BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Stemona21_contig00021956
         (657 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532948.1| RNA polymerase II transcription factor B sub...   116   5e-24
ref|XP_002307429.2| basal transcription factor complex subunit-r...   113   4e-23
ref|XP_004290858.1| PREDICTED: general transcription factor IIH ...   106   5e-21
ref|XP_004290857.1| PREDICTED: general transcription factor IIH ...   106   5e-21
ref|XP_006472762.1| PREDICTED: general transcription factor IIH ...   105   9e-21
ref|XP_006434174.1| hypothetical protein CICLE_v100020021mg, par...   105   9e-21
gb|EOY16262.1| Basal transcription factor complex subunit-relate...   104   2e-20
gb|EOY16261.1| Basal transcription factor complex subunit-relate...   104   2e-20
gb|EMJ24450.1| hypothetical protein PRUPE_ppa009386mg [Prunus pe...   104   3e-20
ref|XP_002284465.1| PREDICTED: general transcription factor IIH ...   104   3e-20
ref|XP_006305456.1| hypothetical protein CARUB_v10009867mg [Caps...   102   8e-20
ref|XP_006416613.1| hypothetical protein EUTSA_v10008316mg [Eutr...   102   1e-19
ref|XP_004170865.1| PREDICTED: general transcription factor IIH ...   100   4e-19
ref|XP_004152842.1| PREDICTED: general transcription factor IIH ...   100   4e-19
ref|XP_003573866.1| PREDICTED: general transcription factor IIH ...   100   4e-19
ref|NP_564050.1| basal transcription factor complex subunit-rela...   100   5e-19
ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arab...    98   2e-18
dbj|BAK06937.1| predicted protein [Hordeum vulgare subsp. vulgare]     98   2e-18
ref|NP_001131186.1| hypothetical protein [Zea mays] gi|194688300...    97   5e-18
ref|XP_004952041.1| PREDICTED: general transcription factor IIH ...    96   9e-18

>ref|XP_002532948.1| RNA polymerase II transcription factor B subunit, putative [Ricinus
           communis] gi|223527277|gb|EEF29432.1| RNA polymerase II
           transcription factor B subunit, putative [Ricinus
           communis]
          Length = 266

 Score =  116 bits (291), Expect = 5e-24
 Identities = 67/161 (41%), Positives = 86/161 (53%), Gaps = 7/161 (4%)
 Frame = -2

Query: 464 KLYXXXXXXXXXXXXVNPFFWSGGAAVHHPAAVLPFSKLLSHVIPFXXXXXXXXXXXXXX 285
           KLY             NPFFW+  +        LPFS+ LSHV+ F              
Sbjct: 7   KLYSDDVSLVMVLLDTNPFFWTTSS--------LPFSQFLSHVLAFLNSILLLNQLNQVV 58

Query: 284 LIAAGVHTCGYIYDXXXXXXAE-----VPAVRAEILRKLEEFVARDRRLGEGDE--RTXX 126
           +IA G ++C YIYD             +PA+ +++L+KLE+F+ RD +LG+G+E  R   
Sbjct: 59  VIANGYNSCDYIYDSSLVMNHSSDEGRIPALYSDLLQKLEDFMIRDEKLGKGEESKRKIA 118

Query: 125 XXXXXXXXXXXLCYIQRVFRSGALHPQPRILCLQGSPDGPE 3
                      LCYIQR+FRSG LHPQPRILCLQGSPDGPE
Sbjct: 119 SSLLSGSLSMALCYIQRIFRSGPLHPQPRILCLQGSPDGPE 159


>ref|XP_002307429.2| basal transcription factor complex subunit-related family protein
           [Populus trichocarpa] gi|550339079|gb|EEE94425.2| basal
           transcription factor complex subunit-related family
           protein [Populus trichocarpa]
          Length = 298

