BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Stemona21_contig00018141
         (3613 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006486503.1| PREDICTED: uncharacterized protein LOC102607...   774   0.0  
ref|XP_006488688.1| PREDICTED: uncharacterized protein LOC102623...   762   0.0  
gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]               752   0.0  
gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]             683   0.0  
ref|XP_006478539.1| PREDICTED: uncharacterized protein LOC102614...   680   0.0  
ref|XP_006464891.1| PREDICTED: uncharacterized protein LOC102626...   673   0.0  
gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subc...   641   0.0  
dbj|BAK61840.1| gag-pol polyprotein [Citrus unshiu]                   630   e-177
gb|ABA95343.1| retrotransposon protein, putative, Ty3-gypsy subc...   591   e-166
emb|CAE04995.2| OSJNBb0093G06.3 [Oryza sativa Japonica Group]         582   e-163
gb|AAN65036.1| putative RIRE2 retrotransposon protein [Oryza sat...   581   e-163
gb|ABF99143.1| retrotransposon protein, putative, Ty3-gypsy subc...   581   e-163
gb|AAV25234.1| putative polyprotein [Oryza sativa Japonica Group]     581   e-163
emb|CAE03068.2| OSJNBa0089E12.6 [Oryza sativa Japonica Group]         579   e-162
gb|AAS90646.1| putative polyprotein [Oryza sativa Japonica Group]     578   e-162
gb|AAM92798.1| putative gag-pol precursor [Oryza sativa Japonica...   576   e-161
emb|CAH66795.1| H0215F08.6 [Oryza sativa Indica Group]                576   e-161
emb|CAH66866.1| H0307D04.11 [Oryza sativa Indica Group]               575   e-161
gb|AAL58229.1|AC084762_3 putative gag-pol precursor [Oryza sativ...   574   e-160
gb|ABA93599.1| retrotransposon protein, putative, Ty3-gypsy subc...   573   e-160

>ref|XP_006486503.1| PREDICTED: uncharacterized protein LOC102607673 [Citrus sinensis]
          Length = 1866

 Score =  774 bits (1998), Expect = 0.0
 Identities = 449/1196 (37%), Positives = 659/1196 (55%), Gaps = 82/1196 (6%)
 Frame = +3

Query: 264  NSNGGTSGSAENNRHIGNTIGAIREEITANQPEELGDLQYAPEESTDQEQLWEKHFSEIQ 443
            N  G +    E  + + N     R++I A  P+   +L              E     + 
Sbjct: 94   NGRGASVDEGELRQRLQNAEQE-RDQIAARDPDRAVEL--------------EGEVRRLA 138

Query: 444  EKVTSLQSSKLSHSVEALITQSEPPFTKEILEAPLPPKFKVPQIEAYDGTKDPKDHVDNF 623
            + +  +Q  +   S   ++ + E P + EI+   +P  F+ P ++ Y G  DP  H++ F
Sbjct: 139  QVIEEMQGKRKPPSWRIMLDE-ESPLSTEIMSTIIPKDFRFPDLK-YSGRSDPLVHIERF 196

Query: 624  RTLMVLQGVADLIMCRAFPTTLKGIAKAWYNKLKPGSIASFAELSTGFVSHFIGNRRRRK 803
              +  +QG+     CR  P TL+G A+ WY KL  G I  + ++       F G      
Sbjct: 197  NDMTGVQGLTPAQRCRVLPLTLEGRAREWYRKLPRGGIKGYEQICQELAEQFRGAVAPED 256

Query: 804  PINSLFAIKQNPEEKLKSFIARFRTVVLDIDDMNDKVAISAFTTGLYKSDCLKDLAMRPP 983
             +  L  ++Q   E L+ FI R+  VVLD+   N   A+     G+       +L     
Sbjct: 257  DMMELMGMRQEEHESLRDFIKRYHRVVLDLGAFNHPQALKGLKEGVRIGRLWYNLRSPLV 316

Query: 984  ETY------AELLLRVDEH----VTAQEIMDSARIEEKPQN-----KRPREEERSHQTSG 1118
            + Y      A+  + ++E     + ++++ +  R E +  N     KR  E      TS 
Sbjct: 317  QNYSAGYEQAKRDIEIEEEKSAKIKSEQLEELRRKERRTPNGSRSGKRAGEPSERGGTSA 376

Query: 1119 KARPRNEAT---------------------REIRR---------PREDY--KPREEYNNY 1202
            ++RP   AT                     RE R+         PR  +   PR    + 
Sbjct: 377  RSRPYPIATRSQQFQHNRAQPPRLPFPDRQREFRQIAADPYHNTPRASHATNPRARRPDQ 436

Query: 1203 TPLNTSRETVY-NRVYQL---------------------------GILSRP-PQMNPKFQ 1295
                 +R+ V+ +R  QL                           G+L  P P   P  +
Sbjct: 437  LATMPARDDVHDSRAVQLVDQSLTYRQHTPLKISMEELYERIEGRGLLYPPAPITKPTHR 496

Query: 1296 RNTNKYCRYHRDNGHTTDECIHLKNDIERLIRRGRLQEFIRNNQQENKNN-DRTSNDQSN 1472
            R+ +++C++H  +GHT ++C  LK  +E L+R   L E++       ++   R    + +
Sbjct: 497  RDKSRFCKFHDTHGHTINQCRDLKTQVEDLVRNRYLDEYVDGISPATESQYTRDEGVERS 556

Query: 1473 PPKILGEVPVILRGTTISGESSSSRKNHARRA--RDEIIH---AAGRVNVTHQSAQNISF 1637
              +    V VI  G T++G+S+ +RKN+ R A    E++    AA R  V       I +
Sbjct: 557  LEREQSTVRVIAGGPTLAGDSNRARKNYGRYALTSKEVLFNLPAAKRAKVRQVP---IMW 613

Query: 1638 TEEEAARLQHPHDDALVVSVNISNYLVHRVLIDTGSSVDIIFINALEKLEIQSSQLQPVT 1817
            TE +   + +PH+DALV+   +++  + R+L+DTGSSVDI+F +AL+ + I   +L+   
Sbjct: 614  TENDEEGILYPHEDALVIKALVASTELRRILVDTGSSVDILFKSALDDMGISDLKLERTN 673

Query: 1818 SPLVGFSREQATPVGKITLPSTFGSSPNLKTVMTEYLVMGCSSPYNAILGRPTLNRLHAV 1997
            + L GF   + TP+G I LP T G+ P  +T+M +++V+   SPY  ILGRP +     V
Sbjct: 674  TSLKGFGGGRLTPMGVIELPITVGTKPFERTMMLDFVVVEERSPYQMILGRPFMRISQCV 733

Query: 1998 TSTYHLIVKFPTDNGVGKVLGSQKIARECNVAGLSKKARPTTILQIDEDARDKLNNSEPA 2177
             ST++L +K+  +  VG V G Q++AR C      +  + T+   +D     K    EP 
Sbjct: 734  ISTHYLALKYRINGVVGVVKGDQRMARSCYATAAKETLQVTS---LDNRGDSKNGRQEPV 790

Query: 2178 EETKLILLDPADPNKKTRIGARLTAEDKIKLTTFLQQESDVMAFSHQDMPGIDPNVITHQ 2357
            E+ K +++  +DP+K  ++G+ L    K +L   LQ  +D+ A+SH+DMPGID  +  H+
Sbjct: 791  EKLKEVVVSRSDPSKVVKVGSELGEAIKGELVKCLQSHADIFAWSHEDMPGIDRGIACHK 850

Query: 2358 LSIQPGARPVKQKKRQMAMERSMAAKEEVEKLLKVGFIDKTMYPEWIANVVLVKKNNGKW 2537
            L+++ GARPV+QK+R    ER  A   EVEKLLK GFI +  YPEWI+NVVLVKK NGKW
Sbjct: 851  LAVKRGARPVRQKRRCFNHERYEAINAEVEKLLKAGFIREAKYPEWISNVVLVKKANGKW 910

Query: 2538 RMCVDYIDLNKACPKDNYPLPSIDRLVDSTAGHKILSLMDAFSGYNQIMMHPSDMEKTTF 2717
            RMCVD+ DLNKACPKD++PLP ID+LVDSTAGH +LS MDAFSGYNQI M+  D E TTF
Sbjct: 911  RMCVDFTDLNKACPKDSFPLPKIDQLVDSTAGHSLLSFMDAFSGYNQIPMNEQDEESTTF 970

Query: 2718 ITNEGLFYYRRMPFGLKNAGATFQRLVDKMFSNLIGKTMEAYVDDLLVKSSEVDQHIKDL 2897
            ITN GLF YR MPFGLKNAGAT+QRLV+K+F  LIG+TME YVDD++ KS E   H+K L
Sbjct: 971  ITNMGLFCYRVMPFGLKNAGATYQRLVNKVFKPLIGRTMEVYVDDMITKSREPRDHVKHL 1030

Query: 2898 QEAFSIMRQYGMKLNPEKCVFGVSSGKFLGFMVSERGIEANPDKIKALINLKTPQSIKDI 3077
            +E F ++R+Y MKLNPEKC FGVSSGKFLG++VS RGIEAN +KI+A+I +++P+++K++
Sbjct: 1031 EETFELLRRYKMKLNPEKCAFGVSSGKFLGYLVSHRGIEANLEKIRAVIEMRSPRTVKEV 1090

Query: 3078 QSLNGRIAALGRFISKSTDRMQPFLKALKDGKKFGWNEECAKGFEKLKEYLSKAPLLGKP 3257
            QSL G++AAL RFIS++TD+  PF + +K GKK  W  EC + F +LKEYL++APLL  P
Sbjct: 1091 QSLTGKLAALNRFISRATDKCHPFFQIIKKGKKMEWTPECEEAFGQLKEYLARAPLLSTP 1150

Query: 3258 NANERXXXXXXXXXXXXXXXXTRENKQQHQPVYYISRALQGAEIRYTEIEKXXXXXXXXX 3437
               ++                 RE + +  PVYY S+AL  AE RY  +EK         
Sbjct: 1151 REGDQLLLYLAISKRATSSVLVREEEGKQHPVYYTSKALVDAETRYPPMEKWALALITAA 1210

Query: 3438 XXXQPYFQAHPITVLTDRPLAAILQKPESSGRLVKWAIELGEFDIDFRPRKSMSAQ 3605
               +PYFQAH I V+TD+PL  +LQKP++SGRLVKW++EL EFD+ +RPR +  AQ
Sbjct: 1211 RKLRPYFQAHQIVVMTDQPLRQVLQKPDASGRLVKWSVELSEFDLSYRPRGATKAQ 1266


>ref|XP_006488688.1| PREDICTED: uncharacterized protein LOC102623105 [Citrus sinensis]
          Length = 1407

 Score =  762 bits (1967), Expect = 0.0
 Identities = 431/1110 (38%), Positives = 603/1110 (54%), Gaps = 73/1110 (6%)
 Frame = +3

Query: 495  LITQSEPPFTKEILEAPLPPKFKVPQIEAYDGTKDPKDHVDNFRTLMVLQGVADLIMCRA 674
            ++   E P   EI+ A +P  F++P +  Y G  DP  H++ F  +  +QG++    CR 
Sbjct: 206  IMLDGESPLAAEIMRAVIPRDFRLPDLR-YSGRTDPLMHIERFNDITGVQGLSPSQRCRV 264

Query: 675  FPTTLKGIAKAWYNKLKPGSIASFAELSTGFVSHFIGNRRRRKPINSLFAIKQNPEEKLK 854
            FP +L+G A+ WY KL  GSI +F ++   F   F G       +  L ++KQ  +E L+
Sbjct: 265  FPLSLEGRAREWYRKLPRGSIKTFEQMCQEFAEQFSGAMSPEDDMMELKSMKQGEQETLR 324

Query: 855  SFIARFRTVVLDIDDMNDKVAISAFTTGLYKSDCLKDLAMRPPETYAELL------LRVD 1016
             FI RF   VLD+   N   A+     G+       +L     +TYA         + ++
Sbjct: 325  EFIKRFHRAVLDLGAFNHPQALRGLKEGVKIGRLWYNLRSPAIQTYAAAYEQAKRDIEIE 384

Query: 1017 EHVTAQEIMDSARIEEKPQNK---------------------------RPREEERSHQTS 1115
            E   A+   D     E+ + K                           +P +    +Q S
Sbjct: 385  EEKAARIKTDQLEGLERKEKKALPGNGPIRRRDHQVSGSGAGGRVIAYQPHQRPPQYQRS 444

Query: 1116 GKARPRNEATREIRR--------------------------PREDYKPRE---------- 1187
            G   PR+ A    RR                          P      RE          
Sbjct: 445  GAPPPRSPAREPWRRHDSASGGLHQHSHGSRTSRPEALPPPPTHSGANRERAVHLVDQNQ 504

Query: 1188 EYNNYTPLNTSRETVYNRVYQLGILSRP-PQMNPKFQRNTNKYCRYHRDNGHTTDECIHL 1364
            +Y  YTPL    + VY  +   G+L  P P      +R+  +YC++H  +GHTT EC  L
Sbjct: 505  DYGRYTPLKVPLDEVYEAIKDRGLLHLPTPITKLPNRRDRGRYCKFHGTHGHTTVECRDL 564

Query: 1365 KNDIERLIRRGRLQEFIRNNQQENKNNDRTSNDQSNPPKILGEVPVILRGTTISGESSSS 1544
            K  +E L+R   L EF+          D          +    V VI  G T++G+S+ S
Sbjct: 565  KTQVEDLVRNRYLDEFMDGTFPMVATTDEGEQSDRIFRREQPAVRVIAGGPTLAGDSNRS 624

Query: 1545 RKNHARRARD--EIIHAAGRVNVTHQSAQNISFTEEEAARLQHPHDDALVVSVNISNYLV 1718
            RKN+AR A    EI+               I +T+E+   + +PH+DALV+   +++   
Sbjct: 625  RKNYARYAMTSKEILFNTPAAKRARVRQVPIMWTDEDEEGILYPHEDALVIEATVASKKF 684

Query: 1719 HRVLIDTGSSVDIIFINALEKLEIQSSQLQPVTSPLVGFSREQATPVGKITLPSTFGSSP 1898
             R+L+DT SSVD++F + LE++ I   +L+   + L GF   +  P+G + LP T GS P
Sbjct: 685  DRILVDTWSSVDVLFKSTLEEMGIADRKLEYTNTSLKGFGGGKLVPLGVVKLPITVGSPP 744

Query: 1899 NLKTVMTEYLVMGCSSPYNAILGRPTLNRLHAVTSTYHLIVKFPTDNGVGKVLGSQKIAR 2078
              +T++ +++V+    PY  ILGRP L    AV S ++L +K+  +  VG V G Q+IAR
Sbjct: 745  TERTMILDFVVVDEEGPYQMILGRPFLRMSKAVLSNHYLALKYRVNGVVGVVRGDQRIAR 804

Query: 2079 ECNVAGLSKKARPTT-ILQIDEDARDKLNNSEPAEETKLILLDPADPNKKTRIGARLTAE 2255
             C     S  AR    I  +D    +K    EP E+ +                      
Sbjct: 805  SC----YSSAAREAMQITSLDTRVENKTGRQEPVEDLETA-------------------- 840

Query: 2256 DKIKLTTFLQQESDVMAFSHQDMPGIDPNVITHQLSIQPGARPVKQKKRQMAMERSMAAK 2435
                        +DV A++H+DMPGIDP V  H+L+++ GAR V+QK+R    ER  A  
Sbjct: 841  -----------HADVFAWTHEDMPGIDPEVACHKLAMKKGARAVRQKRRCFNQERYEAVN 889

Query: 2436 EEVEKLLKVGFIDKTMYPEWIANVVLVKKNNGKWRMCVDYIDLNKACPKDNYPLPSIDRL 2615
            +EVEKLL+ GFI +  YPEWI+NVVLVKK NGKWRMCVD+ DLNKACPKD++PLP ID+L
Sbjct: 890  DEVEKLLRAGFIREVNYPEWISNVVLVKKANGKWRMCVDFTDLNKACPKDSFPLPKIDQL 949

Query: 2616 VDSTAGHKILSLMDAFSGYNQIMMHPSDMEKTTFITNEGLFYYRRMPFGLKNAGATFQRL 2795
            VDSTAGH +LS MDAFSGYNQI M+  D E T FITN+GLF YR MPFGLKNAGAT+QRL
Sbjct: 950  VDSTAGHGLLSFMDAFSGYNQIPMYEPDEESTAFITNQGLFCYRVMPFGLKNAGATYQRL 1009

Query: 2796 VDKMFSNLIGKTMEAYVDDLLVKSSEVDQHIKDLQEAFSIMRQYGMKLNPEKCVFGVSSG 2975
            V+K+F  LIGKTME YVDD++ KS    +H++ L+E F ++R+Y MKLNPEKC FGV SG
Sbjct: 1010 VNKVFKPLIGKTMEVYVDDMITKSKVPKEHVRHLEETFELLRKYKMKLNPEKCAFGVESG 1069

Query: 2976 KFLGFMVSERGIEANPDKIKALINLKTPQSIKDIQSLNGRIAALGRFISKSTDRMQPFLK 3155
            KFLGFMVS RGIEANP+KI+A++ + +P+++K++QSL GR+AAL RFISK+TD+ QPF +
Sbjct: 1070 KFLGFMVSHRGIEANPEKIQAIVQMTSPRNLKEMQSLTGRLAALSRFISKATDKCQPFFQ 1129

Query: 3156 ALKDGKKFGWNEECAKGFEKLKEYLSKAPLLGKPNANERXXXXXXXXXXXXXXXXTRENK 3335
             ++ GKK  W   C + F  LK+YL +APLL  P   ++                 RE +
Sbjct: 1130 VMRRGKKTEWTPGCEEAFRNLKQYLQQAPLLSTPRDGDKLNLYLAVSDRAASSVLVREEE 1189

Query: 3336 QQHQPVYYISRALQGAEIRYTEIEKXXXXXXXXXXXXQPYFQAHPITVLTDRPLAAILQK 3515
                P+YY S+AL  AE RY  +EK            +PYFQA P++V+T++PL  IL K
Sbjct: 1190 GVQYPIYYTSKALLDAETRYPPLEKWALALVVAARKLRPYFQAFPVSVITNQPLRQILHK 1249

