BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Stemona21_contig00017738
         (1752 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza s...   317   e-144
emb|CAD40924.3| OSJNBa0033G16.12 [Oryza sativa Japonica Group]        317   e-143
gb|ABA91445.2| retrotransposon protein, putative, Ty1-copia subc...   314   e-143
gb|AAP53927.1| retrotransposon protein, putative, Ty1-copia subc...   315   e-143
gb|ABF97537.1| retrotransposon protein, putative, Ty1-copia subc...   314   e-143
gb|AAR87214.1| retrotransposon protein, putative, Ty1-copia sub-...   314   e-143
gb|ABA91250.1| retrotransposon protein, putative, Ty1-copia subc...   315   e-143
emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]         313   e-143
emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]         313   e-143
gb|AAT93940.1| putative polyprotein [Oryza sativa Japonica Group]     314   e-143
gb|AAP54573.2| retrotransposon protein, putative, Ty1-copia subc...   314   e-143
emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa Japonica Group]         314   e-143
gb|AAK84454.1|AC087192_15 putative polyprotein [Oryza sativa Jap...   314   e-143
gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subc...   314   e-143
gb|ABF98943.1| retrotransposon protein, putative, unclassified, ...   314   e-143
gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group]     314   e-143
gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-...   314   e-143
emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]         315   e-143
gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group]     314   e-143
gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japoni...   314   e-143

>gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza sativa Japonica
            Group]
          Length = 1911

 Score =  317 bits (812), Expect(4) = e-144
 Identities = 163/295 (55%), Positives = 209/295 (70%), Gaps = 5/295 (1%)
 Frame = -1

Query: 1020 TYAPVARITTIRIVLALASIHKLLVHQIDMKR-----DLEEEIYMEQPEGFFVLRQENKV 856
            TY+PVAR+TTIR++L+LA+ H LLVHQ+D+K      +L+EEIYM+QP+GF +  QE KV
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKV 933

Query: 855  CKLVKSLYGLKQAPKQCHEKFDQVIIF*GFQINESDKCLYCKMVGNKCVILCLYVXXXXX 676
            CKL+KSLYGLKQAPKQ HEKFD+ + F GF +NE+DKC+Y +  G + VILCLYV     
Sbjct: 934  CKLLKSLYGLKQAPKQWHEKFDKTLTFAGFAVNEADKCVYYRHGGGEGVILCLYVDDILI 993

Query: 675  XXXXXXXXXXIKTFISHHFDMKYLGEVDVILGVKLSRTHKGISLSQSHYIEKILKKFGYL 496
                      +K+F+S +FDMK LG  DVIL +KL R   GI+L QSHY+EKIL +FGY+
Sbjct: 994  FGTNIEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYI 1053

Query: 495  DRSIVSTP*DPSVHLKKNLGDPVSQEQYAHIIGILMY*SNRTCPDISYTVSRLSRYISNL 316
            D     TP DPS+ L+KN     +Q +Y+ IIG LMY ++ T PDIS+ VS+LSR+ SN 
Sbjct: 1054 DSKPSPTPYDPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNP 1113

Query: 315  PRNHWVALERVFRYLKGIISYSLCYGDYPVVLEGYSDDNWITDSLGLKSTSGYFY 151
              +HW ALERV RYLKG +   L Y  YP VLEGYSD NWI+D   +K+TSGY +
Sbjct: 1114 GDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVF 1168



 Score =  149 bits (376), Expect(4) = e-144
 Identities = 81/208 (38%), Positives = 118/208 (56%), Gaps = 14/208 (6%)
 Frame = -2

Query: 1607 KIGYMAIDTIFVG*YFDSNTNRFLVINSDFSEIANETIIESRDATLFENAFPFKNCVPKA 1428
            K+G   +D +F+G    S   RFL++ S+  ++   TI+ESRDAT FE+ FP K+     
Sbjct: 674  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD----- 728

Query: 1427 FSYDLSYLHLYHPSYSVYASVEP--------------DLLFEPRRSKRARVERNLGEEFV 1290
                 ++     PS  + +S+ P              D+   PRRSKR R  ++ G++F 
Sbjct: 729  -----THSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 1289 TFFIEDAPSSYHDAINSPDTPLWKEAINSKIESIIGNNTWILTDLPPGNKTFGCK*IFKK 1110
             + ++D P S  +A  SPD   WKEA+ S+++SII N TW +T+ P G K  GCK +FKK
Sbjct: 784  VYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKK 843

Query: 1109 KLRTDVTVETYKARFVAQSFRQKVGIDY 1026
            KLR D T+E YKAR VA+ + QK G D+
Sbjct: 844  KLRPDGTIEKYKARLVAKGYTQKEGEDF 871



 Score = 63.2 bits (152), Expect(4) = e-144
 Identities = 30/47 (63%), Positives = 36/47 (76%)
 Frame = -2

Query: 155  FILGGDAVSWQSAKQTIIARSTMEAELVSLDTSCSGAEWLRSFLPNI 15
            F LGG AVSW+S KQTI+ RSTMEAEL +LDT+   AEWLR  L ++
Sbjct: 1168 FTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDL 1214



 Score = 55.1 bits (131), Expect(4) = e-144
 Identities = 24/41 (58%), Positives = 30/41 (73%)
 Frame = -3

Query: 1747 YILNRVSMSDRKKTTYELWKGRPPSLA*LRVWGCLVKVLVP 1625
            ++LNRV   ++ KT YE+W GR PSL+ LR WGCL KV VP
Sbjct: 628  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVP 668


>emb|CAD40924.3| OSJNBa0033G16.12 [Oryza sativa Japonica Group]
          Length = 1320

 Score =  317 bits (812), Expect(4) = e-143
 Identities = 164/295 (55%), Positives = 209/295 (70%), Gaps = 5/295 (1%)
 Frame = -1

Query: 1020 TYAPVARITTIRIVLALASIHKLLVHQIDMKR-----DLEEEIYMEQPEGFFVLRQENKV 856
            TY+PVAR+TTIR++L+LA+ H LLVHQ+D+K      +L+EEIYM+QP+GF V  QE KV
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 933

Query: 855  CKLVKSLYGLKQAPKQCHEKFDQVIIF*GFQINESDKCLYCKMVGNKCVILCLYVXXXXX 676
            CKL+KSLYGLKQAPKQ HEKFD+ +   GF +NE+DKC+Y +  G + VILCLYV     
Sbjct: 934  CKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILI 993

Query: 675  XXXXXXXXXXIKTFISHHFDMKYLGEVDVILGVKLSRTHKGISLSQSHYIEKILKKFGYL 496
                      +K+F+S +FDMKYLG  DVIL +KL R   GI+L QSHY+EKIL +FGY+
Sbjct: 994  FGTNLEVINEVKSFLSQNFDMKYLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYI 1053

Query: 495  DRSIVSTP*DPSVHLKKNLGDPVSQEQYAHIIGILMY*SNRTCPDISYTVSRLSRYISNL 316
            D     TP DPS+ L+KN     +Q +Y+ IIG LMY ++ T PDIS+ VS+LSR+ SN 
Sbjct: 1054 DSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNP 1113

Query: 315  PRNHWVALERVFRYLKGIISYSLCYGDYPVVLEGYSDDNWITDSLGLKSTSGYFY 151
              +HW ALERV RYLKG +   L Y  YP VLEGYSD NWI+D   +K+TSGY +
Sbjct: 1114 GDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDFNWISDVDEIKATSGYVF 1168



 Score =  147 bits (372), Expect(4) = e-143
 Identities = 80/208 (38%), Positives = 118/208 (56%), Gaps = 14/208 (6%)
 Frame = -2

Query: 1607 KIGYMAIDTIFVG*YFDSNTNRFLVINSDFSEIANETIIESRDATLFENAFPFKNCVPKA 1428
            K+G   +D +F+G    S   RFL++ S+  ++   TI+ES DAT FE+ FP K+     
Sbjct: 674  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESHDATFFESFFPMKD----- 728

Query: 1427 FSYDLSYLHLYHPSYSVYASVEP--------------DLLFEPRRSKRARVERNLGEEFV 1290
                 ++     PS  + +S+ P              D+   PRRSKR R  ++ G++F 
Sbjct: 729  -----THSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 1289 TFFIEDAPSSYHDAINSPDTPLWKEAINSKIESIIGNNTWILTDLPPGNKTFGCK*IFKK 1110
             + ++D P S  +A  SPD   WKEA++S+++SII N TW +T+ P G K  GCK +FKK
Sbjct: 784  VYLVDDTPKSISEAYASPDADYWKEAVHSEMDSIIANGTWEVTERPYGCKPVGCKWVFKK 843

Query: 1109 KLRTDVTVETYKARFVAQSFRQKVGIDY 1026
            KLR D T+E YKAR VA+ + QK G D+
Sbjct: 844  KLRPDDTIEKYKARLVAKGYTQKEGEDF 871



 Score = 63.2 bits (152), Expect(4) = e-143
 Identities = 30/47 (63%), Positives = 36/47 (76%)
 Frame = -2

Query: 155  FILGGDAVSWQSAKQTIIARSTMEAELVSLDTSCSGAEWLRSFLPNI 15
            F LGG AVSW+S KQTI+ RSTMEAEL +LDT+   AEWLR  L ++
Sbjct: 1168 FTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDL 1214



 Score = 55.1 bits (131), Expect(4) = e-143
 Identities = 24/41 (58%), Positives = 30/41 (73%)
 Frame = -3

Query: 1747 YILNRVSMSDRKKTTYELWKGRPPSLA*LRVWGCLVKVLVP 1625
            ++LNRV   ++ KT YE+W GR PSL+ LR WGCL KV VP
Sbjct: 628  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVP 668


>gb|ABA91445.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  314 bits (805), Expect(4) = e-143
 Identities = 163/295 (55%), Positives = 208/295 (70%), Gaps = 5/295 (1%)
 Frame = -1

Query: 1020 TYAPVARITTIRIVLALASIHKLLVHQIDMKR-----DLEEEIYMEQPEGFFVLRQENKV 856
            TY+PVAR+TTIR++L+LA+ H LLVHQ+D+K      +L+EEIYM+QP+GF V  QE KV
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 933