 Score =  113 bits (283), Expect = 4e-23
 Identities = 67/161 (41%), Positives = 84/161 (52%), Gaps = 7/161 (4%)
 Frame = -2

Query: 464 KLYXXXXXXXXXXXXVNPFFWSGGAAVHHPAAVLPFSKLLSHVIPFXXXXXXXXXXXXXX 285
           KLY             NPFFW+       P + L FS+ LSHV+ F              
Sbjct: 7   KLYSDDVSLVVVLLDTNPFFWT-------PPSSLSFSQFLSHVLAFVNSILLLNQLNQVV 59

Query: 284 LIAAGVHTCGYIYDXXXXXXA------EVPAVRAEILRKLEEFVARDRRLG-EGDERTXX 126
           +IA+G +TC YIYD              +P++ + +L+KLEEF+ +D +LG E  +R   
Sbjct: 60  VIASGYNTCDYIYDSSSDASQLGSEDGRMPSLYSNLLQKLEEFMIKDEKLGKEQSQRAIK 119

Query: 125 XXXXXXXXXXXLCYIQRVFRSGALHPQPRILCLQGSPDGPE 3
                      LCYIQRVFRSG LHPQPRILCLQGSPDGPE
Sbjct: 120 SSLLSGSLSMALCYIQRVFRSGPLHPQPRILCLQGSPDGPE 160


>ref|XP_004290858.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
           2 [Fragaria vesca subsp. vesca]
          Length = 298

 Score =  106 bits (265), Expect = 5e-21
 Identities = 66/160 (41%), Positives = 78/160 (48%), Gaps = 6/160 (3%)
 Frame = -2

Query: 464 KLYXXXXXXXXXXXXVNPFFWSGGAAVHHPAAVLPFSKLLSHVIPFXXXXXXXXXXXXXX 285
           KLY             NPFFWS  +        LPFSK LSHV+ F              
Sbjct: 7   KLYADDVSLLMVLLDTNPFFWSSSS--------LPFSKYLSHVLTFLNSILLLNQLNQVV 58

Query: 284 LIAAGVHTCGYIYDXXXXXXA-----EVPAVRAEILRKLEEFVARDRRL-GEGDERTXXX 123
           +IA G  +C YIYD             +PA+ + +L+KLEEFVA+D +L  EG       
Sbjct: 59  VIATGYSSCSYIYDSASAPGQGSDQGRMPALCSHLLKKLEEFVAKDEQLLKEGSAEGIPS 118

Query: 122 XXXXXXXXXXLCYIQRVFRSGALHPQPRILCLQGSPDGPE 3
                     LCYIQ+VFRSG  HP PRILCLQGS DGPE
Sbjct: 119 SLLSGSLSMALCYIQKVFRSGPQHPHPRILCLQGSSDGPE 158


>ref|XP_004290857.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
           1 [Fragaria vesca subsp. vesca]
          Length = 300

 Score =  106 bits (265), Expect = 5e-21
 Identities = 66/160 (41%), Positives = 78/160 (48%), Gaps = 6/160 (3%)
 Frame = -2

Query: 464 KLYXXXXXXXXXXXXVNPFFWSGGAAVHHPAAVLPFSKLLSHVIPFXXXXXXXXXXXXXX 285
           KLY             NPFFWS  +        LPFSK LSHV+ F              
Sbjct: 7   KLYADDVSLLMVLLDTNPFFWSSSS--------LPFSKYLSHVLTFLNSILLLNQLNQVV 58

Query: 284 LIAAGVHTCGYIYDXXXXXXA-----EVPAVRAEILRKLEEFVARDRRL-GEGDERTXXX 123
           +IA G  +C YIYD             +PA+ + +L+KLEEFVA+D +L  EG       
Sbjct: 59  VIATGYSSCSYIYDSASAPGQGSDQGRMPALCSHLLKKLEEFVAKDEQLLKEGSAEGIPS 118