Query: 3516 PESSGRLVKWAIELGEFDIDFRPRKSMSAQ 3605
            P++SGRLVKWA+EL EFD+D++PR ++ AQ
Sbjct: 1250 PDASGRLVKWAVELSEFDMDYKPRAAIKAQ 1279


>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1859

 Score =  752 bits (1941), Expect = 0.0
 Identities = 423/1119 (37%), Positives = 623/1119 (55%), Gaps = 89/1119 (7%)
 Frame = +3

Query: 516  PFTKEILEAPLPPKFKVPQIEAYDGTKDPKDHVDNFRTLMVLQGVADLIMCRAFPTTLKG 695
            PFT +I+  PLP K++   I  YDG+ DP +H++ FRT M L      + C+ FPT+L+ 
Sbjct: 211  PFTDDIIATPLPDKWRGLTINLYDGSTDPDEHLNIFRTQMTLYTTDRTVWCKVFPTSLRE 270

Query: 696  IAKAWYNKLKPGSIASFAELSTGFVSHFIGNRRRRKPINSLFAIKQNPEEKLKSFIARFR 875
                W++ L P SIASF  L   F + +  +R  R    SL  +KQ   E L++F+ RF 
Sbjct: 271  GPLGWFSDLPPNSIASFDALELKFTTQYATSRPHRTSSMSLLNVKQERGESLRTFMNRFS 330

Query: 876  TVVLDIDDMNDKVAISAFTTGLYKSDCLKDLAMRPPETYAELLLRVDEHVTAQEIMDSAR 1055
             V ++I ++N ++A+    + +      + L  RPP    EL  R  + +         +
Sbjct: 331  KVCMNIRNLNPEIAMHHLVSAILPGRFTESLIKRPPCNMDELRTRATKFM---------Q 381

Query: 1056 IEEKPQNKRPREEERSHQTSGKARPRNEATREIRRPREDYKPREEYNNYTPLNTSRETVY 1235
            IEE     R    E +  + G   P     RE  RP     PR  ++NYTPL   R  V 
Sbjct: 382  IEEHIDYHRKTYAENTDNSKGIRPPTIPTDRERHRPNRG--PR--FHNYTPLIVPRGKVL 437

Query: 1236 NRVYQLGILS--RPPQMNPKFQRNTNKYCRYHRDNGHTTDECIHLKNDIERLIRRGRLQE 1409
            +   Q+ ++   RP Q  P    +T+K C+YHR+ GHTT+ C  LK+ IE L++ G L++
Sbjct: 438  DEALQIELIPTLRPSQTPPN--ADTSKRCQYHRNYGHTTEGCQALKDKIEELVQAGHLRK 495

Query: 1410 FIRNN--------------QQENKNNDRTSND---------------QSNP--------- 1475
            F++                ++  + +DRT ++               ++ P         
Sbjct: 496  FVKTTITAPRSPQRDHDPRERSGRRDDRTRDNHYRSSRRKRSESPIRRTRPKSESPERRS 555

Query: 1476 ---------------PKILGEVP----VILRGTTISGESSSSRKNHARRARDEIIHAAGR 1598
                           P  LG+ P     I  G    G S+S+RK H R  +   +H+   
Sbjct: 556  RTKQKVRTVINTIAGPVSLGQPPQEINYIAGGFAGGGCSNSARKKHLRAIQS--VHSTPT 613

Query: 1599 VNVTHQSAQNISFTEEEAARLQHPHDDALVVSVNISNYLVHRVLIDTGSSVDIIFINALE 1778
                H     I+FT+E+   +    DD +V++V I  + + +VL+D GSSVDI++    +
Sbjct: 614  QRRPH--IPPITFTDEDFTAIDPSQDDPMVITVEIDKFAIAKVLVDQGSSVDILYWETFK 671

Query: 1779 KLEIQSSQLQPVTSPLVGFSREQATPVGKITLPSTFGSSPNLKTVMTEYLVMGCSSPYNA 1958
            K++I  +++QP    +VGFSRE+    G I L +TFG     KT+   YL++  ++ YN 
Sbjct: 672  KMKIPEAEIQPYNEQIVGFSRERVDTKGFIDLYTTFGDDYLSKTINIRYLLVNANTSYNI 731

Query: 1959 ILGRPTLNRLHAVTSTYHLIVKFPTDNG-VGKVLGSQKIARECNVAGL------------ 2099
            +LGRP++NRL A+ ST HL +KFP+ NG +  V   QK AREC VA L            
Sbjct: 732  LLGRPSINRLKAIVSTPHLAMKFPSVNGDIATVHIDQKTARECYVASLKVEPTRRLYTTS 791

Query: 2100 -----------------SKKARPTTILQIDEDARDKLNNSEPAEETKLILLDPADPNKKT 2228
                              +++R   +  +D D R      E  E+ + I L   D ++KT
Sbjct: 792  AERTTERRGRSTERRSRGRESRRHLVALVDLDPRLDDPRMEAGEDLQPIFL--RDKDRKT 849

Query: 2229 RIGARLTAEDKIKLTTFLQQESDVMAFSHQDMPGIDPNVITHQLSIQPGARPVKQKKRQM 2408
             +G  L  +D+  +   L + +D+ A++  DMPG+  +VITH+LS+   ARP+ QKKR++
Sbjct: 850  YMGTSLKPDDRETIGKTLTKNADLFAWTAADMPGVKSDVITHRLSVYTEARPIAQKKRKL 909

Query: 2409 AMERSMAAKEEVEKLLKVGFIDKTMYPEWIANVVLVKKNNGKWRMCVDYIDLNKACPKDN 2588
              ER  AA+EE +KL++ GFI K  Y  W+ANVV+VKK NGKWRMCVDY DLNKACPKD+
Sbjct: 910  GEERRKAAREETDKLIQAGFIQKAHYTTWLANVVMVKKTNGKWRMCVDYTDLNKACPKDS 969

Query: 2589 YPLPSIDRLVDSTAGHKILSLMDAFSGYNQIMMHPSDMEKTTFITNEGLFYYRRMPFGLK 2768
            YPLP+IDRLVD  AGH+ILS +DA+SGYNQI M+  D EKT F T+   F+Y  MPFGLK
Sbjct: 970  YPLPTIDRLVDGAAGHQILSFLDAYSGYNQIQMYHRDREKTAFRTDSDNFFYEVMPFGLK 1029

Query: 2769 NAGATFQRLVDKMFSNLIGKTMEAYVDDLLVKSSEVDQHIKDLQEAFSIMRQYGMKLNPE 2948
            NAGAT+QRL+D +F ++IG+ +E YVDD++VKS   +QH+ DL+E F  +RQY M+LNPE
Sbjct: 1030 NAGATYQRLMDHVFHDMIGRNVEVYVDDIVVKSDSCEQHVSDLKEVFQALRQYRMRLNPE 1089

Query: 2949 KCVFGVSSGKFLGFMVSERGIEANPDKIKALINLKTPQSIKDIQSLNGRIAALGRFISKS 3128
            KC FGV  GKFLGFM++ RGIEANP+K KA+  +++P+ +K+IQ L  R+ +L RF+ K 
Sbjct: 1090 KCAFGVEGGKFLGFMLTHRGIEANPEKCKAITEMRSPKGLKEIQRLVSRLTSLSRFVPKL 1149

Query: 3129 TDRMQPFLKALKDGKKFGWNEECAKGFEKLKEYLSKAPLLGKPNANERXXXXXXXXXXXX 3308
             +R +P +K LK   KF W +EC + F++LK +L+  P++ KPNA E             
Sbjct: 1150 AERTRPIIKLLKKTSKFEWTDECEQNFQQLKAFLASPPVIQKPNAREPIVVYLAVSNEAV 1209

Query: 3309 XXXXTRENKQQHQPVYYISRALQGAEIRYTEIEKXXXXXXXXXXXXQPYFQAHPITVLTD 3488
                 +E K + +PVY++SR L  AE RY  +EK            + YFQ H + V T+
Sbjct: 1210 SSALVQEIKAEERPVYFVSRVLHDAETRYQMVEKVAFALVITARRMRMYFQNHKVIVRTN 1269

Query: 3489 RPLAAILQKPESSGRLVKWAIELGEFDIDFRPRKSMSAQ 3605
             P+  IL KP+ +GR++ WA+EL EF I+++PR ++ +Q
Sbjct: 1270 YPIMKILTKPDLAGRMIGWAVELSEFHIEYQPRGAIKSQ 1308


>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  683 bits (1763), Expect = 0.0
 Identities = 397/1081 (36%), Positives = 595/1081 (55%), Gaps = 47/1081 (4%)
 Frame = +3

Query: 510  EPPFTKEILEAPLPPKFKVPQIEAYDGTKDPKDHVDNFRTLMVLQGVA----DLIMCRAF 677
            + PFT+ I    +    K+ ++E+Y+G  DPK+ + +F   +    +     D   C+ F
Sbjct: 201  QTPFTRRITNVSIRGAQKI-KLESYNGRNDPKEFLTSFNVAINRAELTIDNFDAGRCQIF 259

Query: 678  PTTLKGIAKAWYNKLKPGSIASFAELSTGFVSHFIGNRRRRKPINSLFAIKQNPEEKLKS 857
               L G A  W+++LKP SI SF +L++ F+ H+      +     L++I Q  +E L+S
Sbjct: 260  IEHLTGPAHNWFSRLKPNSIDSFHQLTSSFLKHYAPLIENQTSNADLWSISQGAKESLRS 319

Query: 858  FIARFRTVVLDIDDMNDKVAISAFTTGL-YKSDCLKDLAMRPPETYAELLLRVDEHVTAQ 1034
            F+ RF+ VV +I  + D+ AI A    + Y S    D+ +  P T  + L R    +  +
Sbjct: 320  FVDRFKLVVTNIT-VPDEAAIVALRNAVWYDSRFRDDITLHAPSTLEDALHRASRFIELE 378

Query: 1035 EIMDSARIEEKPQNKRPREEERSHQTSGKARPRNEATREI-RRPREDYKPREEYNNYTPL 1211
            E  +   +  K  + +    + +          NE  + + R P    KP       T  
Sbjct: 379  E--EKLILARKHNSTKTPACKDAVVIKVGPDDSNEPRQHLDRNPSAGRKP-------TSF 429

Query: 1212 NTSRETVYNRVYQLGILSRP-PQMNPKFQRNTNKYCRYHRDNGHTTDECIHLKNDIERLI 1388
              S ET   + +   I     P   P        YC YH+   H+T+ C  L+  +    
Sbjct: 430  LVSTETPDAKPWNKYIRDADSPAAGPM-------YCEYHKSRAHSTENCRFLQGLLMAKY 482

Query: 1389 RRGRLQEFIRNNQQENKNNDRTS-------NDQSNPPK---------------------- 1481
            + G +          NKN  R         NDQ+ PP                       
Sbjct: 483  KSGGITIECDRPPINNKNQRRNETTARQYLNDQTKPPTPAEQGIITSADDPAAKRQRNGK 542

Query: 1482 -------ILGEVPVILRGTTISGESSSSRKNHARRARDEIIHAAGRVNVTHQSAQN--IS 1634
                   ++ +V VI+ G     +S  S K + ++A + ++      + T    Q+  IS
Sbjct: 543  AIAAEPVVVRQVHVIMGGLQNCSDSVRSIKQYRKKA-EMVVAWPSSTSTTRNPNQSAPIS 601

Query: 1635 FTEEEAARLQHPHDDALVVSVNISNYLVHRVLIDTGSSVDIIFINALEKLEIQSSQLQPV 1814
            FT+ +   L  PH+D LVV + IS+  V RVLIDTGSSVD+IF + L  + I   Q++PV
Sbjct: 602  FTDVDLEGLDTPHNDPLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITDRQIKPV 661

Query: 1815 TSPLVGFSREQATPVGKITLPSTFGSSPNLKTVMTEYLVMGCSSPYNAILGRPTLNRLHA 1994
            + PL GF  +    +G I LP   G          +++V+G  + YN ILG P ++++ A
Sbjct: 662  SKPLAGFDGDFVMTIGTIKLPIFVGG----LIAWVKFVVIGKPAVYNVILGTPWIHQMQA 717

Query: 1995 VTSTYHLIVKFPTDNGVGKVLGSQKIARECNVAGLSKKARPTTILQIDEDARDKLNNSEP 2174
            + STYH  VKFPT NG+                           L+  ++A+    + E 
Sbjct: 718  IPSTYHQCVKFPTHNGI-------------------------FTLRAPKEAKTPSRSYEE 752

Query: 2175 AE--ETKLILLDPADPNKKTRIGARLTAEDKIKLTTFLQQESDVMAFSHQDMPGIDPNVI 2348
            +E   T+++ +D +DP +   +GA ++   +++L   L++ S   A+S +DM GIDP + 
Sbjct: 753  SELCRTEMVNIDESDPTRCVGVGAEISPSIRLELIALLKRNSKTFAWSIEDMKGIDPAIT 812

Query: 2349 THQLSIQPGARPVKQKKRQMAMERSMAAKEEVEKLLKVGFIDKTMYPEWIANVVLVKKNN 2528
             H+L++ P  +PVKQK+R++  ER+ A  EEVEKLLK G I +  YPEW+AN V+VKK N
Sbjct: 813  AHELNVDPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKN 872

Query: 2529 GKWRMCVDYIDLNKACPKDNYPLPSIDRLVDSTAGHKILSLMDAFSGYNQIMMHPSDMEK 2708
            GKWR+CVDY DLNKACPKD+YPLP IDRLV++T+G+ +LS MDAFSGYNQI+MH  D EK
Sbjct: 873  GKWRVCVDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEK 932

Query: 2709 TTFITNEGLFYYRRMPFGLKNAGATFQRLVDKMFSNLIGKTMEAYVDDLLVKSSEVDQHI 2888
            T+F+T+ G + Y+ M FGLKNAGAT+QR V+KM ++ IG+T+E Y+DD+LVKS + + H+
Sbjct: 933  TSFVTDRGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHV 992

Query: 2889 KDLQEAFSIMRQYGMKLNPEKCVFGVSSGKFLGFMVSERGIEANPDKIKALINLKTPQSI 3068
            + L + F ++  YGMKLNP KC FGV+SG+FLG++V++RGIEANP +I+A++ L +P++ 
Sbjct: 993  EHLSKCFDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNA 1052

Query: 3069 KDIQSLNGRIAALGRFISKSTDRMQPFLKALKDGKKFGWNEECAKGFEKLKEYLSKAPLL 3248
            +++Q L GRIAAL RFIS+STD+  PF   LK   +F W+++  + FEKLK+YLS  P+L
Sbjct: 1053 REVQRLTGRIAALNRFISRSTDKCLPFYNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPIL 1112

Query: 3249 GKPNANERXXXXXXXXXXXXXXXXTRENKQQHQPVYYISRALQGAEIRYTEIEKXXXXXX 3428
             KP   E                  RE++ + +P++Y S++L  AE RY  IEK      
Sbjct: 1113 VKPEVGETLYLYIAVSDHAVSSVLVREDRGEQRPIFYTSKSLVEAETRYPVIEKAALAVV 1172

Query: 3429 XXXXXXQPYFQAHPITVLTDRPLAAILQKPESSGRLVKWAIELGEFDIDFRPRKSMSAQL 3608
                  +PYFQ+H I VLTD+PL   L  P  SGR+ KWA+EL E+DIDFRPR +M +Q+
Sbjct: 1173 TSARKLRPYFQSHTIAVLTDQPLRVALHSPSQSGRMTKWAVELSEYDIDFRPRPAMKSQV 1232

Query: 3609 V 3611
            +
Sbjct: 1233 L 1233


>ref|XP_006478539.1| PREDICTED: uncharacterized protein LOC102614166 [Citrus sinensis]
          Length = 1089

 Score =  680 bits (1754), Expect = 0.0
 Identities = 382/991 (38%), Positives = 558/991 (56%), Gaps = 82/991 (8%)
 Frame = +3

Query: 546  LPPKFKVPQIEAYDGTKDPKDHVDNFRTLMVLQGVADLIMCRAFPTTLKGIAKAWYNKLK 725
            +P  F+ P ++ Y G  DP  H++ F  +  +QG+     CR F  TL+G A+ WY KL 
Sbjct: 5    IPRDFRFPDLK-YSGRSDPLVHIERFNDMTGVQGLTPAQRCRVFLLTLEGRAREWYRKLP 63

Query: 726  PGSIASFAELSTGFVSHFIGNRRRRKPINSLFAIKQNPEEKLKSFIARFRTVVLDIDDMN 905
             G I  + ++       F G       +  L  +KQ   E L+ F+ R+   VLD+   N
Sbjct: 64   RGGIKGYEQMCLELAEQFRGAVAPEDDMMELMGMKQEEHESLRDFVKRYHRAVLDLGTFN 123

Query: 906  DKVAISAFTTGLYKSDCLKDLAMRPPETY------AELLLRVDEHVTAQ----------- 1034
               A+     G+       +L     + Y      A   + ++E  +A+           
Sbjct: 124  HPQALRGLKEGVRIGRLWYNLRSPLVQNYSSGYEQARRDIEIEEEKSARIKSEQLEELRR 183

Query: 1035 ------------------EIMDSARIEEKPQNKRPREEERSHQTSGKARPR-NEATREIR 1157
                               +M       +P    PR ++  H  +   RP   E  REIR
Sbjct: 184  KERRAPKGCGSGKRTGESSVMGGISARSRPYPIAPRAQQFQHSRAQPPRPPIPERQREIR 243

Query: 1158 R---------PR-------EDYKPRE-----------------------EYNNYTPLNTS 1220
            +         PR          +P +                        Y  YTPL  S
Sbjct: 244  QMAAHPYHSAPRGLGATNYRSGRPEQIPAIPARCDIHDSRAVQLVDQSLAYKQYTPLKIS 303

