPIEDSNDSILWPFTSNGMPTVKSIYKA 1183
              +     G W++  + ++ PP+I   I S+  P     D +LW  T  G  +VKS   +
Sbjct: 976  VAECFNGLGGWDIPKLLTLVPPNIVKAISSVFIPSSSQQDRLLWGLTPTGQYSVKS-GAS 1034

Query: 1182 IIAPLAPAGNYYMDWKAIWATPTVPKVKVFLWKCMHNRLPTRSYLHHVHITNNAACPRCD 1003
            +I  +       +++  IW     PK+K FLWK  ++ L T S L   HI     C  CD
Sbjct: 1035 LIREVNGGTIEKVEFNWIWGIHAPPKIKNFLWKACNDGLATTSRLERSHIFVPQNCCFCD 1094

Query: 1002 APLEDIHHILLGCANNVHLWEDIFSYLHIQ-QVPSLDS-LATVLLSPNNQKSIVQAFRAS 829
             P E I H+   C   +    DI+S+L  + Q P+  S  +T+ LS  + +S+++A   +
Sbjct: 1095 CPSETICHLCFQCPFTL----DIYSHLEDKFQWPAYPSWFSTLQLS--SFRSVLEACHIN 1148

Query: 828  -TIGYAA------WLIWKNRNSYIFEGKIKSTTVIFWQSIRMAKEFLNSNQLYVVASHED 670
             T+ Y        W +W  RN  IF  +  S    F Q+  +   F+     +  A+ E 
Sbjct: 1149 LTLEYLTKLSIVWWHVWYFRNKLIFNNESTS----FSQASFIIHSFMGK---WEKANLE- 1200

Query: 669  SLLACKWGLSPKCR-NMKTSVGITWKAPQTNWLYLNTDAAFHCSSKIAGLGAVLRDSSGR 493
             + +    L   C+  +++   + W  P  + L +N D +    +  A  G V+R+S+G 
Sbjct: 1201 -IPSFNTPLPKDCKLPVRSGKNLIWSPPNEDVLKVNFDGS-KLDNGQAAYGFVIRNSNGE 1258

Query: 492  PLLLTA-GCGTVRNVLEAETLALFRFLKTV--KEAFTQPINIQVDSALLALFLNTERHPP 322
             L+  A   G   ++L AE + L   +K     + +++ I  + D+  +   ++     P
Sbjct: 1259 VLMARAKALGVYPSILMAEAMGLLEGIKGAISLQNWSRKIIFEGDNIAVINAMSPSATGP 1318

Query: 321  WYIRGTIAAIKRMLGPRDSV--SHIYREANQVADYLSKWG 208
            W I   I     +LG    V   H YREAN++AD+++  G
Sbjct: 1319 WTIANIILDAGALLGHFQEVKFQHCYREANRLADFMAHKG 1358


>ref|NP_001175214.1| Os07g0501200 [Oryza sativa Japonica Group]
            gi|255677791|dbj|BAH93942.1| Os07g0501200 [Oryza sativa
            Japonica Group]
          Length = 620

 Score =  134 bits (338), Expect = 8e-29
 Identities = 134/501 (26%), Positives = 199/501 (39%), Gaps = 23/501 (4%)
 Frame = -2

Query: 1587 AKYNPLERGWVPSRRSTCSPIWKQLCMAASRLAPFLCWQVGNGLTIDPWVDNWLIGGPLN 1408
            AKY P       S     SP WK +      L   + W+VGNG +I  W D WL   P +
Sbjct: 128  AKYFPNGSIIDTSFGGNSSPGWKGIEYGLELLKKGIIWRVGNGHSIRIWRDPWL---PRD 184

Query: 1407 RRAAPIRIVDSCQISKVKDLTM-NGTWNLQLIQSIFPPSIAMEILSLSPPIEDSNDSILW 1231
                PI    +C+I  V DL   NG W+L+ IQ  F       IL + P      D + W
Sbjct: 185  FSRRPITRKGNCRIKWVPDLLNDNGEWDLERIQQHFNQIDTDIILKIRPSRSQEADFVAW 244

Query: 1230 PFTSNGMPTVKSIYKAIIA-------PLAPAGNYYMDWKAIWATPTVPKVKVFLWKCMHN 1072
                +G+ +V+S Y   ++         +   +    WK +W      KVK+F WK   N
Sbjct: 245  HPDKHGIFSVRSAYHLAVSLANVNSSSSSSGHDLSKAWKLVWNCNIPQKVKIFAWKAATN 304

Query: 1071 RLPTRSYLHHVHITNNAACPRCDAPLEDIHHILLGCANNVHLWEDIFSY--LHIQQVPSL 898
             L T        +   A C  C    ED+ H L  C +  +LW  + S   +  +   S 
Sbjct: 305  SLATLQNKKTRRLEPMAICSICGREEEDVAHALCRCPHATNLWLSLRSSKDISFEAGASW 364

Query: 897  DSLATVLLSPNNQKSIVQAFRASTIGYAAWLIWKNRNSYIFEGKIKSTT-------VIFW 739
                 +L    +Q  ++     +      W IW NRN  I+ GK            V + 
Sbjct: 365  SGSGWIL----DQLGLIAKEEGAMFLMLLWRIWYNRNE-IYHGKSAPPVSVSHRFIVSYV 419

Query: 738  QSIRMAKEFLNSNQLYVVASHEDSLLACKWGLS----PKCRNMKTSVGITWKAPQTNWLY 571
             S+R  K+F  ++  +       S L C  G S    PK  N        W+ P   W+ 
Sbjct: 420  SSLREIKQFPRAD--FAKGKFVVSNLGCMKGTSQVPDPKVLN-------HWEKPNPGWMK 470

Query: 570  LNTDAAFHCSSKIAGLGAVLRDSSGRPLLLTAGCGTVRNVLEAETLALFRFLKTVKEAFT 391
            LN D +F       G+GAVLR+S+G  L+           LEAE LA    +    +   
Sbjct: 471  LNVDGSFDARYGSGGIGAVLRNSAG-SLIFCGNMSRCGGALEAELLACREGIIMALQWTL 529

