BLASTX nr result
ID: Stemona21_contig00017329
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Stemona21_contig00017329
(5238 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004970756.1| PREDICTED: DNA-directed RNA polymerase D sub... 1072 0.0
ref|XP_004970754.1| PREDICTED: DNA-directed RNA polymerase D sub... 1072 0.0
ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV su... 1069 0.0
ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D sub... 1069 0.0
ref|XP_004970755.1| PREDICTED: DNA-directed RNA polymerase D sub... 1067 0.0
ref|NP_001182824.1| DNA dependent RNA polymerase D largest subun... 1063 0.0
ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 1062 0.0
gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest sub... 1059 0.0
ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV su... 1034 0.0
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub... 992 0.0
emb|CAH66955.1| OSIGBa0147H17.3 [Oryza sativa Indica Group] 984 0.0
ref|XP_004970758.1| PREDICTED: DNA-directed RNA polymerase D sub... 968 0.0
gb|EOY24612.1| DNA-directed RNA polymerase II subunit RPB1-B, pu... 965 0.0
ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citr... 924 0.0
ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV su... 921 0.0
ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV su... 921 0.0
gb|ESW30447.1| hypothetical protein PHAVU_002G153700g [Phaseolus... 920 0.0
gb|ESW30448.1| hypothetical protein PHAVU_002G153700g [Phaseolus... 917 0.0
ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Me... 915 0.0
ref|XP_006590533.1| PREDICTED: DNA-directed RNA polymerase IV su... 909 0.0
>ref|XP_004970756.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X3
[Setaria italica]
Length = 1362
Score = 1072 bits (2772), Expect = 0.0
Identities = 604/1399 (43%), Positives = 847/1399 (60%), Gaps = 23/1399 (1%)
Frame = +2
Query: 629 CKYCTRNSTGWYPPLKFMILSED--IQGK----------KTFSVVAQINGKLPKKFRNKC 772
CKYC+++ + YP + F LS + K + S+VA+ + K + K
Sbjct: 29 CKYCSKDGSKLYPSVIFKTLSSPRVLLSKSKLHRSPSVMERISIVAEAIDRGSNKSKGKG 88
Query: 773 QTDVLPEDYWNFLPNLQHQ-GSNKNRVSLSPMQVRYLLKELDPEYIKRFVSRPELLFLSC 949
+ LP+DYW+F+P+ Q S ++ LSP QV ++LK+ DPE IK+FVSR ELLFLSC
Sbjct: 89 SLEGLPQDYWDFVPSENQQLQSTMTKIILSPYQVFHMLKKSDPELIKQFVSRRELLFLSC 148
Query: 950 LPVIPNSLRVMETSHVFSDGPRLYFDERSMALRKVVELNKKMDELRDYQHDGALLCSHIT 1129
LPV PN RV+E + SDG RL FD+R+ A +++V+++K++D+ R + L S ++
Sbjct: 149 LPVTPNCHRVVEIGYGLSDG-RLTFDDRTKAYKRMVDVSKRIDDYRQHPQFSVLASSLVS 207
Query: 1130 GPVLDCLHKSKLHNRPAAEVSATCKYGRKWLQDVVLGKRSDHSFRMVVVGDPKLRLGEIG 1309
V +CL SKL+++ ++T YG KWL+D VL KRSD++FR ++VGDPK+RL EIG
Sbjct: 208 SRVSECLKSSKLYSKKTDVETSTDTYGMKWLKDAVLSKRSDNAFRSIMVGDPKIRLWEIG 267
Query: 1310 IPSDICDKLFVAEHVNSYNLKKLNITCNSHLLTRE-LYARSKGKLKPLHKTGKLKVGDFF 1486
IP ++ L V+EHV+SYNL+ +N+ CN HLL +E L R GKL + K +L+VGD
Sbjct: 268 IPENLASNLVVSEHVSSYNLENINLKCNLHLLAKEELLIRRNGKLMFIRKANQLEVGDIA 327
Query: 1487 YRPLEDGDIVLINRPPSIHQHSLIAMNVKILQSQPALAMNPLSCAPFAGDFDGDCLHGYV 1666
YRPL+DGD++LINRPPS+HQHSLIA++ KIL Q +++NPL C PF GDFDGDCLHGY+
Sbjct: 328 YRPLQDGDLILINRPPSVHQHSLIALSTKILPIQSVVSINPLCCMPFLGDFDGDCLHGYI 387
Query: 1667 AQSELSRIELRELVSMESQLLNVQDGRXXXXXXXXXXXXAYLLTGRDVFLNKFEMQQLEM 1846
QS SRIEL ELVS+ QLLN+QDGR A+LLT DVFL + E+QQL+M
Sbjct: 388 PQSIRSRIELGELVSLHQQLLNMQDGRSLVSLTHDSLAAAHLLTSTDVFLKESELQQLQM 447
Query: 1847 LCSYLA--PCPAIVQSQEVP-PLWTGHQLLRALLSPCMYFGTESGTPENCGEEILSSDLS 2017
LC ++ P PAI++S LWTG Q LL M F +S E + S S
Sbjct: 448 LCLSVSTTPVPAIIKSMNFEGSLWTGKQFFSMLLPSGMNFSCDSKLHIIDSEVLTCSSGS 507
Query: 2018 FWVKKTLPNFVSSMFKCYGKKALDLLFSAQEVLCEWISMRGFTVSLNDIYLSPDSYSRAK 2197
W++ + S MFK YG+KALD L SAQEVLCE+++MRG +VSL+D+Y+ D YSR K
Sbjct: 508 SWLQNSTTGLFSIMFKQYGRKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRK 567
Query: 2198 MIDEINYALEDAEDACVMKELIMDAEFESLRKCHNENEDALVCLDYDSSIHKPARLS--Q 2371
+ + AL++AE+A +K++++D + KCH+E ED + Y S + + LS +
Sbjct: 568 LTQGVKLALDEAEEAFRIKQILLDPINIPVLKCHDETED----VTYRQSDYIQSNLSVVR 623
Query: 2372 ASVDAFRDVFYELQYAIRPYIGRENSILSMINAGSQGNMQKLVQQSACLGLQLAPGSLSF 2551
+S+ +F+DVF +L ++ ++ +NS++ MINAGS+G+M K VQQ+AC+GLQL F
Sbjct: 624 SSIMSFKDVFNDLLKMVQHHVSNDNSMMVMINAGSKGSMLKYVQQTACVGLQLPASKFPF 683
Query: 2552 PMPDKLVHNLSNPRIEFHSCGMHQNSAGSATGQN-YAVIRSSFVDGLNPIECFDHAISIR 2728
+P +L +S R + +C S GQN YAVIR+SF++GLNP+EC HAIS R
Sbjct: 684 RIPSQL-SCVSWNRQKSLNCEAESTSE-HVEGQNLYAVIRNSFIEGLNPLECLLHAISGR 741
Query: 2729 PSLFKENVAKSGSLARKLMFYMRDLYMAYDGTVRSAYGQQLVQFSYGASKEKFIESEESH 2908
+ F E+ G+L RKLM+++RDL++AYDGTVRS+YGQ ++QFSY + + +
Sbjct: 742 ANFFSEHADVPGTLTRKLMYHLRDLHVAYDGTVRSSYGQHIMQFSYDTADDMCCNHDLVG 801
Query: 2909 ELFSDGNIESNGVGGQPVXXXXXXXXXXXXXXXXDLPTNSLEPSPLMNLKKILECXXXXX 3088
EL G PV D P N LE SPLMNL+++ +C
Sbjct: 802 EL------------GAPVGSWAACSISEAAYGALDHPVNGLEDSPLMNLQEVFKCHKATN 849
Query: 3089 XXXXXXXXXXXXXXERWLYGFEYGALEVKNHLDRVLFSDLLTNFMIFYDAYGEEGTNCSP 3268
+++ Y EY +LEVKNHL+RV FSDL+ MI YD ++ P
Sbjct: 850 SGDHVGLLFLSKHLKKYRYSLEYASLEVKNHLERVNFSDLVETIMIIYDGC-DKTRKGGP 908
Query: 3269 WISHFHVDKERLVRKRLTIQAVIEKLETNYGSRRKKSGKVQLPKVHIRSQCCSFLDEEGK 3448
W +HFH+ KE + +KRL + V+E+L Y + R + +P VHI + CS D+ +
Sbjct: 909 WTTHFHISKEMMKKKRLGLGFVVEELTKEYDATRNQLNNA-IPSVHISKRKCSVGDQCVQ 967
Query: 3449 NDKTCCITV---AVSDNCITLETIKDSVIPDILQTLIKGFLEFKKVDIIWGSQIDSNGEL 3619
N CCIT+ A S++ L+TIK VIP IL TL+KGFLEFK V+I Q +GEL
Sbjct: 968 NS-ACCITLVAQAESNSMSQLDTIKKRVIPSILDTLLKGFLEFKDVEI----QCRHDGEL 1022
Query: 3620 FVKVTRSQSCHVETFWSNLTDACIPIMHLIDWERSHPDDICGVYNVCGIEGAWKYLFRAL 3799
VKV S+ C FW+ L +ACIP+M LIDWE+S P ++ ++ GI+ AWK +L
Sbjct: 1023 LVKVGMSEHCKAGRFWATLQNACIPVMELIDWEQSQPKNVYDIFCSYGIDSAWKCFVESL 1082
Query: 3800 KSTTSDIGRSIHQEHLLLVADCLTVSGKFHGLSARGLTVQRKSASISSPFNQACFSNPRD 3979
KS TSDIGR++ +EHLL+VAD L+V+G+F LS++GL QR SISSPF++ACFS P
Sbjct: 1083 KSVTSDIGRNVRREHLLIVADSLSVTGQFQALSSQGLNQQRSRLSISSPFSEACFSRPAR 1142
Query: 3980 RFINAAKQGSIDNLYGTVDALAWGKEATLGTGGPFEIIYSGKVHNPKKSESIYETLNCMR 4159
FINAAK S+DNL G++DA+AWGKE GT GPFEI+++GK H P+++ESIY+ L
Sbjct: 1143 SFINAAKHCSVDNLCGSLDAIAWGKEPFNGTSGPFEIMHAGKPHEPEQNESIYDFLRSPE 1202
Query: 4160 SDKFHHDNRPAYRNITAKWKGKSKFAKAHSNTGYLGSNLMLNKVNLEGLWNEEFVKNPGD 4339
F D+ R T K+ + G + + D
Sbjct: 1203 VRNFEKDHMDTCRQSTENALRCRLACKSKDSATVQGGAMTI------------------D 1244
Query: 4340 QANCHPELHASDKSELTTFGLNSSPNEGKICSWLDVVDMSSSLRAILNEYQMGASLTEGH 4519
Q H K+ W +++DM +SL+ +L EY + + E
Sbjct: 1245 QGFLH----------------------AKVGIWDNIIDMRTSLQNMLREYPLNGFVKETD 1282
Query: 4520 KSLLMEALNYHPKREAKLGIGVQDIKIGHSLSHPDSRCFILFREDGTKDDVSYHKCVIGA 4699
KS L+EAL +HP K+G+GV++IKIG + SHP +RCFIL R+DGT +D SY+KCV GA
Sbjct: 1283 KSQLVEALKFHPNGAQKIGVGVREIKIGLNPSHPGTRCFILLRKDGTTEDFSYNKCVQGA 1342
Query: 4700 AKQISPEIGLWAENKLYRR 4756
A ISP++G + E KL+RR
Sbjct: 1343 ANSISPQLGSYFEKKLHRR 1361
>ref|XP_004970754.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X1
[Setaria italica] gi|514785102|ref|XP_004970757.1|
PREDICTED: DNA-directed RNA polymerase D subunit 1-like
isoform X4 [Setaria italica]
Length = 1451
Score = 1072 bits (2772), Expect = 0.0
Identities = 604/1399 (43%), Positives = 847/1399 (60%), Gaps = 23/1399 (1%)
Frame = +2
Query: 629 CKYCTRNSTGWYPPLKFMILSED--IQGK----------KTFSVVAQINGKLPKKFRNKC 772
CKYC+++ + YP + F LS + K + S+VA+ + K + K
Sbjct: 118 CKYCSKDGSKLYPSVIFKTLSSPRVLLSKSKLHRSPSVMERISIVAEAIDRGSNKSKGKG 177
Query: 773 QTDVLPEDYWNFLPNLQHQ-GSNKNRVSLSPMQVRYLLKELDPEYIKRFVSRPELLFLSC 949
+ LP+DYW+F+P+ Q S ++ LSP QV ++LK+ DPE IK+FVSR ELLFLSC
Sbjct: 178 SLEGLPQDYWDFVPSENQQLQSTMTKIILSPYQVFHMLKKSDPELIKQFVSRRELLFLSC 237
Query: 950 LPVIPNSLRVMETSHVFSDGPRLYFDERSMALRKVVELNKKMDELRDYQHDGALLCSHIT 1129
LPV PN RV+E + SDG RL FD+R+ A +++V+++K++D+ R + L S ++
Sbjct: 238 LPVTPNCHRVVEIGYGLSDG-RLTFDDRTKAYKRMVDVSKRIDDYRQHPQFSVLASSLVS 296