Query: 1221 RETVYNRVYQLGILSRP-PQMNPKFQRNTNKYCRYHRDNGHTTDECIHLKNDIERLIRRG 1397
             E +Y R+   G+L  P P   P  +R+ +++C++H  +GHT  +C  LK  +E L+R  
Sbjct: 304  MEELYERIEGRGLLYPPAPITKPTHRRDKSRFCKFHDTHGHTISQCRDLKIQVEDLVRNR 363

Query: 1398 RLQEFIRNNQQENKNN-DRTSNDQSNPPKILGEVPVILRGTTISGESSSSRKNHARRA-- 1568
             L E++       ++   R    + +  +    + VI  G T++G+S+ +RKN+ R A  
Sbjct: 364  YLDEYVDGVSPVMESQYTRDEGVERDLEREQPTIRVIAGGPTLAGDSNRARKNYGRYAMT 423

Query: 1569 -RDEIIH--AAGRVNVTHQSAQNISFTEEEAARLQHPHDDALVVSVNISNYLVHRVLIDT 1739
             R+ +++  AA +  V       I +TE++   + +PH+DALV+   +++  + R+L+DT
Sbjct: 424  GREVLLNLPAAKKARVRQVP---IMWTEDDEEGILYPHEDALVIKALVASTELRRILVDT 480

Query: 1740 GSSVDIIFINALEKLEIQSSQLQPVTSPLVGFSREQATPVGKITLPSTFGSSPNLKTVMT 1919
            GSSVDI+F +AL+ + I   +L+   + L GF   + TP+G I LP T G+ P  +T+M 
Sbjct: 481  GSSVDILFKSALDDMGISDLKLERTNTSLKGFGGGRLTPMGVIELPITVGTKPFERTMML 540

Query: 1920 EYLVMGCSSPYNAILGRPTLNRLHAVTSTYHLIVKFPTDNGVGKVLGSQKIARECNVAGL 2099
            +++V+   SPY  ILGRP +     V ST++L +K+  +  VG V G Q++AR C     
Sbjct: 541  DFVVVEERSPYQMILGRPFMRISQCVMSTHYLALKYRINGVVGVVKGDQRMARSCYATAA 600

Query: 2100 SKKARPTTILQIDEDARDKLNNSEPAEETKLILLDPADPNKKTRIGARLTAEDKIKLTTF 2279
             +  + T++   D     K    EP E+ + +++  +DP++  ++G+ L    K +L   
Sbjct: 601  KETLQVTSL---DNRGDSKNGRQEPVEKLEEVVISRSDPSRVVKVGSELGEAIKAELVKC 657

Query: 2280 LQQESDVMAFSHQDMPGIDPNVITHQLSIQPGARPVKQKKRQMAMERSMAAKEEVEKLLK 2459
            LQ  +DV A+SH+DMPGID  +  H+L+++ GARPV+QK+R    ER  A   EVEKLLK
Sbjct: 658  LQSHADVFAWSHEDMPGIDRGIACHKLAVKRGARPVRQKRRCFNHERYEAINAEVEKLLK 717

Query: 2460 VGFIDKTMYPEWIANVVLVKKNNGKWRMCVDYIDLNKACPKDNYPLPSIDRLVDSTAGHK 2639
             GFI +  YPEWI+NVVLVKK NGKWRMCVD+ DLNKACPKD++PLP ID+LVDSTAGH 
Sbjct: 718  AGFIREAKYPEWISNVVLVKKANGKWRMCVDFTDLNKACPKDSFPLPKIDQLVDSTAGHG 777

Query: 2640 ILSLMDAFSGYNQIMMHPSDMEKTTFITNEGLFYYRRMPFGLKNAGATFQRLVDKMFSNL 2819
            +LS MDAFSGYNQI M+  D E TTFITN GLF YR MPFGLKNAGAT+QRLV+K+F  L
Sbjct: 778  LLSFMDAFSGYNQIPMNEQDEENTTFITNMGLFCYRMMPFGLKNAGATYQRLVNKIFKPL 837

Query: 2820 IGKTMEAYVDDLLVKSSEVDQHIKDLQEAFSIMRQYGMKLNPEKCVFGVSSGKFLGFMVS 2999
            IG TME YVDD++ KS E   H+K L+E F ++R+Y MKLNPEKC FGV SGKFLG++VS
Sbjct: 838  IGHTMEVYVDDMITKSREPRDHVKHLEETFELLRKYEMKLNPEKCAFGVGSGKFLGYLVS 897

Query: 3000 ERGIEANPDKIKALINLKTPQSIKDIQSLNGRIAALGRFISKSTDRMQPFLKALKDGKKF 3179
             RGIEANP+KI+A+I +++P+++K++QSL G++AAL RFIS++TD+  PF + +K GKK 
Sbjct: 898  HRGIEANPEKIRAVIEMRSPRTVKEVQSLTGKLAALNRFISRATDKCHPFFQVIKKGKKM 957

Query: 3180 GWNEECAKGFEKLKEYLSKAPLLGKPNANER 3272
             W  EC   F +LKEYL++APLL  P   ++
Sbjct: 958  EWTPECEGAFGQLKEYLARAPLLSTPREGDQ 988


>ref|XP_006464891.1| PREDICTED: uncharacterized protein LOC102626228 [Citrus sinensis]
          Length = 1189

 Score =  673 bits (1737), Expect = 0.0
 Identities = 399/1042 (38%), Positives = 559/1042 (53%), Gaps = 75/1042 (7%)
 Frame = +3

Query: 657  LIMCRAFPTTLKGIAKAWYNKLKPGSIASFAELSTGFVSHFIGNRRRRKPINSLFAIKQN 836
            +++   FP +L+G A+ WY KL  GSI +F ++   F   F G       +  L ++KQ 
Sbjct: 150  IMLSERFPLSLEGRAREWYRKLPRGSIKTFEQMCQEFAEQFSGAMASEDDMMELKSMKQG 209

Query: 837  PEEKLKSFIARFRTVVLDIDDMNDKVAISAFTTGLYKSDCLKDLAMRPPETYAELLLRVD 1016
             +E L+ FI RF   VLD+   N   A+     G+       +L     +TYA    +  
Sbjct: 210  EQETLREFIKRFHRAVLDLGAFNHPQALRGLKEGVKIGRLWYNLRSPAIQTYATAYEQAK 269

Query: 1017 EHVTAQEIMDSARIEEKPQNKRPREEE-----------RSHQTSGKAR------------ 1127
              +  +E   +ARI+        R+E+           R HQ SG               
Sbjct: 270  RDIEIEE-EKAARIKTDQLEGLGRKEKKALPGNGPIRRRDHQASGSGAGGRVTAYQPHQR 328

Query: 1128 -----------PRNEATREIRR--------------------------PREDYKPRE--- 1187
                       PR+ A    RR                          P +    RE   
Sbjct: 329  PPQYQRSRAQPPRSPAREPWRRHELASGDLHQHPHGSRASRPEVLPPPPTQSGANRERAV 388

Query: 1188 -------EYNNYTPLNTSRETVYNRVYQLGILSRP-PQMNPKFQRNTNKYCRYHRDNGHT 1343
                   +Y  YT L  S + VY  +   G+L  P P      +R+  +YC++H  +GHT
Sbjct: 389  HLIDQNPDYGRYTSLKMSLDEVYEAIKDRGLLHLPTPITKLPNRRDRGRYCKFHGTHGHT 448

Query: 1344 TDECIHLKNDIERLIRRGRLQEFIRNNQQENKNNDRTSNDQSNPPKILGEVPVILRGTTI 1523
            T EC  LK  +E L+R   L EFI                  N  +    V +I  G T+
Sbjct: 449  TAECRDLKTQVEDLVRNRYLDEFIDGTFPMEATTGEGEQGGRNLRREQPAVRMIAGGPTL 508

Query: 1524 SGESSSSRKNHARRARD--EIIHAAGRVNVTHQSAQNISFTEEEAARLQHPHDDALVVSV 1697
            +G+S+ SRKN+AR A    E++ +             I +T+E+   + +PH+DALV+  
Sbjct: 509  AGDSNRSRKNYARYAMTSKEVLFSTPAAKRARVRQVPIMWTDEDEEGILYPHEDALVIKA 568

Query: 1698 NISNYLVHRVLIDTGSSVDIIFINALEKLEIQSSQLQPVTSPLVGFSREQATPVGKITLP 1877
             +++    R+LIDTGSSVD++F + LE++ I   +L+   + L GF   +  P+G + LP
Sbjct: 569  TVASKEFDRILIDTGSSVDVLFKSTLEEMGIADRKLEYTNTSLKGFGGGKLVPLGVVELP 628

Query: 1878 STFGSSPNLKTVMTEYLVMGCSSPYNAILGRPTLNRLHAVTSTYHLIVKFPTDNGVGKVL 2057
             T GSSP  +T++ +++V+    PY  ILGRP L    AV S ++L +K+  +  VG V 
Sbjct: 629  ITIGSSPTERTMILDFVVVDEEGPYQMILGRPFLRMSKAVLSNHYLALKYRVNGIVGVVR 688

Query: 2058 GSQKIARECNVAGLSKKARPTTILQIDEDARDKLNNSEPAEETKLILLDPADPNKKTRIG 2237
            G Q+IAR C  + + +  + T++   D    +K    EP E+ + + L P +P K  RIG
Sbjct: 689  GGQRIARGCYSSAVREAMQITSL---DTRVENKKGRQEPVEDLETVSLGPENPGKTIRIG 745

Query: 2238 ARLTAEDKIKLTTFLQQESDVMAFSHQDMPGIDPNVITHQLSIQPGARPVKQKKRQMAME 2417
            +RL  E K +L   LQ  +DV A++H+DMPGIDP V  H+L+I+ GAR V+QK+R    E
Sbjct: 746  SRLEGEQKQELVKCLQAHADVFAWTHEDMPGIDPEVACHRLAIKKGARAVRQKRRCFNQE 805

Query: 2418 RSMAAKEEVEKLLKVGFIDKTMYPEWIANVVLVKKNNGKWRMCVDYIDLNKACPKDNYPL 2597
            R  A   EVEKLL+ GFI +  YPEWI+NVVLVKK NGKWRMCVD+ DLNKACPKD++PL
Sbjct: 806  RYEAINGEVEKLLRAGFIREVSYPEWISNVVLVKKANGKWRMCVDFTDLNKACPKDSFPL 865

Query: 2598 PSIDRLVDSTAGHKILSLMDAFSGYNQIMMHPSDMEKTTFITNEGLFYYRRMPFGLKNAG 2777
            P ID+LVDSTAGH +LS MDAFSGYNQI M+  D E T FITN+GLF YR MPFGLKNAG
Sbjct: 866  PKIDQLVDSTAGHGLLSFMDAFSGYNQIPMYEPDEESTAFITNQGLFCYRVMPFGLKNAG 925

Query: 2778 ATFQRLVDKMFSNLIGKTMEAYVDDLLVKSSEVDQHIKDLQEAFSIMRQYGMKLNPEKCV 2957
            AT+QRLV+K+F  LIGKTME YVDD++ KS    +H++ L+E F ++R+Y MKLNPEKC 
Sbjct: 926  ATYQRLVNKVFKPLIGKTMEVYVDDMITKSKVPKEHVRHLEETFELLRKYKMKLNPEKCA 985

Query: 2958 FGVSSGKFLGFMVSERGIEANPDKIKALINLKTPQSIKDIQSLNGRIAALGRFISKSTDR 3137
            FGV SGKFLGFMVS RGIEANP+KI+A++ + +P+++K++QSL G               
Sbjct: 986  FGVESGKFLGFMVSHRGIEANPEKIQAIVQMTSPRNLKEMQSLTG--------------- 1030

Query: 3138 MQPFLKALKDGKKFGWNEECAKGFEKLKEYL--SKAPLLGKPNANERXXXXXXXXXXXXX 3311
                  + K+GK+   +        +L+  L  S A +  K                   
Sbjct: 1031 ------SDKEGKENRMDPRMRGSLPELEAILAASSAAVHTKGWGQVISVFGDIGSGRQFS 1084

Query: 3312 XXXTRENKQQHQPVYYISRALQGAEIRYTEIEKXXXXXXXXXXXXQPYFQAHPITVLTDR 3491
                RE +    P+YY +RAL  AE RY  +EK            +PYFQA P++V+T++
Sbjct: 1085 SVLVREEEGVQYPIYYTNRALLDAETRYPPLEKWALALVVAARKLRPYFQAFPVSVITNQ 1144

Query: 3492 PLAAILQKPESSGRLVKWAIEL 3557
            PL   L KP++SGRLVKWA+EL
Sbjct: 1145 PLRQTLHKPDASGRLVKWAVEL 1166


>gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1980

 Score =  641 bits (1653), Expect = 0.0
 Identities = 391/1185 (32%), Positives = 616/1185 (51%), Gaps = 58/1185 (4%)
 Frame = +3

Query: 231  QLKALQESIRN--NSNGGTSGSAENNRHIGNTIGAIREEITANQPEELGDLQYAPEESTD 404
            Q+  +Q S+ N  ++    + +A+N+  +         +    QPE + +  Y P+ +  
Sbjct: 234  QIPQIQTSLPNFTHTQSTNTQAAQNHHQVPQGFSPFHMQ----QPEMMFEQGYIPQMANH 289

Query: 405  QEQLWEKHFSEIQEKVTSLQSSKLSHSVEALITQSEPPFTKEILEAPLPPKFKVPQIEAY 584
             +     +  +I  +    Q ++        I  ++ P ++ +  AP P  FK+  I  Y
Sbjct: 290  IQ-----YAGQIPNQAFQFQPTQPYFQPTRAI-DTKNPLSQNLQMAPWPINFKLSNITKY 343

Query: 585  DGTKDPKDHVDNFRTLMVLQGVADLIMCRAFPTTLKGIAKAWYNKLKPGSIASFAELSTG 764
             G  DP +++  + T +   G  D    +  PT L+G+A +WY  + P +I S+  +   
Sbjct: 344  KGDTDPNEYLRVYETAVEAAGGDDTTKAKILPTMLEGVALSWYTTIPPMTIYSWEHMRDT 403

Query: 765  FVSHFIGNRRRRKPINSLFAIKQNPEEKLKSFIARFRTVVLDIDDMNDKVAISAFTTGLY 944
            F + FIG     K  + L+A+KQ P E L+SFI +F  V   I  ++D++ I+A    L 
Sbjct: 404  FRAGFIGAYEEPKEADDLYAMKQLPGETLRSFIVKFSRVRCQIRHVDDEMLIAAAKRALL 463

Query: 945  KSDCLKDLAMRPPETYAELLLRVDEHVTAQEIMDSARIEEKPQNKRPREEERSHQTSGKA 1124
                  DLA   P+T  +L  +++     +E  D  R++E+      +++ ++ Q S   
Sbjct: 464  PGPLRFDLARNRPKTAKDLFEKMESFARGEE--DELRVQEEEAVLLGKKQSKNKQISQGE 521

Query: 1125 RPRNEAT-REIRRPREDYKP---------------------------REEYNNYTPLNTS 1220
              + E T +  ++ + DYK                            R   NN+      
Sbjct: 522  EQKGENTGKPWKKFKSDYKQDQKKQVNFIGDGSNNEREKGKHQWDNTRRGRNNWGQFGKG 581

Query: 1221 RETVYN----------RVYQLGILSRPPQMN---------PKFQRNTNKYCRYHRDNGHT 1343
            R   +N               G  ++P Q              +   +K+C  H   GH+
Sbjct: 582  RGQWWNSGRGRGRWWNNERGKGRENKPDQTKFCQTHGPGGHSTEECYSKFCHIHGPGGHS 641

Query: 1344 TDECIHLKNDIERLIRRGRLQEFIRNNQQENKNNDRTSNDQSNPP----KILGEVP---- 1499
            T+EC  + + +E+ + R         N+ E   + R  N    P     + + EVP    
Sbjct: 642  TEECRQMTHLLEKHVNR-------YENKYEGARDQRGQNAIKAPQVMKIEAIEEVPKRVI 694

Query: 1500 -VILRGTTISGESSSSRKNHARRARDEIIHAAGRVNVTHQSAQNISFTEEEAARLQHPHD 1676
              I  G+++  ES   RK + R+          +  V  ++   ISF  E+A  +  PH 
Sbjct: 695  NAITGGSSLGVESKRQRKAYVRQVNHVGTIYQSKPPVYSKTV--ISFGPEDAEGILFPHQ 752

Query: 1677 DALVVSVNISNYLVHRVLIDTGSSVDIIFINALEKLEIQSSQLQPVTSPLVGFSREQATP 1856
            D LVVSV I+   V RVLID GSS D++F +A +K++I   +L     PL GF  +Q   
Sbjct: 753  DPLVVSVEIAQCEVQRVLIDGGSSADVLFYDAFKKMQIPEDRLTNAGVPLQGFGGQQVHA 812

Query: 1857 VGKITLPSTFGSSPNLKTVMTEYLVMGCSSPYNAILGRPTLNRLHAVTSTYHLIVKFPTD 2036
            +GKI+L   FG   N++     + V+     YNAILGR T+N   A+    ++ +K P  
Sbjct: 813  IGKISLQVVFGKGTNVRKEEIVFDVVDMPYQYNAILGRSTINIFEAIIHHNYICMKLPGP 872

Query: 2037 NGVGKVLGSQKIARECNVAGLSKKARPTTILQIDEDARDKLNNSEPAEETKLILLDPADP 2216
             GV  V G Q +AR+  + G +   +   ++   +    K+    P  +TK + LD  DP
Sbjct: 873  RGVITVRGEQLVARKYELQG-TPSVKGVHVVDQKQGEYIKIQKPIPEGKTKKVQLDEHDP 931

Query: 2217 NKKTRIGARLTAEDKIKLTTFLQQESDVMAFSHQDMPGIDPNVITHQLSIQPGARPVKQK 2396
             K   IG  L    + ++   +++   V A+S  ++ G+D ++I H L+I+ G +P KQK
Sbjct: 932  GKFILIGENLEKHIEEEILKVVKENMAVFAWSPDELQGVDRSLIEHNLAIKSGYKPKKQK 991