Query: 855  CKLVKSLYGLKQAPKQCHEKFDQVIIF*GFQINESDKCLYCKMVGNKCVILCLYVXXXXX 676
            CKL+KSLYGLKQAPKQ HEKFD+ +   GF +NE+DKC+Y +  G + VILCLYV     
Sbjct: 934  CKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILI 993

Query: 675  XXXXXXXXXXIKTFISHHFDMKYLGEVDVILGVKLSRTHKGISLSQSHYIEKILKKFGYL 496
                      +K+F+S +FDMK LG  DVIL +KL R   GI+L QSHY+EKIL +FGY+
Sbjct: 994  FGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYI 1053

Query: 495  DRSIVSTP*DPSVHLKKNLGDPVSQEQYAHIIGILMY*SNRTCPDISYTVSRLSRYISNL 316
            D     TP DPS+ L+KN     +Q +Y+ IIG LMY ++ T PDIS+ VS+LSR+ SN 
Sbjct: 1054 DSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNP 1113

Query: 315  PRNHWVALERVFRYLKGIISYSLCYGDYPVVLEGYSDDNWITDSLGLKSTSGYFY 151
              +HW ALERV RYLKG +   L Y  YP VLEGYSD NWI+D   +K+TSGY +
Sbjct: 1114 GDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVF 1168



 Score =  149 bits (375), Expect(4) = e-143
 Identities = 80/204 (39%), Positives = 116/204 (56%), Gaps = 10/204 (4%)
 Frame = -2

Query: 1607 KIGYMAIDTIFVG*YFDSNTNRFLVINSDFSEIANETIIESRDATLFENAFPFKNC---- 1440
            K+G   +D +F+G    S   RFL++ S+  ++   TI+ESRDAT FE+ FP K+     
Sbjct: 674  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTNSGS 733

Query: 1439 ------VPKAFSYDLSYLHLYHPSYSVYASVEPDLLFEPRRSKRARVERNLGEEFVTFFI 1278
                  +P + +      H +          E D+   PRRSKR R  ++ G++F  + +
Sbjct: 734  NQPSEIIPSSITPPEQTEHTHE------LVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLV 787

Query: 1277 EDAPSSYHDAINSPDTPLWKEAINSKIESIIGNNTWILTDLPPGNKTFGCK*IFKKKLRT 1098
            +D P S  +A  SPD   WKEA+ S+++SII N TW +T+ P G K  GCK +FKKKLR 
Sbjct: 788  DDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRP 847

Query: 1097 DVTVETYKARFVAQSFRQKVGIDY 1026
            D T+E YKAR VA+ + QK G D+
Sbjct: 848  DGTIEKYKARLVAKGYTQKEGEDF 871



 Score = 63.2 bits (152), Expect(4) = e-143
 Identities = 30/47 (63%), Positives = 36/47 (76%)
 Frame = -2

Query: 155  FILGGDAVSWQSAKQTIIARSTMEAELVSLDTSCSGAEWLRSFLPNI 15
            F LGG AVSW+S KQTI+ RSTMEAEL +LDT+   AEWLR  L ++
Sbjct: 1168 FTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDL 1214



 Score = 56.6 bits (135), Expect(4) = e-143
 Identities = 25/41 (60%), Positives = 31/41 (75%)
 Frame = -3

Query: 1747 YILNRVSMSDRKKTTYELWKGRPPSLA*LRVWGCLVKVLVP 1625
            ++LNRV   ++ KT YE+W GR PSL+ LR WGCLVKV VP
Sbjct: 628  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLVKVNVP 668


>gb|AAP53927.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1297

 Score =  315 bits (808), Expect(4) = e-143
 Identities = 164/295 (55%), Positives = 207/295 (70%), Gaps = 5/295 (1%)
 Frame = -1

Query: 1020 TYAPVARITTIRIVLALASIHKLLVHQIDMKR-----DLEEEIYMEQPEGFFVLRQENKV 856
            TY+PVAR+TTIR++L+LA  H LLVHQ+D+K      +L+EEIYM+QP+GF V  QE KV
Sbjct: 874  TYSPVARLTTIRVLLSLAVSHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 933

Query: 855  CKLVKSLYGLKQAPKQCHEKFDQVIIF*GFQINESDKCLYCKMVGNKCVILCLYVXXXXX 676
            CKL+KSLYGLKQAPKQCHEKFD+ +   GF +NE+DKC+Y +  G + VILCLYV     
Sbjct: 934  CKLLKSLYGLKQAPKQCHEKFDKPLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILI 993

Query: 675  XXXXXXXXXXIKTFISHHFDMKYLGEVDVILGVKLSRTHKGISLSQSHYIEKILKKFGYL 496
                      +K+F+S +FDMK LG  DVIL +KL R   GI+L QSHY+EKIL +FGY+
Sbjct: 994  FGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYI 1053

Query: 495  DRSIVSTP*DPSVHLKKNLGDPVSQEQYAHIIGILMY*SNRTCPDISYTVSRLSRYISNL 316
            D     TP DPS+ L KN     +Q +Y+ IIG LMY ++ T PDIS+ VS+LSR+ SN 
Sbjct: 1054 DSKPSPTPYDPSLLLHKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNP 1113

Query: 315  PRNHWVALERVFRYLKGIISYSLCYGDYPVVLEGYSDDNWITDSLGLKSTSGYFY 151
              +HW ALERV RYLKG +   L Y  YP VLEGYSD NWI+D   +K+TSGY +
Sbjct: 1114 GDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVF 1168



 Score =  149 bits (376), Expect(4) = e-143
 Identities = 81/208 (38%), Positives = 118/208 (56%), Gaps = 14/208 (6%)
 Frame = -2

Query: 1607 KIGYMAIDTIFVG*YFDSNTNRFLVINSDFSEIANETIIESRDATLFENAFPFKNCVPKA 1428
            K+G   +D +F+G    S   RFL++ S+  ++   TI+ESRDAT FE+ FP K+     
Sbjct: 674  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD----- 728

Query: 1427 FSYDLSYLHLYHPSYSVYASVEP--------------DLLFEPRRSKRARVERNLGEEFV 1290
                 ++     PS  + +S+ P              D+   PRRSKR R  ++ G++F 
Sbjct: 729  -----THSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 1289 TFFIEDAPSSYHDAINSPDTPLWKEAINSKIESIIGNNTWILTDLPPGNKTFGCK*IFKK 1110
             + ++D P S  +A  SPD   WKEA+ S+++SII N TW +T+ P G K  GCK +FKK
Sbjct: 784  VYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKK 843

Query: 1109 KLRTDVTVETYKARFVAQSFRQKVGIDY 1026
            KLR D T+E YKAR VA+ + QK G D+
Sbjct: 844  KLRPDGTIEKYKARLVAKGYTQKEGEDF 871



 Score = 63.2 bits (152), Expect(4) = e-143
 Identities = 30/47 (63%), Positives = 36/47 (76%)
 Frame = -2

Query: 155  FILGGDAVSWQSAKQTIIARSTMEAELVSLDTSCSGAEWLRSFLPNI 15
            F LGG AVSW+S KQTI+ RSTMEAEL +LDT+   AEWLR  L ++
Sbjct: 1168 FTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDL 1214



 Score = 55.1 bits (131), Expect(4) = e-143
 Identities = 24/41 (58%), Positives = 30/41 (73%)
 Frame = -3

Query: 1747 YILNRVSMSDRKKTTYELWKGRPPSLA*LRVWGCLVKVLVP 1625
            ++LNRV   ++ KT YE+W GR PSL+ LR WGCL KV VP
Sbjct: 628  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVP 668


>gb|ABF97537.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1397

 Score =  314 bits (805), Expect(4) = e-143
 Identities = 163/295 (55%), Positives = 208/295 (70%), Gaps = 5/295 (1%)
 Frame = -1

Query: 1020 TYAPVARITTIRIVLALASIHKLLVHQIDMKR-----DLEEEIYMEQPEGFFVLRQENKV 856
            TY+PVAR+TTIR++L+LA+ H LLVHQ+D+K      +L+EEIYM+QP+GF V  QE KV
Sbjct: 951  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 1010

Query: 855  CKLVKSLYGLKQAPKQCHEKFDQVIIF*GFQINESDKCLYCKMVGNKCVILCLYVXXXXX 676
            CKL+KSLYGLKQAPKQ HEKFD+ +   GF +NE+DKC+Y +  G + VILCLYV     
Sbjct: 1011 CKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILI 1070

Query: 675  XXXXXXXXXXIKTFISHHFDMKYLGEVDVILGVKLSRTHKGISLSQSHYIEKILKKFGYL 496
                      +K+F+S +FDMK LG  DVIL +KL R   GI+L QSHY+EKIL +FGY+
Sbjct: 1071 FGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYI 1130

Query: 495  DRSIVSTP*DPSVHLKKNLGDPVSQEQYAHIIGILMY*SNRTCPDISYTVSRLSRYISNL 316
            D     TP DPS+ L+KN     +Q +Y+ IIG LMY ++ T PDIS+ VS+LSR+ SN 
Sbjct: 1131 DSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNP 1190

Query: 315  PRNHWVALERVFRYLKGIISYSLCYGDYPVVLEGYSDDNWITDSLGLKSTSGYFY 151
              +HW ALERV RYLKG +   L Y  YP VLEGYSD NWI+D   +K+TSGY +
Sbjct: 1191 GDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVF 1245



 Score =  149 bits (377), Expect(4) = e-143
 Identities = 81/208 (38%), Positives = 117/208 (56%), Gaps = 14/208 (6%)
 Frame = -2

Query: 1607 KIGYMAIDTIFVG*YFDSNTNRFLVINSDFSEIANETIIESRDATLFENAFPFKNCVPKA 1428
            K+G   +D +F+G    S   RFL++ S+  ++   TI+ESRDAT FE  FP K+     
Sbjct: 751  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFERFFPMKD----- 805

Query: 1427 FSYDLSYLHLYHPSYSVYASVEP--------------DLLFEPRRSKRARVERNLGEEFV 1290
                 ++     PS  + +S+ P              D+   PRRSKR R  ++ G++F 
Sbjct: 806  -----THSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 860