Query: 1130 GPVLDCLHKSKLHNRPAAEVSATCKYGRKWLQDVVLGKRSDHSFRMVVVGDPKLRLGEIG 1309
V +CL SKL+++ ++T YG KWL+D VL KRSD++FR ++VGDPK+RL EIG
Sbjct: 297 SRVSECLKSSKLYSKKTDVETSTDTYGMKWLKDAVLSKRSDNAFRSIMVGDPKIRLWEIG 356
Query: 1310 IPSDICDKLFVAEHVNSYNLKKLNITCNSHLLTRE-LYARSKGKLKPLHKTGKLKVGDFF 1486
IP ++ L V+EHV+SYNL+ +N+ CN HLL +E L R GKL + K +L+VGD
Sbjct: 357 IPENLASNLVVSEHVSSYNLENINLKCNLHLLAKEELLIRRNGKLMFIRKANQLEVGDIA 416
Query: 1487 YRPLEDGDIVLINRPPSIHQHSLIAMNVKILQSQPALAMNPLSCAPFAGDFDGDCLHGYV 1666
YRPL+DGD++LINRPPS+HQHSLIA++ KIL Q +++NPL C PF GDFDGDCLHGY+
Sbjct: 417 YRPLQDGDLILINRPPSVHQHSLIALSTKILPIQSVVSINPLCCMPFLGDFDGDCLHGYI 476
Query: 1667 AQSELSRIELRELVSMESQLLNVQDGRXXXXXXXXXXXXAYLLTGRDVFLNKFEMQQLEM 1846
QS SRIEL ELVS+ QLLN+QDGR A+LLT DVFL + E+QQL+M
Sbjct: 477 PQSIRSRIELGELVSLHQQLLNMQDGRSLVSLTHDSLAAAHLLTSTDVFLKESELQQLQM 536
Query: 1847 LCSYLA--PCPAIVQSQEVP-PLWTGHQLLRALLSPCMYFGTESGTPENCGEEILSSDLS 2017
LC ++ P PAI++S LWTG Q LL M F +S E + S S
Sbjct: 537 LCLSVSTTPVPAIIKSMNFEGSLWTGKQFFSMLLPSGMNFSCDSKLHIIDSEVLTCSSGS 596
Query: 2018 FWVKKTLPNFVSSMFKCYGKKALDLLFSAQEVLCEWISMRGFTVSLNDIYLSPDSYSRAK 2197
W++ + S MFK YG+KALD L SAQEVLCE+++MRG +VSL+D+Y+ D YSR K
Sbjct: 597 SWLQNSTTGLFSIMFKQYGRKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRK 656
Query: 2198 MIDEINYALEDAEDACVMKELIMDAEFESLRKCHNENEDALVCLDYDSSIHKPARLS--Q 2371
+ + AL++AE+A +K++++D + KCH+E ED + Y S + + LS +
Sbjct: 657 LTQGVKLALDEAEEAFRIKQILLDPINIPVLKCHDETED----VTYRQSDYIQSNLSVVR 712
Query: 2372 ASVDAFRDVFYELQYAIRPYIGRENSILSMINAGSQGNMQKLVQQSACLGLQLAPGSLSF 2551
+S+ +F+DVF +L ++ ++ +NS++ MINAGS+G+M K VQQ+AC+GLQL F
Sbjct: 713 SSIMSFKDVFNDLLKMVQHHVSNDNSMMVMINAGSKGSMLKYVQQTACVGLQLPASKFPF 772
Query: 2552 PMPDKLVHNLSNPRIEFHSCGMHQNSAGSATGQN-YAVIRSSFVDGLNPIECFDHAISIR 2728
+P +L +S R + +C S GQN YAVIR+SF++GLNP+EC HAIS R
Sbjct: 773 RIPSQL-SCVSWNRQKSLNCEAESTSE-HVEGQNLYAVIRNSFIEGLNPLECLLHAISGR 830
Query: 2729 PSLFKENVAKSGSLARKLMFYMRDLYMAYDGTVRSAYGQQLVQFSYGASKEKFIESEESH 2908
+ F E+ G+L RKLM+++RDL++AYDGTVRS+YGQ ++QFSY + + +
Sbjct: 831 ANFFSEHADVPGTLTRKLMYHLRDLHVAYDGTVRSSYGQHIMQFSYDTADDMCCNHDLVG 890
Query: 2909 ELFSDGNIESNGVGGQPVXXXXXXXXXXXXXXXXDLPTNSLEPSPLMNLKKILECXXXXX 3088
EL G PV D P N LE SPLMNL+++ +C
Sbjct: 891 EL------------GAPVGSWAACSISEAAYGALDHPVNGLEDSPLMNLQEVFKCHKATN 938
Query: 3089 XXXXXXXXXXXXXXERWLYGFEYGALEVKNHLDRVLFSDLLTNFMIFYDAYGEEGTNCSP 3268
+++ Y EY +LEVKNHL+RV FSDL+ MI YD ++ P
Sbjct: 939 SGDHVGLLFLSKHLKKYRYSLEYASLEVKNHLERVNFSDLVETIMIIYDGC-DKTRKGGP 997
Query: 3269 WISHFHVDKERLVRKRLTIQAVIEKLETNYGSRRKKSGKVQLPKVHIRSQCCSFLDEEGK 3448
W +HFH+ KE + +KRL + V+E+L Y + R + +P VHI + CS D+ +
Sbjct: 998 WTTHFHISKEMMKKKRLGLGFVVEELTKEYDATRNQLNNA-IPSVHISKRKCSVGDQCVQ 1056
Query: 3449 NDKTCCITV---AVSDNCITLETIKDSVIPDILQTLIKGFLEFKKVDIIWGSQIDSNGEL 3619
N CCIT+ A S++ L+TIK VIP IL TL+KGFLEFK V+I Q +GEL
Sbjct: 1057 NS-ACCITLVAQAESNSMSQLDTIKKRVIPSILDTLLKGFLEFKDVEI----QCRHDGEL 1111
Query: 3620 FVKVTRSQSCHVETFWSNLTDACIPIMHLIDWERSHPDDICGVYNVCGIEGAWKYLFRAL 3799
VKV S+ C FW+ L +ACIP+M LIDWE+S P ++ ++ GI+ AWK +L
Sbjct: 1112 LVKVGMSEHCKAGRFWATLQNACIPVMELIDWEQSQPKNVYDIFCSYGIDSAWKCFVESL 1171
Query: 3800 KSTTSDIGRSIHQEHLLLVADCLTVSGKFHGLSARGLTVQRKSASISSPFNQACFSNPRD 3979
KS TSDIGR++ +EHLL+VAD L+V+G+F LS++GL QR SISSPF++ACFS P
Sbjct: 1172 KSVTSDIGRNVRREHLLIVADSLSVTGQFQALSSQGLNQQRSRLSISSPFSEACFSRPAR 1231
Query: 3980 RFINAAKQGSIDNLYGTVDALAWGKEATLGTGGPFEIIYSGKVHNPKKSESIYETLNCMR 4159
FINAAK S+DNL G++DA+AWGKE GT GPFEI+++GK H P+++ESIY+ L
Sbjct: 1232 SFINAAKHCSVDNLCGSLDAIAWGKEPFNGTSGPFEIMHAGKPHEPEQNESIYDFLRSPE 1291
Query: 4160 SDKFHHDNRPAYRNITAKWKGKSKFAKAHSNTGYLGSNLMLNKVNLEGLWNEEFVKNPGD 4339
F D+ R T K+ + G + + D
Sbjct: 1292 VRNFEKDHMDTCRQSTENALRCRLACKSKDSATVQGGAMTI------------------D 1333
Query: 4340 QANCHPELHASDKSELTTFGLNSSPNEGKICSWLDVVDMSSSLRAILNEYQMGASLTEGH 4519
Q H K+ W +++DM +SL+ +L EY + + E
Sbjct: 1334 QGFLH----------------------AKVGIWDNIIDMRTSLQNMLREYPLNGFVKETD 1371
Query: 4520 KSLLMEALNYHPKREAKLGIGVQDIKIGHSLSHPDSRCFILFREDGTKDDVSYHKCVIGA 4699
KS L+EAL +HP K+G+GV++IKIG + SHP +RCFIL R+DGT +D SY+KCV GA
Sbjct: 1372 KSQLVEALKFHPNGAQKIGVGVREIKIGLNPSHPGTRCFILLRKDGTTEDFSYNKCVQGA 1431
Query: 4700 AKQISPEIGLWAENKLYRR 4756
A ISP++G + E KL+RR
Sbjct: 1432 ANSISPQLGSYFEKKLHRR 1450
Score = 109 bits (272), Expect = 2e-20
Identities = 47/95 (49%), Positives = 67/95 (70%)
Frame = +2
Query: 59 VPEGRLIHIEFDLLSGKEIERTCPVDVTVTSDLRSPKLGLPNVSSECATCGSRNTRECDG 238
+P L I FDL++ ++E+ + +T SD+ SPKLGLPN SS+C TCGS++ R+CDG
Sbjct: 7 LPRAILNAITFDLMTSTDMEKLSSISITEVSDVTSPKLGLPNGSSQCETCGSQSERDCDG 66
Query: 239 HFGVVKFPAIIYHPHLISEVVQILNTICPGCRSIK 343
HFGV K A +++P+ I EVV LN ICPGC +++
Sbjct: 67 HFGVTKLAATVHNPYFIDEVVHFLNQICPGCLNLR 101
>ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
brachyantha]
Length = 1492
Score = 1069 bits (2764), Expect = 0.0
Identities = 589/1411 (41%), Positives = 850/1411 (60%), Gaps = 23/1411 (1%)
Frame = +2
Query: 593 EIRAGATQNQLGCKYCTRNSTGWYPPLKFMILSE------------DIQGKKTFSVVAQI 736
E + T Q CKYC+++ YP + F +L+ + S++A++
Sbjct: 134 ETKGDGTTIQATCKYCSKDGAKLYPSIIFKMLTSPRVTLSRSKLHRNTSVMDKMSIIAEV 193
Query: 737 NGKLPKKFRNKCQTDVLPEDYWNFLPN-LQHQGSNKNRVSLSPMQVRYLLKELDPEYIKR 913
++ K +NK ++LP+D+W+FLP+ Q SN + LSP QV ++LK++DPE I +
Sbjct: 194 ASRVTHKSKNKVPHEILPQDFWDFLPDDNQPPQSNVTKKILSPYQVFHMLKKIDPELINQ 253
Query: 914 FVSRPELLFLSCLPVIPNSLRVMETSHVFSDGPRLYFDERSMALRKVVELNKKMDELRDY 1093
R ELLFLSCLPV PN RV+E + SDGPRL FD+R+ A +++V++++++D+ R +
Sbjct: 254 VTPRRELLFLSCLPVTPNCHRVVEMPYGHSDGPRLAFDDRTKAYKRMVDVSRRIDDYRQH 313
Query: 1094 QHDGALLCSHITGPVLDCLHKSKLHNRPAAEVSATCK--YGRKWLQDVVLGKRSDHSFRM 1267
G S +T V++CL SKL++R + S+T YG KWL+D++L KRSD++FR
Sbjct: 314 PQFGVYASSAVTSRVMECLKSSKLYSRKSDGESSTSTDTYGTKWLKDIILSKRSDNAFRS 373
Query: 1268 VVVGDPKLRLGEIGIPSDICDKLFVAEHVNSYNLKKLNITCNSHLLTRE-LYARSKGKLK 1444
V+VGDPK+ L EIG+P D+ L V+E V+SYN + +N+ CN HLLT+E L R G+L
Sbjct: 374 VMVGDPKINLNEIGMPMDLALNLVVSEQVSSYNFETINLKCNLHLLTKEVLLVRRNGRLI 433
Query: 1445 PLHKTGKLKVGDFFYRPLEDGDIVLINRPPSIHQHSLIAMNVKILQSQPALAMNPLSCAP 1624
+ K KL++GD YRPL+DGD++L+NRPPS+HQHSLIA++ KIL S A+++NPL C P
Sbjct: 434 FIRKANKLEIGDIAYRPLQDGDLILVNRPPSVHQHSLIALSAKILSSHSAVSINPLCCGP 493
Query: 1625 FAGDFDGDCLHGYVAQSELSRIELRELVSMESQLLNVQDGRXXXXXXXXXXXXAYLLTGR 1804
F GDFDGDCLHGYV QS SR+EL ELV + QLLN QDGR A+ LT
Sbjct: 494 FQGDFDGDCLHGYVPQSLQSRVELDELVGLSGQLLNAQDGRSLVSLTHDSLTAAHQLTSS 553
Query: 1805 DVFLNKFEMQQLEMLCSYLA--PCPAIVQSQEVP-PLWTGHQLLRALLSPCMYFGTESGT 1975
DVFL K E QQL+MLCS ++ P P+I++S + PLWTG QL L+ M +
Sbjct: 554 DVFLQKAEFQQLQMLCSSVSSTPMPSILKSSKSQGPLWTGKQLFGMLIPSGMNINFDEKL 613
Query: 1976 PENCGEEILSSDLSFWVKKTLPNFVSSMFKCYGKKALDLLFSAQEVLCEWISMRGFTVSL 2155
E + S SFW++ + S MF+ YG KAL+ L S+Q+VLCE+++MRG +VSL
Sbjct: 614 HIKDSEVLAFSSGSFWLQNNTSSLFSVMFEEYGCKALEFLSSSQDVLCEFLTMRGLSVSL 673
Query: 2156 NDIYLSPDSYSRAKMIDEINYALEDAEDACVMKELIMDAEFESLRKCHNENEDALVCLDY 2335
+D YL D YSR K+I+E++ AL++AE+A +K+++++ K ++ +D L +
Sbjct: 674 SDFYLLSDHYSRRKLIEEVHLALDEAEEAFQIKQILLNPVSIPYLKYYDGADDLLNSYEQ 733
Query: 2336 DSSIHKPARLSQASVDAFRDVFYELQYAIRPYIGRENSILSMINAGSQGNMQKLVQQSAC 2515
+ Q+S+ +F+ VF +L + + ++NS+++MIN+GS+G++ K VQQ+AC
Sbjct: 734 SDYTQVSLPIIQSSITSFKSVFNDLLKMVHQHASKDNSMMAMINSGSKGSVLKFVQQTAC 793
Query: 2516 LGLQLAPGSLSFPMPDKLVHNLSNPRIEFHSCGMHQNSAGSATGQN-YAVIRSSFVDGLN 2692
+GLQL F +P +L +S R + +C M ++ GQN YAVIR+SF+DGLN
Sbjct: 794 VGLQLPASIFPFRIPSEL-SCVSWNRHKSLNCEMTDGTSERMGGQNIYAVIRNSFLDGLN 852
Query: 2693 PIECFDHAISIRPSLFKENVAKSGSLARKLMFYMRDLYMAYDGTVRSAYGQQLVQFSYGA 2872
P+EC HAIS R + F EN G+L RKLM+++RD Y+AYDGTVRS+YGQQ+VQFSY
Sbjct: 853 PLECLLHAISGRANFFSENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYGQQIVQFSYNT 912
Query: 2873 SKEKFIESEESHELFSDGNIESNGVGGQPVXXXXXXXXXXXXXXXXDLPTNSLEPSPLMN 3052
+ F H+L G G PV D P N+LE SPLMN