Query: 390  QPINIQVDSALLALFLNTERHPPWYIRGTIAAIKRML-GPRD-SVSHIYREANQVADYLS 217
             P  ++ DS  L   +         +   +  ++  L G R+  +  I+RE N V+D+L+
Sbjct: 530  LPFIVETDSLELLKLVGAGSSDRSELAFLVKEVRDPLSGNREIIIRKIHRENNCVSDFLA 589

Query: 216  KWGSICREDFLIFYPNINDCN 154
              G    E    F+P+ N C+
Sbjct: 590  NKGG--SESLTAFWPD-NSCD 607


>ref|XP_004308707.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
            vesca subsp. vesca]
          Length = 498

 Score =  132 bits (331), Expect = 5e-28
 Identities = 98/374 (26%), Positives = 158/374 (42%), Gaps = 10/374 (2%)
 Frame = -2

Query: 1587 AKYNPLERGWVPSRRSTCSPIWKQLCMAASRLAPFLCWQVGNGLTIDPWVDNWLIGGPLN 1408
            A+Y P    W  +   + S  W+ +  +   LA  + W+VG+G  I  W D+W+   P  
Sbjct: 23   ARYYPYCSFWEANLSDSPSFSWRSIVQSRPVLAAGVHWKVGDGTQIQIWTDDWIPEVPRY 82

Query: 1407 RRAAPIRIVDSCQISKVKDLTMNG--TWNLQLIQSIFPPSIAMEILSLSPPIEDSNDSIL 1234
            R   P     +C+I  V +L  +   TWN+Q+I S+FPP I ++I S+        D ++
Sbjct: 83   RVHKP----PNCEIQFVHELINHDSRTWNVQVISSLFPPDITLQICSIPLSRRVLTDRVI 138

Query: 1233 WPFTSNGMPTVKSIY---KAIIAPLAPA----GNYYMD-WKAIWATPTVPKVKVFLWKCM 1078
            W     G  TVKS Y   ++ + P A A    GN ++  WK +W      KV    W+  
Sbjct: 139  WKPEKRGFYTVKSAYWIARSTVMPNALASTSSGNAFLPLWKKLWKARVPGKVMHCAWRAC 198

Query: 1077 HNRLPTRSYLHHVHITNNAACPRCDAPLEDIHHILLGCANNVHLWEDIFSYLHIQQVPSL 898
            H+ LPTR+ L          C  C  P E   H++  C     + + I    H+     +
Sbjct: 199  HDLLPTRAKLVTKGYEGTLKCLSCPHPCETTAHLVCACP----IAQTILLGSHLNITVLM 254

Query: 897  DSLATVLLSPNNQKSIVQAFRASTIGYAAWLIWKNRNSYIFEGKIKSTTVIFWQSIRMAK 718
             S+         Q + +   +   +    W +W+NRN+ ++  K ++   I   ++    
Sbjct: 255  SSIFNFKEWMLEQATSLSDDKFQKLLMIIWGLWRNRNNMLWSDKQQTAQEIICGTMSWYH 314

Query: 717  EFLNSNQLYVVASHEDSLLACKWGLSPKCRNMKTSVGITWKAPQTNWLYLNTDAAFHCSS 538
            EF   N                    P+ +  KTS  + W  P  + L LN D AF  + 
Sbjct: 315  EFTTINY-------------------PQQKPSKTSQRVKWFPPAVDHLKLNVDGAFMPNE 355

Query: 537  KIAGLGAVLRDSSG 496
               G+G +LRD+ G
Sbjct: 356  TEGGVGGILRDNQG 369


>ref|XP_006469101.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
            sinensis]
          Length = 684

 Score =  131 bits (330), Expect = 7e-28
 Identities = 112/444 (25%), Positives = 194/444 (43%), Gaps = 9/444 (2%)
 Frame = -2

Query: 1557 VPSRRSTCSPIWKQLCMAASRLAPFLCWQVGNGLTIDPWVDNWLIG-GPLNRRAAPIRIV 1381
            +P ++ T   IW+ +    S       W V +G     W+D W    GPL   A      
Sbjct: 244  LPDKQGT--RIWRAIRNTWSATMMGARWAVCDGTRTRFWLDCWATKQGPLINLAIHPVPQ 301

Query: 1380 DSCQISKVKDLTMNGTWNLQLIQSIFPPSIAMEILSLSPPIEDSN-DSILWPFTSNGMPT 1204
            +  + +  + + ++G WN    + +FP S+ ++I S+ PP      D + W +   G  T
Sbjct: 302  ELVKATVSEFINVHGDWNWSAFEHLFPNSVLLQIASVMPPNHLLGVDKLFWRYEPRGNFT 361

Query: 1203 VKSIYKAIIAPLAPAGNYYMDWKAIWATPTVPKVKVFLWKCMHNRLPTRSYLHHVHITNN 1024
            V+S Y+A+      + +    WK  W       V++FLW+ +H +L T+  L   HI  +
Sbjct: 362  VRSAYEALCQ--LDSNDTGTAWKLAWTWKGPQAVRIFLWQALHAKLKTKEELSRRHIPIS 419

Query: 1023 AACPRCDAPLEDIHHILLGCANNVHLWEDIF---SYLHIQQVPSLDSLATVLLSPNNQKS 853
              C RC AP+ED+ H+L  C   + +W  +    ++L   Q    D +   L   N  K 
Sbjct: 420  IGCERCGAPIEDVIHVLRDCQCIMRVWLRLVPARNHLSFFQSTLRDWITANL--QNKWKI 477

Query: 852  IVQAFRASTIGYAAWLIWKNRNSYIFEGKIKSTTVIFWQSIRMAKEFLNSNQLYVVASHE 673
               +      G A W +W  RN ++ +GK+  ++ I+      A E    N      SH 
Sbjct: 478  ASPSTWECIFGVAIWRLWFWRNHFMVDGKLTDSSTIYLDITARANEIHKLNN-----SH- 531

Query: 672  DSLLACKWGLSPKCRNMKTSVGITWKAPQTNWLYLNTDAAFHCSSKIAGLGAVLRDSSGR 493
                     +S + R  +  +G  W  P   W  LNTD +    S+ AG G +LRDS G 
Sbjct: 532  ---------ISQQPRRKEIFIG--WIPPPWPWCKLNTDGSCR-KSEGAGAGGILRDSVGH 579