Query: 122 XXXXXXXXXXLCYIQRVFRSGALHPQPRILCLQGSPDGPE 3
                     LCYIQ+VFRSG  HP PRILCLQGS DGPE
Sbjct: 119 SLLSGSLSMALCYIQKVFRSGPQHPHPRILCLQGSSDGPE 158


>ref|XP_006472762.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
           X1 [Citrus sinensis]
          Length = 298

 Score =  105 bits (263), Expect = 9e-21
 Identities = 64/160 (40%), Positives = 81/160 (50%), Gaps = 6/160 (3%)
 Frame = -2

Query: 464 KLYXXXXXXXXXXXXVNPFFWSGGAAVHHPAAVLPFSKLLSHVIPFXXXXXXXXXXXXXX 285
           KLY             NPFFWS  +        L FS+ L+HV+ F              
Sbjct: 7   KLYSDDVSLVVVLLDTNPFFWSSSS--------LSFSQFLTHVLAFFNAILTLNQLNQVV 58

Query: 284 LIAAGVHTCGYIYDXXXXXXAEV-----PAVRAEILRKLEEFVARDRRLGEGD-ERTXXX 123
           +IA G ++C Y+YD        V     P++ A +L+ LEEF+ +D +LG+ + E     
Sbjct: 59  VIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIAC 118

Query: 122 XXXXXXXXXXLCYIQRVFRSGALHPQPRILCLQGSPDGPE 3
                     LCYIQRVFRSG LHPQPRILCLQGSPDGPE
Sbjct: 119 SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPE 158


>ref|XP_006434174.1| hypothetical protein CICLE_v100020021mg, partial [Citrus
           clementina] gi|557536296|gb|ESR47414.1| hypothetical
           protein CICLE_v100020021mg, partial [Citrus clementina]
          Length = 174

 Score =  105 bits (263), Expect = 9e-21
 Identities = 64/160 (40%), Positives = 81/160 (50%), Gaps = 6/160 (3%)
 Frame = -2

Query: 464 KLYXXXXXXXXXXXXVNPFFWSGGAAVHHPAAVLPFSKLLSHVIPFXXXXXXXXXXXXXX 285
           KLY             NPFFWS  +        L FS+ L+HV+ F              
Sbjct: 7   KLYSDDVSLVVVLLDTNPFFWSSSS--------LSFSQFLTHVLAFLNAILTLNQLNQVV 58

Query: 284 LIAAGVHTCGYIYDXXXXXXAEV-----PAVRAEILRKLEEFVARDRRLGEGD-ERTXXX 123
           +IA G ++C Y+YD        V     P++ A +L+ LEEF+ +D +LG+ + E     
Sbjct: 59  VIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIAC 118

Query: 122 XXXXXXXXXXLCYIQRVFRSGALHPQPRILCLQGSPDGPE 3
                     LCYIQRVFRSG LHPQPRILCLQGSPDGPE
Sbjct: 119 SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPE 158


>gb|EOY16262.1| Basal transcription factor complex subunit-related isoform 2
           [Theobroma cacao]
          Length = 274

 Score =  104 bits (260), Expect = 2e-20
 Identities = 65/160 (40%), Positives = 80/160 (50%), Gaps = 6/160 (3%)
 Frame = -2

Query: 464 KLYXXXXXXXXXXXXVNPFFWSGGAAVHHPAAVLPFSKLLSHVIPFXXXXXXXXXXXXXX 285
           KLY             NPFFWS        A+ L FS+ LSHV+ F              
Sbjct: 7   KLYADDVSLVVVLVDTNPFFWS--------ASSLSFSQFLSHVLAFLNAILTLNQLNQVV 58

Query: 284 LIAAGVHTCGYIYDXXXXXXAE-----VPAVRAEILRKLEEFVARDRRLG-EGDERTXXX 123
           +IA G ++C YI+D             +P + + +L+KLEEF+ +D +L  E  E     
Sbjct: 59  VIATGYNSCNYIFDSSSDLNQSFENGRMPVMCSSLLQKLEEFLIKDEQLSKEVPEGRIKS 118