Sbjct: 913 ADGMF----RDHDL--------EGEPGAPVGSWAACSISEAAYGALDHPVNALEDSPLMN 960
Query: 3053 LKKILECXXXXXXXXXXXXXXXXXXXERWLYGFEYGALEVKNHLDRVLFSDLLTNFMIFY 3232
L+++L+C ++ YGFEY +L+VK+HL+RV FSDL+ MI Y
Sbjct: 961 LQEVLKCRKSTKSVDHTGLLFLSKHLRKYRYGFEYASLQVKDHLERVDFSDLVDAVMILY 1020
Query: 3233 DAYGEEGTNCSPWISHFHVDKERLVRKRLTIQAVIEKLETNYGSRRKKSGKVQLPKVHIR 3412
+ T +PWI+HFH+ +E + KRL + ++ +L Y + RK+S +P V I
Sbjct: 1021 GGSDMQKTQGNPWITHFHLSQETMKIKRLRLGFIVRELIEQYNALRKQSNNT-IPSVCIS 1079
Query: 3413 SQCCSFLDEEGKNDKTCCITVAV---SDNCITLETIKDSVIPDILQTLIKGFLEFKKVDI 3583
+ CS +E KN TCCIT+ S++ L IK+ VIP IL+TL+KGFLEFK V +
Sbjct: 1080 NSNCSVGNECVKNC-TCCITMVAQVESNSTSQLNIIKERVIPSILETLLKGFLEFKNVKV 1138
Query: 3584 IWGSQIDSNGELFVKVTRSQSCHVETFWSNLTDACIPIMHLIDWERSHPDDICGVYNVCG 3763
+ + EL VKV S+ C FW+ L +ACIPIM LIDWERS P+ + ++ G
Sbjct: 1139 ----EYQQDSELVVKVGMSEHCKSGKFWAALQNACIPIMELIDWERSQPERVNDIFCSYG 1194
Query: 3764 IEGAWKYLFRALKSTTSDIGRSIHQEHLLLVADCLTVSGKFHGLSARGLTVQRKSASISS 3943
I+ AWK+ +L+STT IGR+I ++HLL+VADCL+VSG+FHGL+++GL QR S SISS
Sbjct: 1195 IDSAWKFFVESLRSTTDAIGRNIRRQHLLVVADCLSVSGQFHGLTSQGLKHQRTSLSISS 1254
Query: 3944 PFNQACFSNPRDRFINAAKQGSIDNLYGTVDALAWGKEATLGTGGPFEIIYSGKVHNPKK 4123
PF++ACFS P FINAAKQ S+DNL GT+DA+AWGKE +GT GPF+I+YSGK K+
Sbjct: 1255 PFSEACFSRPAHSFINAAKQDSVDNLSGTLDAIAWGKEPCVGTSGPFKILYSGKSLETKQ 1314
Query: 4124 SESIYETLNCMRSDKFHHDNRPAYRNITAKWKGKSKFAKAHSNTGYLGSNLMLNKVNLEG 4303
+E+IY+ L+ YR T K + K+ N G + +
Sbjct: 1315 NENIYDFLHNPDVQAIEKSFMDTYRQRTEKTSKQRSSFKSEDNGTITGGAISV------- 1367
Query: 4304 LWNEEFVKNPGDQANCHPELHASDKSELTTFGLNSSPNEGKICSWLDVVDMSSSLRAILN 4483
+EF+ + K+ W +++DM + L+ +L
Sbjct: 1368 --IQEFL-------------------------------DAKVGIWENIIDMRTCLQNMLR 1394
Query: 4484 EYQMGASLTEGHKSLLMEALNYHPKREAKLGIGVQDIKIGHSLSHPDSRCFILFREDGTK 4663
EY + +TE KS L EAL +HP+ K+G+G+++IK+G + HP+ RCFI+ R D T
Sbjct: 1395 EYTLNEVVTEQDKSCLKEALKFHPRGYDKIGVGIREIKVGLNPGHPNLRCFIVLRNDDTT 1454
Query: 4664 DDVSYHKCVIGAAKQISPEIGLWAENKLYRR 4756
D SY+KCV+GAA + PE+G E L+ +
Sbjct: 1455 ADFSYNKCVLGAANSLKPELGSHMEKILFNK 1485
Score = 109 bits (272), Expect = 2e-20
Identities = 48/104 (46%), Positives = 70/104 (67%)
Frame = +2
Query: 50 EQMVPEGRLIHIEFDLLSGKEIERTCPVDVTVTSDLRSPKLGLPNVSSECATCGSRNTRE 229
E +PE +L I+F L++ ++E+ V + D+ + KLGLPN + +CATCG RN R+
Sbjct: 33 EVKMPEAKLNAIKFSLMTSSDMEKFSSVSIIEMRDVTNAKLGLPNGAPQCATCGFRNIRD 92
Query: 230 CDGHFGVVKFPAIIYHPHLISEVVQILNTICPGCRSIKLEKRNK 361
CDGHFGV+K A +++P+ I EVVQ+LN ICPGC ++K K
Sbjct: 93 CDGHFGVIKLAATVHNPYFIEEVVQLLNQICPGCLTLKQNGETK 136
>ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Brachypodium
distachyon]
Length = 1470
Score = 1069 bits (2764), Expect = 0.0
Identities = 591/1418 (41%), Positives = 846/1418 (59%), Gaps = 32/1418 (2%)
Frame = +2
Query: 599 RAGATQNQLGCKYCTRNSTGWYPPLKFMILSED--------IQGKKTFSVVAQINGKLPK 754
R+ A Q CKYC+++ G YP + F +L+ +Q + + ++
Sbjct: 115 RSDAATIQEPCKYCSKD--GLYPSVIFKVLTSPRITLSKSKLQRNTSVMDKVSVTAEVIN 172
Query: 755 KFRNKCQTDVLPEDYWNFLPNLQHQGSNKNRVSLSPMQVRYLLKELDPEYIKRFVSRPEL 934
+NK +VLP DYWNF+P+ Q N ++ LSP QV ++LK++D E I +F R EL
Sbjct: 173 MSKNKSSLEVLPHDYWNFVPHNQPPQPNTTKILLSPYQVFHILKQVDLELITKFAPRREL 232
Query: 935 LFLSCLPVIPNSLRVMETSHVFSDGPRLYFDERSMALRKVVELNKKMDELRDYQHDGALL 1114
LFLSCLPV PN RV E + FSDGP L +D+R+ A ++ V+ +KK+D+ R + L
Sbjct: 233 LFLSCLPVTPNRHRVAEMPYRFSDGPSLAYDDRTKAYKRTVDASKKIDDYRQHPQFSVLA 292
Query: 1115 CSHITGPVLDCLHKSKLHNRPAAEVSATCKYGR----------KWLQDVVLGKRSDHSFR 1264
S +T V++CL SKL+++ + S+T YG KWL+D +L KRSD++FR
Sbjct: 293 SSFVTSRVMECLQSSKLYSKKTDKESSTDSYGTSVKKNDSYGTKWLKDAILSKRSDYAFR 352
Query: 1265 MVVVGDPKLRLGEIGIPSDICDKLFVAEHVNSYNLKKLNITCNSHLLTRELY-ARSKGKL 1441
++VGDPK+RL EIGIP D+ D LFV EHV+ YN K +N+ CN HLL +EL AR GKL
Sbjct: 353 SIMVGDPKIRLHEIGIPMDLAD-LFVPEHVSIYNFKSINLKCNLHLLAKELLIARRNGKL 411
Query: 1442 KPLHKTGKLKVGDFFYRPLEDGDIVLINRPPSIHQHSLIAMNVKILQSQPALAMNPLSCA 1621
+ K +L++GD YRPL+DGD++L+NRPPS+HQHSLIA++ K+L Q +A+NPL+CA
Sbjct: 412 IYVRKENQLEIGDIVYRPLQDGDLILVNRPPSVHQHSLIALSAKLLPVQSVVAINPLNCA 471
Query: 1622 PFAGDFDGDCLHGYVAQSELSRIELRELVSMESQLLNVQDGRXXXXXXXXXXXXAYLLTG 1801
P +GDFDGDCLHGYV QS SR+EL ELVS+ QLLN+QDGR A+LLT
Sbjct: 472 PLSGDFDGDCLHGYVPQSIGSRVELGELVSLSHQLLNMQDGRSLVSLTHDSLAAAHLLTS 531
Query: 1802 RDVFLNKFEMQQLEMLCSYLAPCP--AIVQS-QEVPPLWTGHQLLRALLSPCMYFGTESG 1972
V LNK E QQL+MLC L+P P ++++S PLWTG QL LL M F +
Sbjct: 532 SGVLLNKTEFQQLQMLCVSLSPTPVPSVIKSINPQGPLWTGKQLFGMLLPSGMNFSPDPK 591
Query: 1973 TPENCGEEILSSDLSFWVKKTLPNFVSSMFKCYGKKALDLLFSAQEVLCEWISMRGFTVS 2152
E + S SFW++ S +FK YG +AL+ L SAQ++LCE+++MRG +VS
Sbjct: 592 LHIKDSEVLACSGGSFWLQNNTSGLFSVLFKQYGGEALEFLSSAQDMLCEFLTMRGLSVS 651
Query: 2153 LNDIYLSPDSYSRAKMIDEINYALEDAEDACVMKELIMDAEFESLRKCHNENEDALVCLD 2332
L+DIYL D YSR K +E+N AL++AE+A + ++++ F KC+++ +D +
Sbjct: 652 LSDIYLFSDHYSRRKFAEEVNLALDEAEEAFRVTQILLSPNFIPHLKCYDDCDDLSDSYE 711
Query: 2333 YDSSIHKPARLSQASVDAFRDVFYELQYAIRPYIGRENSILSMINAGSQGNMQKLVQQSA 2512
+ + ++S+ AF+ VF +L ++ + ++NS+++MINAGS+G+M K VQQ+A
Sbjct: 712 QSDFVQSNLPIIKSSIMAFKSVFSDLLKMVQQHTPKDNSMMAMINAGSKGSMLKFVQQAA 771
Query: 2513 CLGLQLAPGSLSFPMPDKLVHNLSNPRIEFHSCGMHQNSAGSATGQN-YAVIRSSFVDGL 2689
C+GLQL G F +P +L N R + C + + + GQN +AVIR+SF++GL
Sbjct: 772 CVGLQLPAGKFPFRIPSELTCASWN-RHKSLDCDISEGARKRLGGQNSHAVIRNSFIEGL 830
Query: 2690 NPIECFDHAISIRPSLFKENVAKSGSLARKLMFYMRDLYMAYDGTVRSAYGQQLVQFSYG 2869
NP+EC H+IS R + F EN G+L + LM+++RD+Y+AYDGTVRS+YGQQ+VQF+Y
Sbjct: 831 NPLECLLHSISGRANFFSENADVPGTLTKNLMYHLRDIYVAYDGTVRSSYGQQIVQFTYD 890
Query: 2870 ASKEKFIESEESHELFSDGNIESNGVGGQPVXXXXXXXXXXXXXXXXDLPTNSLEPSPLM 3049
+++ + + + E G PV D P N +E SPLM
Sbjct: 891 TAEDIYTDCGQEGEF------------GAPVGSWAACSISEAAYGALDHPVNVIEDSPLM 938
Query: 3050 NLKKILECXXXXXXXXXXXXXXXXXXXERWLYGFEYGALEVKNHLDRVLFSDLLTNFMIF 3229
NL+++L+C +++ YGFEY +L V+N+L+ + FS+L+ MI
Sbjct: 939 NLQEVLKCQKGTNSLDHFGLLFLSKNLKKYRYGFEYASLYVQNYLEPMDFSELVNTVMIQ 998
Query: 3230 YDAYGEEGTNCSPWISHFHVDKERLVRKRLTIQAVIEKLETNYGSRRKKSGKVQLPKVHI 3409
YD G + T SPWI+HFH+ KE + RKRL ++ ++E L +Y ++R + V +PKV+I
Sbjct: 999 YDGGGVQKTKGSPWITHFHISKEMMKRKRLGLRLLVEDLTEHYNAKRDQLNNV-IPKVYI 1057
Query: 3410 RSQCCSFLDEEGKNDKTCCITVAVSDNCIT-----LETIKDSVIPDILQTLIKGFLEFKK 3574
S+C D++ N++TCCITV D + L+ +K IP +L T +KGFLEFK
Sbjct: 1058 -SKCKCSDDDDCINNQTCCITVVAQDESNSTSTSQLDDLKKRAIPVLLATPVKGFLEFKD 1116
Query: 3575 VDIIWGSQIDSNGELFVKVTRSQSCHVETFWSNLTDACIPIMHLIDWERSHPDDICGVYN 3754
V+I Q + EL VKV S+ C FW+ L ACI IM LIDWERS P + ++
Sbjct: 1117 VEI----QCQRDNELVVKVNMSKHCKSGIFWTTLKKACIGIMGLIDWERSRPGSVYDIFC 1172
Query: 3755 VCGIEGAWKYLFRALKSTTSDIGRSIHQEHLLLVADCLTVSGKFHGLSARGLTVQRKSAS 3934
CGI+ AWKY +L+S T DIGR+IH+EHLL+VAD L+VSG+FHGLS++GL QR S
Sbjct: 1173 PCGIDSAWKYFVESLRSKTDDIGRNIHREHLLVVADTLSVSGQFHGLSSQGLKQQRTQLS 1232
Query: 3935 ISSPFNQACFSNPRDRFINAAKQGSIDNLYGTVDALAWGKEATLGTGGPFEIIYSGKVHN 4114
SSPF++ACFS P D FI AAKQ S+DNL G +DALAWGKE GT GPF+I+Y+GK H
Sbjct: 1233 TSSPFSEACFSRPADTFIKAAKQCSVDNLCGNIDALAWGKEPPAGTSGPFKIMYAGKPHE 1292
Query: 4115 PKKSESIYETLN---CMRSDKFHHD-NRPAYRNITAKWKGKSKFAKAHSNTGYLGSNLML 4282
P ++E+IY L+ +K H + + +N + +W + N + G + +
Sbjct: 1293 PVQNENIYGFLHNPEVWGPEKNHMETDSTRTKNASERW--------SSGNATFNGGTISV 1344
Query: 4283 NKVNLEGLWNEEFVKNPGDQANCHPELHASDKSELTTFGLNSSPNEGKICSWLDVVDMSS 4462
+ L K+ W ++DM +
Sbjct: 1345 EQNYL----------------------------------------GAKVGVWDSIIDMRT 1364
Query: 4463 SLRAILNEYQMGASLTEGHKSLLMEALNYHPKREAKLGIGVQDIKIGHSLSHPDSRCFIL 4642
L+ +L EYQ+ + E KS ++EAL +HP+ K+G+G++DIKIG SHP +RCFIL
Sbjct: 1365 CLQNMLREYQLDEYVVELDKSRVIEALRFHPRGREKIGVGIRDIKIGQHPSHPGTRCFIL 1424
Query: 4643 FREDGTKDDVSYHKCVIGAAKQISPEIGLWAENKLYRR 4756
R D T +DVSY KCV GAA ISP++G E L R
Sbjct: 1425 VRNDDTTEDVSYKKCVQGAADSISPQLGSHMEKILQTR 1462
Score = 110 bits (274), Expect = 9e-21
Identities = 50/107 (46%), Positives = 68/107 (63%)
Frame = +2