Query: 492  PLLLTAGCGTV--RNVLEAETLALFRFLKTVKEAFTQPINIQVDSALLALFLNTERHPPW 319
               ++  C  +   +VL AE   L++ L+   +   + + ++VDS  +   ++ +   P 
Sbjct: 580  --WISGFCLNIGESSVLMAELWGLYQGLRIAWDTGIKCLLVEVDSLCVTQMISKQVIVPN 637

Query: 318  YIRGTIAAIKRMLGP--RDSVSHI 253
                 +AA++ ++    R  ++HI
Sbjct: 638  EFYTLVAAVQELVSRNWRIYITHI 661


>gb|EOY25817.1| Non-LTR retroelement reverse transcriptase [Theobroma cacao]
          Length = 874

 Score =  130 bits (328), Expect = 1e-27
 Identities = 105/427 (24%), Positives = 183/427 (42%), Gaps = 11/427 (2%)
 Frame = -2

Query: 1536 CSPIWKQLCMAASRLAPFLCWQVGNGLTIDPWVDNWLIGGPLNRRAAPIRIVDSCQISKV 1357
            CS +WK +          + W +G+G  ++ W+D W+   PL      +  + + + ++V
Sbjct: 451  CSNVWKSMSRLWGEFTKHVRWSIGDGALVNFWIDTWVGEVPLINVVVDMGFMLNLR-ARV 509

Query: 1356 KDLTM-NGTWNLQLIQSIFPPSIAMEILSLSPP-IEDSNDSILWPFTSNGMPTVKSIYKA 1183
            +D  M NG W+ + + SI P  +  +IL + PP +  S D   W  + +G  T+ S Y+ 
Sbjct: 510  RDYIMPNGDWDKERLTSILPIEVVNQILYIIPPTLSASLDMPYWALSPSGYFTISSTYEH 569

Query: 1182 I--IAPLAPAGNYYMDWKAIWATPTVPKVKVFLWKCMHNRLPTRSYLHHVHITNNAACPR 1009
            +  +A      N  M W  +W      +V +FL+ C+H R+ T +      ++++A+CP 
Sbjct: 570  LGSLADSTREENNKM-WHLVWDWKGPHRVCLFLFFCLHKRILTNAERVRRKMSSDASCPH 628

Query: 1008 CDAPLEDIHHILLGCANNVHLWEDIFSYLHIQ---QVPSLDSLATVLLSPNNQKSIVQAF 838
            C    E   H+L  C  +  LW  I     I    Q+P +D L++ L   N    +    
Sbjct: 629  CYGVEETCLHVLRDCLASETLWRRILPESGINQFFQIPLIDWLSSNLNLKN--LYVFDVP 686

Query: 837  RASTIGYAAWLIWKNRNSYIFEGKIKSTTVIFWQSIRMAKEFLNSNQLYVVAS----HED 670
                 G   W  WK  N +IFEG+  S          MA +  N+   Y + S    H++
Sbjct: 687  WNIVFGTTCWYTWKRSNLFIFEGRELSVEGRLNIIRSMAVDSHNTWSTYRIISGGMRHQE 746

Query: 669  SLLACKWGLSPKCRNMKTSVGITWKAPQTNWLYLNTDAAFHCSSKIAGLGAVLRDSSGRP 490
             +L                  + W  P  +W+ +N D AF  +++    G VLRD+ G  
Sbjct: 747  KIL------------------VGWSPPPEDWITVNLDGAFKSAARTTAAGGVLRDAHGTW 788

Query: 489  LLLTAGCGTVRNVLEAETLALFRFLKTVKEAFTQPINIQVDSALLALFLNTERHPPWYIR 310
            ++  A      +V  AE   +++ L+   E   + + +Q D+  +   ++     P    
Sbjct: 789  IVGYACKLETSSVFRAELWGVYKGLQLAWERGFRKVKLQSDNKAVVQAISFSSVHPCSNL 848

Query: 309  GTIAAIK 289
              I AIK
Sbjct: 849  DLIRAIK 855


>ref|XP_006485449.1| PREDICTED: uncharacterized protein LOC102621413 [Citrus sinensis]
          Length = 2303

 Score =  130 bits (326), Expect = 2e-27
 Identities = 117/453 (25%), Positives = 185/453 (40%), Gaps = 10/453 (2%)
 Frame = -2

Query: 1542 STCSPIWKQLCMAASRLAPFLCWQVGNGLTIDPWVDNWLIGGPLNRRAAPIRIVDSCQIS 1363
            S  S IW+ +      +     W++GNG  I  + DNW+      +  +P  +     + 
Sbjct: 879  SNPSFIWRSILWGRQVIQKGARWRIGNGSNILVYKDNWIPRPDTFKPISPPTLPIDTTVG 938

Query: 1362 KVKDLTMNGTWNLQLIQSIFPPSIAMEILSLSPPIEDSNDSILWPFTSNGMPTVKSIYKA 1183
            ++ D   N  WN+  +   F       IL +  P     D ++W +  +G  +VKS Y+ 
Sbjct: 939  ELMDDENN--WNVAKLNQHFMQEDTEAILKIPLPRSQKVDEMMWHYDKHGEYSVKSGYQI 996

Query: 1182 IIAPLAP-----AGNYYMDWKAIWATPTVPKVKVFLWKCMHNRLPTRSYLHHVHITNNAA 1018
             +   AP     +G+    WKA+W+     K+K+F+W+   N LPT   L       +  
Sbjct: 997  ALKLKAPDEPSNSGSNSKRWKAVWSMELPEKMKIFMWRAARNLLPTAENLWKRKCLKDPI 1056

Query: 1017 CPRCDAPLEDIHHILLGCANNVHLWEDIFSYLHIQQVPSLDSLATVLLSPNNQKSIVQAF 838
            C  C+  +E + H LL C     +W    S + I    + D L  +        +  +  
Sbjct: 1057 CQGCNREVETVRHALLDCKAARKIWYHATSSVQISNAQNQDILEFIY---EVWSTWGKTK 1113