Query: 122 XXXXXXXXXXLCYIQRVFRSGALHPQPRILCLQGSPDGPE 3
                     LCYIQRVFRSGALHP PRILCLQGSPDGPE
Sbjct: 119 SLLSGSLSMALCYIQRVFRSGALHPHPRILCLQGSPDGPE 158


>gb|EOY16261.1| Basal transcription factor complex subunit-related isoform 1
           [Theobroma cacao]
          Length = 296

 Score =  104 bits (260), Expect = 2e-20
 Identities = 65/160 (40%), Positives = 80/160 (50%), Gaps = 6/160 (3%)
 Frame = -2

Query: 464 KLYXXXXXXXXXXXXVNPFFWSGGAAVHHPAAVLPFSKLLSHVIPFXXXXXXXXXXXXXX 285
           KLY             NPFFWS        A+ L FS+ LSHV+ F              
Sbjct: 7   KLYADDVSLVVVLVDTNPFFWS--------ASSLSFSQFLSHVLAFLNAILTLNQLNQVV 58

Query: 284 LIAAGVHTCGYIYDXXXXXXAE-----VPAVRAEILRKLEEFVARDRRLG-EGDERTXXX 123
           +IA G ++C YI+D             +P + + +L+KLEEF+ +D +L  E  E     
Sbjct: 59  VIATGYNSCNYIFDSSSDLNQSFENGRMPVMCSSLLQKLEEFLIKDEQLSKEVPEGRIKS 118

Query: 122 XXXXXXXXXXLCYIQRVFRSGALHPQPRILCLQGSPDGPE 3
                     LCYIQRVFRSGALHP PRILCLQGSPDGPE
Sbjct: 119 SLLSGSLSMALCYIQRVFRSGALHPHPRILCLQGSPDGPE 158


>gb|EMJ24450.1| hypothetical protein PRUPE_ppa009386mg [Prunus persica]
          Length = 295

 Score =  104 bits (259), Expect = 3e-20
 Identities = 67/160 (41%), Positives = 76/160 (47%), Gaps = 6/160 (3%)
 Frame = -2

Query: 464 KLYXXXXXXXXXXXXVNPFFWSGGAAVHHPAAVLPFSKLLSHVIPFXXXXXXXXXXXXXX 285
           KLY             NPFFWS  +        LPFS  LSHV+ F              
Sbjct: 7   KLYADDVSLLMVLLDTNPFFWSSSS--------LPFSVFLSHVLTFLNSILLLNQLNQVV 58

Query: 284 LIAAGVHTCGYIYDXXXXXXA-----EVPAVRAEILRKLEEFVARDRRL-GEGDERTXXX 123
           +IA G ++C YIYD             +PA    +L+KLEEFV  D +L  EG       
Sbjct: 59  VIATGYNSCSYIYDSSTSTNQGSDNGRMPARCVNLLQKLEEFVIEDEQLIKEGLREGIAS 118

Query: 122 XXXXXXXXXXLCYIQRVFRSGALHPQPRILCLQGSPDGPE 3
                     LCYIQRVFRSG LHPQPRILCLQGS DGPE
Sbjct: 119 SLLSGSLSMALCYIQRVFRSGPLHPQPRILCLQGSSDGPE 158


>ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis
           vinifera] gi|302141830|emb|CBI19033.3| unnamed protein
           product [Vitis vinifera]
          Length = 297

 Score =  104 bits (259), Expect = 3e-20
 Identities = 66/161 (40%), Positives = 79/161 (49%), Gaps = 7/161 (4%)
 Frame = -2