Query: 41 PLPEQMVPEGRLIHIEFDLLSGKEIERTCPVDVTVTSDLRSPKLGLPNVSSECATCGSRN 220
P E VP L ++FDLLS +IE ++ SD+ S KLGLPN + +C TCGS+N
Sbjct: 8 PNNEMDVPMAELKALKFDLLSSADIETLSSANIIEASDVTSAKLGLPNAAPQCVTCGSQN 67
Query: 221 TRECDGHFGVVKFPAIIYHPHLISEVVQILNTICPGCRSIKLEKRNK 361
R+CDGH GV+K PA +Y P+ + ++VQ LN ICPGC + K + K
Sbjct: 68 VRDCDGHSGVIKLPATVYSPYFLEQLVQFLNQICPGCWTPKQNRDTK 114
>ref|XP_004970755.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X2
[Setaria italica]
Length = 1450
Score = 1067 bits (2759), Expect = 0.0
Identities = 605/1399 (43%), Positives = 845/1399 (60%), Gaps = 23/1399 (1%)
Frame = +2
Query: 629 CKYCTRNSTGWYPPLKFMILSED--IQGK----------KTFSVVAQINGKLPKKFRNKC 772
CKYC+ S YP + F LS + K + S+VA+ + K + K
Sbjct: 118 CKYCSDGSK-LYPSVIFKTLSSPRVLLSKSKLHRSPSVMERISIVAEAIDRGSNKSKGKG 176
Query: 773 QTDVLPEDYWNFLPNLQHQ-GSNKNRVSLSPMQVRYLLKELDPEYIKRFVSRPELLFLSC 949
+ LP+DYW+F+P+ Q S ++ LSP QV ++LK+ DPE IK+FVSR ELLFLSC
Sbjct: 177 SLEGLPQDYWDFVPSENQQLQSTMTKIILSPYQVFHMLKKSDPELIKQFVSRRELLFLSC 236
Query: 950 LPVIPNSLRVMETSHVFSDGPRLYFDERSMALRKVVELNKKMDELRDYQHDGALLCSHIT 1129
LPV PN RV+E + SDG RL FD+R+ A +++V+++K++D+ R + L S ++
Sbjct: 237 LPVTPNCHRVVEIGYGLSDG-RLTFDDRTKAYKRMVDVSKRIDDYRQHPQFSVLASSLVS 295
Query: 1130 GPVLDCLHKSKLHNRPAAEVSATCKYGRKWLQDVVLGKRSDHSFRMVVVGDPKLRLGEIG 1309
V +CL SKL+++ ++T YG KWL+D VL KRSD++FR ++VGDPK+RL EIG
Sbjct: 296 SRVSECLKSSKLYSKKTDVETSTDTYGMKWLKDAVLSKRSDNAFRSIMVGDPKIRLWEIG 355
Query: 1310 IPSDICDKLFVAEHVNSYNLKKLNITCNSHLLTRE-LYARSKGKLKPLHKTGKLKVGDFF 1486
IP ++ L V+EHV+SYNL+ +N+ CN HLL +E L R GKL + K +L+VGD
Sbjct: 356 IPENLASNLVVSEHVSSYNLENINLKCNLHLLAKEELLIRRNGKLMFIRKANQLEVGDIA 415
Query: 1487 YRPLEDGDIVLINRPPSIHQHSLIAMNVKILQSQPALAMNPLSCAPFAGDFDGDCLHGYV 1666
YRPL+DGD++LINRPPS+HQHSLIA++ KIL Q +++NPL C PF GDFDGDCLHGY+
Sbjct: 416 YRPLQDGDLILINRPPSVHQHSLIALSTKILPIQSVVSINPLCCMPFLGDFDGDCLHGYI 475
Query: 1667 AQSELSRIELRELVSMESQLLNVQDGRXXXXXXXXXXXXAYLLTGRDVFLNKFEMQQLEM 1846
QS SRIEL ELVS+ QLLN+QDGR A+LLT DVFL + E+QQL+M
Sbjct: 476 PQSIRSRIELGELVSLHQQLLNMQDGRSLVSLTHDSLAAAHLLTSTDVFLKESELQQLQM 535
Query: 1847 LCSYLA--PCPAIVQSQEVP-PLWTGHQLLRALLSPCMYFGTESGTPENCGEEILSSDLS 2017
LC ++ P PAI++S LWTG Q LL M F +S E + S S
Sbjct: 536 LCLSVSTTPVPAIIKSMNFEGSLWTGKQFFSMLLPSGMNFSCDSKLHIIDSEVLTCSSGS 595
Query: 2018 FWVKKTLPNFVSSMFKCYGKKALDLLFSAQEVLCEWISMRGFTVSLNDIYLSPDSYSRAK 2197
W++ + S MFK YG+KALD L SAQEVLCE+++MRG +VSL+D+Y+ D YSR K
Sbjct: 596 SWLQNSTTGLFSIMFKQYGRKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRK 655
Query: 2198 MIDEINYALEDAEDACVMKELIMDAEFESLRKCHNENEDALVCLDYDSSIHKPARLS--Q 2371
+ + AL++AE+A +K++++D + KCH+E ED + Y S + + LS +
Sbjct: 656 LTQGVKLALDEAEEAFRIKQILLDPINIPVLKCHDETED----VTYRQSDYIQSNLSVVR 711
Query: 2372 ASVDAFRDVFYELQYAIRPYIGRENSILSMINAGSQGNMQKLVQQSACLGLQLAPGSLSF 2551
+S+ +F+DVF +L ++ ++ +NS++ MINAGS+G+M K VQQ+AC+GLQL F
Sbjct: 712 SSIMSFKDVFNDLLKMVQHHVSNDNSMMVMINAGSKGSMLKYVQQTACVGLQLPASKFPF 771
Query: 2552 PMPDKLVHNLSNPRIEFHSCGMHQNSAGSATGQN-YAVIRSSFVDGLNPIECFDHAISIR 2728
+P +L +S R + +C S GQN YAVIR+SF++GLNP+EC HAIS R
Sbjct: 772 RIPSQL-SCVSWNRQKSLNCEAESTSE-HVEGQNLYAVIRNSFIEGLNPLECLLHAISGR 829
Query: 2729 PSLFKENVAKSGSLARKLMFYMRDLYMAYDGTVRSAYGQQLVQFSYGASKEKFIESEESH 2908
+ F E+ G+L RKLM+++RDL++AYDGTVRS+YGQ ++QFSY + + +
Sbjct: 830 ANFFSEHADVPGTLTRKLMYHLRDLHVAYDGTVRSSYGQHIMQFSYDTADDMCCNHDLVG 889
Query: 2909 ELFSDGNIESNGVGGQPVXXXXXXXXXXXXXXXXDLPTNSLEPSPLMNLKKILECXXXXX 3088
EL G PV D P N LE SPLMNL+++ +C
Sbjct: 890 EL------------GAPVGSWAACSISEAAYGALDHPVNGLEDSPLMNLQEVFKCHKATN 937
Query: 3089 XXXXXXXXXXXXXXERWLYGFEYGALEVKNHLDRVLFSDLLTNFMIFYDAYGEEGTNCSP 3268
+++ Y EY +LEVKNHL+RV FSDL+ MI YD ++ P
Sbjct: 938 SGDHVGLLFLSKHLKKYRYSLEYASLEVKNHLERVNFSDLVETIMIIYDGC-DKTRKGGP 996
Query: 3269 WISHFHVDKERLVRKRLTIQAVIEKLETNYGSRRKKSGKVQLPKVHIRSQCCSFLDEEGK 3448
W +HFH+ KE + +KRL + V+E+L Y + R + +P VHI + CS D+ +
Sbjct: 997 WTTHFHISKEMMKKKRLGLGFVVEELTKEYDATRNQLNNA-IPSVHISKRKCSVGDQCVQ 1055
Query: 3449 NDKTCCITV---AVSDNCITLETIKDSVIPDILQTLIKGFLEFKKVDIIWGSQIDSNGEL 3619
N CCIT+ A S++ L+TIK VIP IL TL+KGFLEFK V+I Q +GEL
Sbjct: 1056 NS-ACCITLVAQAESNSMSQLDTIKKRVIPSILDTLLKGFLEFKDVEI----QCRHDGEL 1110
Query: 3620 FVKVTRSQSCHVETFWSNLTDACIPIMHLIDWERSHPDDICGVYNVCGIEGAWKYLFRAL 3799
VKV S+ C FW+ L +ACIP+M LIDWE+S P ++ ++ GI+ AWK +L
Sbjct: 1111 LVKVGMSEHCKAGRFWATLQNACIPVMELIDWEQSQPKNVYDIFCSYGIDSAWKCFVESL 1170
Query: 3800 KSTTSDIGRSIHQEHLLLVADCLTVSGKFHGLSARGLTVQRKSASISSPFNQACFSNPRD 3979
KS TSDIGR++ +EHLL+VAD L+V+G+F LS++GL QR SISSPF++ACFS P
Sbjct: 1171 KSVTSDIGRNVRREHLLIVADSLSVTGQFQALSSQGLNQQRSRLSISSPFSEACFSRPAR 1230
Query: 3980 RFINAAKQGSIDNLYGTVDALAWGKEATLGTGGPFEIIYSGKVHNPKKSESIYETLNCMR 4159
FINAAK S+DNL G++DA+AWGKE GT GPFEI+++GK H P+++ESIY+ L
Sbjct: 1231 SFINAAKHCSVDNLCGSLDAIAWGKEPFNGTSGPFEIMHAGKPHEPEQNESIYDFLRSPE 1290
Query: 4160 SDKFHHDNRPAYRNITAKWKGKSKFAKAHSNTGYLGSNLMLNKVNLEGLWNEEFVKNPGD 4339
F D+ R T K+ + G + + D
Sbjct: 1291 VRNFEKDHMDTCRQSTENALRCRLACKSKDSATVQGGAMTI------------------D 1332
Query: 4340 QANCHPELHASDKSELTTFGLNSSPNEGKICSWLDVVDMSSSLRAILNEYQMGASLTEGH 4519
Q H K+ W +++DM +SL+ +L EY + + E
Sbjct: 1333 QGFLH----------------------AKVGIWDNIIDMRTSLQNMLREYPLNGFVKETD 1370
Query: 4520 KSLLMEALNYHPKREAKLGIGVQDIKIGHSLSHPDSRCFILFREDGTKDDVSYHKCVIGA 4699
KS L+EAL +HP K+G+GV++IKIG + SHP +RCFIL R+DGT +D SY+KCV GA
Sbjct: 1371 KSQLVEALKFHPNGAQKIGVGVREIKIGLNPSHPGTRCFILLRKDGTTEDFSYNKCVQGA 1430
Query: 4700 AKQISPEIGLWAENKLYRR 4756
A ISP++G + E KL+RR
Sbjct: 1431 ANSISPQLGSYFEKKLHRR 1449
Score = 109 bits (272), Expect = 2e-20
Identities = 47/95 (49%), Positives = 67/95 (70%)
Frame = +2
Query: 59 VPEGRLIHIEFDLLSGKEIERTCPVDVTVTSDLRSPKLGLPNVSSECATCGSRNTRECDG 238
+P L I FDL++ ++E+ + +T SD+ SPKLGLPN SS+C TCGS++ R+CDG
Sbjct: 7 LPRAILNAITFDLMTSTDMEKLSSISITEVSDVTSPKLGLPNGSSQCETCGSQSERDCDG 66
Query: 239 HFGVVKFPAIIYHPHLISEVVQILNTICPGCRSIK 343
HFGV K A +++P+ I EVV LN ICPGC +++
Sbjct: 67 HFGVTKLAATVHNPYFIDEVVHFLNQICPGCLNLR 101
>ref|NP_001182824.1| DNA dependent RNA polymerase D largest subunit [Zea mays]
gi|219662980|gb|ACL30979.1| DNA dependent RNA polymerase
D largest subunit [Zea mays] gi|414869425|tpg|DAA47982.1|
TPA: putative DNA dependent RNA polymerase D largest
subunit family protein [Zea mays]
gi|414869426|tpg|DAA47983.1| TPA: putative DNA dependent
RNA polymerase D largest subunit family protein [Zea
mays]
Length = 1444
Score = 1063 bits (2749), Expect = 0.0
Identities = 594/1401 (42%), Positives = 844/1401 (60%), Gaps = 23/1401 (1%)
Frame = +2
Query: 620 QLGCKYCTRNSTGWYPPLKFMILSE------------DIQGKKTFSVVAQINGKLPKKFR 763
Q CKYC+++ + YP + F LS + + S+VA+ ++P + +
Sbjct: 115 QATCKYCSKDGSKLYPSIVFKTLSSPRVLLFKSKLHRNASVMERISIVAEAADRMPNRSK 174
Query: 764 NKCQTDVLPEDYWNFLPNLQHQ-GSNKNRVSLSPMQVRYLLKELDPEYIKRFVSRPELLF 940
K + LP D+W+F+P+ Q SN ++ LSP QV Y+LK+ DPE IK+FVSR ELLF
Sbjct: 175 GKGSLEGLPLDFWDFVPSENKQVQSNMTKIILSPYQVFYMLKKSDPELIKQFVSRRELLF 234
Query: 941 LSCLPVIPNSLRVMETSHVFSDGPRLYFDERSMALRKVVELNKKMDELRDYQHDGALLCS 1120
LSCLPV PN RV+E + DG RL FD+R+ A +++V++++++D+ R + H L S
Sbjct: 235 LSCLPVTPNCHRVVEIGYGLPDG-RLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLASS 293
Query: 1121 HITGPVLDCLHKSKLHNRPAAEVSATCKYGRKWLQDVVLGKRSDHSFRMVVVGDPKLRLG 1300
++ V +CL SKL+++ A ++T YG KWL+DVVL KRSD+ FR ++VGDPK++L
Sbjct: 294 LVSSRVSECLKSSKLYSKKADGETSTDTYGMKWLKDVVLSKRSDNVFRSIMVGDPKIKLW 353
Query: 1301 EIGIPSDICDKLFVAEHVNSYNLKKLNITCNSHLLTR-ELYARSKGKLKPLHKTGKLKVG 1477
EIGIP D+ L V+EHV+SYN + N+ CN HLL + EL+ R GKL L K +L++G
Sbjct: 354 EIGIPEDLSSSLVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQLEIG 413
Query: 1478 DFFYRPLEDGDIVLINRPPSIHQHSLIAMNVKILQSQPALAMNPLSCAPFAGDFDGDCLH 1657
D YRPL+DGDI+LINRPPS+HQHSLIA++ KIL +++NPL C PFAGDFDGDCLH
Sbjct: 414 DIAYRPLQDGDIILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLH 473