Query: 1289 TFFIEDAPSSYHDAINSPDTPLWKEAINSKIESIIGNNTWILTDLPPGNKTFGCK*IFKK 1110
             + ++D P S  +A  SPD   WKEA+ S+++SII N TW +T+ P G K  GCK +FKK
Sbjct: 861  VYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKK 920

Query: 1109 KLRTDVTVETYKARFVAQSFRQKVGIDY 1026
            KLR D T+E YKARFV + + QK G D+
Sbjct: 921  KLRPDGTIEKYKARFVGKGYTQKEGEDF 948



 Score = 63.2 bits (152), Expect(4) = e-143
 Identities = 30/47 (63%), Positives = 36/47 (76%)
 Frame = -2

Query: 155  FILGGDAVSWQSAKQTIIARSTMEAELVSLDTSCSGAEWLRSFLPNI 15
            F LGG AVSW+S KQTI+ RSTMEAEL +LDT+   AEWLR  L ++
Sbjct: 1245 FTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDL 1291



 Score = 55.1 bits (131), Expect(4) = e-143
 Identities = 24/41 (58%), Positives = 30/41 (73%)
 Frame = -3

Query: 1747 YILNRVSMSDRKKTTYELWKGRPPSLA*LRVWGCLVKVLVP 1625
            ++LNRV   ++ KT YE+W GR PSL+ LR WGCL KV VP
Sbjct: 705  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVP 745


>gb|AAR87214.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1393

 Score =  314 bits (805), Expect(4) = e-143
 Identities = 163/295 (55%), Positives = 208/295 (70%), Gaps = 5/295 (1%)
 Frame = -1

Query: 1020 TYAPVARITTIRIVLALASIHKLLVHQIDMKR-----DLEEEIYMEQPEGFFVLRQENKV 856
            TY+PVAR+TTIR++L+LA+ H LLVHQ+D+K      +L+EEIYM+QP+GF V  QE KV
Sbjct: 951  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 1010

Query: 855  CKLVKSLYGLKQAPKQCHEKFDQVIIF*GFQINESDKCLYCKMVGNKCVILCLYVXXXXX 676
            CKL+KSLYGLKQAPKQ HEKFD+ +   GF +NE+DKC+Y +  G + VILCLYV     
Sbjct: 1011 CKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILI 1070

Query: 675  XXXXXXXXXXIKTFISHHFDMKYLGEVDVILGVKLSRTHKGISLSQSHYIEKILKKFGYL 496
                      +K+F+S +FDMK LG  DVIL +KL R   GI+L QSHY+EKIL +FGY+
Sbjct: 1071 FGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYI 1130

Query: 495  DRSIVSTP*DPSVHLKKNLGDPVSQEQYAHIIGILMY*SNRTCPDISYTVSRLSRYISNL 316
            D     TP DPS+ L+KN     +Q +Y+ IIG LMY ++ T PDIS+ VS+LSR+ SN 
Sbjct: 1131 DSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNP 1190

Query: 315  PRNHWVALERVFRYLKGIISYSLCYGDYPVVLEGYSDDNWITDSLGLKSTSGYFY 151
              +HW ALERV RYLKG +   L Y  YP VLEGYSD NWI+D   +K+TSGY +
Sbjct: 1191 GDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVF 1245



 Score =  149 bits (377), Expect(4) = e-143
 Identities = 81/208 (38%), Positives = 117/208 (56%), Gaps = 14/208 (6%)
 Frame = -2

Query: 1607 KIGYMAIDTIFVG*YFDSNTNRFLVINSDFSEIANETIIESRDATLFENAFPFKNCVPKA 1428
            K+G   +D +F+G    S   RFL++ S+  ++   TI+ESRDAT FE  FP K+     
Sbjct: 751  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFERFFPMKD----- 805

Query: 1427 FSYDLSYLHLYHPSYSVYASVEP--------------DLLFEPRRSKRARVERNLGEEFV 1290
                 ++     PS  + +S+ P              D+   PRRSKR R  ++ G++F 
Sbjct: 806  -----THSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 860

Query: 1289 TFFIEDAPSSYHDAINSPDTPLWKEAINSKIESIIGNNTWILTDLPPGNKTFGCK*IFKK 1110
             + ++D P S  +A  SPD   WKEA+ S+++SII N TW +T+ P G K  GCK +FKK
Sbjct: 861  VYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKK 920

Query: 1109 KLRTDVTVETYKARFVAQSFRQKVGIDY 1026
            KLR D T+E YKARFV + + QK G D+
Sbjct: 921  KLRPDGTIEKYKARFVGKGYTQKEGEDF 948



 Score = 63.2 bits (152), Expect(4) = e-143
 Identities = 30/47 (63%), Positives = 36/47 (76%)
 Frame = -2

Query: 155  FILGGDAVSWQSAKQTIIARSTMEAELVSLDTSCSGAEWLRSFLPNI 15
            F LGG AVSW+S KQTI+ RSTMEAEL +LDT+   AEWLR  L ++
Sbjct: 1245 FTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDL 1291



 Score = 55.1 bits (131), Expect(4) = e-143
 Identities = 24/41 (58%), Positives = 30/41 (73%)
 Frame = -3

Query: 1747 YILNRVSMSDRKKTTYELWKGRPPSLA*LRVWGCLVKVLVP 1625
            ++LNRV   ++ KT YE+W GR PSL+ LR WGCL KV VP
Sbjct: 705  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVP 745


>gb|ABA91250.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  315 bits (806), Expect(4) = e-143
 Identities = 163/295 (55%), Positives = 208/295 (70%), Gaps = 5/295 (1%)
 Frame = -1

Query: 1020 TYAPVARITTIRIVLALASIHKLLVHQIDMKR-----DLEEEIYMEQPEGFFVLRQENKV 856
            TY+PVAR+TTIR++L+LA+ H LLVHQ+D+K      +L+EEIYM+QP+GF V  QE KV
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 933

Query: 855  CKLVKSLYGLKQAPKQCHEKFDQVIIF*GFQINESDKCLYCKMVGNKCVILCLYVXXXXX 676
            CKL+KSLYGLKQAPKQ HEKFD+ +   GF +NE+DKC+Y +  G + VILCLYV     
Sbjct: 934  CKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRYGGGEGVILCLYVDDILI 993

Query: 675  XXXXXXXXXXIKTFISHHFDMKYLGEVDVILGVKLSRTHKGISLSQSHYIEKILKKFGYL 496
                      +K+F+S +FDMK LG  DVIL +KL R   GI+L QSHY+EKIL +FGY+
Sbjct: 994  FGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYI 1053

Query: 495  DRSIVSTP*DPSVHLKKNLGDPVSQEQYAHIIGILMY*SNRTCPDISYTVSRLSRYISNL 316
            D     TP DPS+ L+KN     +Q +Y+ IIG LMY ++ T PDIS+ VS+LSR+ SN 
Sbjct: 1054 DSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNP 1113

Query: 315  PRNHWVALERVFRYLKGIISYSLCYGDYPVVLEGYSDDNWITDSLGLKSTSGYFY 151
              +HW ALERV RYLKG +   L Y  YP VLEGYSD NWI+D   +K+TSGY +
Sbjct: 1114 GDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVF 1168



 Score =  149 bits (376), Expect(4) = e-143
 Identities = 81/208 (38%), Positives = 118/208 (56%), Gaps = 14/208 (6%)
 Frame = -2

Query: 1607 KIGYMAIDTIFVG*YFDSNTNRFLVINSDFSEIANETIIESRDATLFENAFPFKNCVPKA 1428
            K+G   +D +F+G    S   RFL++ S+  ++   TI+ESRDAT FE+ FP K+     
Sbjct: 674  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD----- 728

Query: 1427 FSYDLSYLHLYHPSYSVYASVEP--------------DLLFEPRRSKRARVERNLGEEFV 1290
                 ++     PS  + +S+ P              D+   PRRSKR R  ++ G++F 
Sbjct: 729  -----THSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 1289 TFFIEDAPSSYHDAINSPDTPLWKEAINSKIESIIGNNTWILTDLPPGNKTFGCK*IFKK 1110
             + ++D P S  +A  SPD   WKEA+ S+++SII N TW +T+ P G K  GCK +FKK
Sbjct: 784  VYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKK 843

Query: 1109 KLRTDVTVETYKARFVAQSFRQKVGIDY 1026
            KLR D T+E YKAR VA+ + QK G D+
Sbjct: 844  KLRPDGTIEKYKARLVAKGYTQKEGEDF 871



 Score = 63.2 bits (152), Expect(4) = e-143
 Identities = 30/47 (63%), Positives = 36/47 (76%)
 Frame = -2

Query: 155  FILGGDAVSWQSAKQTIIARSTMEAELVSLDTSCSGAEWLRSFLPNI 15
            F LGG AVSW+S KQTI+ RSTMEAEL +LDT+   AEWLR  L ++
Sbjct: 1168 FTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDL 1214



 Score = 55.1 bits (131), Expect(4) = e-143
 Identities = 24/41 (58%), Positives = 30/41 (73%)
 Frame = -3

Query: 1747 YILNRVSMSDRKKTTYELWKGRPPSLA*LRVWGCLVKVLVP 1625
            ++LNRV   ++ KT YE+W GR PSL+ LR WGCL KV VP
Sbjct: 628  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVP 668


>emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]
          Length = 1320

 Score =  313 bits (801), Expect(4) = e-143
 Identities = 163/295 (55%), Positives = 208/295 (70%), Gaps = 5/295 (1%)
 Frame = -1

Query: 1020 TYAPVARITTIRIVLALASIHKLLVHQIDMKR-----DLEEEIYMEQPEGFFVLRQENKV 856
            TY+PVAR+TTIR++L+LA+ H LLVHQ+D+K      +L+EEIYM+QP+GF V  QE KV
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 933

Query: 855  CKLVKSLYGLKQAPKQCHEKFDQVIIF*GFQINESDKCLYCKMVGNKCVILCLYVXXXXX 676
            CKL+KSLYGLKQAPKQ HEKFD+ +I  GF +NE+DKC+Y +  G + VILCLYV     
Sbjct: 934  CKLLKSLYGLKQAPKQWHEKFDKTLISAGFAVNEADKCVYYRHGGGEGVILCLYVDDILI 993