Query: 2397 KRQMAMERSMAAKEEVEKLLKVGFIDKTMYPEWIANVVLVKKNNGKWRMCVDYIDLNKAC 2576
             R+M+ +R  AAK E+EKLLK   I + M+PEW+AN VLVKK NGKWRMC+D+ DLNKAC
Sbjct: 992  LRRMSTDRQQAAKIELEKLLKAKVIREVMHPEWLANPVLVKKANGKWRMCIDFTDLNKAC 1051

Query: 2577 PKDNYPLPSIDRLVDSTAGHKILSLMDAFSGYNQIMMHPSDMEKTTFITNEGLFYYRRMP 2756
            PKD++PLP ID+LVD+TAG +++S +DA+SGY+Q+ M   D EKT+FIT  G + + RMP
Sbjct: 1052 PKDDFPLPRIDQLVDATAGCELMSFLDAYSGYHQVFMVKEDEEKTSFITPFGTYCFIRMP 1111

Query: 2757 FGLKNAGATFQRLVDKMFSNLIGKTMEAYVDDLLVKSSEVDQHIKDLQEAFSIMRQYGMK 2936
            FGLKNAGATF RL+ K+ +  +G+ +EAYVDD++VKS +   H KDLQE F  +R+  +K
Sbjct: 1112 FGLKNAGATFARLIGKVLAKQLGRNVEAYVDDIVVKSKQAFTHGKDLQETFENLRKCSVK 1171

Query: 2937 LNPEKCVFGVSSGKFLGFMVSERGIEANPDKIKALINLKTPQSIKDIQSLNGRIAALGRF 3116
            LNPEKCVFGV +GK LGF+VS+RGIEANPDKI A+  ++ P++ +++Q L GR+A+L RF
Sbjct: 1172 LNPEKCVFGVRAGKLLGFLVSKRGIEANPDKIAAIHQMEPPKNTREVQRLTGRMASLSRF 1231

Query: 3117 ISKSTDRMQPFLKALKDGKKFGWNEECAKGFEKLKEYLSKAPLLGKPNANERXXXXXXXX 3296
            +SKS ++  PF K L+    F W  EC + F+ LK+YL + P L  P   +         
Sbjct: 1232 LSKSAEKGLPFFKTLRGANTFEWTAECQQAFDDLKKYLHEMPTLASPPKGQPLLMYVAAT 1291

Query: 3297 XXXXXXXXTRENKQQHQPVYYISRALQGAEIRYTEIEKXXXXXXXXXXXXQPYFQAHPIT 3476
                     +E + +  PVY++S ALQG + RY+E+EK            + YF +H IT
Sbjct: 1292 PATVSAVLVQEEENRQVPVYFVSEALQGPKTRYSEVEKLIYAIVMASRKLRHYFLSHDIT 1351

Query: 3477 VLTDRPLAAILQKPESSGRLVKWAIELGEFDIDFRPRKSMSAQLV 3611
            + +  P+  +L   E +GR+ KWA+EL  FD+ +  R ++ +Q++
Sbjct: 1352 IPSAYPIGEVLTNKEVAGRIAKWAMELLPFDLKYTSRTAIKSQVL 1396


>dbj|BAK61840.1| gag-pol polyprotein [Citrus unshiu]
          Length = 1542

 Score =  630 bits (1625), Expect = e-177
 Identities = 386/1075 (35%), Positives = 559/1075 (52%), Gaps = 38/1075 (3%)
 Frame = +3

Query: 495  LITQSEPPFTKEILEAPLPPKFKVPQIEAYDGTKDPKDHVDNFRTLMVLQGVADLIMCRA 674
            ++   E P + EI+   +P  F+ P ++ Y    D   H++ F  +  + G+     CR 
Sbjct: 183  IMLDEESPLSAEIMGTVIPRDFRFPDLK-YSERSDSLVHIERFNDMTGVHGLTPAQRCR- 240

Query: 675  FPTTLKGIAKAWYNKLKPGSIASFAELSTGFVSHFIGNRRRRKPINSLFAIKQNPEEKLK 854
                           L  GSI  + ++       F G       +  L  +KQ   E L+
Sbjct: 241  ---------------LPRGSIKGYEQMCQELTEQFRGAVAPEDDMMELIEMKQEEHESLQ 285

Query: 855  SFIARFRTVVLDIDDMNDKVAISAFTTGLYKSDCLKDLAMRPPETYAELLLRVDEHVTAQ 1034
             F+ R+  VVLD+   N   A+     G+     L +L     + Y+    +    +  +
Sbjct: 286  DFVKRYHRVVLDLGAFNHPQALRGLKDGVMIGRLLYNLRNSLVQNYSAGYEQARRDIEIE 345

Query: 1035 EIMDSARIEEKPQNKRPREEERSHQTSG-------------------------------- 1118
            E   SARI+ +   +  R+E R+   SG                                
Sbjct: 346  E-EKSARIKSEQLKELRRKERRTPSGSGSGKRARKSSAMGAISARSRHYPMAQRPQQFQH 404

Query: 1119 -KARPRNEATREIRRPREDYKPRE----EYNNYTPLNTSRETVYNRVYQLGILSRP-PQM 1280
             +A+P      E +R    Y+P          YTPL    E +Y R+   G+L  P P  
Sbjct: 405  NRAQPPRPLFPERQREFRQYQPGTISTIAEQQYTPLKVHMEELYERIEGRGLLYPPAPIT 464

Query: 1281 NPKFQRNTNKYCRYHRDNGHTTDECIHLKNDIERLIRRGRLQEFIRNNQQENKNNDRTSN 1460
             P  +R+ +++C++H  +G+T  +C  LK  +E L+R   L E++               
Sbjct: 465  KPAHRRDKSRFCKFHDTHGNTISQCRDLKIQVEDLVRNRYLDEYVD-------------- 510

Query: 1461 DQSNPPKILGEVPVILRGTTISGESSSSRKNHARRARDEIIHAAGRVNVTHQSAQNISFT 1640
                     G  PV+        ES  +R     R+ +                + ++  
Sbjct: 511  ---------GMTPVL--------ESPYTRDEGMERSLE---------------CEQLTIY 538

Query: 1641 EEEAARLQHPHDDALVVSVNISNYLVHRVLIDTGSSVDIIFINALEKLEIQSSQLQPVTS 1820
            ++E   L + H+DALV+   ++   + R+L+DTGSSVDI+F +AL+ + I   +L+   +
Sbjct: 539  DDEEGIL-YLHEDALVIKAMVAAIELRRILVDTGSSVDILFKSALDDMGISDLKLERTNT 597

Query: 1821 PLVGFSREQATPVGKITLPSTFGSSPNLKTVMTEYLVMGCSSPYNAILGRPTLNRLHAVT 2000
             L GF   + TP+G   LP T GS P  + VM  ++V+   SPY  ILGRP +     V 
Sbjct: 598  SLKGFGGGRLTPMGINELPITVGSKPFERIVMLYFVVVEERSPYQMILGRPFIRISQCVI 657

Query: 2001 STYHLIVKFPTDNGVGKVLGSQKIARECNVAGLSKKARPTTILQIDEDARDKLNNSEPAE 2180
            ST++L +K+  +  VG V G QK+ R C      +  + T++   D     K    EP E
Sbjct: 658  STHYLALKYRVNGVVGVVKGVQKMTRSCYATAAKETLQVTSL---DNRGDSKKGRQEPVE 714

Query: 2181 ETKLILLDPADPNKKTRIGARLTAEDKIKLTTFLQQESDVMAFSHQDMPGIDPNVITHQL 2360
            +   + ++ ++P++  +IG+ L    K +L  +LQ  +D+ A+SH+DMP ID  +  H+L
Sbjct: 715  KLDEVFVNKSNPSRMVKIGSGLGETIKGELVKYLQSYADIFAWSHEDMPRIDHGIAYHKL 774

Query: 2361 SIQPGARPVKQKKRQMAMERSMAAKEEVEKLLKVGFIDKTMYPEWIANVVLVKKNNGKWR 2540
            +I+ GA PV+QK+R    ER  A   EVE+LLK GFI KT Y EWI+NV+LVKK +   R
Sbjct: 775  AIRKGAMPVRQKRRCFNQERYEAINAEVEQLLKAGFIRKTKYSEWISNVILVKKAS---R 831

Query: 2541 MCVDYIDLNKACPKDNYPLPSIDRLVDSTAGHKILSLMDAFSGYNQIMMHPSDMEKTTFI 2720
            MCVD+ DLNKACPKD++PL  ID+LVDSTAGH +LS MD FSGYNQI M   D E TTFI
Sbjct: 832  MCVDFTDLNKACPKDSFPLQKIDQLVDSTAGHSLLSFMDTFSGYNQIPMDEQDEESTTFI 891

Query: 2721 TNEGLFYYRRMPFGLKNAGATFQRLVDKMFSNLIGKTMEAYVDDLLVKSSEVDQHIKDLQ 2900
            TN GLF YR MPFGLKN GAT+QRLV+K+F  LIG TME YVDD++ KS +   H+K L+
Sbjct: 892  TNIGLFCYRVMPFGLKNTGATYQRLVNKIFKPLIGHTMEVYVDDMITKSKKPKDHVKHLE 951

Query: 2901 EAFSIMRQYGMKLNPEKCVFGVSSGKFLGFMVSERGIEANPDKIKALINLKTPQSIKDIQ 3080
            E F ++R+Y MKLNPEKC FGVSSGKFLGF+VS R I+ NP KI+A+  +K+ +++K++Q
Sbjct: 952  ETFELLRKYEMKLNPEKCAFGVSSGKFLGFLVSHRRIKVNPAKIRAVTEIKSLRTVKEVQ 1011

Query: 3081 SLNGRIAALGRFISKSTDRMQPFLKALKDGKKFGWNEECAKGFEKLKEYLSKAPLLGKPN 3260
            S  G++AAL RFIS+               +K  W  EC + F +LKEYL++APLL  P 
Sbjct: 1012 SFTGKLAALNRFISR---------------RKMEWTSECEEAFGQLKEYLARAPLLSTPR 1056

Query: 3261 ANERXXXXXXXXXXXXXXXXTRENKQQHQPVYYISRALQGAEIRYTEIEKXXXXXXXXXX 3440
              ++                 RE + +  PVYY S+AL  A I  T   K          
Sbjct: 1057 EGDQLYLYLAISKWATSSVLVREYEGKQHPVYYTSKALALALI--TAARK---------- 1104

Query: 3441 XXQPYFQAHPITVLTDRPLAAILQKPESSGRLVKWAIELGEFDIDFRPRKSMSAQ 3605
              +PYFQAHPI V+TD+ L   LQKP++SGRLVKW++EL EFD+ +RPR  +  Q
Sbjct: 1105 -LRPYFQAHPIVVMTDQSLRQTLQKPDASGRLVKWSVELSEFDLSYRPRGVIKTQ 1158


>gb|ABA95343.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 2289

 Score =  591 bits (1523), Expect = e-166
 Identities = 364/1059 (34%), Positives = 547/1059 (51%), Gaps = 30/1059 (2%)
 Frame = +3

Query: 519  FTKEILEAPLPPKFKVPQIEAYDGTKDPKDHVDNFRTLMVLQGVADLIMCRAFPTTLKGI 698
            FT ++     P  FK   IE YDGT +P+  +  +   +   G  +  M    P  L   
Sbjct: 694  FTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANYLPVALADS 753

Query: 699  AKAWYNKLKPGSIASFAELSTGFVSHFIGNRRRRKPINSLFAIKQNPEEKLKSFIARFRT 878
            A++W + L  G+I S+AEL   F+++F G   R      L+ + Q   E L+ +I RF  
Sbjct: 754  ARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLREYIRRFSE 813

Query: 879  VVLDIDDMNDKVAISAFTTGLYKSDCLKDLAMRPPETYAELLLRVDEHVTAQEIMDSARI 1058
                I D+ D V I+AFT G+   + +     +PP T   +  + +E+  A++ + +++ 
Sbjct: 814  QRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEYAKAEDAVTASK- 872

Query: 1059 EEKPQNKRPREEERSHQTSGKARPRNEATREIRRPREDYKPREEYNNYTPLNTSRETVYN 1238
                    P  + ++   +G     N   R+ R+P E           T  ++SR+   +
Sbjct: 873  -----QSGPSWKPKNTPATGGGGSNNHKDRK-RKPEELVA--------TAAHSSRQR--S 916

Query: 1239 RVYQLGILSRPPQMNPKFQRNTNKYCRYHRDNGHTTDECIHLKNDIERLIRRGRLQEFIR 1418
            RV               F +  N  C +H ++ H   EC   K   E+  +        R
Sbjct: 917  RVNT-------------FDKIMNSQCPHHPNSNHVAKECFIYKQFAEQYTKS------TR 957

Query: 1419 NNQQENKNNDRTSNDQSNPPKILGEVPVI--LRGTTISGESSSSRKNHARRARDEIIHAA 1592
             N  E ++  R  +D   P         +  + G  ++ ES   +K   R      I+A 
Sbjct: 958  KNSDEEQSTSRKKDDGDTPVGFQDHRKELNHIFGGPLAYESKRKQKLTERE-----INA- 1011

Query: 1593 GRVNVTHQSAQNISFTE--------EEAARLQHPHDDALVVSVNISNYLVHRVLIDTGSS 1748
                V   + Q + ++E        +   R+ HP    LV+   + N  + R LID GS+
Sbjct: 1012 ----VQPDTPQYLRWSEIAIKFDRSDHPDRVVHPGRYPLVLDPVVRNVKLRRTLIDGGSA 1067

Query: 1749 VDIIFINALEKLEIQSSQLQPVTSPLVG-FSREQATPVGKITLPSTFGSSPNLKTVMTEY 1925
            ++I+F   L+ ++I  S+L+P  +P  G      ATP+G+ITLP TFG+  N +T    +
Sbjct: 1068 LNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGTRENFRTENISF 1127

Query: 1926 LVMGCSSPYNAILGRPTLNRLHAVTSTYHLIVKFPTDNGVGKVLGSQKIARECN------ 2087
             V    + Y+AILGRP L +  AV    ++++K P   GV  +    K A  C+      
Sbjct: 1128 EVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRGVLSLRSDIKQAVTCDKESCDM 1187

Query: 2088 -----VAGLSKKAR--PTTILQIDEDARDKLNNSEPAEETKLILLDPADPNKKTRIGARL 2246
                 +A   ++ R   TT+ + +  A     + E   ETK I LDP+DP K   IGA L
Sbjct: 1188 AQTREMASAREEIRLAATTVSEGEVPAAKISKSGETEAETKKIPLDPSDPTKTAVIGAEL 1247

Query: 2247 TAEDKIKLTTFLQQESDVMAFSHQDMPGIDPNVITHQLSIQPGARPVKQKKRQMAMERSM 2426
                             + A+   DMPGI   VI H L ++  A+P+KQ+ R+ A +R  
Sbjct: 1248 DY---------------IFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKD 1292

Query: 2427 AAKEEVEKLLKVGFIDKTMYPEWIANVVLVKKNNGKWRMCVDYIDLNKACPKDNYPLPSI 2606
            A KEE+ KLL  GFI + ++P+W+AN VLV+K  G+WRMCVDY DLNK+CPKD + LP I
Sbjct: 1293 AIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRI 1352

Query: 2607 DRLVDSTAGHKILSLMDAFSGYNQIMMHPSDMEKTTFITNEGLFYYRRMPFGLKNAGATF 2786
            D++VDSTAG ++LS +D +SGY+QI +  SD  KT+FIT  G + Y  MPFGLKNAGAT+
Sbjct: 1353 DQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATY 1412

Query: 2787 QRLVDKMFSNLIGKTMEAYVDDLLVKSSEVDQHIKDLQEAFSIMRQYGMKLNPEKCVFGV 2966
            QR++ + FS  IG+ +EAYVDD++VK+ + D  I DL+E F+ +R + MKLNPEKC FGV
Sbjct: 1413 QRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGV 1472

Query: 2967 SSGKFLGFMVSERGIEANPDKIKALINLKTPQSIKDIQSLNGRIAALGRFISKSTDRMQP 3146
             SGK LGFMVS RGI+ANP+K+ A++N+K P + KD+Q L G +AAL RF+S+  +R  P
Sbjct: 1473 PSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMP 1532

Query: 3147 FLKALKDGKKFGWNEECAKGFEKLKEYLSKAPLLGKPNANERXXXXXXXXXXXXXXXXTR 3326
            F K LK    F W  E  K FE  K+ L+K P+L  P+  E                   
Sbjct: 1533 FFKLLKKTDNFQWGPEAQKAFEDFKQLLTKPPVLASPHPQEPLLLYVSATSQVVSTVLVV 1592

Query: 3327 ENKQQ------HQPVYYISRALQGAEIRYTEIEKXXXXXXXXXXXXQPYFQAHPITVLTD 3488
            E +++       +P+Y++S  L  ++ RY +++K              YFQ HP+TV+T 
Sbjct: 1593 EREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHPVTVVTS 1652

Query: 3489 RPLAAILQKPESSGRLVKWAIELGEFDIDFRPRKSMSAQ 3605
             PL  +L   E++GR+ KWA+EL   DI F+PR S+ +Q
Sbjct: 1653 FPLGDVLHNREANGRIAKWALELMSLDISFKPRTSIKSQ 1691


>emb|CAE04995.2| OSJNBb0093G06.3 [Oryza sativa Japonica Group]
          Length = 1986

 Score =  582 bits (1501), Expect = e-163
 Identities = 354/1044 (33%), Positives = 534/1044 (51%), Gaps = 15/1044 (1%)
 Frame = +3

Query: 519  FTKEILEAPLPPKFKVPQIEAYDGTKDPKDHVDNFRTLMVLQGVADLIMCRAFPTTLKGI 698
            FT ++     P  FK   IE YDGT +P+  +  +   +   G  +  M    P  L   
Sbjct: 421  FTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANYLPVALADS 480

Query: 699  AKAWYNKLKPGSIASFAELSTGFVSHFIGNRRRRKPINSLFAIKQNPEEKLKSFIARFRT 878
            A++W + L  G+I S+AEL   F+++F G   R      L+ + Q   E L+ +I RF  
Sbjct: 481  ARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLREYIRRFSE 540