Query: 837  RASTIGYAAWLIWKNRNSYIFEGKIKSTTVIFWQSIRMAKEFLNSNQLYVVASHEDSLLA 658
               TI +  W IW  RN  IFEGK          S   A+  L   + Y  A   D    
Sbjct: 1114 AEQTIAF-CWAIWFARNKRIFEGKKSDPRA----SAAKAESLL---EAYHRARKPD---- 1161

Query: 657  CKWGLSPKCRNMKTSVGITWKAPQTNWLYLNTDAAFHCSSKIAGLGAVLRDSSGRPLLLT 478
                 +    N+K  V   W+ P  N+L +N DAA +   ++AGLGAV++D SG+  ++ 
Sbjct: 1162 -----ASHIHNVKRIVQKKWEPPPGNFLKVNVDAAINNRDQVAGLGAVIKDPSGK--IVA 1214

Query: 477  AGCGTV---RNVLEAETLALFRFLKTVKEAFTQPINIQVDSALLALFLNTERHPPWYIRG 307
            AG   V     V  AE  A+   L+  +E     + ++ D   +   LN  +     I  
Sbjct: 1215 AGTKQVPLREGVSFAEAEAMEWGLQIARELSLSALIMETDCKEVVDLLNNTKGSRTGISW 1274

Query: 306  TIAAIKRMLGPRDSVS--HIYREANQVADYLSK 214
             I+ I+        V   HI R  N  A  L+K
Sbjct: 1275 VISDIQEQRRDFKEVKFRHIPRTCNTCAHSLAK 1307


>gb|EOX98014.1| Ribonuclease H protein [Theobroma cacao]
          Length = 528

 Score =  129 bits (325), Expect = 3e-27
 Identities = 116/438 (26%), Positives = 193/438 (44%), Gaps = 12/438 (2%)
 Frame = -2

Query: 1458 LTIDPWVDNWLIGGPLNRRAAPIRIVDSCQISKV--KD-LTMNGTWNLQLIQSIFPPSIA 1288
            ++++ W D WL    L       R+ +S  + KV  +D L  NG W+   +    P  + 
Sbjct: 1    MSVNFWRDKWLSDKTLANITC--RVANSA-LDKVVVRDFLNPNGHWDYDKLSYCLPNEVV 57

Query: 1287 MEILSLSPP-IEDSNDSILWPFTSNGMPTVKSIY---KAIIAPLA--PAGNYYMDWKAIW 1126
            ++++ + PP +  + D   W  +++G  T+ S Y   + + +P    P+G     W+  W
Sbjct: 58   LQVVQIMPPTVTIAQDMPYWGKSASGQFTIASAYDYLRQLSSPTKARPSGI----WQGAW 113

Query: 1125 ATPTVPKVKVFLWKCMHNRLPTRSYLHHVHITNNAACPRCDAPLEDIHHILLGCANNVHL 946
                  +V+ FL++C+H RL T     H  +T ++ CP+C    E + H+L  C     L
Sbjct: 114  KWQGSQRVRTFLFQCLHGRLLTNRKRLHRQLTADSLCPQCRMEDETVTHVLRDCMVATSL 173

Query: 945  WEDIFSYLHIQQVPSLDSLATVLLSPNNQKSIVQAFRASTIGYAAWLIWKNRNSYIFEGK 766
            W+        QQ           L   N  SIV  FR      A W +WK RN  +F+  
Sbjct: 174  WK--------QQ-----------LILGNPWSIV--FR-----LACWYLWKWRNGVVFDVA 207

Query: 765  IKSTTVIFWQSIRMAKEFLNSNQLYVVASHEDSLLACKWGLSPKCRNMKTSVGITWKAPQ 586
               T     + I M K    +    +  S +   +  +       R  K  V I W+APQ
Sbjct: 208  FNPTR----KRISMIKSMATAT---IAPSADFDGVQVE-------RRKKEEVLIEWRAPQ 253

Query: 585  TNWLYLNTDAAFHCSSKIAGLGAVLRDSSGR-PLLLTAGCGTVRNVLEAETLALFRFLKT 409
              W+ LNTD A+  S + A  G V R++ G       A  G   +   AE   +   L+ 
Sbjct: 254  VGWVCLNTDGAYKRSIEEASAGGVKRNAEGDWQAGFVAKLGKC-SAYRAELWGILHGLRL 312

Query: 408  VKEAFTQPINIQVDSALLALFLNTERHPPWYIRGTIAAIKRMLGPRDSVS--HIYREANQ 235
              ++  + + +QVD+ ++   ++T++  P      I+AIK +L     VS  H YRE N 
Sbjct: 313  AWDSGFKKVQVQVDNKMVVQAISTDKLIPGANTDLISAIKNVLQKEWEVSFMHTYREGNM 372

Query: 234  VADYLSKWGSICREDFLI 181
            VADYL+ +  +  E +++
Sbjct: 373  VADYLASYAFVLEESYVV 390


>gb|EOY02864.1| Ribonuclease H protein [Theobroma cacao]
          Length = 660

 Score =  129 bits (324), Expect = 4e-27
 Identities = 109/428 (25%), Positives = 181/428 (42%), Gaps = 9/428 (2%)
 Frame = -2

Query: 1350 LTMNGTWNLQLIQSIFPPSIAMEILSLSPP-IEDSNDSILWPFTSNGMPTVKSIYKAIIA 1174
            L  NG W+   +    P  + ++++   PP +  + D   W  +++G  TV S+Y  +  
Sbjct: 253  LNPNGHWDYDKLSYCLPNEVVLQVVQTMPPTVIIAQDMPYWGESASGQFTVASVYDYLRQ 312

Query: 1173 PLAPAGNYYMD-WKAIWATPTVPKVKVFLWKCMHNRLPTRSYLHHVHITNNAACPRCDAP 997
              +PA       W+  W      +V+ FL++C+H RL T     H  +T ++ CP+C   
Sbjct: 313  LSSPAKARPSGIWQGAWKWQGSQRVRTFLFQCLHGRLLTNRERLHRQLTTDSLCPQCRME 372