Query: 675  XXXXXXXXXXIKTFISHHFDMKYLGEVDVILGVKLSRTHKGISLSQSHYIEKILKKFGYL 496
                      +K+F+S +FDMK LG  DVIL +KL R    I+L QSHY+EKIL +FGY+
Sbjct: 994  FGTNLEVINEVKSFLSKNFDMKDLGVADVILNIKLIRGENEITLLQSHYVEKILNRFGYI 1053

Query: 495  DRSIVSTP*DPSVHLKKNLGDPVSQEQYAHIIGILMY*SNRTCPDISYTVSRLSRYISNL 316
            D     TP DPS+ L+KN     +Q +Y+ IIG LMY ++ T PDIS+ VS+LSR+ SN 
Sbjct: 1054 DSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNP 1113

Query: 315  PRNHWVALERVFRYLKGIISYSLCYGDYPVVLEGYSDDNWITDSLGLKSTSGYFY 151
              +HW ALERV RYLKG +   L Y  YP VLEGYSD NWI+D   +K+TSGY +
Sbjct: 1114 GDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVF 1168



 Score =  150 bits (378), Expect(4) = e-143
 Identities = 82/208 (39%), Positives = 118/208 (56%), Gaps = 14/208 (6%)
 Frame = -2

Query: 1607 KIGYMAIDTIFVG*YFDSNTNRFLVINSDFSEIANETIIESRDATLFENAFPFKNCVPKA 1428
            K+G   +D +F+G    S   RFL++ S+  ++   TIIESRDAT FE+ FP K+     
Sbjct: 674  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVLDMHVGTIIESRDATFFESFFPMKD----- 728

Query: 1427 FSYDLSYLHLYHPSYSVYASVEP--------------DLLFEPRRSKRARVERNLGEEFV 1290
                 ++     PS  + +S+ P              D+   PRRSKR R  ++ G++F 
Sbjct: 729  -----THSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 1289 TFFIEDAPSSYHDAINSPDTPLWKEAINSKIESIIGNNTWILTDLPPGNKTFGCK*IFKK 1110
             + ++D P S  +A  SPD   WKEA+ S+++SII N TW +T+ P G K  GCK +FKK
Sbjct: 784  VYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKK 843

Query: 1109 KLRTDVTVETYKARFVAQSFRQKVGIDY 1026
            KLR D T+E YKAR VA+ + QK G D+
Sbjct: 844  KLRPDGTIEKYKARLVAKGYTQKEGEDF 871



 Score = 63.2 bits (152), Expect(4) = e-143
 Identities = 30/47 (63%), Positives = 36/47 (76%)
 Frame = -2

Query: 155  FILGGDAVSWQSAKQTIIARSTMEAELVSLDTSCSGAEWLRSFLPNI 15
            F LGG AVSW+S KQTI+ RSTMEAEL +LDT+   AEWLR  L ++
Sbjct: 1168 FTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDL 1214



 Score = 56.2 bits (134), Expect(4) = e-143
 Identities = 24/41 (58%), Positives = 31/41 (75%)
 Frame = -3

Query: 1747 YILNRVSMSDRKKTTYELWKGRPPSLA*LRVWGCLVKVLVP 1625
            ++LNRV   ++ KT YE+W GR PSL+ LR+WGCL KV VP
Sbjct: 628  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRIWGCLAKVNVP 668


>emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]
          Length = 1319

 Score =  313 bits (801), Expect(4) = e-143
 Identities = 162/295 (54%), Positives = 207/295 (70%), Gaps = 5/295 (1%)
 Frame = -1

Query: 1020 TYAPVARITTIRIVLALASIHKLLVHQIDMKR-----DLEEEIYMEQPEGFFVLRQENKV 856
            TY+PVAR+TTIR++L+LA+ H LLVHQ+D+K      +L+EEIYM+QP+GF V  QE KV
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 933

Query: 855  CKLVKSLYGLKQAPKQCHEKFDQVIIF*GFQINESDKCLYCKMVGNKCVILCLYVXXXXX 676
            CKL+KSLYGLKQAPKQ HEKFD+ +   GF +NE+DKC+Y +  G + VILCLYV     
Sbjct: 934  CKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILI 993

Query: 675  XXXXXXXXXXIKTFISHHFDMKYLGEVDVILGVKLSRTHKGISLSQSHYIEKILKKFGYL 496
                      +K+F+S +FDMK LG  DVIL +KL R   GI+L QSHY+EKIL +FGY+
Sbjct: 994  FGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYI 1053

Query: 495  DRSIVSTP*DPSVHLKKNLGDPVSQEQYAHIIGILMY*SNRTCPDISYTVSRLSRYISNL 316
            D     TP DPS+ L+KN     +Q +Y+ IIG LMY ++ T PDIS+ VS+LSR+ SN 
Sbjct: 1054 DSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNP 1113

Query: 315  PRNHWVALERVFRYLKGIISYSLCYGDYPVVLEGYSDDNWITDSLGLKSTSGYFY 151
              +HW  LERV RYLKG +   L Y  YP VLEGYSD NWI+D   +K+TSGY +
Sbjct: 1114 GDDHWRVLERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVF 1168



 Score =  149 bits (376), Expect(4) = e-143
 Identities = 81/208 (38%), Positives = 118/208 (56%), Gaps = 14/208 (6%)
 Frame = -2

Query: 1607 KIGYMAIDTIFVG*YFDSNTNRFLVINSDFSEIANETIIESRDATLFENAFPFKNCVPKA 1428
            K+G   +D +F+G    S   RFL++ S+  ++   TI+ESRDAT FE+ FP K+     
Sbjct: 674  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD----- 728

Query: 1427 FSYDLSYLHLYHPSYSVYASVEP--------------DLLFEPRRSKRARVERNLGEEFV 1290
                 ++     PS  + +S+ P              D+   PRRSKR R  ++ G++F 
Sbjct: 729  -----THSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 1289 TFFIEDAPSSYHDAINSPDTPLWKEAINSKIESIIGNNTWILTDLPPGNKTFGCK*IFKK 1110
             + ++D P S  +A  SPD   WKEA+ S+++SII N TW +T+ P G K  GCK +FKK
Sbjct: 784  VYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKK 843

Query: 1109 KLRTDVTVETYKARFVAQSFRQKVGIDY 1026
            KLR D T+E YKAR VA+ + QK G D+
Sbjct: 844  KLRPDGTIEKYKARLVAKGYTQKEGEDF 871



 Score = 63.2 bits (152), Expect(4) = e-143
 Identities = 30/47 (63%), Positives = 36/47 (76%)
 Frame = -2

Query: 155  FILGGDAVSWQSAKQTIIARSTMEAELVSLDTSCSGAEWLRSFLPNI 15
            F LGG AVSW+S KQTI+ RSTMEAEL +LDT+   AEWLR  L ++
Sbjct: 1168 FTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDL 1214



 Score = 57.0 bits (136), Expect(4) = e-143
 Identities = 25/41 (60%), Positives = 30/41 (73%)
 Frame = -3

Query: 1747 YILNRVSMSDRKKTTYELWKGRPPSLA*LRVWGCLVKVLVP 1625
            Y+LNRV   ++ KT YE+W GR PSL+ LR WGCL KV VP
Sbjct: 628  YVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVP 668


>gb|AAT93940.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1861

 Score =  314 bits (805), Expect(4) = e-143
 Identities = 163/295 (55%), Positives = 208/295 (70%), Gaps = 5/295 (1%)
 Frame = -1

Query: 1020 TYAPVARITTIRIVLALASIHKLLVHQIDMKR-----DLEEEIYMEQPEGFFVLRQENKV 856
            TY+PVAR+TTIR++L+LA+ H LLVHQ+D+K      +L+EEIYM+QP+GF V  QE KV
Sbjct: 1288 TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 1347

Query: 855  CKLVKSLYGLKQAPKQCHEKFDQVIIF*GFQINESDKCLYCKMVGNKCVILCLYVXXXXX 676
            CKL+KSLYGLKQAPKQ HEKFD+ +   GF +NE+DKC+Y +  G + VILCLYV     
Sbjct: 1348 CKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILI 1407

Query: 675  XXXXXXXXXXIKTFISHHFDMKYLGEVDVILGVKLSRTHKGISLSQSHYIEKILKKFGYL 496
                      +K+F+S +FDMK LG  DVIL +KL R   GI+L QSHY+EKIL +FGY+
Sbjct: 1408 FGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYI 1467

Query: 495  DRSIVSTP*DPSVHLKKNLGDPVSQEQYAHIIGILMY*SNRTCPDISYTVSRLSRYISNL 316
            D     TP DPS+ L+KN     +Q +Y+ IIG LMY ++ T PDIS+ VS+LSR+ SN 
Sbjct: 1468 DSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNP 1527

Query: 315  PRNHWVALERVFRYLKGIISYSLCYGDYPVVLEGYSDDNWITDSLGLKSTSGYFY 151
              +HW ALERV RYLKG +   L Y  YP VLEGYSD NWI+D   +K+TSGY +
Sbjct: 1528 GDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVF 1582



 Score =  149 bits (376), Expect(4) = e-143
 Identities = 81/208 (38%), Positives = 118/208 (56%), Gaps = 14/208 (6%)
 Frame = -2

Query: 1607 KIGYMAIDTIFVG*YFDSNTNRFLVINSDFSEIANETIIESRDATLFENAFPFKNCVPKA 1428
            K+G   +D +F+G    S   RFL++ S+  ++   TI+ESRDAT FE+ FP K+     
Sbjct: 1088 KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD----- 1142

Query: 1427 FSYDLSYLHLYHPSYSVYASVEP--------------DLLFEPRRSKRARVERNLGEEFV 1290
                 ++     PS  + +S+ P              D+   PRRSKR R  ++ G++F 
Sbjct: 1143 -----THSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 1197

Query: 1289 TFFIEDAPSSYHDAINSPDTPLWKEAINSKIESIIGNNTWILTDLPPGNKTFGCK*IFKK 1110
             + ++D P S  +A  SPD   WKEA+ S+++SII N TW +T+ P G K  GCK +FKK
Sbjct: 1198 VYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKK 1257