Query: 879  VVLDIDDMNDKVAISAFTTGLYKSDCLKDLAMRPPETYAELLLRVDEHVTAQEIMDSARI 1058
                I D++D V I+AFT G+   + +     +PP T   +  + +E+  A++ + +++ 
Sbjct: 541  QRNKISDISDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEYAKAEDAVTASK- 599

Query: 1059 EEKPQNKRPREEERSHQTSGKARPRNEATREIRRPREDYKPREEYNNYTPLNTSRETVYN 1238
                    P  + ++   +G     N   R+ R+P E           T  ++SR+   +
Sbjct: 600  -----QSGPSWKPKNTPATGGGGSNNHKDRK-RKPEELVA--------TAAHSSRQR--S 643

Query: 1239 RVYQLGILSRPPQMNPKFQRNTNKYCRYHRDNGHTTDECIHLKNDIERLIRRGRLQEFIR 1418
            RV               F +  N  C +H ++ H   EC   K   E+  +        R
Sbjct: 644  RVNT-------------FDKIMNSQCPHHPNSNHVAKECFIYKQFAEQYTKS------TR 684

Query: 1419 NNQQENKNNDRTSNDQSNPPKILGEVPVILRGTTISGESSSSRKNHARRARDEIIHAAGR 1598
             N  E ++  R  +D   P         +     I G   +      ++  +  I+A   
Sbjct: 685  KNSDEEQSTSRKKDDGDTPAGFQDHRKEL---NHIFGGPMAYESKRKQKLTEREINA--- 738

Query: 1599 VNVTHQSAQNISFTE--------EEAARLQHPHDDALVVSVNISNYLVHRVLIDTGSSVD 1754
              V   + Q + ++E        +   R+ HP    LV+   + N  + R LID GS+++
Sbjct: 739  --VQPDTPQYLRWSEIAIKFDRSDHPDRVVHPGRYPLVLDPVVRNVKLRRTLIDGGSALN 796

Query: 1755 IIFINALEKLEIQSSQLQPVTSPLVG-FSREQATPVGKITLPSTFGSSPNLKTVMTEYLV 1931
            I+F   L+ ++I  S+L+P  +P  G      ATP+G+ITLP TFG+  N +T    + V
Sbjct: 797  ILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGTRENFRTENISFEV 856

Query: 1932 MGCSSPYNAILGRPTLNRLHAVTSTYHLIVKFPTDNGVGKVLGSQKIARECNVAGLSKKA 2111
                + Y+AILGRP L +  AV    ++++K P   GV  +    K A  C         
Sbjct: 857  ADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRGVLSLRSDIKQAVTC--------- 907

Query: 2112 RPTTILQIDEDARDKLNNSEPAEETKLILLDPADPNKKTRIGARLTAEDKIKLTTFLQQE 2291
                    D+++ D     E A   + I               RL A  +  L TFLQ  
Sbjct: 908  --------DKESCDMAQTREMASAREEI---------------RLAATTESALITFLQNN 944

Query: 2292 SDVMAFSHQDMPGIDPNVITHQLSIQPGARPVKQKKRQMAMERSMAAKEEVEKLLKVGFI 2471
             D+ A+   DMPGI   VI H L ++  A+P+KQ+ R+ A +R  A KEE+ KLL  GFI
Sbjct: 945  KDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFI 1004

Query: 2472 DKTMYPEWIANVVLVKKNNGKWRMCVDYIDLNKACPKDNYPLPSIDRLVDSTAGHKILSL 2651
             + ++P+W+AN VLV+K  G+WRMCVDY DLNK+CPKD + LP ID++VDSTAG ++LS 
Sbjct: 1005 KEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSF 1064

Query: 2652 MDAFSGYNQIMMHPSDMEKTTFITNEGLFYYRRMPFGLKNAGATFQRLVDKMFSNLIGKT 2831
            +D +SGY+QI +  SD  KT+FIT  G + Y  MPFGLKNAGAT+QR++ + FS  IG+ 
Sbjct: 1065 LDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRN 1124

Query: 2832 MEAYVDDLLVKSSEVDQHIKDLQEAFSIMRQYGMKLNPEKCVFGVSSGKFLGFMVSERGI 3011
            +EAYVDD++VK+ + D  I DL+E F+ +R + MKLNPEKC FGV SGK LGFMVS RGI
Sbjct: 1125 VEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGI 1184

Query: 3012 EANPDKIKALINLKTPQSIKDIQSLNGRIAALGRFISKSTDRMQPFLKALKDGKKFGWNE 3191
            +ANP+K+ A++N+K P + KD+Q L G +AAL RF+S+  +R  PF K LK    F W  
Sbjct: 1185 QANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGP 1244

Query: 3192 ECAKGFEKLKEYLSKAPLLGKPNANERXXXXXXXXXXXXXXXXTRENKQQ------HQPV 3353
            E  K FE  K+ L+K P+L  P+  E                   E +++       +P+
Sbjct: 1245 EAQKAFEDFKQLLTKPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPI 1304

Query: 3354 YYISRALQGAEIRYTEIEKXXXXXXXXXXXXQPYFQAHPITVLTDRPLAAILQKPESSGR 3533
            Y++S  L  ++ RY +++K              YFQ H +TV+T  PL  +L   E++GR
Sbjct: 1305 YFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSFPLGDVLHNREANGR 1364

Query: 3534 LVKWAIELGEFDIDFRPRKSMSAQ 3605
            + KWA+EL   DI F+PR S+ +Q
Sbjct: 1365 IAKWALELMSLDISFKPRTSIKSQ 1388


>gb|AAN65036.1| putative RIRE2 retrotransposon protein [Oryza sativa Japonica Group]
          Length = 1300

 Score =  581 bits (1498), Expect = e-163
 Identities = 358/1053 (33%), Positives = 538/1053 (51%), Gaps = 24/1053 (2%)
 Frame = +3

Query: 519  FTKEILEAPLPPKFKVPQIEAYDGTKDPKDHVDNFRTLMVLQGVADLIMCRAFPTTLKGI 698
            FT ++     P  FK   IE YD T +P+  +  +   +   G     M    P  L   
Sbjct: 213  FTNDLRRVDWPAGFKSTGIEKYDSTTNPESWLTVYGLAIRAAGGDSKAMANYLPVALADS 272

Query: 699  AKAWYNKLKPGSIASFAELSTGFVSHFIGNRRRRKPINSLFAIKQNPEEKLKSFIARFRT 878
            A++W + L  G+I S+AEL   F+++F G   R      L+ + Q   E L+ +I RF  
Sbjct: 273  ARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQFDLYNVVQKSGESLRDYIRRFSE 332

Query: 879  VVLDIDDMNDKVAISAFTTGLYKSDCLKDLAMRPPETYAELLLRVDEHVTAQEIMDSARI 1058
            +   I D+ D V I+A T G+   D +     +PP T  ++  + +E+  A++ + +++ 
Sbjct: 333  LRNKISDITDDVIIAALTKGIRHEDLVGKFGRKPPRTVKQMFKKANEYAKAEDAITASK- 391

Query: 1059 EEKPQNKRPREEERSHQTSGKARPRNEATREIRRPREDYKPREEYNNYTPLNTSRETVYN 1238
                Q+    + ++   T+G +   N   R+        KP E     +P +  R  V  
Sbjct: 392  ----QSGTTWKPKKDTPTAGGSGSNNHKDRK-------RKPEELVATTSPPSRQRSRVNT 440

Query: 1239 RVYQLGILSRPPQMNPKFQRNTNKYCRYHRDNGHTTDECIHLKNDIERLIRRGRL-QEFI 1415
                             F +  N  C +H ++ H   +C   K   E+ ++  R   +  
Sbjct: 441  -----------------FDKIMNSQCPHHPNSNHVAKDCFVYKQFAEQYVKNARKPSDGD 483

Query: 1416 RNNQQENKNNDRTSNDQSNPPKILGEVPVILRGTTISGESSSSRKNHARRARDEIIHAA- 1592
            +    +N + D       +  K L  +     G  ++ ES   +K   R      I+A  
Sbjct: 484  QGTSNKNDDEDDAPTGFQDHRKELNHI----FGGPLAYESKRKQKLTERE-----INAVQ 534

Query: 1593 -GRVNVTHQSAQNISFTEEEAA-RLQHPHDDALVVSVNISNYLVHRVLIDTGSSVDIIFI 1766
                     S   I F   +   R+ HP    LV+   + N  + R LID GS+++I+F 
Sbjct: 535  PNTPQYLRWSETAIKFDRSDHPDRVVHPGRYPLVLDPVVRNVKLRRTLIDGGSALNILFA 594

Query: 1767 NALEKLEIQSSQLQPVTSPLVG-FSREQATPVGKITLPSTFGSSPNLKTVMTEYLVMGCS 1943
            N L+ ++I  ++L+P  +P  G      ATP+G+ITLP TFG+  N +T    + V    
Sbjct: 595  NTLDDMQIPRTELKPSNAPFHGVIPGLSATPLGQITLPVTFGTQENFRTENVCFEVADFE 654

Query: 1944 SPYNAILGRPTLNRLHAVTSTYHLIVKFPTDNGVGKVLGSQKIARECN------------ 2087
            + Y+AILGRP L    AV    ++++K P   GV  +    K A  C+            
Sbjct: 655  TAYHAILGRPALAEFMAVPHYTYMMMKMPGPRGVISLQSDIKQAVTCDKESCEMAQTHEI 714

Query: 2088 -VAGLSKKARPTTILQIDEDARDKLNNSEPAEETKLILLDPADPNKKTRIGARLTAEDKI 2264
             +A    +   TT  + +  A       E   +TK I LDP+DP+K        TA +K 
Sbjct: 715  TLAREEIQLAATTASEGEVPATKLTKTDESDAKTKKITLDPSDPDK--------TANNK- 765

Query: 2265 KLTTFLQQESDVMAFSHQDMPGIDPNVITHQLSIQPGARPVKQKKRQMAMERSMAAKEEV 2444
                      D+ A+   DMPGI   VI H L ++  A+P+KQ+ R+ A  R  A KEE+
Sbjct: 766  ----------DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQNRKDAIKEEL 815

Query: 2445 EKLLKVGFIDKTMYPEWIANVVLVKKNNGKWRMCVDYIDLNKACPKDNYPLPSIDRLVDS 2624
             KLL VGFI + ++P+W+AN VLV+K   +WRMCVDY DLNK+CPKD + LP ID++VDS
Sbjct: 816  TKLLAVGFIKEVLHPDWLANPVLVRKKTEQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDS 875

Query: 2625 TAGHKILSLMDAFSGYNQIMMHPSDMEKTTFITNEGLFYYRRMPFGLKNAGATFQRLVDK 2804
            TAG ++LS +D +SGY+QI +  SD  KT+FIT  G + Y  MPFGLKNAGAT+QR++ +
Sbjct: 876  TAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYITMPFGLKNAGATYQRMIQR 935

Query: 2805 MFSNLIGKTMEAYVDDLLVKSSEVDQHIKDLQEAFSIMRQYGMKLNPEKCVFGVSSGKFL 2984
             FS  IG+ +EAYVDD++VK+   D  I DL+E F+ +R + MKLNPEKC++GV SGK L
Sbjct: 936  CFSTQIGRNVEAYVDDVVVKTKHKDDLIADLEETFASIRAFRMKLNPEKCIYGVPSGKLL 995

Query: 2985 GFMVSERGIEANPDKIKALINLKTPQSIKDIQSLNGRIAALGRFISKSTDRMQPFLKALK 3164
            GFMVS+RGI+ANP+KI A++N+K P S KD+Q L G +AAL RF+S+  +R  PF K LK
Sbjct: 996  GFMVSQRGIQANPEKINAILNMKPPSSQKDVQKLTGCMAALSRFVSQLGERGMPFFKLLK 1055

Query: 3165 DGKKFGWNEECAKGFEKLKEYLSKAPLLGKPNANERXXXXXXXXXXXXXXXXTRENKQQ- 3341
                F W  E  K FE  K+ L+  P+L  P+  E                   E +++ 
Sbjct: 1056 KTDNFQWGPEAQKAFEDFKKLLTTPPVLASPHPQEPLLLYVSATSQVVSMVLVVEREEEG 1115

Query: 3342 -----HQPVYYISRALQGAEIRYTEIEKXXXXXXXXXXXXQPYFQAHPITVLTDRPLAAI 3506
                  +P+Y++S  L  ++ RY +++K              YFQ+H +TV+T  PL  I
Sbjct: 1116 HIQKVQRPIYFVSEVLADSKTRYPQVQKLLYGVLITVRKLSHYFQSHSVTVVTSFPLGDI 1175

Query: 3507 LQKPESSGRLVKWAIELGEFDIDFRPRKSMSAQ 3605
            L   E++GR+ KWA+EL   DI F+PR S+ +Q
Sbjct: 1176 LHNREANGRIAKWALELMSLDISFKPRTSIKSQ 1208


>gb|ABF99143.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1318

 Score =  581 bits (1498), Expect = e-163
 Identities = 358/1053 (33%), Positives = 538/1053 (51%), Gaps = 24/1053 (2%)
 Frame = +3

Query: 519  FTKEILEAPLPPKFKVPQIEAYDGTKDPKDHVDNFRTLMVLQGVADLIMCRAFPTTLKGI 698
            FT ++     P  FK   IE YD T +P+  +  +   +   G     M    P  L   
Sbjct: 231  FTNDLRRVDWPAGFKSTGIEKYDSTTNPESWLTVYGLAIRAAGGDSKAMANYLPVALADS 290

Query: 699  AKAWYNKLKPGSIASFAELSTGFVSHFIGNRRRRKPINSLFAIKQNPEEKLKSFIARFRT 878
            A++W + L  G+I S+AEL   F+++F G   R      L+ + Q   E L+ +I RF  
Sbjct: 291  ARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQFDLYNVVQKSGESLRDYIRRFSE 350

Query: 879  VVLDIDDMNDKVAISAFTTGLYKSDCLKDLAMRPPETYAELLLRVDEHVTAQEIMDSARI 1058
            +   I D+ D V I+A T G+   D +     +PP T  ++  + +E+  A++ + +++ 
Sbjct: 351  LRNKISDITDDVIIAALTKGIRHEDLVGKFGRKPPRTVKQMFKKANEYAKAEDAITASK- 409

Query: 1059 EEKPQNKRPREEERSHQTSGKARPRNEATREIRRPREDYKPREEYNNYTPLNTSRETVYN 1238
                Q+    + ++   T+G +   N   R+        KP E     +P +  R  V  
Sbjct: 410  ----QSGTTWKPKKDTPTAGGSGSNNHKDRK-------RKPEELVATTSPPSRQRSRVNT 458

Query: 1239 RVYQLGILSRPPQMNPKFQRNTNKYCRYHRDNGHTTDECIHLKNDIERLIRRGRL-QEFI 1415
                             F +  N  C +H ++ H   +C   K   E+ ++  R   +  
Sbjct: 459  -----------------FDKIMNSQCPHHPNSNHVAKDCFVYKQFAEQYVKNARKPSDGD 501

Query: 1416 RNNQQENKNNDRTSNDQSNPPKILGEVPVILRGTTISGESSSSRKNHARRARDEIIHAA- 1592
            +    +N + D       +  K L  +     G  ++ ES   +K   R      I+A  
Sbjct: 502  QGTSNKNDDEDDAPTGFQDHRKELNHI----FGGPLAYESKRKQKLTERE-----INAVQ 552

Query: 1593 -GRVNVTHQSAQNISFTEEEAA-RLQHPHDDALVVSVNISNYLVHRVLIDTGSSVDIIFI 1766
                     S   I F   +   R+ HP    LV+   + N  + R LID GS+++I+F 
Sbjct: 553  PNTPQYLRWSETAIKFDRSDHPDRVVHPGRYPLVLDPVVRNVKLRRTLIDGGSALNILFA 612

Query: 1767 NALEKLEIQSSQLQPVTSPLVG-FSREQATPVGKITLPSTFGSSPNLKTVMTEYLVMGCS 1943
            N L+ ++I  ++L+P  +P  G      ATP+G+ITLP TFG+  N +T    + V    
Sbjct: 613  NTLDDMQIPRTELKPSNAPFHGVIPGLSATPLGQITLPVTFGTQENFRTENVCFEVADFE 672

Query: 1944 SPYNAILGRPTLNRLHAVTSTYHLIVKFPTDNGVGKVLGSQKIARECN------------ 2087
            + Y+AILGRP L    AV    ++++K P   GV  +    K A  C+            
Sbjct: 673  TAYHAILGRPALAEFMAVPHYTYMMMKMPGPRGVISLQSDIKQAVTCDKESCEMAQTHEI 732

Query: 2088 -VAGLSKKARPTTILQIDEDARDKLNNSEPAEETKLILLDPADPNKKTRIGARLTAEDKI 2264
             +A    +   TT  + +  A       E   +TK I LDP+DP+K        TA +K 
Sbjct: 733  TLAREEIQLAATTASEGEVPATKLTKTDESDAKTKKITLDPSDPDK--------TANNK- 783

Query: 2265 KLTTFLQQESDVMAFSHQDMPGIDPNVITHQLSIQPGARPVKQKKRQMAMERSMAAKEEV 2444
                      D+ A+   DMPGI   VI H L ++  A+P+KQ+ R+ A  R  A KEE+
Sbjct: 784  ----------DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQNRKDAIKEEL 833

Query: 2445 EKLLKVGFIDKTMYPEWIANVVLVKKNNGKWRMCVDYIDLNKACPKDNYPLPSIDRLVDS 2624
             KLL VGFI + ++P+W+AN VLV+K   +WRMCVDY DLNK+CPKD + LP ID++VDS
Sbjct: 834  TKLLAVGFIKEVLHPDWLANPVLVRKKTEQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDS 893

Query: 2625 TAGHKILSLMDAFSGYNQIMMHPSDMEKTTFITNEGLFYYRRMPFGLKNAGATFQRLVDK 2804
            TAG ++LS +D +SGY+QI +  SD  KT+FIT  G + Y  MPFGLKNAGAT+QR++ +
Sbjct: 894  TAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYITMPFGLKNAGATYQRMIQR 953