Query: 464 KLYXXXXXXXXXXXXVNPFFWSGGAAVHHPAAVLPFSKLLSHVIPFXXXXXXXXXXXXXX 285
           KLY             NPFFWS         A LPFSK LSHV+ F              
Sbjct: 7   KLYSDDVSLLVVLLDTNPFFWS--------TASLPFSKFLSHVLAFLNSILLINQLNQVV 58

Query: 284 LIAAGVHTCGYIYDXXXXXXA------EVPAVRAEILRKLEEFVARDRRLG-EGDERTXX 126
           +IA G ++C +I+D              +PA+ + +L+KLEEFV  D +L  E       
Sbjct: 59  VIATGCNSCNFIFDSSSVPANPNLENGRMPALCSNLLQKLEEFVTGDEKLSKEVLAAGIG 118

Query: 125 XXXXXXXXXXXLCYIQRVFRSGALHPQPRILCLQGSPDGPE 3
                      LCYIQRVFR+G LHPQPRILCLQGSPDGPE
Sbjct: 119 SSLLSGSLSMALCYIQRVFRTGPLHPQPRILCLQGSPDGPE 159


>ref|XP_006305456.1| hypothetical protein CARUB_v10009867mg [Capsella rubella]
           gi|482574167|gb|EOA38354.1| hypothetical protein
           CARUB_v10009867mg [Capsella rubella]
          Length = 301

 Score =  102 bits (255), Expect = 8e-20
 Identities = 63/148 (42%), Positives = 74/148 (50%), Gaps = 10/148 (6%)
 Frame = -2

Query: 416 NPFFWSGGAAVHHPAAVLPFSKLLSHVIPFXXXXXXXXXXXXXXLIAAGVHTCGYIYDXX 237
           NPFFWS           + FS+ LSHV+ F              +IA G  +C YIYD  
Sbjct: 23  NPFFWS--------TTSITFSQFLSHVLAFLNAVLGLNQLNQVVVIATGYSSCEYIYDSS 74

Query: 236 XXXXAE--------VPAVRAEILRKLEEFVARDRRLG--EGDERTXXXXXXXXXXXXXLC 87
                         +P + A +L KLE+FV +D  L   EG+E               LC
Sbjct: 75  LTSNHGSFERDRTGMPPLFASLLNKLEDFVTKDEELSREEGNEDRTPSCLLSGSLSMALC 134

Query: 86  YIQRVFRSGALHPQPRILCLQGSPDGPE 3
           YIQRVFRSG LHPQPRILCLQGSPDGPE
Sbjct: 135 YIQRVFRSGHLHPQPRILCLQGSPDGPE 162


>ref|XP_006416613.1| hypothetical protein EUTSA_v10008316mg [Eutrema salsugineum]
           gi|557094384|gb|ESQ34966.1| hypothetical protein
           EUTSA_v10008316mg [Eutrema salsugineum]
          Length = 300

 Score =  102 bits (254), Expect = 1e-19
 Identities = 63/163 (38%), Positives = 76/163 (46%), Gaps = 9/163 (5%)
 Frame = -2

Query: 464 KLYXXXXXXXXXXXXVNPFFWSGGAAVHHPAAVLPFSKLLSHVIPFXXXXXXXXXXXXXX 285
           KLY             NPFFWS           + FS+ LSHV+ F              
Sbjct: 7   KLYSDDVSLLVLLLDTNPFFWS--------TTSIKFSQFLSHVLAFLNAVLGLNQLNQVV 58

Query: 284 LIAAGVHTCGYIYDXXXXXXAE-------VPAVRAEILRKLEEFVARDRRLGEGDERTXX 126
           +IA G  +C YIYD               +PA+   +L KLE+F A+D  L + +E    
Sbjct: 59  VIATGYSSCDYIYDSSLTPNGNFESSGSGMPALFGSLLEKLEDFAAKDEELSKEEEHEDR 118