Query: 1109 KLRTDVTVETYKARFVAQSFRQKVGIDY 1026
            KLR D T+E YKAR VA+ + QK G D+
Sbjct: 1258 KLRPDGTIEKYKARLVAKGYTQKEGEDF 1285



 Score = 63.2 bits (152), Expect(4) = e-143
 Identities = 30/47 (63%), Positives = 36/47 (76%)
 Frame = -2

Query: 155  FILGGDAVSWQSAKQTIIARSTMEAELVSLDTSCSGAEWLRSFLPNI 15
            F LGG AVSW+S KQTI+ RSTMEAEL +LDT+   AEWLR  L ++
Sbjct: 1582 FTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDL 1628



 Score = 55.1 bits (131), Expect(4) = e-143
 Identities = 24/41 (58%), Positives = 30/41 (73%)
 Frame = -3

Query: 1747 YILNRVSMSDRKKTTYELWKGRPPSLA*LRVWGCLVKVLVP 1625
            ++LNRV   ++ KT YE+W GR PSL+ LR WGCL KV VP
Sbjct: 1042 HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVP 1082


>gb|AAP54573.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  314 bits (805), Expect(4) = e-143
 Identities = 163/295 (55%), Positives = 208/295 (70%), Gaps = 5/295 (1%)
 Frame = -1

Query: 1020 TYAPVARITTIRIVLALASIHKLLVHQIDMKR-----DLEEEIYMEQPEGFFVLRQENKV 856
            TY+PVAR+TTIR++L+LA+ H LLVHQ+D+K      +L+EEIYM+QP+GF V  QE KV
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 933

Query: 855  CKLVKSLYGLKQAPKQCHEKFDQVIIF*GFQINESDKCLYCKMVGNKCVILCLYVXXXXX 676
            CKL+KSLYGLKQAPKQ HEKFD+ +   GF +NE+DKC+Y +  G + VILCLYV     
Sbjct: 934  CKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILI 993

Query: 675  XXXXXXXXXXIKTFISHHFDMKYLGEVDVILGVKLSRTHKGISLSQSHYIEKILKKFGYL 496
                      +K+F+S +FDMK LG  DVIL +KL R   GI+L QSHY+EKIL +FGY+
Sbjct: 994  FGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYI 1053

Query: 495  DRSIVSTP*DPSVHLKKNLGDPVSQEQYAHIIGILMY*SNRTCPDISYTVSRLSRYISNL 316
            D     TP DPS+ L+KN     +Q +Y+ IIG LMY ++ T PDIS+ VS+LSR+ SN 
Sbjct: 1054 DSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNP 1113

Query: 315  PRNHWVALERVFRYLKGIISYSLCYGDYPVVLEGYSDDNWITDSLGLKSTSGYFY 151
              +HW ALERV RYLKG +   L Y  YP VLEGYSD NWI+D   +K+TSGY +
Sbjct: 1114 GDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVF 1168



 Score =  149 bits (376), Expect(4) = e-143
 Identities = 81/208 (38%), Positives = 118/208 (56%), Gaps = 14/208 (6%)
 Frame = -2

Query: 1607 KIGYMAIDTIFVG*YFDSNTNRFLVINSDFSEIANETIIESRDATLFENAFPFKNCVPKA 1428
            K+G   +D +F+G    S   RFL++ S+  ++   TI+ESRDAT FE+ FP K+     
Sbjct: 674  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD----- 728

Query: 1427 FSYDLSYLHLYHPSYSVYASVEP--------------DLLFEPRRSKRARVERNLGEEFV 1290
                 ++     PS  + +S+ P              D+   PRRSKR R  ++ G++F 
Sbjct: 729  -----THSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 1289 TFFIEDAPSSYHDAINSPDTPLWKEAINSKIESIIGNNTWILTDLPPGNKTFGCK*IFKK 1110
             + ++D P S  +A  SPD   WKEA+ S+++SII N TW +T+ P G K  GCK +FKK
Sbjct: 784  VYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKK 843

Query: 1109 KLRTDVTVETYKARFVAQSFRQKVGIDY 1026
            KLR D T+E YKAR VA+ + QK G D+
Sbjct: 844  KLRPDGTIEKYKARLVAKGYTQKEGEDF 871



 Score = 63.2 bits (152), Expect(4) = e-143
 Identities = 30/47 (63%), Positives = 36/47 (76%)
 Frame = -2

Query: 155  FILGGDAVSWQSAKQTIIARSTMEAELVSLDTSCSGAEWLRSFLPNI 15
            F LGG AVSW+S KQTI+ RSTMEAEL +LDT+   AEWLR  L ++
Sbjct: 1168 FTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDL 1214



 Score = 55.1 bits (131), Expect(4) = e-143
 Identities = 24/41 (58%), Positives = 30/41 (73%)
 Frame = -3

Query: 1747 YILNRVSMSDRKKTTYELWKGRPPSLA*LRVWGCLVKVLVP 1625
            ++LNRV   ++ KT YE+W GR PSL+ LR WGCL KV VP
Sbjct: 628  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVP 668


>emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa Japonica Group]
          Length = 1319

 Score =  314 bits (805), Expect(4) = e-143
 Identities = 163/295 (55%), Positives = 208/295 (70%), Gaps = 5/295 (1%)
 Frame = -1

Query: 1020 TYAPVARITTIRIVLALASIHKLLVHQIDMKR-----DLEEEIYMEQPEGFFVLRQENKV 856
            TY+PVAR+TTIR++L+LA+ H LLVHQ+D+K      +L+EEIYM+QP+GF V  QE KV
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 933

Query: 855  CKLVKSLYGLKQAPKQCHEKFDQVIIF*GFQINESDKCLYCKMVGNKCVILCLYVXXXXX 676
            CKL+KSLYGLKQAPKQ HEKFD+ +   GF +NE+DKC+Y +  G + VILCLYV     
Sbjct: 934  CKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILI 993

Query: 675  XXXXXXXXXXIKTFISHHFDMKYLGEVDVILGVKLSRTHKGISLSQSHYIEKILKKFGYL 496
                      +K+F+S +FDMK LG  DVIL +KL R   GI+L QSHY+EKIL +FGY+
Sbjct: 994  FGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYI 1053

Query: 495  DRSIVSTP*DPSVHLKKNLGDPVSQEQYAHIIGILMY*SNRTCPDISYTVSRLSRYISNL 316
            D     TP DPS+ L+KN     +Q +Y+ IIG LMY ++ T PDIS+ VS+LSR+ SN 
Sbjct: 1054 DSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNP 1113

Query: 315  PRNHWVALERVFRYLKGIISYSLCYGDYPVVLEGYSDDNWITDSLGLKSTSGYFY 151
              +HW ALERV RYLKG +   L Y  YP VLEGYSD NWI+D   +K+TSGY +
Sbjct: 1114 GDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVF 1168



 Score =  149 bits (376), Expect(4) = e-143
 Identities = 81/208 (38%), Positives = 118/208 (56%), Gaps = 14/208 (6%)
 Frame = -2

Query: 1607 KIGYMAIDTIFVG*YFDSNTNRFLVINSDFSEIANETIIESRDATLFENAFPFKNCVPKA 1428
            K+G   +D +F+G    S   RFL++ S+  ++   TI+ESRDAT FE+ FP K+     
Sbjct: 674  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD----- 728

Query: 1427 FSYDLSYLHLYHPSYSVYASVEP--------------DLLFEPRRSKRARVERNLGEEFV 1290
                 ++     PS  + +S+ P              D+   PRRSKR R  ++ G++F 
Sbjct: 729  -----THSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 1289 TFFIEDAPSSYHDAINSPDTPLWKEAINSKIESIIGNNTWILTDLPPGNKTFGCK*IFKK 1110
             + ++D P S  +A  SPD   WKEA+ S+++SII N TW +T+ P G K  GCK +FKK
Sbjct: 784  VYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKK 843

Query: 1109 KLRTDVTVETYKARFVAQSFRQKVGIDY 1026
            KLR D T+E YKAR VA+ + QK G D+
Sbjct: 844  KLRPDGTIEKYKARLVAKGYTQKEGEDF 871



 Score = 63.2 bits (152), Expect(4) = e-143
 Identities = 30/47 (63%), Positives = 36/47 (76%)
 Frame = -2

Query: 155  FILGGDAVSWQSAKQTIIARSTMEAELVSLDTSCSGAEWLRSFLPNI 15
            F LGG AVSW+S KQTI+ RSTMEAEL +LDT+   AEWLR  L ++
Sbjct: 1168 FTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDL 1214



 Score = 55.1 bits (131), Expect(4) = e-143
 Identities = 24/41 (58%), Positives = 30/41 (73%)
 Frame = -3

Query: 1747 YILNRVSMSDRKKTTYELWKGRPPSLA*LRVWGCLVKVLVP 1625
            ++LNRV   ++ KT YE+W GR PSL+ LR WGCL KV VP
Sbjct: 628  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVP 668


>gb|AAK84454.1|AC087192_15 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1308

 Score =  314 bits (805), Expect(4) = e-143
 Identities = 163/295 (55%), Positives = 208/295 (70%), Gaps = 5/295 (1%)
 Frame = -1

Query: 1020 TYAPVARITTIRIVLALASIHKLLVHQIDMKR-----DLEEEIYMEQPEGFFVLRQENKV 856
            TY+PVAR+TTIR++L+LA+ H LLVHQ+D+K      +L+EEIYM+QP+GF V  QE KV
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 933

Query: 855  CKLVKSLYGLKQAPKQCHEKFDQVIIF*GFQINESDKCLYCKMVGNKCVILCLYVXXXXX 676
            CKL+KSLYGLKQAPKQ HEKFD+ +   GF +NE+DKC+Y +  G + VILCLYV     
Sbjct: 934  CKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILI 993

Query: 675  XXXXXXXXXXIKTFISHHFDMKYLGEVDVILGVKLSRTHKGISLSQSHYIEKILKKFGYL 496
                      +K+F+S +FDMK LG  DVIL +KL R   GI+L QSHY+EKIL +FGY+
Sbjct: 994  FGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYI 1053

Query: 495  DRSIVSTP*DPSVHLKKNLGDPVSQEQYAHIIGILMY*SNRTCPDISYTVSRLSRYISNL 316
            D     TP DPS+ L+KN     +Q +Y+ IIG LMY ++ T PDIS+ VS+LSR+ SN 
Sbjct: 1054 DSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNP 1113