Query: 996  LEDIHHILLGCANNVHLWEDIFSYLHIQQVPSLDSLATVLLSPNNQKSIVQAFRASTI-G 820
             E + H+L  C     LW  I    H Q       L   L+S   ++ ++     S + G
Sbjct: 373  DETVTHVLRDCMVATSLWVKIIPQ-HEQNDFFTFPLREWLVSNLQKQQLILGNPWSVVFG 431

Query: 819  YAAWLIWKNRNSYIFEGKIKSTTVIFWQSIRMAKEFLNSNQLYVVASHEDSLLACKWGLS 640
             A W +WK RN  +F      T        R     + S     +A+  D       G+ 
Sbjct: 432  LACWCLWKWRNGVVFYAAFNPT--------RKRISMIKSMATATIATSADF-----DGVQ 478

Query: 639  PKCRNMKTSVGITWKAPQTNWLYLNTDAAFHCSSKIAGLGAVLRDSSG----RPLLLTAG 472
             + R  K  V I W+ PQ  W+ LNTD A+  S + A  G V+R++ G      L     
Sbjct: 479  VE-RRKKEEVLIGWRTPQVGWVCLNTDEAYKRSIEEASTGGVIRNAEGDWQAEFLAKLGK 537

Query: 471  CGTVRNVLEAETLALFRFLKTVKEAFTQPINIQVDSALLALFLNTERHPPWYIRGTIAAI 292
            C   R    AE   +   L+   ++  + + +QVD+ ++   ++T +  P      I AI
Sbjct: 538  CSAYR----AELWGVLHGLRLAWDSGFKKVQVQVDNKMVVPAVSTNKLIPGANTDLIRAI 593

Query: 291  KRMLGPRDSVS--HIYREANQVADYLSKWGSICREDFLIFYPNINDCNLELKEHLRADMY 118
            K +L     VS  H Y E N V DYL+ +  +  + +++    +       ++ L  DM 
Sbjct: 594  KDVLQKEWEVSFMHTYCEGNMVTDYLASYAFVLEKSYIV----LEQAPTGARKLLMYDML 649

Query: 117  SVHFERLI 94
             V   R+I
Sbjct: 650  GVCLPRMI 657


>gb|AAK39575.1|AC025296_10 putative reverse transcriptase [Oryza sativa Japonica Group]
            gi|31433076|gb|AAP54636.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 791

 Score =  128 bits (322), Expect = 6e-27
 Identities = 137/501 (27%), Positives = 199/501 (39%), Gaps = 22/501 (4%)
 Frame = -2

Query: 1587 AKYNPLERGWVPSRRSTCSPIWKQLCMAASRLAPFLCWQVGNGLTIDPWVDNWLIGGPLN 1408
            AKY P       S  S  SP W+ +      L   + W+VGNG +I  W D WL   P +
Sbjct: 297  AKYFPHGSLIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDPWL---PRD 353

Query: 1407 RRAAPIRIVDSCQISKVKDL-TMNGTWNLQLIQSIFPPSIAMEILSLSPPIEDSNDSILW 1231
                PI    +C++  V DL T +G+W++  I   F    A  IL++        D I W
Sbjct: 354  HSRRPITGKANCRLKWVSDLITEDGSWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAW 413

Query: 1230 PFTSNGMPTVKSIYKAII-------APLAPAGNYYMDWKAIWATPTVPKVKVFLWKCMHN 1072
                NGM +V+S Y+          +  +   N    W+ IW      KVK+F W+   N
Sbjct: 414  HPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVASN 473

Query: 1071 RLPTRSYLHHVHITNNAACPRCDAPLEDIHHILLGCANNVHLWEDIFSYLHIQQVPSLDS 892
             L T        +  +  C  CD   ED  H L  C     LW    S +H     S+D 
Sbjct: 474  CLATMVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQASQLW----SCMHKSGSVSVDI 529

Query: 891  LATVL----LSPNNQKSIVQAFRASTIGYAAWLIWKNRNSYIFEGKIKSTTVIFWQSIRM 724
             A+VL    L    +K  +  +  +      W  W  RN  I  GK    T    + I+ 
Sbjct: 530  KASVLGRFWLFDCLEK--IPEYEQAMFLMTLWRNWYVRNELI-HGKSAPPTETSQRFIQS 586

Query: 723  AKEFLNSNQL-----YVVASHEDSLLACKWGLSPKCRNMKTSVGITWKAPQTNWLYLNTD 559
              + L   +       V   H    +  K G  PK R +       W+ P+  W+ LN D
Sbjct: 587  YVDLLFQIRQAPQADLVKGKHVVRTVPLKGG--PKYRVLNNHQP-CWERPKDGWMKLNVD 643

Query: 558  AAFHCSSKIAGLGAVLRDSSGRPLLLTAGCGTV---RNVLEAETLALFRFLKTVKEAFTQ 388
             +F  SS   GLG +LR+S+G   ++   C  +    N LE+E  A    LK        
Sbjct: 644  GSFDASSGKGGLGMILRNSAGD--IIFTSCKPLERCNNPLESELRACVEGLKLAIHWTLL 701

Query: 387  PINIQVDSALLALFLNTERHPPWYIRGTIAAIKRML-GPR-DSVSHIYREANQVADYLSK 214
            PI ++ D A +   L         +   I   + +L G R  S+  I R  N ++ +L+ 
Sbjct: 702  PIQVETDCASVVQLLQGTGRDFSVLANIIHEARHLLVGERVISIKKICRSQNCISHHLA- 760

Query: 213  WGSICREDFLIFYPNINDCNL 151
              +  R DFL  +     CNL
Sbjct: 761  --NTARADFLAGFWLGESCNL 779


>ref|XP_006492749.1| PREDICTED: uncharacterized protein LOC102612946 [Citrus sinensis]
          Length = 589

 Score =  127 bits (319), Expect = 1e-26
 Identities = 121/482 (25%), Positives = 193/482 (40%), Gaps = 12/482 (2%)
 Frame = -2

Query: 1542 STCSPIWKQLCMAASRLAPFLCWQVGNGLTIDPWVDNWLIGGPLNRRAAPIRIVDSCQIS 1363
            S  S IW+ +      L  ++ W++GNG  I     NW+   P      PI +      S
Sbjct: 134  SNPSYIWRSIVWGRHVLQKWIRWRIGNGEKIQIHSSNWI---PKPSTFKPILVQSLPTES 190