Query: 125 XXXXXXXXXXXL--CYIQRVFRSGALHPQPRILCLQGSPDGPE 3
                      +  CYIQRVFRSG LHPQPRILCLQGSPDGPE
Sbjct: 119 IASSLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPE 161


>ref|XP_004170865.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
           sativus]
          Length = 187

 Score =  100 bits (249), Expect = 4e-19
 Identities = 63/160 (39%), Positives = 77/160 (48%), Gaps = 6/160 (3%)
 Frame = -2

Query: 464 KLYXXXXXXXXXXXXVNPFFWSGGAAVHHPAAVLPFSKLLSHVIPFXXXXXXXXXXXXXX 285
           KLY             NPFFWS  A        LPFSK LSHV+ F              
Sbjct: 7   KLYADDVSLLVVLLDTNPFFWSTSA--------LPFSKFLSHVLAFLNSILVLNQLNEVV 58

Query: 284 LIAAGVHTCGYIYDXXXXXXA-----EVPAVRAEILRKLEEFVARDRR-LGEGDERTXXX 123
           +I  G  +C Y+Y+             +PA+   +L+ LEEFV  D + + E  +     
Sbjct: 59  VIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMS 118

Query: 122 XXXXXXXXXXLCYIQRVFRSGALHPQPRILCLQGSPDGPE 3
                     LCYIQ+VFRSG+LHPQPRILCLQGSPDGPE
Sbjct: 119 SLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPE 158


>ref|XP_004152842.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
           sativus]
          Length = 295

 Score =  100 bits (249), Expect = 4e-19
 Identities = 63/160 (39%), Positives = 77/160 (48%), Gaps = 6/160 (3%)
 Frame = -2

Query: 464 KLYXXXXXXXXXXXXVNPFFWSGGAAVHHPAAVLPFSKLLSHVIPFXXXXXXXXXXXXXX 285
           KLY             NPFFWS  A        LPFSK LSHV+ F              
Sbjct: 7   KLYADDVSLLVVLLDTNPFFWSTSA--------LPFSKFLSHVLAFLNSILVLNQLNEVV 58

Query: 284 LIAAGVHTCGYIYDXXXXXXA-----EVPAVRAEILRKLEEFVARDRR-LGEGDERTXXX 123
           +I  G  +C Y+Y+             +PA+   +L+ LEEFV  D + + E  +     
Sbjct: 59  VIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMS 118

Query: 122 XXXXXXXXXXLCYIQRVFRSGALHPQPRILCLQGSPDGPE 3
                     LCYIQ+VFRSG+LHPQPRILCLQGSPDGPE
Sbjct: 119 SLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPE 158


>ref|XP_003573866.1| PREDICTED: general transcription factor IIH subunit 3-like
           [Brachypodium distachyon]
          Length = 290

 Score =  100 bits (249), Expect = 4e-19
 Identities = 63/160 (39%), Positives = 76/160 (47%), Gaps = 6/160 (3%)
 Frame = -2

Query: 464 KLYXXXXXXXXXXXXVNPFFWSGGAAVHHPAAVLPFSKLLSHVIPFXXXXXXXXXXXXXX 285
           KLY             NPFFW+G A        LPF+    H+I F              
Sbjct: 7   KLYSDDVSLVVVIVDTNPFFWAGAA--------LPFADFFGHLIHFVNSLLLLNHLNQVV 58

Query: 284 LIAAGVHTCGYIYDXXXXXXA---EVPAVRAEILRKLEEFVARDRRLGEGDERTXXXXXX 114
           +IAAGV +C Y++D      +   +V A  A+  RK+EEFV +D R   G+         
Sbjct: 59  VIAAGVSSCAYVFDSGNAAASGSPDVAATFAKASRKVEEFVKQDARDTAGNGTVAGGGAA 118

Query: 113 XXXXXXXL---CYIQRVFRSGALHPQPRILCLQGSPDGPE 3
                      CYIQRVFRSG  HPQPRILCLQGSPDGPE
Sbjct: 119 SLFSGALSLALCYIQRVFRSGTRHPQPRILCLQGSPDGPE 158