Query: 315  PRNHWVALERVFRYLKGIISYSLCYGDYPVVLEGYSDDNWITDSLGLKSTSGYFY 151
              +HW ALERV RYLKG +   L Y  YP VLEGYSD NWI+D   +K+TSGY +
Sbjct: 1114 GDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVF 1168



 Score =  149 bits (376), Expect(4) = e-143
 Identities = 81/208 (38%), Positives = 118/208 (56%), Gaps = 14/208 (6%)
 Frame = -2

Query: 1607 KIGYMAIDTIFVG*YFDSNTNRFLVINSDFSEIANETIIESRDATLFENAFPFKNCVPKA 1428
            K+G   +D +F+G    S   RFL++ S+  ++   TI+ESRDAT FE+ FP K+     
Sbjct: 674  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD----- 728

Query: 1427 FSYDLSYLHLYHPSYSVYASVEP--------------DLLFEPRRSKRARVERNLGEEFV 1290
                 ++     PS  + +S+ P              D+   PRRSKR R  ++ G++F 
Sbjct: 729  -----THSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 1289 TFFIEDAPSSYHDAINSPDTPLWKEAINSKIESIIGNNTWILTDLPPGNKTFGCK*IFKK 1110
             + ++D P S  +A  SPD   WKEA+ S+++SII N TW +T+ P G K  GCK +FKK
Sbjct: 784  VYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKK 843

Query: 1109 KLRTDVTVETYKARFVAQSFRQKVGIDY 1026
            KLR D T+E YKAR VA+ + QK G D+
Sbjct: 844  KLRPDGTIEKYKARLVAKGYTQKEGEDF 871



 Score = 63.2 bits (152), Expect(4) = e-143
 Identities = 30/47 (63%), Positives = 36/47 (76%)
 Frame = -2

Query: 155  FILGGDAVSWQSAKQTIIARSTMEAELVSLDTSCSGAEWLRSFLPNI 15
            F LGG AVSW+S KQTI+ RSTMEAEL +LDT+   AEWLR  L ++
Sbjct: 1168 FTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDL 1214



 Score = 55.1 bits (131), Expect(4) = e-143
 Identities = 24/41 (58%), Positives = 30/41 (73%)
 Frame = -3

Query: 1747 YILNRVSMSDRKKTTYELWKGRPPSLA*LRVWGCLVKVLVP 1625
            ++LNRV   ++ KT YE+W GR PSL+ LR WGCL KV VP
Sbjct: 628  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVP 668


>gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1095

 Score =  314 bits (805), Expect(4) = e-143
 Identities = 163/295 (55%), Positives = 208/295 (70%), Gaps = 5/295 (1%)
 Frame = -1

Query: 1020 TYAPVARITTIRIVLALASIHKLLVHQIDMKR-----DLEEEIYMEQPEGFFVLRQENKV 856
            TY+PVAR+TTIR++L+LA+ H LLVHQ+D+K      +L+EEIYM+QP+GF V  QE KV
Sbjct: 667  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 726

Query: 855  CKLVKSLYGLKQAPKQCHEKFDQVIIF*GFQINESDKCLYCKMVGNKCVILCLYVXXXXX 676
            CKL+KSLYGLKQAPKQ HEKFD+ +   GF +NE+DKC+Y +  G + VILCLYV     
Sbjct: 727  CKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILI 786

Query: 675  XXXXXXXXXXIKTFISHHFDMKYLGEVDVILGVKLSRTHKGISLSQSHYIEKILKKFGYL 496
                      +K+F+S +FDMK LG  DVIL +KL R   GI+L QSHY+EKIL +FGY+
Sbjct: 787  FGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYI 846

Query: 495  DRSIVSTP*DPSVHLKKNLGDPVSQEQYAHIIGILMY*SNRTCPDISYTVSRLSRYISNL 316
            D     TP DPS+ L+KN     +Q +Y+ IIG LMY ++ T PDIS+ VS+LSR+ SN 
Sbjct: 847  DSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNP 906

Query: 315  PRNHWVALERVFRYLKGIISYSLCYGDYPVVLEGYSDDNWITDSLGLKSTSGYFY 151
              +HW ALERV RYLKG +   L Y  YP VLEGYSD NWI+D   +K+TSGY +
Sbjct: 907  GDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVF 961



 Score =  149 bits (376), Expect(4) = e-143
 Identities = 79/198 (39%), Positives = 118/198 (59%), Gaps = 4/198 (2%)
 Frame = -2

Query: 1607 KIGYMAIDTIFVG*YFDSNTNRFLVINSDFSEIANETIIESRDATLFENAFPFKNCVPKA 1428
            K+G   +D +F+G    S   RFL++ S+  ++   TI+ESRDAT FE+ FP K+    +
Sbjct: 467  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGS 526

Query: 1427 FS-YDLSYLHLYHPSYSVYASV---EPDLLFEPRRSKRARVERNLGEEFVTFFIEDAPSS 1260
               +++    +  P  + +      E D+   PRRSKR R  ++ G++F  + ++D P S
Sbjct: 527  NQPFEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKS 586

Query: 1259 YHDAINSPDTPLWKEAINSKIESIIGNNTWILTDLPPGNKTFGCK*IFKKKLRTDVTVET 1080
              +A  SPD   WKEA+ S+++SII N TW +T+ P G K  GCK +FKKKLR D T+E 
Sbjct: 587  ISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEK 646

Query: 1079 YKARFVAQSFRQKVGIDY 1026
            YKAR VA+ + QK G D+
Sbjct: 647  YKARLVAKGYTQKEGEDF 664



 Score = 63.2 bits (152), Expect(4) = e-143
 Identities = 30/47 (63%), Positives = 36/47 (76%)
 Frame = -2

Query: 155  FILGGDAVSWQSAKQTIIARSTMEAELVSLDTSCSGAEWLRSFLPNI 15
            F LGG AVSW+S KQTI+ RSTMEAEL +LDT+   AEWLR  L ++
Sbjct: 961  FTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDL 1007



 Score = 55.1 bits (131), Expect(4) = e-143
 Identities = 24/41 (58%), Positives = 30/41 (73%)
 Frame = -3

Query: 1747 YILNRVSMSDRKKTTYELWKGRPPSLA*LRVWGCLVKVLVP 1625
            ++LNRV   ++ KT YE+W GR PSL+ LR WGCL KV VP
Sbjct: 421  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVP 461


>gb|ABF98943.1| retrotransposon protein, putative, unclassified, expressed [Oryza
            sativa Japonica Group]
          Length = 1460

 Score =  314 bits (804), Expect(4) = e-143
 Identities = 162/295 (54%), Positives = 208/295 (70%), Gaps = 5/295 (1%)
 Frame = -1

Query: 1020 TYAPVARITTIRIVLALASIHKLLVHQIDMKR-----DLEEEIYMEQPEGFFVLRQENKV 856
            TY+PVAR+TTIR++L+LA+ H LLVHQ+D+K      +L+EEIYM+QP+GF +  QE KV
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKV 933

Query: 855  CKLVKSLYGLKQAPKQCHEKFDQVIIF*GFQINESDKCLYCKMVGNKCVILCLYVXXXXX 676
            CKL+KSLYGLKQAPKQ HEKFD+ +   GF +NE+DKC+Y +  G + VILCLYV     
Sbjct: 934  CKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILI 993

Query: 675  XXXXXXXXXXIKTFISHHFDMKYLGEVDVILGVKLSRTHKGISLSQSHYIEKILKKFGYL 496
                      +K+F+S +FDMK LG  DVIL +KL R   GI+L QSHY+EKIL +FGY+
Sbjct: 994  FGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYI 1053

Query: 495  DRSIVSTP*DPSVHLKKNLGDPVSQEQYAHIIGILMY*SNRTCPDISYTVSRLSRYISNL 316
            D     TP DPS+ L+KN     +Q +Y+ IIG LMY ++ T PDIS+ VS+LSR+ SN 
Sbjct: 1054 DSKPSPTPYDPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNP 1113

Query: 315  PRNHWVALERVFRYLKGIISYSLCYGDYPVVLEGYSDDNWITDSLGLKSTSGYFY 151
              +HW ALERV RYLKG +   L Y  YP VLEGYSD NWI+D   +K+TSGY +
Sbjct: 1114 GDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVF 1168



 Score =  149 bits (376), Expect(4) = e-143
 Identities = 81/208 (38%), Positives = 118/208 (56%), Gaps = 14/208 (6%)
 Frame = -2

Query: 1607 KIGYMAIDTIFVG*YFDSNTNRFLVINSDFSEIANETIIESRDATLFENAFPFKNCVPKA 1428
            K+G   +D +F+G    S   RFL++ S+  ++   TI+ESRDAT FE+ FP K+     
Sbjct: 674  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD----- 728

Query: 1427 FSYDLSYLHLYHPSYSVYASVEP--------------DLLFEPRRSKRARVERNLGEEFV 1290
                 ++     PS  + +S+ P              D+   PRRSKR R  ++ G++F 
Sbjct: 729  -----THSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 1289 TFFIEDAPSSYHDAINSPDTPLWKEAINSKIESIIGNNTWILTDLPPGNKTFGCK*IFKK 1110
             + ++D P S  +A  SPD   WKEA+ S+++SII N TW +T+ P G K  GCK +FKK
Sbjct: 784  VYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKK 843

Query: 1109 KLRTDVTVETYKARFVAQSFRQKVGIDY 1026
            KLR D T+E YKAR VA+ + QK G D+
Sbjct: 844  KLRPDGTIEKYKARLVAKGYTQKEGEDF 871



 Score = 63.2 bits (152), Expect(4) = e-143
 Identities = 30/47 (63%), Positives = 36/47 (76%)
 Frame = -2

Query: 155  FILGGDAVSWQSAKQTIIARSTMEAELVSLDTSCSGAEWLRSFLPNI 15
            F LGG AVSW+S KQTI+ RSTMEAEL +LDT+   AEWLR  L ++
Sbjct: 1168 FTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDL 1214