Query: 2805 MFSNLIGKTMEAYVDDLLVKSSEVDQHIKDLQEAFSIMRQYGMKLNPEKCVFGVSSGKFL 2984
             FS  IG+ +EAYVDD++VK+   D  I DL+E F+ +R + MKLNPEKC++GV SGK L
Sbjct: 954  CFSTQIGRNVEAYVDDVVVKTKHKDDLIADLEETFASIRAFRMKLNPEKCIYGVPSGKLL 1013

Query: 2985 GFMVSERGIEANPDKIKALINLKTPQSIKDIQSLNGRIAALGRFISKSTDRMQPFLKALK 3164
            GFMVS+RGI+ANP+KI A++N+K P S KD+Q L G +AAL RF+S+  +R  PF K LK
Sbjct: 1014 GFMVSQRGIQANPEKINAILNMKPPSSQKDVQKLTGCMAALSRFVSQLGERGMPFFKLLK 1073

Query: 3165 DGKKFGWNEECAKGFEKLKEYLSKAPLLGKPNANERXXXXXXXXXXXXXXXXTRENKQQ- 3341
                F W  E  K FE  K+ L+  P+L  P+  E                   E +++ 
Sbjct: 1074 KTDNFQWGPEAQKAFEDFKKLLTTPPVLASPHPQEPLLLYVSATSQVVSMVLVVEREEEG 1133

Query: 3342 -----HQPVYYISRALQGAEIRYTEIEKXXXXXXXXXXXXQPYFQAHPITVLTDRPLAAI 3506
                  +P+Y++S  L  ++ RY +++K              YFQ+H +TV+T  PL  I
Sbjct: 1134 HIQKVQRPIYFVSEVLADSKTRYPQVQKLLYGVLITVRKLSHYFQSHSVTVVTSFPLGDI 1193

Query: 3507 LQKPESSGRLVKWAIELGEFDIDFRPRKSMSAQ 3605
            L   E++GR+ KWA+EL   DI F+PR S+ +Q
Sbjct: 1194 LHNREANGRIAKWALELMSLDISFKPRTSIKSQ 1226


>gb|AAV25234.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1953

 Score =  581 bits (1498), Expect = e-163
 Identities = 353/1044 (33%), Positives = 533/1044 (51%), Gaps = 15/1044 (1%)
 Frame = +3

Query: 519  FTKEILEAPLPPKFKVPQIEAYDGTKDPKDHVDNFRTLMVLQGVADLIMCRAFPTTLKGI 698
            FT ++     P  FK   IE YDGT +P+  +  +   +   G  +  M    P  L   
Sbjct: 421  FTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANYLPVALADS 480

Query: 699  AKAWYNKLKPGSIASFAELSTGFVSHFIGNRRRRKPINSLFAIKQNPEEKLKSFIARFRT 878
            A++W + L  G+I S+AEL   F+++F G   R      L+ + Q P E L+ +I RF  
Sbjct: 481  ARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKPGESLRDYIRRFSE 540

Query: 879  VVLDIDDMNDKVAISAFTTGLYKSDCLKDLAMRPPETYAELLLRVDEHVTAQEIMDSARI 1058
                I D+ D V I+AFT G+   + +     +PP T   +  + +E+  A++ + +++ 
Sbjct: 541  QRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEYAKAEDAVTASK- 599

Query: 1059 EEKPQNKRPREEERSHQTSGKARPRNEATREIRRPREDYKPREEYNNYTPLNTSRETVYN 1238
                    P  + ++   +G     N   R+ R+P E           T  ++SR+   +
Sbjct: 600  -----QSGPSWKPKNTPATGGGGSNNHKDRK-RKPEELVA--------TAAHSSRQR--S 643

Query: 1239 RVYQLGILSRPPQMNPKFQRNTNKYCRYHRDNGHTTDECIHLKNDIERLIRRGRLQEFIR 1418
            RV               F +  N  C +H ++ H   EC   K   E+  +        R
Sbjct: 644  RVNT-------------FDKIMNSQCPHHPNSNHVAKECFIYKQFAEQYTKS------TR 684

Query: 1419 NNQQENKNNDRTSNDQSNPPKILGEVPVILRGTTISGESSSSRKNHARRARDEIIHAAGR 1598
             N  E ++  R  +D   P         +     I G   +      ++  +  I+A   
Sbjct: 685  KNSDEEQSTSRKKDDGDTPAGFQDHRKEL---NHIFGGPMAYESKRKQKLTEREINA--- 738

Query: 1599 VNVTHQSAQNISFTE--------EEAARLQHPHDDALVVSVNISNYLVHRVLIDTGSSVD 1754
              V   + Q + ++E        +   R+ HP    LV+   + N  + R LID GS+++
Sbjct: 739  --VQPDTPQYLRWSEIAIRFDRSDHPDRVVHPGRYPLVLDPVVRNVKLRRTLIDGGSALN 796

Query: 1755 IIFINALEKLEIQSSQLQPVTSPLVG-FSREQATPVGKITLPSTFGSSPNLKTVMTEYLV 1931
            I+F   L+ ++I  S+L+P  +P  G      ATP+G+ITLP TFG+  N +T    + V
Sbjct: 797  ILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGTRENFRTENISFEV 856

Query: 1932 MGCSSPYNAILGRPTLNRLHAVTSTYHLIVKFPTDNGVGKVLGSQKIARECNVAGLSKKA 2111
                + Y+AILGRP L +  AV    ++++K P   GV  +    K A  C         
Sbjct: 857  ADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRGVLTLRSDIKQAVTC--------- 907

Query: 2112 RPTTILQIDEDARDKLNNSEPAEETKLILLDPADPNKKTRIGARLTAEDKIKLTTFLQQE 2291
                    D+++ D     E A   + I               RL A  +  L TFLQ  
Sbjct: 908  --------DKESCDMAQTREMASAREEI---------------RLAATTESALITFLQNN 944

Query: 2292 SDVMAFSHQDMPGIDPNVITHQLSIQPGARPVKQKKRQMAMERSMAAKEEVEKLLKVGFI 2471
             D+ A+   DMPGI   VI H L ++  A+P+KQ+ R+ A +R  A KEE+ KLL  GFI
Sbjct: 945  KDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFI 1004

Query: 2472 DKTMYPEWIANVVLVKKNNGKWRMCVDYIDLNKACPKDNYPLPSIDRLVDSTAGHKILSL 2651
             + ++P+W+AN VLV+K  G+WRMCVDY DLNK+CPKD + LP ID++VDSTA  ++LS 
Sbjct: 1005 KEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTASCELLSF 1064

Query: 2652 MDAFSGYNQIMMHPSDMEKTTFITNEGLFYYRRMPFGLKNAGATFQRLVDKMFSNLIGKT 2831
            +D +SGY+QI +  SD  KT+FIT  G + Y  MPFGLKNAGAT+QR++ + FS  IG+ 
Sbjct: 1065 LDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRN 1124

Query: 2832 MEAYVDDLLVKSSEVDQHIKDLQEAFSIMRQYGMKLNPEKCVFGVSSGKFLGFMVSERGI 3011
            +EAYVDD++VK+ + D  I DL+E F+ +R + MKLNPEKC FGV SGK LGFMVS RGI
Sbjct: 1125 VEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGI 1184

Query: 3012 EANPDKIKALINLKTPQSIKDIQSLNGRIAALGRFISKSTDRMQPFLKALKDGKKFGWNE 3191
            +ANP+K+ A++N+K P + KD+Q L G +AAL RF+S+  +R  PF K LK    F W  
Sbjct: 1185 QANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGP 1244

Query: 3192 ECAKGFEKLKEYLSKAPLLGKPNANERXXXXXXXXXXXXXXXXTRENKQQ------HQPV 3353
            E  + FE  K+ L+K P+L  P+  E                   E +++       +P+
Sbjct: 1245 EAQRAFEDFKQLLTKPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPI 1304

Query: 3354 YYISRALQGAEIRYTEIEKXXXXXXXXXXXXQPYFQAHPITVLTDRPLAAILQKPESSGR 3533
            Y++S  L  ++ RY +++K              YFQ H +TV+T  PL  +L   E++GR
Sbjct: 1305 YFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSFPLGDVLHNREANGR 1364

Query: 3534 LVKWAIELGEFDIDFRPRKSMSAQ 3605
            + KWA+EL   DI F+PR S+ +Q
Sbjct: 1365 IAKWALELMSLDISFKPRTSIKSQ 1388


>emb|CAE03068.2| OSJNBa0089E12.6 [Oryza sativa Japonica Group]
          Length = 1939

 Score =  579 bits (1493), Expect = e-162
 Identities = 353/1039 (33%), Positives = 530/1039 (51%), Gaps = 10/1039 (0%)
 Frame = +3

Query: 519  FTKEILEAPLPPKFKVPQIEAYDGTKDPKDHVDNFRTLMVLQGVADLIMCRAFPTTLKGI 698
            FT ++     P  FK   IE YDGT +P+  +  +   +   G  +  M    P  L   
Sbjct: 426  FTDDLRRVDWPASFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANYLPVALADS 485

Query: 699  AKAWYNKLKPGSIASFAELSTGFVSHFIGNRRRRKPINSLFAIKQNPEEKLKSFIARFRT 878
            A++W + L  G+I S+AEL   F+++F G   R      L+ + Q   E L+ +I RF  
Sbjct: 486  ARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLREYIRRFSE 545

Query: 879  VVLDIDDMNDKVAISAFTTGLYKSDCLKDLAMRPPETYAELLLRVDEHVTAQEIMDSARI 1058
                I D+ D V I+AFT G+   + +     +PP T   +  + +E+  A++ + +++ 
Sbjct: 546  QRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEYAKAEDAVTASK- 604

Query: 1059 EEKPQNKRPREEERSHQTSGKARPRNEATREIRRPREDYKPREEYNNYTPLNTSRETVYN 1238
                    P  + ++   +G     N   R+ R+P+E           T  ++SR+   +
Sbjct: 605  -----QSGPSWKPKNTPATGGGGSNNHKDRK-RKPKELVA--------TAAHSSRQR--S 648

Query: 1239 RVYQLGILSRPPQMNPKFQRNTNKYCRYHRDNGHTTDECIHLKNDIERLIRRGRLQEFIR 1418
            RV               F +  N  C +H ++ H   EC   K   E+  +        R
Sbjct: 649  RVNT-------------FDKIMNSQCPHHPNSNHVAKECFIYKQFAEQYTKP------TR 689

Query: 1419 NNQQENKNNDRTSNDQSNPPKILGEVPVILRGTTISGESSSSRKNHARRARDEIIHAAGR 1598
             N  E ++  R  +D   P         +     I G   +      ++  +  I+A   
Sbjct: 690  KNSDEEQSTSRKKDDGDTPAGFQDHRKEL---NHIFGGPMAYESKRKQKLTEREINAVQP 746

Query: 1599 VNVTHQSAQNISFTEEEAA---RLQHPHDDALVVSVNISNYLVHRVLIDTGSSVDIIFIN 1769
                +     I+   + +    R+ HP    LV+   + N  + R LID GS+++I+F  
Sbjct: 747  DTPQYLRWSEIAIRFDRSNHPDRVVHPGRYPLVLDPVVRNVKLRRTLIDGGSALNILFAK 806

Query: 1770 ALEKLEIQSSQLQPVTSPLVG-FSREQATPVGKITLPSTFGSSPNLKTVMTEYLVMGCSS 1946
             L+ ++I  S+L+   +P  G      ATP+G+ITLP TFG+  N +T    + V    +
Sbjct: 807  TLDDMQIPRSELKSSNAPFHGVIPGLSATPLGQITLPVTFGTRENFRTENISFEVADFET 866

Query: 1947 PYNAILGRPTLNRLHAVTSTYHLIVKFPTDNGVGKVLGSQKIARECNVAGLSKKARPTTI 2126
             Y+AILGRP L +  AV    ++++K P   GV  +    K A  C              
Sbjct: 867  AYHAILGRPALAKFMAVPHYTYMMMKMPGPRGVLTLRSDIKQAVTC-------------- 912

Query: 2127 LQIDEDARDKLNNSEPAEETKLILLDPADPNKKTRIGARLTAEDKIKLTTFLQQESDVMA 2306
               D+++ D     E A   + I               RL A  +  L TFLQ   D+ A
Sbjct: 913  ---DKESCDLAQTREMASAREEI---------------RLAATTESALITFLQNNKDIFA 954

Query: 2307 FSHQDMPGIDPNVITHQLSIQPGARPVKQKKRQMAMERSMAAKEEVEKLLKVGFIDKTMY 2486
            +   DMPGI   VI H L ++  A+P+KQ+ R+ A +R  A KEE+ KLL  GFI + ++
Sbjct: 955  WKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLH 1014

Query: 2487 PEWIANVVLVKKNNGKWRMCVDYIDLNKACPKDNYPLPSIDRLVDSTAGHKILSLMDAFS 2666
            P+W+AN VLV+K  G+WRMCVDY DLNK+CPKD + LP ID++VDSTAG ++LS +D +S
Sbjct: 1015 PDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYS 1074

Query: 2667 GYNQIMMHPSDMEKTTFITNEGLFYYRRMPFGLKNAGATFQRLVDKMFSNLIGKTMEAYV 2846
            GY+QI +  SD  KT+FIT  G + Y  MPFGLKNAGAT+QR++ + FS  IG+ +EAYV
Sbjct: 1075 GYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYV 1134

Query: 2847 DDLLVKSSEVDQHIKDLQEAFSIMRQYGMKLNPEKCVFGVSSGKFLGFMVSERGIEANPD 3026
            DD++VK+ + D  I DL+E F+ +R + MKLNPEKC FGV SGK LGFMVS RGI+ANP+
Sbjct: 1135 DDVVVKTKQKDDLILDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPE 1194

Query: 3027 KIKALINLKTPQSIKDIQSLNGRIAALGRFISKSTDRMQPFLKALKDGKKFGWNEECAKG 3206
            K+ A++N+K P + KD+Q L G +AAL RF+S+  +R  PF K LK    F W  E  K 
Sbjct: 1195 KVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKA 1254

Query: 3207 FEKLKEYLSKAPLLGKPNANERXXXXXXXXXXXXXXXXTRENKQQ------HQPVYYISR 3368
            FE  K+ L+K P+L  P+  E                   E ++Q       +P+Y++S 
Sbjct: 1255 FEDFKQLLTKPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEQGHVQKVQRPIYFVSE 1314

Query: 3369 ALQGAEIRYTEIEKXXXXXXXXXXXXQPYFQAHPITVLTDRPLAAILQKPESSGRLVKWA 3548
             L  ++ RY +++K              YFQ H +TV+T  PL  IL   E++GR+ KWA
Sbjct: 1315 VLADSKTRYPQVQKLLYGILITARKLSHYFQGHSVTVVTSFPLGDILHNREANGRIAKWA 1374

Query: 3549 IELGEFDIDFRPRKSMSAQ 3605
            +EL   DI F+PR S+ +Q
Sbjct: 1375 LELMSLDISFKPRTSIKSQ 1393


>gb|AAS90646.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1991

 Score =  578 bits (1489), Expect = e-162
 Identities = 353/1044 (33%), Positives = 532/1044 (50%), Gaps = 15/1044 (1%)
 Frame = +3

Query: 519  FTKEILEAPLPPKFKVPQIEAYDGTKDPKDHVDNFRTLMVLQGVADLIMCRAFPTTLKGI 698
            FT ++     P  FK   IE YDGT +P+  +  +   +   G  +  M    P  L   
Sbjct: 426  FTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANYLPVALADS 485

Query: 699  AKAWYNKLKPGSIASFAELSTGFVSHFIGNRRRRKPINSLFAIKQNPEEKLKSFIARFRT 878
            A++W + L  G+I S+AEL   F+++F G   R      L+ + Q   E L+ +I RF  
Sbjct: 486  ARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLREYIRRFSE 545

Query: 879  VVLDIDDMNDKVAISAFTTGLYKSDCLKDLAMRPPETYAELLLRVDEHVTAQEIMDSARI 1058
                I D+ D V I+AFT G+   + +     +PP T   +  + +E+  A++ + +++ 
Sbjct: 546  QRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEYAKAEDAVTASK- 604

Query: 1059 EEKPQNKRPREEERSHQTSGKARPRNEATREIRRPREDYKPREEYNNYTPLNTSRETVYN 1238
                    P  + ++   +G     N   R+ R+P E           T  ++SR+   +
Sbjct: 605  -----QSGPSWKPKNTPATGGGGSNNHKDRK-RKPEELVA--------TAAHSSRQR--S 648

Query: 1239 RVYQLGILSRPPQMNPKFQRNTNKYCRYHRDNGHTTDECIHLKNDIERLIRRGRLQEFIR 1418
            RV               F +  N  C +H ++ H   EC   K   E+  +        R
Sbjct: 649  RVNT-------------FDKIMNSQCPHHPNSNHVAKECFIYKQFAEQYTKS------TR 689

Query: 1419 NNQQENKNNDRTSNDQSNPPKILGEVPVILRGTTISGESSSSRKNHARRARDEIIHAAGR 1598
             N  E ++  R  +D   P         +     I G   +      ++  +  I+A   
Sbjct: 690  KNSDEKQSTSRKKDDGDTPAGFQDHRKEL---NHIFGGPMAYESKRKQKLTEREINA--- 743

Query: 1599 VNVTHQSAQNISFTE--------EEAARLQHPHDDALVVSVNISNYLVHRVLIDTGSSVD 1754
              V   + Q + ++E        +   R+ HP    LV+   + N  + R LID GS+++
Sbjct: 744  --VQPDTPQYLRWSEIAIRFDRSDHPDRVVHPGRYPLVLDPVVRNVKLRRTLIDGGSALN 801