>ref|NP_564050.1| basal transcription factor complex subunit-related protein
           [Arabidopsis thaliana] gi|21537277|gb|AAM61618.1|
           unknown [Arabidopsis thaliana]
           gi|92856638|gb|ABE77412.1| At1g18340 [Arabidopsis
           thaliana] gi|332191584|gb|AEE29705.1| basal
           transcription factor complex subunit-related protein
           [Arabidopsis thaliana]
          Length = 301

 Score =  100 bits (248), Expect = 5e-19
 Identities = 62/148 (41%), Positives = 72/148 (48%), Gaps = 10/148 (6%)
 Frame = -2

Query: 416 NPFFWSGGAAVHHPAAVLPFSKLLSHVIPFXXXXXXXXXXXXXXLIAAGVHTCGYIYDXX 237
           NP FWS           + FS+ LSHV+ F              +IA G  +C YIYD  
Sbjct: 23  NPLFWS--------TTSITFSQFLSHVLAFLNAVLGLNQLNQVVVIATGYSSCDYIYDSS 74

Query: 236 XXXXAE--------VPAVRAEILRKLEEFVARDRRLG--EGDERTXXXXXXXXXXXXXLC 87
                         +PA+   +L+KLEEFV +D  L   E  E               LC
Sbjct: 75  LTSNHGNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVSEDRIPSCLLSGSLSMALC 134

Query: 86  YIQRVFRSGALHPQPRILCLQGSPDGPE 3
           YIQRVFRSG LHPQPRILCLQGSPDGPE
Sbjct: 135 YIQRVFRSGHLHPQPRILCLQGSPDGPE 162


>ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arabidopsis lyrata subsp.
           lyrata] gi|297338839|gb|EFH69256.1| hypothetical protein
           ARALYDRAFT_472054 [Arabidopsis lyrata subsp. lyrata]
          Length = 301

 Score = 98.2 bits (243), Expect = 2e-18
 Identities = 61/148 (41%), Positives = 72/148 (48%), Gaps = 10/148 (6%)
 Frame = -2

Query: 416 NPFFWSGGAAVHHPAAVLPFSKLLSHVIPFXXXXXXXXXXXXXXLIAAGVHTCGYIYDXX 237
           NP FWS           + FS+ LSHV+ F              +IA G  +C YIYD  
Sbjct: 23  NPLFWS--------TTSITFSQFLSHVLAFLNAVLGLNQLNQVVVIATGYSSCDYIYDSS 74

Query: 236 XXXXAE--------VPAVRAEILRKLEEFVARDRRLG--EGDERTXXXXXXXXXXXXXLC 87
                         +PA+   +L+KLE+FV +D  L   E  E               LC
Sbjct: 75  LTSNHGNLESNGTGMPALFGSLLKKLEDFVTKDEELSREEVSEDRIPSCLLSGSLSMALC 134

Query: 86  YIQRVFRSGALHPQPRILCLQGSPDGPE 3
           YIQRVFRSG LHPQPRILCLQGSPDGPE
Sbjct: 135 YIQRVFRSGHLHPQPRILCLQGSPDGPE 162


>dbj|BAK06937.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 292

 Score = 97.8 bits (242), Expect = 2e-18
 Identities = 60/160 (37%), Positives = 76/160 (47%), Gaps = 6/160 (3%)
 Frame = -2

Query: 464 KLYXXXXXXXXXXXXVNPFFWSGGAAVHHPAAVLPFSKLLSHVIPFXXXXXXXXXXXXXX 285
           KLY             NPFFW+G A        LPF+  LSH+I F              
Sbjct: 7   KLYSDDVSLVVVVVDTNPFFWAGAA--------LPFADFLSHLIHFVNSLLLLSNLNHVV 58