Query: 1658 GYVAQSELSRIELRELVSMESQLLNVQDGRXXXXXXXXXXXXAYLLTGRDVFLNKFEMQQ 1837
GY+ QS SR+EL ELVS+ +QLLN+QDGR A+LLT DVFL K E+QQ
Sbjct: 474 GYIPQSIRSRVELEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQ 533
Query: 1838 LEMLC-SYLAPCPAIVQSQEVP-PLWTGHQLLRALLSPCMYFGTESGTPENCGEEILSSD 2011
L+MLC S P PA+++S LWTG QL LL M F ++ E + S
Sbjct: 534 LQMLCLSVSTPAPAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIMDSEVLTCSL 593
Query: 2012 LSFWVKKTLPNFVSSMFKCYGKKALDLLFSAQEVLCEWISMRGFTVSLNDIYLSPDSYSR 2191
S W++ S MFK YG KALD L SAQEVLCE+++MRG +VSL+D+Y+ D YSR
Sbjct: 594 GSSWLQNNTSGLFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSR 653
Query: 2192 AKMIDEINYALEDAEDACVMKELIMDAEFESLRKCHNENEDALVCLDYDSSIHKPARLSQ 2371
K+ + + AL +AE+A +K++++D + KCH+E ED V I + +
Sbjct: 654 RKLAEGVKLALYEAEEAFRVKKILLDPINIPVLKCHDETED--VTYRQSDCIQSNPSVIR 711
Query: 2372 ASVDAFRDVFYELQYAIRPYIGRENSILSMINAGSQGNMQKLVQQSACLGLQLAPGSLSF 2551
+S+ AF+DVF +L ++ ++ +NS++ MINAGS+G+M K QQ+AC+GLQL F
Sbjct: 712 SSIMAFKDVFRDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASKFPF 771
Query: 2552 PMPDKLVHNLSNPRIEFHSCGMHQNSAGSATGQN-YAVIRSSFVDGLNPIECFDHAISIR 2728
+P +L N + + ++++ GQN YAVI++SF++GLNP+EC HAIS R
Sbjct: 772 RIPSQLSCISWNGQKSLNYEA--ESTSERVGGQNLYAVIKNSFIEGLNPLECLLHAISGR 829
Query: 2729 PSLFKENVAKSGSLARKLMFYMRDLYMAYDGTVRSAYGQQLVQFSYGASKEKFIESEESH 2908
+ F EN G+L RKLM+++RD+++AYDGTVRS+YGQQ+VQFSY S + ++
Sbjct: 830 ANFFSENADVPGTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSYD-SVDDLVDKL--- 885
Query: 2909 ELFSDGNIESNGVGGQPVXXXXXXXXXXXXXXXXDLPTNSLEPSPLMNLKKILECXXXXX 3088
G PV + P N LE SPLMNL+++ +C
Sbjct: 886 --------------GAPVGCRAACSISEAAYGALEHPVNGLEDSPLMNLQEVFKCHKATN 931
Query: 3089 XXXXXXXXXXXXXXERWLYGFEYGALEVKNHLDRVLFSDLLTNFMIFYDAYGEEGTNCSP 3268
+++ YG EY +LEVKNHL+RV FSDL+ MI YD + ++ N
Sbjct: 932 SGDHIGLLFLSRHLKKYRYGLEYASLEVKNHLERVNFSDLVETIMIIYDGH-DKIRNEGM 990
Query: 3269 WISHFHVDKERLVRKRLTIQAVIEKLETNYGSRRKKSGKVQLPKVHIRSQCCSFLDEEGK 3448
W +HFH++K + +KRL ++ V+++L Y + R + +P + I + C + +EG
Sbjct: 991 WTTHFHINKAMMKKKRLGLRFVVDELAKEYDTTRDQLNNA-IPSIRISRRKC-LVGDEGV 1048
Query: 3449 NDKTCCITV---AVSDNCITLETIKDSVIPDILQTLIKGFLEFKKVDIIWGSQIDSNGEL 3619
+CCI V A ++ L+TIK VIP IL TL+KGFLEFK V+I Q +GEL
Sbjct: 1049 KSSSCCIAVVAHAERNSISQLDTIKTRVIPSILDTLLKGFLEFKDVEI----QCPHDGEL 1104
Query: 3620 FVKVTRSQSCHVETFWSNLTDACIPIMHLIDWERSHPDDICGVYNVCGIEGAWKYLFRAL 3799
VKV S+ C FW L +ACIP+M LIDWE S P ++ ++ GI+ AWKY +L
Sbjct: 1105 LVKVCMSEHCKGGRFWPTLQNACIPVMELIDWELSQPSNVSDIFCSYGIDSAWKYFVESL 1164
Query: 3800 KSTTSDIGRSIHQEHLLLVADCLTVSGKFHGLSARGLTVQRKSASISSPFNQACFSNPRD 3979
KS T+D GR+I +EHLL++AD L+V+G+FH LS++GL QR SISSPF++ACFS P
Sbjct: 1165 KSATTDTGRNIRREHLLVIADSLSVTGQFHALSSQGLKQQRTRLSISSPFSEACFSRPAQ 1224
Query: 3980 RFINAAKQGSIDNLYGTVDALAWGKEATLGTGGPFEIIYSGKVHNPKKSESIYETL---N 4150
FINAAKQ S+DNL G++DA+AWGKE GT GPFEI++SGK H P+++ESIY+ L
Sbjct: 1225 SFINAAKQCSVDNLCGSLDAVAWGKEPFNGTSGPFEIMHSGKPHEPEQNESIYDFLCSSK 1284
Query: 4151 CMRSDKFHHDNRPAYRNITAKWKGKSKFAKAHSNTGYLGSNLMLNKVNLEGLWNEEFVKN 4330
+K H D R + + K +K + + + +++F
Sbjct: 1285 VRNFEKNHLDTRRQSTENASICRLACKSSKGSTTVNGVAITI-----------DQDF--- 1330
Query: 4331 PGDQANCHPELHASDKSELTTFGLNSSPNEGKICSWLDVVDMSSSLRAILNEYQMGASLT 4510
LHA K+ W +++DM +SL+ +L EY + +
Sbjct: 1331 ----------LHA------------------KVSIWDNIIDMRTSLQNMLREYPLNGYVA 1362
Query: 4511 EGHKSLLMEALNYHPKREAKLGIGVQDIKIGHSLSHPDSRCFILFREDGTKDDVSYHKCV 4690
E KS L+EAL +H + K+G+GV++IKIG + SHP +RCFIL R D T +D SYHKCV
Sbjct: 1363 EPDKSQLIEALKFHSRGAEKIGVGVREIKIGLNPSHPGTRCFILLRNDDTTEDFSYHKCV 1422
Query: 4691 IGAAKQISPEIGLWAENKLYR 4753
GAA ISP++G + + YR
Sbjct: 1423 QGAADSISPQLGSYLKKLYYR 1443
Score = 103 bits (258), Expect = 6e-19
Identities = 46/92 (50%), Positives = 63/92 (68%)
Frame = +2
Query: 62 PEGRLIHIEFDLLSGKEIERTCPVDVTVTSDLRSPKLGLPNVSSECATCGSRNTRECDGH 241
PE L I+FDL++ ++E+ + + SD+ SPKLGLPN S +C TCGS+ R+CDGH
Sbjct: 8 PEAILNAIKFDLMTSTDMEKLSSMSIIEVSDVTSPKLGLPNGSLQCETCGSQRGRDCDGH 67
Query: 242 FGVVKFPAIIYHPHLISEVVQILNTICPGCRS 337
FGV K A +++P+ I +VV LN ICPGC S
Sbjct: 68 FGVTKLAATVHNPYFIDDVVHFLNRICPGCLS 99
>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
1-like [Vitis vinifera]
Length = 1560
Score = 1062 bits (2746), Expect = 0.0
Identities = 634/1582 (40%), Positives = 892/1582 (56%), Gaps = 24/1582 (1%)
Frame = +2
Query: 44 LPEQMVPEGRLIHIEFDLLSGKEIERTCPVDVTVTSDLRSPKLGLPNVSSECATCGSRNT 223
L EQ VP G LI I+FD+ + +++E+ + + +++ PKLG+PN S +C+TCG+++T
Sbjct: 6 LEEQQVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCSTCGAKDT 65
Query: 224 RECDGHFGVVKFPAIIYHPHLISEVVQILNTICPGCRSIKLEKRNKDFLPVDFTDKSMKV 403
++C+G + +V+Q L + C LE K+
Sbjct: 66 KKCEG---------------AVRQVIQKLYLLMISCYLYFLEYA--------------KL 96
Query: 404 IVDDFEVFFRSLGCNVRMLQRFXXXXXXXXXXXXXXXAARLLKVHSKSLKKCSRSEVKQS 583
+ F F + +L + ++++ +K C + Q
Sbjct: 97 XLFIFLGHFGVIKFPFTILHPYFL--------------TEVVQILNKICPGCKSTRQGQW 142
Query: 584 TISEIRAGATQNQLGCKYCTRNSTGWYPPLKFMILSEDIQGKKTFSVVAQINGKLPKKFR 763
GCKYC NS WYP +KF + S+D+ K +++ ++N KLPKK +
Sbjct: 143 VKGADSGSRRLRSKGCKYCAANSNDWYPTMKFKVSSKDLFRKT--AIIVEMNEKLPKKLQ 200
Query: 764 NKCQTDVLPEDYWNFLPNLQHQGSN---KNRVSLSPMQVRYLLKELDPEYIKRFVSRPEL 934
K VLP DYW+F+P Q N NR LS QV YLLK++DP +IK FVSR +
Sbjct: 201 KKSFRPVLPLDYWDFIPKDPQQEENCLNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDS 260
Query: 935 LFLSCLPVIPNSLRVMETSHVFSDGPRLYFDERSMALRKVVELNKKMDELRDYQHDGALL 1114
FL+CLPV PN+ RV E +H S+G L FD+ S A +K+V+ +EL
Sbjct: 261 FFLNCLPVTPNNHRVTEITHALSNGQTLIFDQHSRAYKKLVDFRGTANELS--------- 311
Query: 1115 CSHITGPVLDCLHKSKLHN-RPAAEVSATCKYGRKWLQDVVLGKRSDHSFRMVVVGDPKL 1291
C VLDCL SKL + + ++ SA+ G KW+++V+LGKR++HSFRM+VVGDPKL
Sbjct: 312 CR-----VLDCLKTSKLRSEKSTSKDSASKMSGLKWIKEVLLGKRTNHSFRMIVVGDPKL 366
Query: 1292 RLGEIGIPSDICDKLFVAEHVNSYNLKKLNITCNSHLLTR-ELYARSKGKLKPLHKTGKL 1468
RL EIGIP I ++L ++EH+NS+N +K+ CN LL + + Y R KG L P+ +
Sbjct: 367 RLSEIGIPCHIAEELLISEHLNSWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDF 426
Query: 1469 KVGDFFYRPLEDGDIVLINRPPSIHQHSLIAMNVKILQSQPALAMNPLSCAPFAGDFDGD 1648
+ GD YRPL DGDIVLINRPPSIHQHS+IA++VK+L +++NPL C+PF GDFDGD
Sbjct: 427 QAGDIIYRPLTDGDIVLINRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGD 486
Query: 1649 CLHGYVAQSELSRIELRELVSMESQLLNVQDGRXXXXXXXXXXXXAYLLTGRDVFLNKFE 1828
CLHGY+ QS SR+EL ELV++ QL+N Q GR A+L+ V LN F+
Sbjct: 487 CLHGYIPQSVDSRVELSELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQ 546
Query: 1829 MQQLEMLCSYLAPCPAIVQSQEVPP-LWTGHQLLRALLSPCM-YFGTESGTPENCGEEIL 2002
MQQLEM C Y PAI+++ + +WTG QL LL P Y +G + GE I
Sbjct: 547 MQQLEMFCPYQLQSPAIIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDGELIS 606
Query: 2003 SSDLSFWVKKTLPNFVSSMFKCYGKKALDLLFSAQEVLCEWISMRGFTVSLNDIYLSPDS 2182
SSD S W++ N SS+ K KALD L++AQEVLCEW+SMRG +VSL+DIYLS DS
Sbjct: 607 SSDGSAWLRDIDGNLFSSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSDS 666
Query: 2183 YSRAKMIDEINYALEDAEDACVMKELIMDAEFESLRKCHNENEDALVCLDYDSSIHK--- 2353
SR MIDE+ L AE C K+L++D+ L N++ +V D S ++
Sbjct: 667 ISRKNMIDEVFCGLLVAEQTCHFKQLLVDSSQNFLIGSGENNQNGVVP-DVQSLWYERQG 725
Query: 2354 PARLSQASVDAFRDVFYELQYAIRPYIGRENSILSMINAGSQGNMQKLVQQSACLGLQLA 2533
A L Q+SV AF+ F ++Q + Y ++NS+L+M+ AGS+GN+ KLVQQ CLGLQ +
Sbjct: 726 SAALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHS 785
Query: 2534 PGSLSFPMPDKLVHNLSNPRIEFHSCGMHQNSAGSATGQN--YAVIRSSFVDGLNPIECF 2707
LSF +P +L N + G+ QN YAV+ +SF+ GLNP+ECF
Sbjct: 786 LVPLSFKIPHQLSCAAWNKQ---KVPGLIQNDTSEYAESYIPYAVVENSFLMGLNPLECF 842
Query: 2708 DHAISIRPSLFKENVAKSGSLARKLMFYMRDLYMAYDGTVRSAYGQQLVQFSYGASKEKF 2887
H+++ R S F +N G+L R+LMF+MRDLY+AYDGTVR+AYG QLVQFSY
Sbjct: 843 VHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNI----- 897
Query: 2888 IESEESHELFSDGNIESN---GVGGQPVXXXXXXXXXXXXXXXXDLPTNSLEPSPLMNLK 3058