Query: 1362 KVKDLT-MNGTWNLQLIQSIFPPSIAMEILSLSPPIEDSNDSILWPFTSNGMPTVKSIYK 1186
            KV +L   N  WN  +I   F    A  I ++  P     D ++W +   G+ +VKS Y+
Sbjct: 191  KVSELLDQNLQWNEIMINQNFAKEDAEIIRNIPLPRTPQEDMVIWHYNKKGIYSVKSGYQ 250

Query: 1185 AIIA---PLAPAGNYY--MDWKAIWATPTVPKVKVFLWKCMHNRLPTRSYLHHVHITNNA 1021
              +      +PAG+      W+ IW      K+K+F+WK   N LP    L    +    
Sbjct: 251  LALKIKFSESPAGSTGAPQGWQHIWRLNLPEKIKIFVWKATKNLLPMAENLWRRKVLKEP 310

Query: 1020 ACPRCDAPLEDIHHILLGCANNVHLWEDIFSYLHIQQVPSLDSLATVLLSPNNQKSIVQA 841
             C  C A  ED+ H L+ C     +W+       ++ V   D L+ ++ + NN       
Sbjct: 311  TCHLCKAGCEDVFHALMECRVARKIWKCTHLENEVKSVIREDMLSVMIGAMNN------- 363

Query: 840  FRASTIGYAA---WLIWKNRNSYIFEGKIKSTTVIFWQSIRMAKEFLNSNQLYVVASHED 670
            +  S + Y A   W+ W  RN  +F+GK          S+   K  +   Q   V   E 
Sbjct: 364  WAKSEVDYVATIWWVAWHARNKLLFQGKKLDPI----GSVAKGKTVMEVYQAQQVKERES 419

Query: 669  SLLACKWGLSPKCRNMKTSVGITWKAPQTNWLYLNTDAAFHCSSKIAGLGAVLRDSSGRP 490
                         RN        W  P  N + +N DAA     K AGLG V+R+  G+ 
Sbjct: 420  H------------RNTVKGKMQIWTPPPNNKVKVNVDAAVKEDRKSAGLGVVIRNHRGQV 467

Query: 489  LLLTAGCGTVR-NVLEAETLALFRFLKTVKEAFTQPINIQVDSALLALFLNTERHPPWYI 313
            L         + N+  AE  A+   ++  K+     + I+ D   +A   N +      I
Sbjct: 468  LAAAVKSMNFQGNIAIAEAHAVKWGMEVAKDLSLSSVIIETDCKNVADLANKKVSNRTEI 527

Query: 312  RGTIAAIKRMLGPRDSVS--HIYREANQVADYLSKWGSICREDFLIFYPNINDCNLELKE 139
              T++ I +       +S  H+ R+ N  A +L+K  ++C  + +I+  N     L + E
Sbjct: 528  LWTMSDIHKSTQDFQLISFQHVPRKCNDFAHFLAK-RALCSSESVIWRNNFPADGLCMAE 586

Query: 138  HL 133
             L
Sbjct: 587  SL 588


>gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1747

 Score =  127 bits (319), Expect = 1e-26
 Identities = 124/481 (25%), Positives = 198/481 (41%), Gaps = 22/481 (4%)
 Frame = -2

Query: 1587 AKYNPLERGWVPSRRSTCSPIWKQLCMAASRLAPFLCWQVGNG----LTIDPWVDNWLIG 1420
            AKY P +        S+ S +W+        L   + W++G+G    + IDPWV      
Sbjct: 1174 AKYFPWDDFMEAELGSSPSYLWRSFLWGRELLRKGVRWRIGDGKEVRVFIDPWVPGLPSF 1233

Query: 1419 GPLNRRAAPIRIVDSCQISKVKDLTMN-GTWNLQLIQSIFPPSIAMEILSLSPPIEDSND 1243
             P+ R+ AP+ +       +V DL  N G WN++ +   F       I S++       D
Sbjct: 1234 RPILRQGAPLFL-------RVSDLLHNNGGWNMEALNYWFTDDECEAISSITVGATRRPD 1286

Query: 1242 SILWPFTSNGMPTVKSIY---------KAIIAPLAPAGNYYMDWKAIWATPTVPKVKVFL 1090
              +W +  NG  TVKS Y         +AI   LAP  N+   WK +W     PK+  FL
Sbjct: 1287 VYMWNYCKNGRYTVKSGYWLACEENREEAINIVLAPR-NF---WKHLWKLKLPPKINHFL 1342

Query: 1089 WKCMHNRLPTRSYLHHVHITNNAACPRCDAPLEDIHHILLGCANNVHLWE--DIFSYLHI 916
            W+C    +P    L   HI ++A+C RC    E   H   GC+  V ++E    +S L  
Sbjct: 1343 WRCSMGFIPCMEVLLWKHIAHSASCFRCQQGRESPVHATWGCSCCVAVFERAGFYSKLSS 1402

Query: 915  QQVPSLDSLATVLLSPNNQKSIVQAFRASTIGYAAWLIWKNRNSYIFEGKIKSTTVIFWQ 736
             Q PS   L     S  +++ +             WL W  RN+   +G +  + +I+  
Sbjct: 1403 GQFPSFIHLLHHAFSTLDKEEL------QLFAVLLWLNWHERNNCYHKGAVVPSDIIYEN 1456

Query: 735  SIRMAKEFLNSNQLYVVASHEDSLLACKWGLSPKCRNMKTSVGI-TWKAPQTNWLYLNTD 559
             ++  K F  +             L C+ G+  K         +  W+AP +  L +N D
Sbjct: 1457 GVKFLKCFKEA-------------LGCRAGVEVKAVEEVVPGSLRRWQAPSSGQLKVNCD 1503

Query: 558  AAFHCSSKIAGLGAVLRDSSGRPLLLTAGCGTVR---NVLEAETLALFRFLKTVKEAFTQ 388
             A +   +  G G ++RD  G   L+ AG    +   + L AE LA+   L  V E   +
Sbjct: 1504 GAANFKDRCFGGGTIIRDEFGS--LIVAGGKNFQHPVSSLVAELLAIKVGLDLVVERRLR 1561