 Score = 55.1 bits (131), Expect(4) = e-143
 Identities = 24/41 (58%), Positives = 30/41 (73%)
 Frame = -3

Query: 1747 YILNRVSMSDRKKTTYELWKGRPPSLA*LRVWGCLVKVLVP 1625
            ++LNRV   ++ KT YE+W GR PSL+ LR WGCL KV VP
Sbjct: 628  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVP 668


>gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1391

 Score =  314 bits (805), Expect(4) = e-143
 Identities = 163/295 (55%), Positives = 208/295 (70%), Gaps = 5/295 (1%)
 Frame = -1

Query: 1020 TYAPVARITTIRIVLALASIHKLLVHQIDMKR-----DLEEEIYMEQPEGFFVLRQENKV 856
            TY+PVAR+TTIR++L+LA+ H LLVHQ+D+K      +L+EEIYM+QP+GF V  QE KV
Sbjct: 963  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 1022

Query: 855  CKLVKSLYGLKQAPKQCHEKFDQVIIF*GFQINESDKCLYCKMVGNKCVILCLYVXXXXX 676
            CKL+KSLYGLKQAPKQ HEKFD+ +   GF +NE+DKC+Y +  G + VILCLYV     
Sbjct: 1023 CKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILI 1082

Query: 675  XXXXXXXXXXIKTFISHHFDMKYLGEVDVILGVKLSRTHKGISLSQSHYIEKILKKFGYL 496
                      +K+F+S +FDMK LG  DVIL +KL R   GI+L QSHY+EKIL +FGY+
Sbjct: 1083 FGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYI 1142

Query: 495  DRSIVSTP*DPSVHLKKNLGDPVSQEQYAHIIGILMY*SNRTCPDISYTVSRLSRYISNL 316
            D     TP DPS+ L+KN     +Q +Y+ IIG LMY ++ T PDIS+ VS+LSR+ SN 
Sbjct: 1143 DSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNP 1202

Query: 315  PRNHWVALERVFRYLKGIISYSLCYGDYPVVLEGYSDDNWITDSLGLKSTSGYFY 151
              +HW ALERV RYLKG +   L Y  YP VLEGYSD NWI+D   +K+TSGY +
Sbjct: 1203 GDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVF 1257



 Score =  149 bits (376), Expect(4) = e-143
 Identities = 81/208 (38%), Positives = 118/208 (56%), Gaps = 14/208 (6%)
 Frame = -2

Query: 1607 KIGYMAIDTIFVG*YFDSNTNRFLVINSDFSEIANETIIESRDATLFENAFPFKNCVPKA 1428
            K+G   +D +F+G    S   RFL++ S+  ++   TI+ESRDAT FE+ FP K+     
Sbjct: 763  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD----- 817

Query: 1427 FSYDLSYLHLYHPSYSVYASVEP--------------DLLFEPRRSKRARVERNLGEEFV 1290
                 ++     PS  + +S+ P              D+   PRRSKR R  ++ G++F 
Sbjct: 818  -----THSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 872

Query: 1289 TFFIEDAPSSYHDAINSPDTPLWKEAINSKIESIIGNNTWILTDLPPGNKTFGCK*IFKK 1110
             + ++D P S  +A  SPD   WKEA+ S+++SII N TW +T+ P G K  GCK +FKK
Sbjct: 873  VYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKK 932

Query: 1109 KLRTDVTVETYKARFVAQSFRQKVGIDY 1026
            KLR D T+E YKAR VA+ + QK G D+
Sbjct: 933  KLRPDGTIEKYKARLVAKGYTQKEGEDF 960



 Score = 63.2 bits (152), Expect(4) = e-143
 Identities = 30/47 (63%), Positives = 36/47 (76%)
 Frame = -2

Query: 155  FILGGDAVSWQSAKQTIIARSTMEAELVSLDTSCSGAEWLRSFLPNI 15
            F LGG AVSW+S KQTI+ RSTMEAEL +LDT+   AEWLR  L ++
Sbjct: 1257 FTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDL 1303



 Score = 54.7 bits (130), Expect(4) = e-143
 Identities = 23/41 (56%), Positives = 30/41 (73%)
 Frame = -3

Query: 1747 YILNRVSMSDRKKTTYELWKGRPPSLA*LRVWGCLVKVLVP 1625
            ++LNR+   ++ KT YE+W GR PSL+ LR WGCL KV VP
Sbjct: 717  HVLNRIPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVP 757


>gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  314 bits (804), Expect(4) = e-143
 Identities = 162/295 (54%), Positives = 208/295 (70%), Gaps = 5/295 (1%)
 Frame = -1

Query: 1020 TYAPVARITTIRIVLALASIHKLLVHQIDMKR-----DLEEEIYMEQPEGFFVLRQENKV 856
            TY+PVAR+TTIR++L+LA+ H LLVHQ+D+K      +L+EEIYM+QP+GF +  QE KV
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKV 933

Query: 855  CKLVKSLYGLKQAPKQCHEKFDQVIIF*GFQINESDKCLYCKMVGNKCVILCLYVXXXXX 676
            CKL+KSLYGLKQAPKQ HEKFD+ +   GF +NE+DKC+Y +  G + VILCLYV     
Sbjct: 934  CKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILI 993

Query: 675  XXXXXXXXXXIKTFISHHFDMKYLGEVDVILGVKLSRTHKGISLSQSHYIEKILKKFGYL 496
                      +K+F+S +FDMK LG  DVIL +KL R   GI+L QSHY+EKIL +FGY+
Sbjct: 994  FGTNIEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYI 1053

Query: 495  DRSIVSTP*DPSVHLKKNLGDPVSQEQYAHIIGILMY*SNRTCPDISYTVSRLSRYISNL 316
            D     TP DPS+ L+KN     +Q +Y+ IIG LMY ++ T PDIS+ VS+LSR+ SN 
Sbjct: 1054 DSKPSPTPYDPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNP 1113

Query: 315  PRNHWVALERVFRYLKGIISYSLCYGDYPVVLEGYSDDNWITDSLGLKSTSGYFY 151
              +HW ALERV RYLKG +   L Y  YP VLEGYSD NWI+D   +K+TSGY +
Sbjct: 1114 GDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVF 1168



 Score =  149 bits (376), Expect(4) = e-143
 Identities = 81/208 (38%), Positives = 118/208 (56%), Gaps = 14/208 (6%)
 Frame = -2

Query: 1607 KIGYMAIDTIFVG*YFDSNTNRFLVINSDFSEIANETIIESRDATLFENAFPFKNCVPKA 1428
            K+G   +D +F+G    S   RFL++ S+  ++   TI+ESRDAT FE+ FP K+     
Sbjct: 674  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD----- 728

Query: 1427 FSYDLSYLHLYHPSYSVYASVEP--------------DLLFEPRRSKRARVERNLGEEFV 1290
                 ++     PS  + +S+ P              D+   PRRSKR R  ++ G++F 
Sbjct: 729  -----THSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 1289 TFFIEDAPSSYHDAINSPDTPLWKEAINSKIESIIGNNTWILTDLPPGNKTFGCK*IFKK 1110
             + ++D P S  +A  SPD   WKEA+ S+++SII N TW +T+ P G K  GCK +FKK
Sbjct: 784  VYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKK 843

Query: 1109 KLRTDVTVETYKARFVAQSFRQKVGIDY 1026
            KLR D T+E YKAR VA+ + QK G D+
Sbjct: 844  KLRPDGTIEKYKARLVAKGYTQKEGEDF 871



 Score = 63.2 bits (152), Expect(4) = e-143
 Identities = 30/47 (63%), Positives = 36/47 (76%)
 Frame = -2

Query: 155  FILGGDAVSWQSAKQTIIARSTMEAELVSLDTSCSGAEWLRSFLPNI 15
            F LGG AVSW+S KQTI+ RSTMEAEL +LDT+   AEWLR  L ++
Sbjct: 1168 FTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDL 1214



 Score = 55.1 bits (131), Expect(4) = e-143
 Identities = 24/41 (58%), Positives = 30/41 (73%)
 Frame = -3

Query: 1747 YILNRVSMSDRKKTTYELWKGRPPSLA*LRVWGCLVKVLVP 1625
            ++LNRV   ++ KT YE+W GR PSL+ LR WGCL KV VP
Sbjct: 628  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVP 668


>emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]
          Length = 1302

 Score =  315 bits (806), Expect(4) = e-143
 Identities = 163/295 (55%), Positives = 208/295 (70%), Gaps = 5/295 (1%)
 Frame = -1

Query: 1020 TYAPVARITTIRIVLALASIHKLLVHQIDMKR-----DLEEEIYMEQPEGFFVLRQENKV 856
            TY+PVAR+TTIR++L+LA+ H LLVHQ+D+K      +L+EEIYM+QP+GF V  QE KV
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 933

Query: 855  CKLVKSLYGLKQAPKQCHEKFDQVIIF*GFQINESDKCLYCKMVGNKCVILCLYVXXXXX 676
            CKL+KSLYGLKQAPKQ HEKFD+ +I  GF +NE+DKC+Y +  G + VILCLYV     
Sbjct: 934  CKLLKSLYGLKQAPKQWHEKFDKTLISAGFAVNEADKCVYYRHGGGEGVILCLYVDDILI 993

Query: 675  XXXXXXXXXXIKTFISHHFDMKYLGEVDVILGVKLSRTHKGISLSQSHYIEKILKKFGYL 496
                      +K+F+S +FDMK LG  DVIL +KL R   GI+L QSHY+EKIL +FGY+
Sbjct: 994  FGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYI 1053

Query: 495  DRSIVSTP*DPSVHLKKNLGDPVSQEQYAHIIGILMY*SNRTCPDISYTVSRLSRYISNL 316
            D     TP DPS+ L+KN     +Q +Y+ IIG LMY ++ T PDIS+ VS+LSR+ SN 
Sbjct: 1054 DSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNP 1113

Query: 315  PRNHWVALERVFRYLKGIISYSLCYGDYPVVLEGYSDDNWITDSLGLKSTSGYFY 151
              +HW ALERV RYLKG +     Y  YP VLEGYSD NWI+D   +K+TSGY +
Sbjct: 1114 GDDHWRALERVMRYLKGTVELGFHYTGYPAVLEGYSDSNWISDVDEIKATSGYVF 1168