E SDG E +GGQPV D P + LEPSPL+NLK
Sbjct: 898 ----EHTSTPSDGINEDTCAYDMGGQPVGSISACAISEAAYSALDQPISLLEPSPLLNLK 953
Query: 3059 KILECXXXXXXXXXXXXXXXXXXXERWLYGFEYGALEVKNHLDRVLFSDLLTNFMIFYDA 3238
++LEC E+ +GFEYGALEVKNHL+++LFSD+++ MI +
Sbjct: 954 RVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIVFSP 1013
Query: 3239 YGEEGTNCSPWISHFHVDKERLVRKRLTIQAVIEKLETNYGSRRKKSGKVQLPKVHIRSQ 3418
T+ SPW+ HFHV +E ++ L ++I+ L S R +S K+ LP + I S+
Sbjct: 1014 QNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAES-KINLPDLQITSK 1072
Query: 3419 CCSFLDEEGKNDKTCCITVAVSDN---CITLETIKDSVIPDILQTLIKGFLEFKKVDIIW 3589
C F+D E ++ CITV++ ++ CI L+T++D VIP +L ++KG L+ KKVDI+W
Sbjct: 1073 DC-FVDMEKEDSDCFCITVSIVNSKKSCIQLDTVRDLVIPFLLGAVVKGLLDVKKVDILW 1131
Query: 3590 GSQIDSN------GELFVKVTRSQSCHVETFWSNLTDACIPIMHLIDWERSHPDDICGVY 3751
DS+ G L+++V S C + FW L DAC+ IM +IDWERSHPD+I ++
Sbjct: 1132 NDNPDSDVLKSSSGRLYLRVYVSGDCGKKNFWGVLMDACLQIMDMIDWERSHPDNIHDIF 1191
Query: 3752 NVCGIEGAWKYLFRALKSTTSDIGRSIHQEHLLLVADCLTVSGKFHGLSARGLTVQRKSA 3931
V GI+ WKY +LKS SDIG+++ EHLLLVA CL+ +G+F GL+A+G+ Q++
Sbjct: 1192 VVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFVGLNAKGMARQKELT 1251
Query: 3932 SISSPFNQACFSNPRDRFINAAKQGSIDNLYGTVDALAWGKEATLGTGGPFEIIYSGKVH 4111
SISSPF Q CFS+P FI A K+ DNL+G++DALAWGK ++G+GG F+I+YS K H
Sbjct: 1252 SISSPFMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGKIPSVGSGGHFDILYSAKGH 1311
Query: 4112 NPKKSESIYETLNCMRSDKFHHDNRPAYRNITAKWKGKSKFAKAHSNTGYLGSNLMLNKV 4291
+ E IY+ L S H N IT + T G+ L+
Sbjct: 1312 ELARPEDIYKLLGSQTS--CHEQNLKVKVPIT-----------CYQTTTKCGAQLV---- 1354
Query: 4292 NLEGLWNEEFVKNPGDQANCHPELHASDKSELTTFGLNSSPNEGKICSWLDVVDMSSSLR 4471
+ C L KS L +F S D+ +S L+
Sbjct: 1355 ---------YANGDSASKGC-KSLEKISKSVLRSF-----------LSLNDIQKLSRRLK 1393
Query: 4472 AILNEYQMGASLTEGHKSLLMEALNYHPKREAKLGIGVQDIKIGHSLSHPDSRCFILFRE 4651
IL +Y + L+E K+ LM AL +HP+R+ K+G G Q+IK+ + + ++RCF L R
Sbjct: 1394 FILQKYPINHQLSEIDKTTLMMALYFHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRT 1453
Query: 4652 DGTKDDVSYHKCVIGAAKQISP 4717
DGT++D SYHKCV GA + I P
Sbjct: 1454 DGTEEDFSYHKCVHGALEIIDP 1475
>gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-8 [Zea
mays]
Length = 1444
Score = 1059 bits (2738), Expect = 0.0
Identities = 593/1401 (42%), Positives = 843/1401 (60%), Gaps = 23/1401 (1%)
Frame = +2
Query: 620 QLGCKYCTRNSTGWYPPLKFMILSE------------DIQGKKTFSVVAQINGKLPKKFR 763
Q CKY +++ + YP + F LS + + S+VA+ ++P + +
Sbjct: 115 QATCKYYSKDGSKLYPSIVFKTLSSPRVLLFKSKLHRNASVMERISIVAEAADRMPNRSK 174
Query: 764 NKCQTDVLPEDYWNFLPNLQHQ-GSNKNRVSLSPMQVRYLLKELDPEYIKRFVSRPELLF 940
K + LP D+W+F+P+ Q SN ++ LSP QV Y+LK+ DPE IK+FVSR ELLF
Sbjct: 175 GKGSLEGLPLDFWDFVPSENKQVQSNMTKIILSPYQVFYMLKKSDPELIKQFVSRRELLF 234
Query: 941 LSCLPVIPNSLRVMETSHVFSDGPRLYFDERSMALRKVVELNKKMDELRDYQHDGALLCS 1120
LSCLPV PN RV+E + DG RL FD+R+ A +++V++++++D+ R + H L S
Sbjct: 235 LSCLPVTPNCHRVVEIGYGLPDG-RLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLASS 293
Query: 1121 HITGPVLDCLHKSKLHNRPAAEVSATCKYGRKWLQDVVLGKRSDHSFRMVVVGDPKLRLG 1300
++ V +CL SKL+++ A ++T YG KWL+DVVL KRSD+ FR ++VGDPK++L
Sbjct: 294 LVSSRVSECLKSSKLYSKKADGETSTDTYGMKWLKDVVLSKRSDNVFRSIMVGDPKIKLW 353
Query: 1301 EIGIPSDICDKLFVAEHVNSYNLKKLNITCNSHLLTR-ELYARSKGKLKPLHKTGKLKVG 1477
EIGIP D+ L V+EHV+SYN + N+ CN HLL + EL+ R GKL L K +L++G
Sbjct: 354 EIGIPEDLSSSLVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQLEIG 413
Query: 1478 DFFYRPLEDGDIVLINRPPSIHQHSLIAMNVKILQSQPALAMNPLSCAPFAGDFDGDCLH 1657
D YRPL+DGDI+LINRPPS+HQHSLIA++ KIL +++NPL C PFAGDFDGDCLH
Sbjct: 414 DIAYRPLQDGDIILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLH 473
Query: 1658 GYVAQSELSRIELRELVSMESQLLNVQDGRXXXXXXXXXXXXAYLLTGRDVFLNKFEMQQ 1837
GY+ QS SR+EL ELVS+ +QLLN+QDGR A+LLT DVFL K E+QQ
Sbjct: 474 GYIPQSIRSRVELEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQ 533
Query: 1838 LEMLC-SYLAPCPAIVQSQEVP-PLWTGHQLLRALLSPCMYFGTESGTPENCGEEILSSD 2011
L+MLC S P PA+++S LWTG QL LL M F ++ E + S
Sbjct: 534 LQMLCLSVSTPAPAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIMDSEVLTCSL 593
Query: 2012 LSFWVKKTLPNFVSSMFKCYGKKALDLLFSAQEVLCEWISMRGFTVSLNDIYLSPDSYSR 2191
S W++ S MFK YG KALD L SAQEVLCE+++MRG +VSL+D+Y+ D YSR
Sbjct: 594 GSSWLQNNTSGLFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSR 653
Query: 2192 AKMIDEINYALEDAEDACVMKELIMDAEFESLRKCHNENEDALVCLDYDSSIHKPARLSQ 2371
K+ + + AL +AE+A +K++++D + KCH+E ED V I + +
Sbjct: 654 RKLAEGVKLALYEAEEAFRVKKILLDPINIPVLKCHDETED--VTYRQSDCIQSNPSVIR 711
Query: 2372 ASVDAFRDVFYELQYAIRPYIGRENSILSMINAGSQGNMQKLVQQSACLGLQLAPGSLSF 2551
+S+ AF+DVF +L ++ ++ +NS++ MINAGS+G+M K QQ+AC+GLQL F
Sbjct: 712 SSIMAFKDVFRDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASKFPF 771
Query: 2552 PMPDKLVHNLSNPRIEFHSCGMHQNSAGSATGQN-YAVIRSSFVDGLNPIECFDHAISIR 2728
+P +L N + + ++++ GQN YAVI++SF++GLNP+EC HAIS R
Sbjct: 772 RIPSQLSCISWNGQKSLNYEA--ESTSERVGGQNLYAVIKNSFIEGLNPLECLLHAISGR 829
Query: 2729 PSLFKENVAKSGSLARKLMFYMRDLYMAYDGTVRSAYGQQLVQFSYGASKEKFIESEESH 2908
+ F EN G+L RKLM+++RD+++AYDGTVRS+YGQQ+VQFSY S + ++
Sbjct: 830 ANFFSENADVPGTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSYD-SVDDLVDKL--- 885
Query: 2909 ELFSDGNIESNGVGGQPVXXXXXXXXXXXXXXXXDLPTNSLEPSPLMNLKKILECXXXXX 3088
G PV + P N LE SPLMNL+++ +C
Sbjct: 886 --------------GAPVGCRAACSISEAAYGALEHPVNGLEDSPLMNLQEVFKCHKATN 931
Query: 3089 XXXXXXXXXXXXXXERWLYGFEYGALEVKNHLDRVLFSDLLTNFMIFYDAYGEEGTNCSP 3268
+++ YG EY +LEVKNHL+RV FSDL+ MI YD + ++ N
Sbjct: 932 SGDHIGLLFLSRHLKKYRYGLEYASLEVKNHLERVNFSDLVETIMIIYDGH-DKIRNEGM 990
Query: 3269 WISHFHVDKERLVRKRLTIQAVIEKLETNYGSRRKKSGKVQLPKVHIRSQCCSFLDEEGK 3448
W +HFH++K + +KRL ++ V+++L Y + R + +P + I + C + +EG
Sbjct: 991 WTTHFHINKAMMKKKRLGLRFVVDELAKEYDTTRDQLNNA-IPSIRISRRKC-LVGDEGV 1048
Query: 3449 NDKTCCITV---AVSDNCITLETIKDSVIPDILQTLIKGFLEFKKVDIIWGSQIDSNGEL 3619
+CCI V A ++ L+TIK VIP IL TL+KGFLEFK V+I Q +GEL
Sbjct: 1049 KSSSCCIAVVAHAERNSISQLDTIKTRVIPSILDTLLKGFLEFKDVEI----QCPHDGEL 1104
Query: 3620 FVKVTRSQSCHVETFWSNLTDACIPIMHLIDWERSHPDDICGVYNVCGIEGAWKYLFRAL 3799
VKV S+ C FW L +ACIP+M LIDWE S P ++ ++ GI+ AWKY +L
Sbjct: 1105 LVKVCMSEHCKGGRFWPTLQNACIPVMELIDWELSQPSNVSDIFCSYGIDSAWKYFVESL 1164
Query: 3800 KSTTSDIGRSIHQEHLLLVADCLTVSGKFHGLSARGLTVQRKSASISSPFNQACFSNPRD 3979
KS T+D GR+I +EHLL++AD L+V+G+FH LS++GL QR SISSPF++ACFS P
Sbjct: 1165 KSATTDTGRNIRREHLLVIADSLSVTGQFHALSSQGLKQQRTRLSISSPFSEACFSRPAQ 1224
Query: 3980 RFINAAKQGSIDNLYGTVDALAWGKEATLGTGGPFEIIYSGKVHNPKKSESIYETL---N 4150
FINAAKQ S+DNL G++DA+AWGKE GT GPFEI++SGK H P+++ESIY+ L
Sbjct: 1225 SFINAAKQCSVDNLCGSLDAVAWGKEPFNGTSGPFEIMHSGKPHEPEQNESIYDFLCSSK 1284
Query: 4151 CMRSDKFHHDNRPAYRNITAKWKGKSKFAKAHSNTGYLGSNLMLNKVNLEGLWNEEFVKN 4330
+K H D R + + K +K + + + +++F
Sbjct: 1285 VRNFEKNHLDTRRQSTENASICRLACKSSKGSTTVNGVAITI-----------DQDF--- 1330
Query: 4331 PGDQANCHPELHASDKSELTTFGLNSSPNEGKICSWLDVVDMSSSLRAILNEYQMGASLT 4510
LHA K+ W +++DM +SL+ +L EY + +
Sbjct: 1331 ----------LHA------------------KVSIWDNIIDMRTSLQNMLREYPLNGYVA 1362
Query: 4511 EGHKSLLMEALNYHPKREAKLGIGVQDIKIGHSLSHPDSRCFILFREDGTKDDVSYHKCV 4690
E KS L+EAL +H + K+G+GV++IKIG + SHP +RCFIL R D T +D SYHKCV
Sbjct: 1363 EPDKSQLIEALKFHSRGAEKIGVGVREIKIGLNPSHPGTRCFILLRNDDTTEDFSYHKCV 1422
Query: 4691 IGAAKQISPEIGLWAENKLYR 4753
GAA ISP++G + + YR
Sbjct: 1423 QGAADSISPQLGSYLKKLYYR 1443
Score = 103 bits (258), Expect = 6e-19
Identities = 46/92 (50%), Positives = 63/92 (68%)
Frame = +2
Query: 62 PEGRLIHIEFDLLSGKEIERTCPVDVTVTSDLRSPKLGLPNVSSECATCGSRNTRECDGH 241
PE L I+FDL++ ++E+ + + SD+ SPKLGLPN S +C TCGS+ R+CDGH
Sbjct: 8 PEAILNAIKFDLMTSTDMEKLSSMSIIEVSDVTSPKLGLPNGSLQCETCGSQRGRDCDGH 67
Query: 242 FGVVKFPAIIYHPHLISEVVQILNTICPGCRS 337
FGV K A +++P+ I +VV LN ICPGC S