Query: 387  PINIQVDSALLALFLNTERHPPWYIRGTIAAIKRMLG--PRDSVSHIYREANQVADYLSK 214
             I ++ D       LN++        G +  I+  +      S+ H+ RE N  A  ++K
Sbjct: 1562 NIMVESDCLEAIHLLNSKERCLAPEGGLVEDIQNTMALVNISSIYHVRREGNTAAHAIAK 1621

Query: 213  W 211
            +
Sbjct: 1622 F 1622


>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 773

 Score =  127 bits (319), Expect = 1e-26
 Identities = 96/314 (30%), Positives = 137/314 (43%), Gaps = 17/314 (5%)
 Frame = -2

Query: 1587 AKYNPLERGWVPSRRSTCSPIWKQLCMAASRLAPFLCWQVGNGLTIDPWVDNWLIGGPLN 1408
            AKY P ER       S  S  WK +      ++  L +  GNG  I  W DNWL   PLN
Sbjct: 342  AKYFPKERLLDAKATSQSSYAWKSILHGTKLISRGLKYIAGNGNNIQLWKDNWL---PLN 398

Query: 1407 RRAAPIRIVDSCQIS-KVKDLTMNGTWNLQLIQSIFPPSIAMEILSLSPPIEDSNDSILW 1231
                P+   DS     KV DL + G WN  L+  +   +    I ++ P I  +ND+I W
Sbjct: 399  PPRPPVGTCDSIYSQLKVSDLLIEGRWNEDLLCKLIHQNDIPHIRAIRPSITGANDAITW 458

Query: 1230 PFTSNGMPTVKSIYKAI---------IAPLAPAGNYYMDWKAIWATPTVPKVKVFLWKCM 1078
             +T +G  +VKS Y  +           P     +    +  IW     PK+K F W+  
Sbjct: 459  IYTHDGNYSVKSGYHLLRKLSQQQHASLPSPNEVSAQTVFTNIWKQNAPPKIKHFWWRSA 518

Query: 1077 HNRLPTRSYLHHVHITNNAACPRCDAPLEDIHHILLGCANNVHLWEDIFSYLHIQQVPSL 898
            HN LPT   L    +  +  C RC    ED++H+L  C  +  +WE      HI+  P  
Sbjct: 519  HNALPTAGNLKRRRLITDDTCQRCGEASEDVNHLLFQCRVSKEIWEQ----AHIKLCPG- 573

Query: 897  DSLATVLLSPNNQ--KSIVQAFR--ASTIGYAAWLIWKNRNSYIFEGKIKSTTVIFWQSI 730
            DSL +   + N +  + + Q+ R   S   +  W IWK RN  IF  K  S      +++
Sbjct: 574  DSLMSNSFNQNLESIQKLNQSARKDVSLFPFIGWRIWKMRNDLIFNNKRWSIPDSIQKAL 633

Query: 729  ---RMAKEFLNSNQ 697
               +  KE LN N+
Sbjct: 634  IDQQQWKESLNCNE 647


>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
          Length = 1366

 Score =  125 bits (314), Expect = 5e-26
 Identities = 120/464 (25%), Positives = 189/464 (40%), Gaps = 13/464 (2%)
 Frame = -2

Query: 1545 RSTCSPIWKQLCMAASRLAPFLCWQVGNGLTIDPWVDNWLIGGPLNRRAAPIRIVDSCQI 1366
            +S CS  W+ +      LA  + W VGNG  I+ W D W+  GPL      I       I
Sbjct: 905  QSNCSWGWRSIMKGKDVLAGAIKWNVGNGRKINFWNDWWVGDGPLASNTDCINQPHMTDI 964

Query: 1365 SKVKDL-TMNGTWNLQLIQSIFPPSIAMEILSLSPPI--EDSNDSILWPFTSNGMPTVKS 1195
             KV+DL T    W+   + +I P ++ ++++  +P     +  D + WP ++ GM TV S
Sbjct: 965  -KVEDLITSQRRWDTGALHNILPTNM-IDMVRATPIAINSEQEDFLSWPHSTTGMVTVSS 1022

Query: 1194 IYKAIIAPLAPAGNYYMDWKAIWATPTVPKVKVFLWKCMHNRLPTRSYLHHVHITNNAAC 1015
             Y  I        ++  DW  IW      K+K+F+WK + N L          + + A+C
Sbjct: 1023 AYSLIAGHDGDDRSH--DW--IWRATCTEKIKLFMWKIVKNGLMVNVERKRRGLADAASC 1078

Query: 1014 PRCDAPLEDIHHILLGCANNVHLWEDIFSYLHIQQVPSLDSLATVLLSPNNQKSIVQAFR 835
            P C    E + H+   C      W+     L  Q    L   + +  + ++Q+    +  
Sbjct: 1079 PVCGEEDETLDHLFRRCLLAEACWDSAVPPLTFQTSNHLHMHSWMKAACSSQQKDGYSTN 1138

Query: 834  ASTI-GYAAWLIWKNRNSYIFEGKIKSTTVIFWQSIRMAKEFLNSNQLYVVASHEDSLLA 658
             S I  Y  W +WK RN  +F+  I + + I              N+ ++ +S    LLA
Sbjct: 1139 WSLIFPYILWNLWKARNRLVFDNNITAPSDIL-------------NRSFMESSEARCLLA 1185

Query: 657  CKWGLSPKCRNMKTSVGITWKAPQTNWLYLNTDAAFHCSSKIAGLGAVLRDSSGRPLL-L 481
             + GL    +       + W  P   +  LN+D A    S +A  G +LR+ +G  +   
Sbjct: 1186 KRTGLQTAFQTW-----VVWSPPAAGFTKLNSDGACKSHSHLASAGGLLRNENGLWVAGY 1240

Query: 480  TAGCGTVRNVLEAETLALFRFLKTVKEAFTQPINIQVDSALLALFLNTERHPPWYIRGTI 301
            T   GT  + L AE   L   L   K      +  + DS  +   L  +          +
Sbjct: 1241 TCNIGTANSFL-AELWGLREGLLLAKNRGFTKLIAETDSEAVVQVLRKDGPVTPDASILV 1299