Query: 1755 IIFINALEKLEIQSSQLQPVTSPLVG-FSREQATPVGKITLPSTFGSSPNLKTVMTEYLV 1931
            I+F   L+ ++I  S+L+   +P  G      ATP+G+ITLP TFG+  N +T    + V
Sbjct: 802  ILFAKTLDDMQIPRSELKSSNAPFHGVIPGLSATPLGQITLPVTFGTRENFRTENISFEV 861

Query: 1932 MGCSSPYNAILGRPTLNRLHAVTSTYHLIVKFPTDNGVGKVLGSQKIARECNVAGLSKKA 2111
                + Y+AILGRP L +  AV    ++++K P   GV  +    K A  C         
Sbjct: 862  ADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRGVLTLRSDIKQAVTC--------- 912

Query: 2112 RPTTILQIDEDARDKLNNSEPAEETKLILLDPADPNKKTRIGARLTAEDKIKLTTFLQQE 2291
                    D+++ D     E A   + I               RL A  +  L TFLQ  
Sbjct: 913  --------DKESCDMAQTREMASAREEI---------------RLAATTESALITFLQNN 949

Query: 2292 SDVMAFSHQDMPGIDPNVITHQLSIQPGARPVKQKKRQMAMERSMAAKEEVEKLLKVGFI 2471
             D+ A+   DMPGI   VI H L ++  A+P+KQ+ R+ A +R  A KEE+ KLL  GFI
Sbjct: 950  KDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFI 1009

Query: 2472 DKTMYPEWIANVVLVKKNNGKWRMCVDYIDLNKACPKDNYPLPSIDRLVDSTAGHKILSL 2651
             + ++P+W+AN VLV+K  G+WRMCVDY DLNK+CPKD + LP ID++VDSTAG ++LS 
Sbjct: 1010 KEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSF 1069

Query: 2652 MDAFSGYNQIMMHPSDMEKTTFITNEGLFYYRRMPFGLKNAGATFQRLVDKMFSNLIGKT 2831
            +D +SGY+QI +  SD  KT+FIT  G + Y  MPFGLKNAGAT+QR++ + FS  IG+ 
Sbjct: 1070 LDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRN 1129

Query: 2832 MEAYVDDLLVKSSEVDQHIKDLQEAFSIMRQYGMKLNPEKCVFGVSSGKFLGFMVSERGI 3011
            +EAYVDD++VK+ + D  I DL+E F+ +R + MKLNPEKC FGV SGK LGFMVS RGI
Sbjct: 1130 VEAYVDDVVVKTKQKDDLILDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGI 1189

Query: 3012 EANPDKIKALINLKTPQSIKDIQSLNGRIAALGRFISKSTDRMQPFLKALKDGKKFGWNE 3191
            +ANP+K+ A++N+K P + KD+Q L G +AAL RF+S+  +R  PF K LK    F W  
Sbjct: 1190 QANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGP 1249

Query: 3192 ECAKGFEKLKEYLSKAPLLGKPNANERXXXXXXXXXXXXXXXXTRENKQQ------HQPV 3353
            E  K FE  K+ L+K P+L  P+  E                   E +++       +P+
Sbjct: 1250 EAQKAFEDFKQLLTKPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPI 1309

Query: 3354 YYISRALQGAEIRYTEIEKXXXXXXXXXXXXQPYFQAHPITVLTDRPLAAILQKPESSGR 3533
            Y++S  L  ++ RY +++K              YFQ H +TV+T  PL  +L   E++GR
Sbjct: 1310 YFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSFPLGDVLHNREANGR 1369

Query: 3534 LVKWAIELGEFDIDFRPRKSMSAQ 3605
            + KWA+EL   DI F+PR S+ +Q
Sbjct: 1370 IAKWALELMSLDISFKPRTSIKSQ 1393


>gb|AAM92798.1| putative gag-pol precursor [Oryza sativa Japonica Group]
          Length = 1986

 Score =  576 bits (1485), Expect = e-161
 Identities = 355/1046 (33%), Positives = 534/1046 (51%), Gaps = 17/1046 (1%)
 Frame = +3

Query: 519  FTKEILEAPLPPKFKVPQIEAYDGTKDPKDHVDNFRTLMVLQGVADLIMCRAFPTTLKGI 698
            FT ++     P  FK   IE YDGT +P+  +  +   +   G  +  M    P  L   
Sbjct: 421  FTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANYLPVALADS 480

Query: 699  AKAWYNKLKPGSIASFAELSTGFVSHFIGNRRRRKPINSLFAIKQNPEEKLKSFIARFRT 878
            A++W + L  G+I S+AEL   F+++F G   R      L+ + Q   E L+ +I RF  
Sbjct: 481  ARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLRDYIRRFSE 540

Query: 879  VVLDIDDMNDKVAISAFTTGLYKSDCLKDLAMRPPETYAELLLRVDEHVTAQEIMDSARI 1058
                I D+ D V I+AFT G+   + +     +PP T   +  + +E+  A++ + +++ 
Sbjct: 541  QRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEYAKAEDAVTASK- 599

Query: 1059 EEKPQNKRPREEERSHQTSGKARPRNEATREIRRPREDYKPREEYNNYTPLNTSRETVYN 1238
                    P  + ++   +G     N   R+ R+P E           T  ++SR+   +
Sbjct: 600  -----QSGPSWKPKNTPATGGGGSNNHKDRK-RKPEELVA--------TAAHSSRQR--S 643

Query: 1239 RVYQLGILSRPPQMNPKFQRNTNKYCRYHRDNGHTTDECIHLKNDIERLIRRGRLQEFIR 1418
            RV               F +  N  C +H ++ H   EC   K   E+  +        R
Sbjct: 644  RVNT-------------FDKIMNSQCPHHPNSNHVAKECFIYKQFAEQYTKS------TR 684

Query: 1419 NNQQENKNNDRTSNDQSNPPKILGEVPVI--LRGTTISGESSSSRKNHARRARDEIIHAA 1592
             N  E ++  R  +D   P         +  + G  ++ ES   +K   R      I+A 
Sbjct: 685  KNSDEEQSTSRKKDDGDTPAGFQDHRKELNHIFGGPLAYESKRKQKLTERE-----INA- 738

Query: 1593 GRVNVTHQSAQNISFTE--------EEAARLQHPHDDALVVSVNISNYLVHRVLIDTGSS 1748
                V   + Q + ++E        +   R+ HP    LV+   + N  + R LID GS+
Sbjct: 739  ----VQPDTPQYLRWSEIAIKFDRSDHPDRVVHPGRYPLVLDPVVRNVKLRRTLIDGGSA 794

Query: 1749 VDIIFINALEKLEIQSSQLQPVTSPLVG-FSREQATPVGKITLPSTFGSSPNLKTVMTEY 1925
            ++I+F   L+ ++I  S+L+   +P  G      ATP+G+ITLP TFG+  N +T    +
Sbjct: 795  LNILFAKTLDDMQIPRSELKSSNAPFHGVIPGLSATPLGQITLPVTFGTRENFRTENISF 854

Query: 1926 LVMGCSSPYNAILGRPTLNRLHAVTSTYHLIVKFPTDNGVGKVLGSQKIARECNVAGLSK 2105
             V    + Y+AILG P L +  AV    ++++K P   GV  +    K A  C       
Sbjct: 855  EVADFETAYHAILGHPALAKFMAVPHYTYMMMKMPGPRGVLTLRSDIKQAVTC------- 907

Query: 2106 KARPTTILQIDEDARDKLNNSEPAEETKLILLDPADPNKKTRIGARLTAEDKIKLTTFLQ 2285
                      D+++ D     E A   + I               RL A  +  L TFLQ
Sbjct: 908  ----------DKESCDMAQTREIASAREEI---------------RLAATTESALITFLQ 942

Query: 2286 QESDVMAFSHQDMPGIDPNVITHQLSIQPGARPVKQKKRQMAMERSMAAKEEVEKLLKVG 2465
               D+ A+   DMPGI   VI H L ++  A+P+KQ+ R+ A +R  A KEE+ KLL  G
Sbjct: 943  NNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAG 1002

Query: 2466 FIDKTMYPEWIANVVLVKKNNGKWRMCVDYIDLNKACPKDNYPLPSIDRLVDSTAGHKIL 2645
            FI + ++P+W+AN VLV+K  G+WRMCVDY DLNK+CPKD + LP ID++VDSTAG ++L
Sbjct: 1003 FIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELL 1062

Query: 2646 SLMDAFSGYNQIMMHPSDMEKTTFITNEGLFYYRRMPFGLKNAGATFQRLVDKMFSNLIG 2825
            S +D +SGY+QI +  SD  KT+FIT  G + Y  MPFGLKNAGAT+QR++ + FS  IG
Sbjct: 1063 SFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIG 1122

Query: 2826 KTMEAYVDDLLVKSSEVDQHIKDLQEAFSIMRQYGMKLNPEKCVFGVSSGKFLGFMVSER 3005
            + +EAYVDD++VK+ + D  I DL+E F+ +R + MKLNPEKC FGV SGK LGFMVS R
Sbjct: 1123 RNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHR 1182

Query: 3006 GIEANPDKIKALINLKTPQSIKDIQSLNGRIAALGRFISKSTDRMQPFLKALKDGKKFGW 3185
            GI+ANP+K+ A++N+K P + KD+Q L G +AAL RF+S+  +R  PF K LK    F W
Sbjct: 1183 GIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQW 1242

Query: 3186 NEECAKGFEKLKEYLSKAPLLGKPNANERXXXXXXXXXXXXXXXXTRENKQQ------HQ 3347
              E  K FE  K+ L+K P+L  P+  E                   E +++       +
Sbjct: 1243 GPEAQKAFEDFKQLLTKPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQR 1302

Query: 3348 PVYYISRALQGAEIRYTEIEKXXXXXXXXXXXXQPYFQAHPITVLTDRPLAAILQKPESS 3527
            P+Y++S  L  ++ RY +++K              YFQ H +TV+T  PL  +L   E++
Sbjct: 1303 PIYFVSEVLADSKARYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSFPLGDVLHNREAN 1362

Query: 3528 GRLVKWAIELGEFDIDFRPRKSMSAQ 3605
            GR+ KWA+EL   DI F+PR S+ +Q
Sbjct: 1363 GRIAKWALELMSLDISFKPRTSIKSQ 1388


>emb|CAH66795.1| H0215F08.6 [Oryza sativa Indica Group]
          Length = 1991

 Score =  576 bits (1485), Expect = e-161
 Identities = 358/1059 (33%), Positives = 542/1059 (51%), Gaps = 30/1059 (2%)
 Frame = +3

Query: 519  FTKEILEAPLPPKFKVPQIEAYDGTKDPKDHVDNFRTLMVLQGVADLIMCRAFPTTLKGI 698
            FT ++     P  FK   IE YDGT +P+  +  +   +   G     M    P  L   
Sbjct: 399  FTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDSKAMANYLPVALADS 458

Query: 699  AKAWYNKLKPGSIASFAELSTGFVSHFIGNRRRRKPINSLFAIKQNPEEKLKSFIARFRT 878
            A++W + L  G+I S+AEL   F+++F G   R      L+ + Q   E L+ +I RF  
Sbjct: 459  ARSWLHGLPRGTIGSWAELHDHFIANFQGTFERPGTQYDLYNVIQKSGESLRDYIRRFSE 518

Query: 879  VVLDIDDMNDKVAISAFTTGLYKSDCLKDLAMRPPETYAELLLRVDEHVTAQEIMDSARI 1058
                I D+ D V I+AFT G+   + +     +PP T   +  + +E+  A++ + +++ 
Sbjct: 519  QRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEYAKAEDAVTASK- 577

Query: 1059 EEKPQNKRPREEERSHQTSGKARPRNEATREIRRPREDYKPREEYNNYTPLNTSRETVYN 1238
             +   + +P+++  + +  G     N   R+ R+P E                       
Sbjct: 578  -QSGPSWKPKKDTPATEGGGS---NNHKDRK-RKPAE----------------------- 609

Query: 1239 RVYQLGILSRPPQMNPKFQRNTNKYCRYHRDNGHTTDECIHLKNDIERLIRRGRLQEFIR 1418
             V   G  SR       F +  N  C +H ++ H   +C   K   ++  +        R
Sbjct: 610  LVATAGHSSRQRSRVNTFDKIMNSQCPHHPNSNHVAKDCFIYKQFADQYTKT------TR 663

Query: 1419 NNQQENKNNDRTSNDQSNPPKILGEVPVI--LRGTTISGESSSSRKNHARRARDEIIHAA 1592
             N  E ++  R  +D   P         +  + G  ++ ES   +K   R      I+A 
Sbjct: 664  KNSDEEQSTSRKKDDGDAPAGFQDHRKELNHIFGGPLAYESKRKQKLTERE-----INA- 717

Query: 1593 GRVNVTHQSAQNISFTE--------EEAARLQHPHDDALVVSVNISNYLVHRVLIDTGSS 1748
                V   + Q + ++E        +   R+ HP    LV+   + N  + R LID GS+
Sbjct: 718  ----VQPDTPQYLRWSEIAIKFDRSDHPDRVVHPGRYPLVLDPVVRNVKLRRTLIDGGSA 773

Query: 1749 VDIIFINALEKLEIQSSQLQPVTSPLVG-FSREQATPVGKITLPSTFGSSPNLKTVMTEY 1925
            ++I+F   L+ ++I  S+L+P  +P  G      ATP+G+ITLP TFG+  N +T    +
Sbjct: 774  LNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGTRENFRTENISF 833

Query: 1926 LVMGCSSPYNAILGRPTLNRLHAVTSTYHLIVKFPTDNGVGKVLGSQKIA-----RECNV 2090
             V    + Y+AILGRP L +  AV    ++++K P   GV  +    K A       C++
Sbjct: 834  EVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRGVLSLRSDIKQAVTCDKESCDM 893

Query: 2091 AGLSKKARPTTILQI--------DEDARDKLNNSEPAEETKLILLDPADPNKKTRIGARL 2246
            A   + A     +++        +  A     + E   +TK I LDP+DP K        
Sbjct: 894  AQTREMASAREDIRLAAATASEGEMPATKTSKSGESEAKTKKIPLDPSDPTK-------- 945

Query: 2247 TAEDKIKLTTFLQQESDVMAFSHQDMPGIDPNVITHQLSIQPGARPVKQKKRQMAMERSM 2426
            TA +K           D+ A+   DMPGI   VI H L ++  A+P+KQ+ R+ A +R  
Sbjct: 946  TANNK-----------DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKD 994

Query: 2427 AAKEEVEKLLKVGFIDKTMYPEWIANVVLVKKNNGKWRMCVDYIDLNKACPKDNYPLPSI 2606
            A KEE+ KLL  GFI + ++P+W+AN VLV+K  G+WRMCVDY DLNK+CPKD + LP I
Sbjct: 995  AIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRI 1054

Query: 2607 DRLVDSTAGHKILSLMDAFSGYNQIMMHPSDMEKTTFITNEGLFYYRRMPFGLKNAGATF 2786
            D++VDSTAG ++LS +D +SGY+QI +  SD  KT FIT  G + Y  MPFGLKNAGAT+
Sbjct: 1055 DQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTPFITPFGAYCYITMPFGLKNAGATY 1114

Query: 2787 QRLVDKMFSNLIGKTMEAYVDDLLVKSSEVDQHIKDLQEAFSIMRQYGMKLNPEKCVFGV 2966
            QR++ + FS  IG+ +EAYVDD++VK+ + D  I DL+E F+ +R + MKLNPEKC FGV
Sbjct: 1115 QRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGV 1174

Query: 2967 SSGKFLGFMVSERGIEANPDKIKALINLKTPQSIKDIQSLNGRIAALGRFISKSTDRMQP 3146
             SGK LGFMVS RGI+ANP+KI A++N+K P + KD+Q L G +AAL RF+S+  +R  P
Sbjct: 1175 PSGKLLGFMVSHRGIQANPEKITAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMP 1234

Query: 3147 FLKALKDGKKFGWNEECAKGFEKLKEYLSKAPLLGKPNANERXXXXXXXXXXXXXXXXTR 3326
            F K LK    F W  E  K FE  K+ L++ P+L  P+  E                   
Sbjct: 1235 FFKLLKKTDHFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVV 1294

Query: 3327 ENKQQ------HQPVYYISRALQGAEIRYTEIEKXXXXXXXXXXXXQPYFQAHPITVLTD 3488
            E +++       +P+Y++S  L  ++ RY +++K              YFQ H +TV+T 
Sbjct: 1295 EREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTS 1354

Query: 3489 RPLAAILQKPESSGRLVKWAIELGEFDIDFRPRKSMSAQ 3605
             PL  IL   E++GR+ KWA+EL   DI F+PR S+ +Q
Sbjct: 1355 FPLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQ 1393


>emb|CAH66866.1| H0307D04.11 [Oryza sativa Indica Group]
          Length = 2017

 Score =  575 bits (1482), Expect = e-161
 Identities = 356/1059 (33%), Positives = 541/1059 (51%), Gaps = 30/1059 (2%)
 Frame = +3

Query: 519  FTKEILEAPLPPKFKVPQIEAYDGTKDPKDHVDNFRTLMVLQGVADLIMCRAFPTTLKGI 698
            FT ++     P  FK   IE YDGT +P+  +  +   +   G     M    P  L   
Sbjct: 425  FTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDSKAMANYLPVALADS 484

Query: 699  AKAWYNKLKPGSIASFAELSTGFVSHFIGNRRRRKPINSLFAIKQNPEEKLKSFIARFRT 878
            A++W + L  G+I S+AEL   F+++F G   R      L+ + Q   E L+ +I RF  
Sbjct: 485  ARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLRDYIRRFSE 544

Query: 879  VVLDIDDMNDKVAISAFTTGLYKSDCLKDLAMRPPETYAELLLRVDEHVTAQEIMDSARI 1058
                I D+ D V I+AFT G+   + +     +PP T   +  + +E+  A++ + +++ 
Sbjct: 545  QRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEYAKAEDAVTASK- 603

Query: 1059 EEKPQNKRPREEERSHQTSGKARPRNEATREIRRPREDYKPREEYNNYTPLNTSRETVYN 1238
                Q+    + ++    +G     N   R+ R+P E                       
Sbjct: 604  ----QSGPSWKPKKDTPATGGGGSNNHKDRK-RKPAE----------------------- 635