Sbjct: 68 FGVTKLAATVHNPYFIDDVVHFLNRICPGCLS 99
>ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
brachyantha]
Length = 1386
Score = 1034 bits (2674), Expect = 0.0
Identities = 582/1409 (41%), Positives = 838/1409 (59%), Gaps = 23/1409 (1%)
Frame = +2
Query: 599 RAGATQNQLGCKYCTRNSTGWYPPLKFMILSED---IQGKKT---------FSVVAQING 742
RA Q CKYC+++ YP + F +L+ + K S++A++
Sbjct: 31 RADGITIQATCKYCSKDGAKLYPSIIFKMLTSPRVTLSRSKLHRNTSVIDKMSIIAEVAS 90
Query: 743 KLPKKFRNKCQTDVLPEDYWNFLPNL-QHQGSNKNRVSLSPMQVRYLLKELDPEYIKRFV 919
++ +NK + LP D+W+F+P+ Q SN + LSP QV ++LK+LDPE I
Sbjct: 91 RVTHNSKNKAP-ETLPHDFWDFIPDENQPSQSNVTKKILSPYQVFHMLKKLDPELISHVT 149
Query: 920 SRPELLFLSCLPVIPNSLRVMETSHVFSDGPRLYFDERSMALRKVVELNKKMDELRDYQH 1099
R ELLFLSCLPV PN RV E + SDGPRL FD+R+ A +++V++++++D+ R +
Sbjct: 150 PRRELLFLSCLPVTPNCHRVAEMPYGHSDGPRLAFDDRTKAYKRMVDVSRRIDDYRQHPQ 209
Query: 1100 DGALLCSHITGPVLDCLHKSKLHNRPAAEVSATCK--YGRKWLQDVVLGKRSDHSFRMVV 1273
G S +T V++C+ SKL+ + + S+T YG KWL+D++L KRSD++FR ++
Sbjct: 210 FGVFASSVVTSRVMECMKSSKLYAKKSDGESSTSTDTYGTKWLKDIILSKRSDNAFRSIM 269
Query: 1274 VGDPKLRLGEIGIPSDICDKLFVAEHVNSYNLKKLNITCNSHLLTRE-LYARSKGKLKPL 1450
VGDPK+ L EIGIP D+ L V+E V+ YN + +N+ CN HLLT+E L R GKL +
Sbjct: 270 VGDPKISLNEIGIPMDLALNLVVSEQVSYYNFETINLKCNLHLLTKEVLLVRRNGKLIFV 329
Query: 1451 HKTGKLKVGDFFYRPLEDGDIVLINRPPSIHQHSLIAMNVKILQSQPALAMNPLSCAPFA 1630
K KL++GD YR L+DGD+VL+NRPPS+HQHSL+A++ K+L A+++NPL C PF
Sbjct: 330 RKANKLQIGDIAYRLLQDGDLVLVNRPPSVHQHSLVALSAKLLPVHSAVSINPLCCDPFK 389
Query: 1631 GDFDGDCLHGYVAQSELSRIELRELVSMESQLLNVQDGRXXXXXXXXXXXXAYLLTGRDV 1810
GDFDGDCLHGYV QS SR+EL ELV + QLLN QDGR A+ LT D+
Sbjct: 390 GDFDGDCLHGYVPQSIQSRVELEELVGLNRQLLNAQDGRSLVSLTHDSLAAAHQLTSADI 449
Query: 1811 FLNKFEMQQLEMLCSYLA--PCPAIVQSQEVP-PLWTGHQLLRALLSPCMYFGTESGTPE 1981
L K E QQL+MLCS ++ P P++++S PLWTG QL LL M +
Sbjct: 450 LLQKAEFQQLQMLCSSISSTPMPSVIKSANSQGPLWTGKQLFGLLLPSGMNISFDQNLHI 509
Query: 1982 NCGEEILSSDLSFWVKKTLPNFVSSMFKCYGKKALDLLFSAQEVLCEWISMRGFTVSLND 2161
E + S S W++ + S MFK YG+KAL L S Q+VLCE++++RG +VSL+D
Sbjct: 510 KDSEVLTCSSGSLWLQNNTSSLFSVMFKEYGRKALQFLSSTQDVLCEFLTIRGLSVSLSD 569
Query: 2162 IYLSPDSYSRAKMIDEINYALEDAEDACVMKELIMDAEFESLRKCHNENEDALVCLDYDS 2341
+YL D YSR K+ +E++ AL++AE+A +K+++++ K ++ +D
Sbjct: 570 LYLFSDHYSRRKLSEEVHLALDEAEEAFQIKQILLNPVSIPNLKYYDGADDLSNSYGQSD 629
Query: 2342 SIHKPARLSQASVDAFRDVFYELQYAIRPYIGRENSILSMINAGSQGNMQKLVQQSACLG 2521
+ ++S+ +F+ +F +L ++ ++ ++NS+++MIN+GS+G++ K VQQ+AC+G
Sbjct: 630 FTQASPSIIKSSITSFKSIFNDLLKMVQHHVSKDNSMMAMINSGSKGSIPKFVQQTACVG 689
Query: 2522 LQLAPGSLSFPMPDKLVHNLSNPRIEFHSCGMHQNSAGSATGQN-YAVIRSSFVDGLNPI 2698
LQL F +P ++ +S R + + + S GQ+ YAVIR+SF+DGLNP+
Sbjct: 690 LQLPASKFPFKIPS-ILSCVSWNRHKSLDYEITDYTIESMGGQSMYAVIRNSFLDGLNPL 748
Query: 2699 ECFDHAISIRPSLFKENVAKSGSLARKLMFYMRDLYMAYDGTVRSAYGQQLVQFSYGASK 2878
EC HAIS R + F EN G+L RKLM+++RD Y+AYDGTVRS+YGQQ+VQFSY S
Sbjct: 749 ECLLHAISGRANFFSENADVPGTLTRKLMYHLRDTYIAYDGTVRSSYGQQIVQFSYDTSD 808
Query: 2879 EKFIESEESHELFSDGNIESNGVGGQPVXXXXXXXXXXXXXXXXDLPTNSLEPSPLMNLK 3058
+IE H++ G G PV D P N LE SPLMNL+
Sbjct: 809 GMYIE----HDI--------EGEPGTPVGSWAACSISEAAYGALDHPVNGLEDSPLMNLQ 856
Query: 3059 KILECXXXXXXXXXXXXXXXXXXXERWLYGFEYGALEVKNHLDRVLFSDLLTNFMIFYDA 3238
++L+C ++ YGFEY +LEVK+HL+RV FSDL+ MI Y
Sbjct: 857 EVLKCHKGTNSVDHTGLLFLSKHLRKYRYGFEYASLEVKDHLERVDFSDLVDTVMILYGG 916
Query: 3239 YGEEGTNCSPWISHFHVDKERLVRKRLTIQAVIEKLETNYGSRRKKSGKVQLPKVHIRSQ 3418
+ + +PW++HFH+++E + KRL + V+ +L Y + RK+ +P V I S
Sbjct: 917 SDIQKSKGNPWVTHFHLNQEAMKIKRLGLGYVVRELIDQYNALRKQLNNT-IPSVCILSS 975
Query: 3419 CCSFLDEEGKNDKTCCITVAV---SDNCITLETIKDSVIPDILQTLIKGFLEFKKVDIIW 3589
CS + KN + CC+T+ V S++ L IK+ VIP IL TL+KGFLEFK V +
Sbjct: 976 KCSVGNGCVKN-QACCVTMVVQVESNSTSQLTIIKERVIPSILATLLKGFLEFKNVKV-- 1032
Query: 3590 GSQIDSNGELFVKVTRSQSCHVETFWSNLTDACIPIMHLIDWERSHPDDICGVYNVCGIE 3769
Q + EL V+V S+ C FW+ L +ACIPIM LIDWERS P+ + V+ GI+
Sbjct: 1033 --QCQQDSELVVRVDMSEHCKSGKFWATLQNACIPIMELIDWERSRPERLYDVFCSYGID 1090
Query: 3770 GAWKYLFRALKSTTSDIGRSIHQEHLLLVADCLTVSGKFHGLSARGLTVQRKSASISSPF 3949
AWK+ +L+STT IGR+I ++HLL+VADCL+VSG+FHGLS++GL QR S SISSPF
Sbjct: 1091 SAWKFFVESLRSTTDAIGRNIRRQHLLVVADCLSVSGQFHGLSSQGLKQQRTSLSISSPF 1150
Query: 3950 NQACFSNPRDRFINAAKQGSIDNLYGTVDALAWGKEATLGTGGPFEIIYSGKVHNPKKSE 4129
++ACFS P FINAAK+ S+D L GT+DA+AWGKE GT GPF+I+YSGK H K+ E
Sbjct: 1151 SEACFSRPAHSFINAAKKDSVDKLSGTLDAIAWGKEPCTGTSGPFKILYSGKSHETKQKE 1210
Query: 4130 SIYETLNCMRSDKFHHDNRPAYRNITAKWKGKSKFAKAHSNTGYLGSNLMLNKVNLEGLW 4309
+IY L+ F + +R T K SK+ A +N EG+
Sbjct: 1211 NIYNFLHNPEIQAFEKNLMDTHRKRTEK---TSKWRSA---------------LNSEGI- 1251
Query: 4310 NEEFVKNPGDQANCHPELHASDKSELTTFGLNSSPNEGKICSWLDVVDMSSSLRAILNEY 4489
N G + +N K+ W +++DM + L+ +L EY
Sbjct: 1252 ---TTINGG------------------SISVNQKFLGAKVGIWENIIDMRTCLQNMLREY 1290
Query: 4490 QMGASLTEGHKSLLMEALNYHPKREAKLGIGVQDIKIGHSLSHPDSRCFILFREDGTKDD 4669
+ +TE KS L+EAL +HP+ K+G G+++IKIG + HP+SRCFI+ R D T D
Sbjct: 1291 TLNDIVTEQDKSCLIEALKFHPRGFDKIGAGIREIKIGVNPGHPNSRCFIVLRNDDTTAD 1350
Query: 4670 VSYHKCVIGAAKQISPEIGLWAENKLYRR 4756
SY+KCV+GAA +SPE+G + E L R
Sbjct: 1351 FSYNKCVLGAANSVSPELGSYIEKILSNR 1379
>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
1-like [Cucumis sativus]
Length = 1469
Score = 992 bits (2565), Expect = 0.0
Identities = 565/1386 (40%), Positives = 814/1386 (58%), Gaps = 22/1386 (1%)
Frame = +2
Query: 626 GCKYCTRNSTGWYPPLKFMILSEDIQGKKTFSVVAQINGKLPKKFRNKCQTDVLPEDYWN 805
GC+YC + WYPP++F + + D+ K ++ ++ + KK++ + LP DYW+
Sbjct: 124 GCRYCFGSLKDWYPPMRFKLSTTDMFKKSM--IMVEVKENMSKKYQKRVAKGGLPSDYWD 181
Query: 806 FLPNLQHQGSN---KNRVSLSPMQVRYLLKELDPEYIKRFVSRPELLFLSCLPVIPNSLR 976
F+P + Q + NR L+ QV YLLK++DP+++K+FV + LFL+ PV PNS R
Sbjct: 182 FIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSHR 241
Query: 977 VMETSHVFSDGPRLYFDERSMALRKVVELNKKMDELRDYQHDGALLCSHITGPVLDCLHK 1156
V E +H FS+G RL FDER+ A +KVV+ +EL D + I + CL+
Sbjct: 242 VTEMAHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRVLDCLKISKAIYNIFVFCLNH 301
Query: 1157 SKLHNRPAAEVSATCKYGRKWLQDVVLGKRSDHSFRMVVVGDPKLRLGEIGIPSDICDKL 1336
+ + + +AT G +W++DVVLGKRSDH FRMVVVGDP + L EIGIP + ++L
Sbjct: 302 VNYYQKKIKD-TATSSSGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERL 360
Query: 1337 FVAEHVNSYNLKKLNITCNSHLLTR-ELYARSKGKLKPLHKTGKLKVGDFFYRPLEDGDI 1513
++EH++S+N+KKL+ +C HL+ + E+Y R +G+L + +L +GD YRPL DGDI
Sbjct: 361 QISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGDI 420
Query: 1514 VLINRPPSIHQHSLIAMNVKILQSQPALAMNPLSCAPFAGDFDGDCLHGYVAQSELSRIE 1693
VL+NRPPSIHQHSLIA++VK+L L++NPL C+PF GDFDGDCLHGYV QS +R+E
Sbjct: 421 VLVNRPPSIHQHSLIALSVKLLPVSAVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVE 480
Query: 1694 LRELVSMESQLLNVQDGRXXXXXXXXXXXXAYLLTGRDVFLNKFEMQQLEMLCSYLAPCP 1873
+RELVS++ QL N Q GR A+L+ V LN F+MQQL+ML + P
Sbjct: 481 VRELVSLDKQLTNGQSGRNLLSLSHDSLTAAHLILEDGVSLNLFQMQQLQMLTLHQLLPP 540
Query: 1874 AIVQSQEVPPL-WTGHQLLRALLSPCMYFGTESGTPENCGEEILSSDLSFWVKKTLPNFV 2050
AIV+S + WTG QL LL P + + S E++SS+ S+W++ + N
Sbjct: 541 AIVKSPLLRNCAWTGKQLFSILLPPDFDYSSPSHNVFIEKGELISSEGSYWLRDSGRNLF 600
Query: 2051 SSMFKCYGKKALDLLFSAQEVLCEWISMRGFTVSLNDIYLSPDSYSRAKMIDEINYALED 2230
++ + K LD L AQ VLCEW+S RG +VSL+D+YLS DSYS M+D+I L++
Sbjct: 601 QALIEHCEGKTLDYLRDAQGVLCEWLSTRGLSVSLSDLYLSVDSYSHENMMDDIFCGLQE 660
Query: 2231 AEDACVMKELIMDAEFESLRKCHNENEDALVCLDYDSSIH---KPARLSQASVDAFRDVF 2401
AE+ C +K+L++D+ E L ++E+ L+ + + I+ K A L+QASVDAF+ VF
Sbjct: 661 AEETCNLKQLMVDSHKEILIG-NDEDNQHLLSIAVERLIYEKQKSAALNQASVDAFKKVF 719
Query: 2402 YELQYAIRPYIGRENSILSMINAGSQGNMQKLVQQSACLGLQLAPGSLSFPMPDKLV--- 2572
++Q + Y G++NS+L+M AGS+GN+ KLVQ S CLGLQ + +LSF +P KL
Sbjct: 720 RDIQNLVYKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQHSLVTLSFSLPHKLSCAA 779
Query: 2573 -HNLSNPRIEFHSCGMHQNSAGSATGQNYAVIRSSFVDGLNPIECFDHAISIRPSLFKEN 2749