 Score =  148 bits (374), Expect(4) = e-143
 Identities = 81/204 (39%), Positives = 116/204 (56%), Gaps = 10/204 (4%)
 Frame = -2

Query: 1607 KIGYMAIDTIFVG*YFDSNTNRFLVINSDFSEIANETIIESRDATLFENAFPFKNC---- 1440
            K+G   +D +F+G    S   RFL++ S+  ++   TI+ESRDAT FE+ FP K+     
Sbjct: 674  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGS 733

Query: 1439 ------VPKAFSYDLSYLHLYHPSYSVYASVEPDLLFEPRRSKRARVERNLGEEFVTFFI 1278
                  +P + +      H +          E D+   PRRSKR R  ++ G++F  + +
Sbjct: 734  NQPSEIIPSSITPSEQTEHTHE------LVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLV 787

Query: 1277 EDAPSSYHDAINSPDTPLWKEAINSKIESIIGNNTWILTDLPPGNKTFGCK*IFKKKLRT 1098
            +D P S  +A  SPD   WKEAI S+++SII N TW +T+ P G K  GCK +FKKKLR 
Sbjct: 788  DDTPKSISEAYASPDADYWKEAICSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRP 847

Query: 1097 DVTVETYKARFVAQSFRQKVGIDY 1026
            D T+E YKAR VA+ + QK G D+
Sbjct: 848  DGTIEKYKARLVAKGYTQKEGEDF 871



 Score = 63.2 bits (152), Expect(4) = e-143
 Identities = 30/47 (63%), Positives = 36/47 (76%)
 Frame = -2

Query: 155  FILGGDAVSWQSAKQTIIARSTMEAELVSLDTSCSGAEWLRSFLPNI 15
            F LGG AVSW+S KQTI+ RSTMEAEL +LDT+   AEWLR  L ++
Sbjct: 1168 FTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDL 1214



 Score = 55.1 bits (131), Expect(4) = e-143
 Identities = 24/41 (58%), Positives = 30/41 (73%)
 Frame = -3

Query: 1747 YILNRVSMSDRKKTTYELWKGRPPSLA*LRVWGCLVKVLVP 1625
            ++LNRV   ++ KT YE+W GR PSL+ LR WGCL KV VP
Sbjct: 628  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVP 668


>gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  314 bits (804), Expect(4) = e-143
 Identities = 163/295 (55%), Positives = 208/295 (70%), Gaps = 5/295 (1%)
 Frame = -1

Query: 1020 TYAPVARITTIRIVLALASIHKLLVHQIDMKR-----DLEEEIYMEQPEGFFVLRQENKV 856
            TY+PVAR+TTIR++L+LA+ H LLVHQ+D+K      +L+EEIYM+QP+GF V  QE KV
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 933

Query: 855  CKLVKSLYGLKQAPKQCHEKFDQVIIF*GFQINESDKCLYCKMVGNKCVILCLYVXXXXX 676
            CKL+KSLYGLKQAPKQ HEKFD+ +   GF +NE+DKC+Y +  G + VILCLYV     
Sbjct: 934  CKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILI 993

Query: 675  XXXXXXXXXXIKTFISHHFDMKYLGEVDVILGVKLSRTHKGISLSQSHYIEKILKKFGYL 496
                      +K+F+S +FDMK LG  DVIL +KL R   GI+L QSHY+EKIL +FGY+
Sbjct: 994  FGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYI 1053

Query: 495  DRSIVSTP*DPSVHLKKNLGDPVSQEQYAHIIGILMY*SNRTCPDISYTVSRLSRYISNL 316
            D     TP DPS+ L+KN     +Q +Y+ IIG LMY ++ T PDIS+ VS+LSR+ SN 
Sbjct: 1054 DSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNP 1113

Query: 315  PRNHWVALERVFRYLKGIISYSLCYGDYPVVLEGYSDDNWITDSLGLKSTSGYFY 151
              +HW ALERV RYLKG +   L Y  YP VLEGYSD NWI+D   +K+TSGY +
Sbjct: 1114 GDDHWRALERVMRYLKGTVELGLHYTRYPAVLEGYSDSNWISDVDEIKATSGYVF 1168



 Score =  149 bits (376), Expect(4) = e-143
 Identities = 81/208 (38%), Positives = 118/208 (56%), Gaps = 14/208 (6%)
 Frame = -2

Query: 1607 KIGYMAIDTIFVG*YFDSNTNRFLVINSDFSEIANETIIESRDATLFENAFPFKNCVPKA 1428
            K+G   +D +F+G    S   RFL++ S+  ++   TI+ESRDAT FE+ FP K+     
Sbjct: 674  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD----- 728

Query: 1427 FSYDLSYLHLYHPSYSVYASVEP--------------DLLFEPRRSKRARVERNLGEEFV 1290
                 ++     PS  + +S+ P              D+   PRRSKR R  ++ G++F 
Sbjct: 729  -----THSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 1289 TFFIEDAPSSYHDAINSPDTPLWKEAINSKIESIIGNNTWILTDLPPGNKTFGCK*IFKK 1110
             + ++D P S  +A  SPD   WKEA+ S+++SII N TW +T+ P G K  GCK +FKK
Sbjct: 784  VYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKK 843

Query: 1109 KLRTDVTVETYKARFVAQSFRQKVGIDY 1026
            KLR D T+E YKAR VA+ + QK G D+
Sbjct: 844  KLRPDGTIEKYKARLVAKGYTQKEGEDF 871



 Score = 63.2 bits (152), Expect(4) = e-143
 Identities = 30/47 (63%), Positives = 36/47 (76%)
 Frame = -2

Query: 155  FILGGDAVSWQSAKQTIIARSTMEAELVSLDTSCSGAEWLRSFLPNI 15
            F LGG AVSW+S KQTI+ RSTMEAEL +LDT+   AEWLR  L ++
Sbjct: 1168 FTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDL 1214



 Score = 55.1 bits (131), Expect(4) = e-143
 Identities = 24/41 (58%), Positives = 30/41 (73%)
 Frame = -3

Query: 1747 YILNRVSMSDRKKTTYELWKGRPPSLA*LRVWGCLVKVLVP 1625
            ++LNRV   ++ KT YE+W GR PSL+ LR WGCL KV VP
Sbjct: 628  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVP 668


>gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  314 bits (804), Expect(4) = e-143
 Identities = 162/295 (54%), Positives = 208/295 (70%), Gaps = 5/295 (1%)
 Frame = -1

Query: 1020 TYAPVARITTIRIVLALASIHKLLVHQIDMKR-----DLEEEIYMEQPEGFFVLRQENKV 856
            TY+PVAR+TTIR++L+LA+ H LLVHQ+D+K      +L+EEIYM+QP+GF +  QE KV
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKV 933

Query: 855  CKLVKSLYGLKQAPKQCHEKFDQVIIF*GFQINESDKCLYCKMVGNKCVILCLYVXXXXX 676
            CKL+KSLYGLKQAPKQ HEKFD+ +   GF +NE+DKC+Y +  G + VILCLYV     
Sbjct: 934  CKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILI 993

Query: 675  XXXXXXXXXXIKTFISHHFDMKYLGEVDVILGVKLSRTHKGISLSQSHYIEKILKKFGYL 496
                      +K+F+S +FDMK LG  DVIL +KL R   GI+L QSHY+EKIL +FGY+
Sbjct: 994  FGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYI 1053

Query: 495  DRSIVSTP*DPSVHLKKNLGDPVSQEQYAHIIGILMY*SNRTCPDISYTVSRLSRYISNL 316
            D     TP DPS+ L+KN     +Q +Y+ IIG LMY ++ T PDIS+ VS+LSR+ SN 
Sbjct: 1054 DSKPSPTPYDPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNP 1113

Query: 315  PRNHWVALERVFRYLKGIISYSLCYGDYPVVLEGYSDDNWITDSLGLKSTSGYFY 151
              +HW ALERV RYLKG +   L Y  YP VLEGYSD NWI+D   +K+TSGY +
Sbjct: 1114 GDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVF 1168



 Score =  149 bits (376), Expect(4) = e-143
 Identities = 81/208 (38%), Positives = 118/208 (56%), Gaps = 14/208 (6%)
 Frame = -2

Query: 1607 KIGYMAIDTIFVG*YFDSNTNRFLVINSDFSEIANETIIESRDATLFENAFPFKNCVPKA 1428
            K+G   +D +F+G    S   RFL++ S+  ++   TI+ESRDAT FE+ FP K+     
Sbjct: 674  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKD----- 728

Query: 1427 FSYDLSYLHLYHPSYSVYASVEP--------------DLLFEPRRSKRARVERNLGEEFV 1290
                 ++     PS  + +S+ P              D+   PRRSKR R  ++ G++F 
Sbjct: 729  -----THSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFT 783

Query: 1289 TFFIEDAPSSYHDAINSPDTPLWKEAINSKIESIIGNNTWILTDLPPGNKTFGCK*IFKK 1110
             + ++D P S  +A  SPD   WKEA+ S+++SII N TW +T+ P G K  GCK +FKK
Sbjct: 784  VYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKK 843

Query: 1109 KLRTDVTVETYKARFVAQSFRQKVGIDY 1026
            KLR D T+E YKAR VA+ + QK G D+
Sbjct: 844  KLRPDGTIEKYKARLVAKGYTQKEGEDF 871



 Score = 63.2 bits (152), Expect(4) = e-143
 Identities = 30/47 (63%), Positives = 36/47 (76%)
 Frame = -2

Query: 155  FILGGDAVSWQSAKQTIIARSTMEAELVSLDTSCSGAEWLRSFLPNI 15
            F LGG AVSW+S KQTI+ RSTMEAEL +LDT+   AEWLR  L ++
Sbjct: 1168 FTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDL 1214



 Score = 55.1 bits (131), Expect(4) = e-143
 Identities = 24/41 (58%), Positives = 30/41 (73%)
 Frame = -3

Query: 1747 YILNRVSMSDRKKTTYELWKGRPPSLA*LRVWGCLVKVLVP 1625
            ++LNRV   ++ KT YE+W GR PSL+ LR WGCL KV VP
Sbjct: 628  HVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVP 668