Query: 1239 RVYQLGILSRPPQMNPKFQRNTNKYCRYHRDNGHTTDECIHLKNDIERLIRRGRLQEFIR 1418
             V   G  SR       F +  N  C +H ++ H   +C   K   ++  +        R
Sbjct: 636  LVATAGQSSRQRSRVNTFDKIMNSQCPHHPNSNHVAKDCFIYKQFADQYTKT------TR 689

Query: 1419 NNQQENKNNDRTSNDQSNPPKILGEVPVI--LRGTTISGESSSSRKNHARRARDEIIHAA 1592
             N  E ++  R  +D   P         +  + G  ++ ES   +K   R      I+A 
Sbjct: 690  KNSDEEQSTSRKKDDGDAPAGFQDHRKELNHIFGGPLAYESKRKQKLTERE-----INA- 743

Query: 1593 GRVNVTHQSAQNISFTE--------EEAARLQHPHDDALVVSVNISNYLVHRVLIDTGSS 1748
                V   ++Q + ++E        +   R+ HP    LV+   + N  + R LID GS+
Sbjct: 744  ----VQPDTSQYLRWSEIAIKFDRSDHPDRVVHPGRYPLVLDPVVRNVKLRRTLIDGGSA 799

Query: 1749 VDIIFINALEKLEIQSSQLQPVTSPLVG-FSREQATPVGKITLPSTFGSSPNLKTVMTEY 1925
            ++I+F   L+ ++I  S+L+P  +P  G      ATP+G+ITLP TFG+  N +T    +
Sbjct: 800  LNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGTRENFRTENISF 859

Query: 1926 LVMGCSSPYNAILGRPTLNRLHAVTSTYHLIVKFPTDNGVGKVLGSQKIA-----RECNV 2090
             V    + Y+AILGRP L +  AV    ++++K P   GV  +    K A       C++
Sbjct: 860  EVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRGVLSLRSDIKQAVTCDKESCDM 919

Query: 2091 AGLSKKARPTTILQI--------DEDARDKLNNSEPAEETKLILLDPADPNKKTRIGARL 2246
            A + + A     +++        +  A     + E   +TK I LDP+DP K        
Sbjct: 920  AQIREMASAREDIRLAAATASEGEIPATKTSKSGESEAKTKKIPLDPSDPTK-------- 971

Query: 2247 TAEDKIKLTTFLQQESDVMAFSHQDMPGIDPNVITHQLSIQPGARPVKQKKRQMAMERSM 2426
            TA +K           D+ A+   DMPGI   VI H L ++  A+P+KQ+ R+ A +R  
Sbjct: 972  TANNK-----------DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKD 1020

Query: 2427 AAKEEVEKLLKVGFIDKTMYPEWIANVVLVKKNNGKWRMCVDYIDLNKACPKDNYPLPSI 2606
            A KEE+ KLL  GFI + ++P+W+AN VLV+K  G+WRMCVDY DLNK+CPKD + LP I
Sbjct: 1021 AIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRI 1080

Query: 2607 DRLVDSTAGHKILSLMDAFSGYNQIMMHPSDMEKTTFITNEGLFYYRRMPFGLKNAGATF 2786
            D++VDSTAG ++LS +D +SGY+QI +  SD  KT+FIT  G + Y  MPFGLKNAGAT+
Sbjct: 1081 DQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYITMPFGLKNAGATY 1140

Query: 2787 QRLVDKMFSNLIGKTMEAYVDDLLVKSSEVDQHIKDLQEAFSIMRQYGMKLNPEKCVFGV 2966
            QR++ + FS  IG+ +EAYVDD++VK+ + D  I DL+E F+ +R + MKLNPEKC FGV
Sbjct: 1141 QRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGV 1200

Query: 2967 SSGKFLGFMVSERGIEANPDKIKALINLKTPQSIKDIQSLNGRIAALGRFISKSTDRMQP 3146
             SGK LGFMVS RGI+ANP+K+ A++N+K P + KD+Q L G +AAL RF+S+  +R  P
Sbjct: 1201 PSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMP 1260

Query: 3147 FLKALKDGKKFGWNEECAKGFEKLKEYLSKAPLLGKPNANERXXXXXXXXXXXXXXXXTR 3326
            F K LK    F W  E  K FE  K+ L++ P+L  P+  E                   
Sbjct: 1261 FFKLLKKTDDFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVV 1320

Query: 3327 ENKQQ------HQPVYYISRALQGAEIRYTEIEKXXXXXXXXXXXXQPYFQAHPITVLTD 3488
            E +++       +P+Y++S  L  ++  Y +++K              YFQ H +TV+T 
Sbjct: 1321 EREEEGHVQKVQRPIYFVSEVLADSKTWYPQVQKLLYGILITTRKLSHYFQGHSVTVVTS 1380

Query: 3489 RPLAAILQKPESSGRLVKWAIELGEFDIDFRPRKSMSAQ 3605
             PL  IL   E++GR+ KWA+EL   DI F+PR S+ +Q
Sbjct: 1381 FPLGDILHNREANGRIAKWALELMSLDISFKPRTSIKSQ 1419


>gb|AAL58229.1|AC084762_3 putative gag-pol precursor [Oryza sativa Japonica Group]
          Length = 2026

 Score =  574 bits (1479), Expect = e-160
 Identities = 358/1059 (33%), Positives = 545/1059 (51%), Gaps = 30/1059 (2%)
 Frame = +3

Query: 519  FTKEILEAPLPPKFKVPQIEAYDGTKDPKDHVDNFRTLMVLQGVADLIMCRAFPTTLKGI 698
            FT ++     P  FK   IE YDGT +P+  +  +   +   G     M    P  L   
Sbjct: 425  FTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDSKAMANYLPVALADS 484

Query: 699  AKAWYNKLKPGSIASFAELSTGFVSHFIGNRRRRKPINSLFAIKQNPEEKLKSFIARFRT 878
            A++W + L  G+I S+AEL   F+++F G   R      L+ + Q   E L+ +I RF  
Sbjct: 485  ARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQFDLYNVVQKSGESLRDYIRRFSE 544

Query: 879  VVLDIDDMNDKVAISAFTTGLYKSDCLKDLAMRPPETYAELLLRVDEHVTAQEIMDSARI 1058
                I D+ D V I+AFT G+   + +     +PP T   +  + +E+  A++ + +++ 
Sbjct: 545  QRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMFEKANEYAKAEDAVTASK- 603

Query: 1059 EEKPQNKRPREEERSHQTSGKARPRNEATREIRRPREDYKPREEYNNYTPLNTSRETVYN 1238
                Q+    + ++    +G     N   R+ R+P E           T +++SR+   +
Sbjct: 604  ----QSGPSWKPKKDTPATGGGGSNNHKDRK-RKPEELVA--------TAIHSSRQR--S 648

Query: 1239 RVYQLGILSRPPQMNPKFQRNTNKYCRYHRDNGHTTDECIHLKNDIERLIRRGRLQEFIR 1418
            RV               F +  N  C +H ++ H   +C   K   E+  +        R
Sbjct: 649  RVNT-------------FDKIMNSQCPHHPNSNHVAKDCFVYKQFAEQYTKT------TR 689

Query: 1419 NNQQENKNNDRTSNDQSNPPKILGEVPVI--LRGTTISGESSSSRKNHARRARDEIIHAA 1592
             N  E ++  R  +D   P         +  + G  ++ ES   +K   R      I+A 
Sbjct: 690  KNSDEEQSTSRKKDDGDTPVGFQDHRKELNHIFGGPLAYESKRKQKLTERE-----INA- 743

Query: 1593 GRVNVTHQSAQNISFTE--------EEAARLQHPHDDALVVSVNISNYLVHRVLIDTGSS 1748
                V   + Q + ++E        +   R+ HP    LV+   + N  + R LID GS+
Sbjct: 744  ----VQPDTPQYLRWSEIAIKFDRSDHPDRVVHPGRYPLVLDPVVRNVKLRRTLIDGGSA 799

Query: 1749 VDIIFINALEKLEIQSSQLQPVTSPLVG-FSREQATPVGKITLPSTFGSSPNLKTVMTEY 1925
            ++I+F   L+ ++I  S+L+P  +P  G      ATP+G+ITLP TFG+  N +T    +
Sbjct: 800  LNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGTRENFRTENISF 859

Query: 1926 LVMGCSSPYNAILGRPTLNRLHAVTSTYHLIVKFPTDNGVGKVLGSQKIA-----RECNV 2090
             V    + Y+AILGRP L +  AV    ++++K P   GV  +    K A       C++
Sbjct: 860  EVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRGVLSLRSDIKQAVTCDKESCDM 919

Query: 2091 AGLSKKARPTTILQI--------DEDARDKLNNSEPAEETKLILLDPADPNKKTRIGARL 2246
            A   + A     +++        +  A     + E   +TK I LDP++P K        
Sbjct: 920  AQTREMASAREDIRLAAATASEGEVPATKTSKSGESEAKTKKIPLDPSNPTK-------- 971

Query: 2247 TAEDKIKLTTFLQQESDVMAFSHQDMPGIDPNVITHQLSIQPGARPVKQKKRQMAMERSM 2426
            TA +K           D+ A+   DMPGI   VI H L ++  A+P+KQ+ R+ A +R  
Sbjct: 972  TANNK-----------DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKD 1020

Query: 2427 AAKEEVEKLLKVGFIDKTMYPEWIANVVLVKKNNGKWRMCVDYIDLNKACPKDNYPLPSI 2606
            A KEE+ KLL  GFI +  +P+W+AN VLV+K  G+WRMCVDY DLNK+CPKD + LP I
Sbjct: 1021 AIKEELTKLLAAGFIKEVHHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRI 1080

Query: 2607 DRLVDSTAGHKILSLMDAFSGYNQIMMHPSDMEKTTFITNEGLFYYRRMPFGLKNAGATF 2786
            D++VDSTAG ++LS +D +SGY+QI +  SD  KT+FIT  G + Y  MPFGLKNAGAT+
Sbjct: 1081 DQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATY 1140

Query: 2787 QRLVDKMFSNLIGKTMEAYVDDLLVKSSEVDQHIKDLQEAFSIMRQYGMKLNPEKCVFGV 2966
            QR++ + FS  IG+ +EAYVDD++VK+ + D  I DL+E F+ +R + MKLNPEKC FGV
Sbjct: 1141 QRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGV 1200

Query: 2967 SSGKFLGFMVSERGIEANPDKIKALINLKTPQSIKDIQSLNGRIAALGRFISKSTDRMQP 3146
             SGK LGFMVS RGI+ANP+K+ A++N+K P + KD+Q L G +AAL RF+S+  +R  P
Sbjct: 1201 PSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMP 1260

Query: 3147 FLKALKDGKKFGWNEECAKGFEKLKEYLSKAPLLGKPNANERXXXXXXXXXXXXXXXXTR 3326
            F K LK    F W  E  K FE  K+ L++ P+L  P+  E                   
Sbjct: 1261 FFKLLKKTDDFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVV 1320

Query: 3327 ENKQQ------HQPVYYISRALQGAEIRYTEIEKXXXXXXXXXXXXQPYFQAHPITVLTD 3488
            E +++       +P+Y++S  L  ++ RY +++K              YFQ H +TV+T 
Sbjct: 1321 EREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTS 1380

Query: 3489 RPLAAILQKPESSGRLVKWAIELGEFDIDFRPRKSMSAQ 3605
             PL  IL   E++GR+ KWA+EL   DI F+PR S+ +Q
Sbjct: 1381 FPLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQ 1419


>gb|ABA93599.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1912

 Score =  573 bits (1477), Expect = e-160
 Identities = 360/1060 (33%), Positives = 545/1060 (51%), Gaps = 31/1060 (2%)
 Frame = +3

Query: 519  FTKEILEAPLPPKFKVPQIEAYDGTKDPKDHVDNFRTLMVLQGVADLIMCRAFPTTLKGI 698
            FT ++     P  FK   IE YDGT +P+  +  +   +   G     M    P  L   
Sbjct: 421  FTDDLRRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDSKAMANYLPVALADS 480

Query: 699  AKAWYNKLKPGSIASFAELSTGFVSHFIGNRRRRKPINSLFAIKQNPEEKLKSFIARFRT 878
            A++W + L  G+I S+AEL   F+++F G   R      L+ + Q   E L+ +I RF  
Sbjct: 481  ARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQYDLYNVIQKSGESLRDYIRRFSE 540

Query: 879  VVLDIDDMNDKVAISAFTTGLYKSDCLKDLAMRPPETYAELLLRVDEHVTAQEIMDSARI 1058
                I D+ D V I+AFT G+   + +     +PP T   +L + +E+  A++ + +++ 
Sbjct: 541  QRNKISDITDDVIIAAFTKGIRHEELVGKFGRKPPRTVKLMLEKANEYAKAEDAVTASK- 599

Query: 1059 EEKPQNKRPREEERSHQTSGKARPRNEATREIRRPREDYKPREEYNNYTPLNTSRETVYN 1238
                Q+    + ++    +G  R  N   R+ R+P E           T  ++SR+   +
Sbjct: 600  ----QSGPSWKPKKDTPATGGGRSNNHKDRK-RKPAELVA--------TASHSSRQR--S 644

Query: 1239 RVYQLGILSRPPQMNPKFQRNTNKYCRYHRDNGHTTDECIHLKNDIERLIRRGRLQEFIR 1418
            RV               F +  N  C +H ++ H   +C   K   ++  +  R      
Sbjct: 645  RVNT-------------FDKIMNSQCPHHPNSNHVAKDCFVYKQFADQYTKTAR------ 685

Query: 1419 NNQQENKNNDRTSNDQSNPPKILGEVPVI--LRGTTISGESSSSRKNHARRARDEIIHAA 1592
             N  + ++  R  +D   P         +  + G  ++ ES   +K   R      I+A 
Sbjct: 686  KNSDKEQSTSRKKDDGDTPAGFQDHRKELNHIFGGPLAYESKRKQKLTERE-----INA- 739

Query: 1593 GRVNVTHQSAQNISFTE--------EEAARLQHPHDDALVVSVNISNYLVHRVLIDTGSS 1748
                V   + Q + ++E        +   R+ HP    LV+   + N  + R LID GS+
Sbjct: 740  ----VQPDTPQYLRWSEIAIKFDRSDHPDRVVHPGRYPLVLDPVVRNVKLRRTLIDGGSA 795

Query: 1749 VDIIFINALEKLEIQSSQLQPVTSPLVG-FSREQATPVGKITLPSTFGSSPNLKTVMTEY 1925
            ++I+F   L+ ++I  S+L+P  +P  G      ATP+G+ITLP TFG+  N +T    +
Sbjct: 796  LNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGTRENFRTENISF 855

Query: 1926 LVMGCSSPYNAILGRPTLNRLHAVTSTYHLIVKFPTDNGVGKVLGSQKIARECNVAGLSK 2105
             V    + Y+AILG P L +  AV    ++++K P   GV  +    K A  C+      
Sbjct: 856  EVADFETAYHAILGHPALAKFMAVPHYTYMMMKMPGPRGVLSLRSDIKQAVTCDKESCDM 915

Query: 2106 KARPTTILQIDEDAR-------------DKLNNSEPAE-ETKLILLDPADPNKKTRIGAR 2243
             A+   +    ED R              K + S  +E +TK I LDP+DP K       
Sbjct: 916  -AQTREMASAREDIRLAAATASEGEIPATKTSKSGESEAKTKKIPLDPSDPTK------- 967

Query: 2244 LTAEDKIKLTTFLQQESDVMAFSHQDMPGIDPNVITHQLSIQPGARPVKQKKRQMAMERS 2423
             TA +K           D+ A+   DMPGI   VI H L ++  A+P+KQ+ R+ A +R 
Sbjct: 968  -TANNK-----------DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRK 1015

Query: 2424 MAAKEEVEKLLKVGFIDKTMYPEWIANVVLVKKNNGKWRMCVDYIDLNKACPKDNYPLPS 2603
             A KEE+ KLL  GFI + ++P+W+AN VLV+K  G+WRMCVDY DLNK+CPKD + LP 
Sbjct: 1016 DAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPR 1075

Query: 2604 IDRLVDSTAGHKILSLMDAFSGYNQIMMHPSDMEKTTFITNEGLFYYRRMPFGLKNAGAT 2783
            ID++VDSTAG ++LS +D +SGY+QI +  SD  KT+FI   G + Y  MPFGLKNAGAT
Sbjct: 1076 IDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFIMPFGAYCYVTMPFGLKNAGAT 1135

Query: 2784 FQRLVDKMFSNLIGKTMEAYVDDLLVKSSEVDQHIKDLQEAFSIMRQYGMKLNPEKCVFG 2963
            +QR++ + FS  IG+ +EAYVDD++VK+ + D  I DL+E F+ +R + MKLNPEKC FG
Sbjct: 1136 YQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFG 1195

Query: 2964 VSSGKFLGFMVSERGIEANPDKIKALINLKTPQSIKDIQSLNGRIAALGRFISKSTDRMQ 3143
            V SGK LGFMVS RGI+ANP+K+ A++N+K P + KD+Q L G +AAL RF+S+  +R  
Sbjct: 1196 VPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGM 1255

Query: 3144 PFLKALKDGKKFGWNEECAKGFEKLKEYLSKAPLLGKPNANERXXXXXXXXXXXXXXXXT 3323
            PF K LK    F W  E  K FE  K+ L++ P+L  P+  E                  
Sbjct: 1256 PFFKLLKKTDDFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLV 1315

Query: 3324 RENKQQ------HQPVYYISRALQGAEIRYTEIEKXXXXXXXXXXXXQPYFQAHPITVLT 3485
             E +++       +P+Y++S  L  ++ RY +++K              YFQ H +TV+T
Sbjct: 1316 VEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVT 1375

Query: 3486 DRPLAAILQKPESSGRLVKWAIELGEFDIDFRPRKSMSAQ 3605
              PL  IL   E++GR+ KWA+EL   DI F+PR S+ +Q
Sbjct: 1376 SFPLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQ 1415