Query: 300  AAIKRMLG--PRDSVSHIYREANQVADYL------SKWGSICRE 193
               K +L       V+HI RE NQ AD+L      S WG+   E
Sbjct: 1300 KDCKLLLDHFQEIKVTHILREGNQCADFLANLGQSSSWGTTILE 1343


>emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1357

 Score =  125 bits (314), Expect = 5e-26
 Identities = 92/347 (26%), Positives = 147/347 (42%), Gaps = 3/347 (0%)
 Frame = -2

Query: 1524 WKQLCMAASRLAPFLCWQVGNGLTIDPWVDNWLIGGPLNRRAAPIRIVDSCQISKVKDLT 1345
            W+ +  A S +   L W+VG+G  ID W   W +G    R     R+     +  + D+ 
Sbjct: 915  WRSIWGAKSLVLEGLIWRVGDGTKIDIWSAPW-VGDEEGRFIKSARVEGLEVVGDLMDVE 973

Query: 1344 MNGTWNLQLIQSIFPPSIAMEILSLSPPIEDSNDSILWPFTSNGMPTVKSIYKAIIAPLA 1165
                WN++LI+  F       IL++        D + W ++ +G  +VK+ Y      L 
Sbjct: 974  RK-EWNVELIERHFNERDQQCILAIPLSTRCLQDELTWAYSKDGTYSVKTAYM-----LG 1027

Query: 1164 PAGN---YYMDWKAIWATPTVPKVKVFLWKCMHNRLPTRSYLHHVHITNNAACPRCDAPL 994
              GN   ++  W  +W+    PKV+ FLW+   + LP R  L   H+ + A CP C    
Sbjct: 1028 KGGNLDDFHRVWNILWSLNVSPKVRHFLWRACTSSLPVRKVLQRRHLIDEAGCPCCARED 1087

Query: 993  EDIHHILLGCANNVHLWEDIFSYLHIQQVPSLDSLATVLLSPNNQKSIVQAFRASTIGYA 814
            E   H+   C  ++ LWE++ SY+ +  +       T++        +VQ        Y 
Sbjct: 1088 ETQFHLFYRCPMSLKLWEELGSYILLPGIEDEAMCDTLVRWSQMDAKVVQKG-----CYI 1142

Query: 813  AWLIWKNRNSYIFEGKIKSTTVIFWQSIRMAKEFLNSNQLYVVASHEDSLLACKWGLSPK 634
             W +W  RN  +FE   +  TV+  + +R  ++F N    Y V  +    +     LSP 
Sbjct: 1143 LWNVWVERNRRVFEHTSQPATVVGQRIMRQVEDFNN----YAVKIYGG--MRSSAALSPS 1196

Query: 633  CRNMKTSVGITWKAPQTNWLYLNTDAAFHCSSKIAGLGAVLRDSSGR 493
                       W AP    + LNTDA+        GLG + RDS G+
Sbjct: 1197 ----------RWYAPPVGAIKLNTDASL-AEEGWVGLGVIARDSEGK 1232


>gb|EMJ20613.1| hypothetical protein PRUPE_ppa021915mg, partial [Prunus persica]
          Length = 509

 Score =  125 bits (313), Expect = 7e-26
 Identities = 93/371 (25%), Positives = 158/371 (42%), Gaps = 7/371 (1%)
 Frame = -2

Query: 1587 AKYNPLERGWVPSRRSTCSPIWKQLCMAASRLAPFLCWQVGNGLTIDPWVDNWLIGGPLN 1408
            A+Y P    W        S  W  L      +      Q+ NG   + WVD WL   P N
Sbjct: 90   ARYFPDSDFWNAEVGHRASWAWASLIEERDTVLRHARKQIFNGAETNIWVDRWL-KLPHN 148

Query: 1407 RRAAPIRIVDSCQISKVKDLT--MNGTWNLQLIQSIFPPSIAMEILSLSPPIEDSNDSIL 1234
                P R + +     ++++   +  +W+L  +           ILSL   I    D  +
Sbjct: 149  DVIVPTRPLSANTPIFLEEIMNKLERSWDLSRVSLFLDQETIRCILSLPIGISSLPDRWI 208

Query: 1233 WPFTSNGMPTVKSIYKAIIAPLAPAGNYYMD---WKAIWATPTVPKVKVFLWKCMHNRLP 1063
            WP+TSNG  +VKS    I+ P  P  ++ +    WK +W   ++PK+K F W+ + N + 
Sbjct: 209  WPWTSNGEYSVKS---GIVGP--PQTSHVVSTQVWKGLWKLKSLPKIKFFCWRILSNAIA 263

Query: 1062 TRSYLHHVHITNNAACPRCDAPLEDIHHILLGCANNVHLW--EDIFSYLHIQQVPSLDSL 889
            T+  L    I+ +  CP C+   E + H+ L C     +W    +   +H Q + + D+ 
Sbjct: 264  TKLNLFKRKISQSPMCPVCENNEESVEHLFLLCPWTAAVWFGSPLNYRVHNQSITTFDNW 323

Query: 888  ATVLLSPNNQKSIVQAFRASTIGYAAWLIWKNRNSYIFEGKIKSTTVIFWQSIRMAKEFL 709
               +   N    + +    + I +  W IWK R  ++ EG+      +  Q++R A EF+
Sbjct: 324  LNSMFQLNLTSILDRNRLMTIISFILWEIWKARCKFVIEGRQLHPIHVLHQAMRAANEFI 383

Query: 708  NSNQLYVVASHEDSLLACKWGLSPKCRNMKTSVGITWKAPQTNWLYLNTDAAFHCSSKIA 529
             +N      S   +L++ +                 W  P   ++ +NTDAA+   S  +
Sbjct: 384  EANVSQSTHSDYVTLISTR----------------AWTPPSDGFVKVNTDAAWIKESNRS 427

Query: 528  GLGAVLRDSSG 496
             +G V+RDS+G
Sbjct: 428  AVGVVIRDSAG 438