Query: 284 LIAAGVHTCGYIYDXXXXXXA---EVPAVRAEILRKLEEFVARDRRLGEGDERTXXXXXX 114
           +IAAGV +C Y++D      +   +V     +  RKLEE + +D R   G+         
Sbjct: 59  IIAAGVSSCAYVFDSGNAGASGTADVAETLGKASRKLEELIKQDARETVGNGTVADGGAA 118

Query: 113 XXXXXXXL---CYIQRVFRSGALHPQPRILCLQGSPDGPE 3
                      CYIQR+FRSG+ HPQPRILC+QGSPDGPE
Sbjct: 119 SLFSGALSLALCYIQRIFRSGSRHPQPRILCVQGSPDGPE 158


>ref|NP_001131186.1| hypothetical protein [Zea mays] gi|194688300|gb|ACF78234.1| unknown
           [Zea mays] gi|194690816|gb|ACF79492.1| unknown [Zea
           mays] gi|224028537|gb|ACN33344.1| unknown [Zea mays]
           gi|413926714|gb|AFW66646.1| hypothetical protein
           ZEAMMB73_940692 [Zea mays]
          Length = 291

 Score = 96.7 bits (239), Expect = 5e-18
 Identities = 63/160 (39%), Positives = 76/160 (47%), Gaps = 6/160 (3%)
 Frame = -2

Query: 464 KLYXXXXXXXXXXXXVNPFFWSGGAAVHHPAAVLPFSKLLSHVIPFXXXXXXXXXXXXXX 285
           KLY             NPFFW+        AA LPF+   +H+I F              
Sbjct: 7   KLYSDDVSLVVVVVDTNPFFWA--------AAALPFADFFAHLIHFVNSLLLLNHLNRVV 58

Query: 284 LIAAGVHTCGYIYDXXXXXXAEVPAVRA---EILRKLEEFVARDRRLGEGD---ERTXXX 123
           +IAAGV +C YI D      +   AV     +  RK EEF+A+D R   G+         
Sbjct: 59  VIAAGVSSCAYILDSSDASPSGGVAVSDTFDKASRKAEEFIAQDARATAGNGSVASANAA 118

Query: 122 XXXXXXXXXXLCYIQRVFRSGALHPQPRILCLQGSPDGPE 3
                     LCYIQR+FRSG+ HPQPRILCLQGSPDGPE
Sbjct: 119 SLLSGALSISLCYIQRIFRSGSRHPQPRILCLQGSPDGPE 158


>ref|XP_004952041.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
           X1 [Setaria italica]
          Length = 291

 Score = 95.9 bits (237), Expect = 9e-18
 Identities = 61/160 (38%), Positives = 76/160 (47%), Gaps = 6/160 (3%)
 Frame = -2

Query: 464 KLYXXXXXXXXXXXXVNPFFWSGGAAVHHPAAVLPFSKLLSHVIPFXXXXXXXXXXXXXX 285
           KLY             NPFFW+        AA LPF+   ++++ F              
Sbjct: 7   KLYSDDVSLVVIVVDTNPFFWA--------AAALPFADFFANLVHFVNSLLLLNHLNRVV 58

Query: 284 LIAAGVHTCGYIYDXXXXXXAEVPAVRA---EILRKLEEFVARDRRLGEGDERTXXXXXX 114
           +IAAGV +C YI+D      A    V A   +  RK+EEF+A+D R   G+         
Sbjct: 59  VIAAGVSSCSYIFDSSDASAAGGVGVTATFDKASRKVEEFIAQDARATAGNGSVVSGNAA 118

Query: 113 XXXXXXXL---CYIQRVFRSGALHPQPRILCLQGSPDGPE 3
                      CYIQR+FRSG  HPQPRILCLQGSPDGPE
Sbjct: 119 SLLSGALSLALCYIQRIFRSGTRHPQPRILCLQGSPDGPE 158