++ PR G+ + YAV+ +SF+ GLNP ECF H+++ R S F +N
Sbjct: 780 WNSQKMPRY-IQKDGLPDRTQSFIP---YAVVENSFLSGLNPFECFAHSVTNRDSSFSDN 835
Query: 2750 VAKSGSLARKLMFYMRDLYMAYDGTVRSAYGQQLVQFSYGASKEKFIESEESHELFSDGN 2929
G+L RKL F MRD+Y AYDGTVR+AYG QLVQF Y + ESE S+ N
Sbjct: 836 AEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFCYDIDRPTS-ESE------SENN 888
Query: 2930 IESNGVGGQPVXXXXXXXXXXXXXXXXDLPTNSLEPSPLMNLKKILECXXXXXXXXXXXX 3109
G+GG PV D P + LE SPL+NLK++LEC
Sbjct: 889 NRDRGIGGHPVGSLAACAISEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFS 948
Query: 3110 XXXXXXXERWLYGFEYGALEVKNHLDRVLFSDLLTNFMIFYDAYGEEGTNCSPWISHFHV 3289
+ YGFEYGAL VKNHL+RV+F D++++ MI + + SPW+ HFHV
Sbjct: 949 LFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSSVMIIFSPLPSRKKHFSPWVCHFHV 1008
Query: 3290 DKERLVRKRLTIQAVIEKLETNYGSRRKKSGKVQLPKVHIRSQCCSFLDEEGKNDKTCCI 3469
KE L ++RL + +VI L S R++ G++ LP + I +Q C D ++ T C+
Sbjct: 1009 CKEILKKRRLKMNSVIHSLNMRCDSMRQE-GRMNLPSLQIITQDCPLADSLTEDGDTVCL 1067
Query: 3470 TVAVSDNC----ITLETIKDSVIPDILQTLIKGFLEFKKVDIIWGSQID------SNGEL 3619
TV +++N + L+ I+D +I +L T+I+GF E +VDI W + S+GEL
Sbjct: 1068 TVTIAENTKNSFLQLDFIQDLLIHFLLGTVIRGFTEIDRVDITWNDRPKVPKPRCSHGEL 1127
Query: 3620 FVKVTRSQSCHVETFWSNLTDACIPIMHLIDWERSHPDDICGVYNVCGIEGAWKYLFRAL 3799
+++VT S + FW+ L + C+PIM LIDW RSHPD+ + GI+ WKY +L
Sbjct: 1128 YLRVTMSGEGN-SRFWATLMNNCLPIMDLIDWTRSHPDNTHSLCLAYGIDSGWKYFLNSL 1186
Query: 3800 KSTTSDIGRSIHQEHLLLVADCLTVSGKFHGLSARGLTVQRKSASISSPFNQACFSNPRD 3979
+S T D+G++I EHLLLV++ L+ +G+F GL+ +GLT QR+ A + +PF QACFS+P
Sbjct: 1187 ESATLDVGKTIRLEHLLLVSNSLSATGEFVGLNVKGLTHQREHALVKTPFMQACFSSPGA 1246
Query: 3980 RFINAAKQGSIDNLYGTVDALAWGKEATLGTGGPFEIIYSGKVHNPKKSESIYETLNCMR 4159
I AAK G DNL G++DALAWG+ +LGTGG F+I+YSGK H K +Y L
Sbjct: 1247 CMIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDILYSGKGHELNKPVDVYNLLG--- 1303
Query: 4160 SDKFHHDNRPAYRNITAKWKGKSKFAKAHSNTGYLGSNLMLNKVNLEGLWNEEFVKNPGD 4339
G+S K ++ L N + K + + + +KN G
Sbjct: 1304 --------------------GQSTCEKQNTKIESLDKNTISEKYSAQLM-----LKNGGS 1338
Query: 4340 QANCHPELHASDKSELTTFGLNSSPNEGKICSWLDVVDMSSSLRAILNEYQMGASLTEGH 4519
L + KS L K + D+ +S +LR IL++Y + L E
Sbjct: 1339 TIKGLKRLDSVSKSILR-----------KFLTLNDIQKLSFALRTILHKYSLNERLNEVD 1387
Query: 4520 KSLLMEALNYHPKREAKLGIGVQDIKIGHSLSHPDSRCFILFREDGTKDDVSYHKCVIGA 4699
KS LM AL +HP R+ K+G+G QDIK+G + ++RCF+L R DGT +D SYHKCV+GA
Sbjct: 1388 KSTLMMALYFHPHRDEKIGVGAQDIKVGSHSKYQNTRCFVLIRSDGTTEDFSYHKCVLGA 1447
Query: 4700 AKQISP 4717
+ I+P
Sbjct: 1448 LEIIAP 1453
Score = 108 bits (269), Expect = 3e-20
Identities = 45/100 (45%), Positives = 67/100 (67%)
Frame = +2
Query: 50 EQMVPEGRLIHIEFDLLSGKEIERTCPVDVTVTSDLRSPKLGLPNVSSECATCGSRNTRE 229
E +P G L I F + + ++IE + V +++ PKLGLPN S +C TCG+ + +
Sbjct: 8 ELPIPSGLLTGINFSVSNQQDIENIAVITVDAANEVSDPKLGLPNPSYQCTTCGASSLKF 67
Query: 230 CDGHFGVVKFPAIIYHPHLISEVVQILNTICPGCRSIKLE 349
C+GHFGV+KFP I HP+ +SEV Q+LN +CPGC+S++ E
Sbjct: 68 CEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSVRQE 107
>emb|CAH66955.1| OSIGBa0147H17.3 [Oryza sativa Indica Group]
Length = 1407
Score = 984 bits (2545), Expect = 0.0
Identities = 568/1408 (40%), Positives = 817/1408 (58%), Gaps = 22/1408 (1%)
Frame = +2
Query: 599 RAGATQNQLGCKYCTRNSTGWYPPLKFMILSE------------DIQGKKTFSVVAQING 742
+A T Q CKYC+++ + YP + F +L+ + S++A++ G
Sbjct: 111 KADGTTIQGTCKYCSKDGSKLYPSIIFKMLTSPRVTLSRSKLHRNTSVMDKMSIIAEVAG 170
Query: 743 KLPKKFRNKCQTDVLPEDYWNFLPN-LQHQGSNKNRVSLSPMQVRYLLKELDPEYIKRFV 919
+ K +NK + LP+D+W+F+P+ Q N + LSP QV ++LK+LDPE I +
Sbjct: 171 GVAHKSKNKAPHETLPQDFWDFIPDDNQPPIFNVTKKILSPYQVFHMLKKLDPELINQVT 230
Query: 920 SRPELLFLSCLPVIPNSLRVMETSHVFSDGPRLYFDERSMALRKVVEL-NKKMDELRDYQ 1096
R ELLFLSCLPV PN RV E + SDGPRL FD+R+ A +++V+L +KK D+
Sbjct: 231 RRRELLFLSCLPVTPNCHRVAEMPYGHSDGPRLAFDDRTKAYKRMVDLYSKKSDD----- 285
Query: 1097 HDGALLCSHITGPVLDCLHKSKLHNRPAAEVSATCKYGRKWLQDVVLGKRSDHSFRMVVV 1276
++T YG KWL+D++L KRSD++FR ++V
Sbjct: 286 ----------------------------ESSASTDTYGIKWLKDIILSKRSDNAFRSIMV 317
Query: 1277 GDPKLRLGEIGIPSDICDKLFVAEHVNSYNLKKLNITCNSHLLTRE-LYARSKGKLKPLH 1453
GDPK+ L EIGIP + L V+E V+SYN + +N+ CN HLLT+E L R G L +
Sbjct: 318 GDPKINLNEIGIPMGLALNLVVSEQVSSYNFETINLKCNLHLLTKEVLLVRRNGNLIFVR 377
Query: 1454 KTGKLKVGDFFYRPLEDGDIVLINRPPSIHQHSLIAMNVKILQSQPALAMNPLSCAPFAG 1633
K +L++GD YR L+DGD+VL+NRPPS+HQHSLIA++ K+L +Q A+++NPL C PF G
Sbjct: 378 KANQLEIGDIAYRLLQDGDLVLVNRPPSVHQHSLIALSAKLLSTQSAVSINPLCCDPFKG 437
Query: 1634 DFDGDCLHGYVAQSELSRIELRELVSMESQLLNVQDGRXXXXXXXXXXXXAYLLTGRDVF 1813
DFDGDCLHGY+ Q SRIEL ELVS+ QLLN QDGR A+ LT DVF
Sbjct: 438 DFDGDCLHGYIPQCLQSRIELEELVSLSGQLLNQQDGRSLVSLTHDSLAAAHQLTNADVF 497
Query: 1814 LNKFEMQQLEMLCSY--LAPCPAIVQSQEVP-PLWTGHQLLRALLSPCMYFGTESGTPEN 1984
L K E QQL+ML S L P P++ +S PLWTG QL LL M +
Sbjct: 498 LEKAEFQQLQMLSSSISLTPMPSVFKSTNSQGPLWTGKQLFGMLLPYGMNISFDQKLHIK 557
Query: 1985 CGEEILSSDLSFWVKKTLPNFVSSMFKCYGKKALDLLFSAQEVLCEWISMRGFTVSLNDI 2164
E + S SFW++ + S MFK YG KAL+ L S Q+VLCE+++M G +VSL+D+
Sbjct: 558 DSEVLTCSSGSFWLQNNTSSLFSVMFKEYGCKALEFLSSTQDVLCEFLTMWGLSVSLSDL 617
Query: 2165 YLSPDSYSRAKMIDEINYALEDAEDACVMKELIMDAEFESLRKCHNENEDALVCLDYDSS 2344
YL D YSR K+ +E++ AL++AE+A +K++++++ K ++ +D +
Sbjct: 618 YLFSDHYSRRKLSEEVHLALDEAEEAFQIKQILLNSVSIPNLKYYDGGDDRSNTDEQSGF 677
Query: 2345 IHKPARLSQASVDAFRDVFYELQYAIRPYIGRENSILSMINAGSQGNMQKLVQQSACLGL 2524
+ ++S+ +F+ VF +L ++ Y+ ++NS+++MIN+GS+G++ K VQQ+AC+GL
Sbjct: 678 TQVSLPIIRSSMTSFKSVFNDLLKMVQQYVSKDNSMMTMINSGSKGSVLKFVQQTACVGL 737
Query: 2525 QLAPGSLSFPMPDKLVHNLSNPRIEFHSCGMHQNSAGSATGQN-YAVIRSSFVDGLNPIE 2701
QL F +P +L +S R + +C + ++ GQ+ YAVIR+SF+DGLNP+E
Sbjct: 738 QLPASKFPFRIPSQL-SCVSWNRHKSLNCEITDGTSECVGGQDMYAVIRNSFLDGLNPLE 796
Query: 2702 CFDHAISIRPSLFKENVAKSGSLARKLMFYMRDLYMAYDGTVRSAYGQQLVQFSYGASKE 2881
C HAIS R + F EN G+L RKLM+++RD Y+AYDGTVRS+YGQQ+V+FSY
Sbjct: 797 CLLHAISGRANFFSENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYGQQIVRFSY----- 851
Query: 2882 KFIESEESHELFSDGNIESNGVGGQPVXXXXXXXXXXXXXXXXDLPTNSLEPSPLMNLKK 3061
+ + ++SD ++E V PV D P NSLE SPLMNL++
Sbjct: 852 -----DTADGMYSDHDLEGEPVA--PVGSWAACSISEAAYGALDHPVNSLEDSPLMNLQE 904
Query: 3062 ILECXXXXXXXXXXXXXXXXXXXERWLYGFEYGALEVKNHLDRVLFSDLLTNFMIFYDAY 3241
+L+C ++ YGFEY +LEVK+HL+RV FSD+
Sbjct: 905 VLKCHKGTNSLDHTGLLFLSKHLRKYRYGFEYASLEVKDHLERVDFSDM----------- 953
Query: 3242 GEEGTNCSPWISHFHVDKERLVRKRLTIQAVIEKLETNYGSRRKKSGKVQLPKVHIRSQC 3421
VD E + KRL ++ ++ ++ Y + RK+ +P V I +
Sbjct: 954 ---------------VDTETMKIKRLGLEFIVREIIDQYNTLRKQLNNA-IPSVSISNSK 997
Query: 3422 CSFLDEEGKNDKTCCITVAVS---DNCITLETIKDSVIPDILQTLIKGFLEFKKVDIIWG 3592
CS +E KN +TCC+++ V ++ L+ IK+ VIP IL TL+KGFLEFK V +
Sbjct: 998 CSVGNECVKN-QTCCVSMVVQVEINSMSQLDVIKERVIPSILATLLKGFLEFKNVKV--- 1053
Query: 3593 SQIDSNGELFVKVTRSQSCHVETFWSNLTDACIPIMHLIDWERSHPDDICGVYNVCGIEG 3772
Q + EL +KV S+ C FW+ L +ACIPIM LIDWERS P+ + + GI+
Sbjct: 1054 -QCQEDNELVLKVGMSEHCKSGKFWATLQNACIPIMELIDWERSRPERVYDNFCSYGIDS 1112
Query: 3773 AWKYLFRALKSTTSDIGRSIHQEHLLLVADCLTVSGKFHGLSARGLTVQRKSASISSPFN 3952
AWK+ +L+STT IGR+IH++HLL+VADCL+VSG+FHGLS++GL QR SISSPF+
Sbjct: 1113 AWKFFVESLRSTTDAIGRNIHRQHLLVVADCLSVSGQFHGLSSQGLKQQRTWLSISSPFS 1172
Query: 3953 QACFSNPRDRFINAAKQGSIDNLYGTVDALAWGKEATLGTGGPFEIIYSGKVHNPKKSES 4132
+ACFS P FINAAK+ S+DNL GT+DA+AWGKE G+ GPF+I+YSGK H K++E
Sbjct: 1173 EACFSRPAHSFINAAKRDSVDNLSGTLDAIAWGKEPCTGSSGPFKILYSGKSHETKQNEH 1232
Query: 4133 IYETLNCMRSDKFHHDNRPAYRNITAKWKGKSKFAKAHSNTGYLGSNLMLNKVNLEGLWN 4312
IY+ L+ + YR T K + + N G + +N
Sbjct: 1233 IYDFLHNPEVQALEKNVMDTYRKRTEKTSKRRSALNSEGNATINGGAIS---------FN 1283
Query: 4313 EEFVKNPGDQANCHPELHASDKSELTTFGLNSSPNEGKICSWLDVVDMSSSLRAILNEYQ 4492
++F LNS K+ W +++DM +SL+ +L EY
Sbjct: 1284 QKF--------------------------LNS-----KVGIWENIIDMRTSLQNMLREYT 1312
Query: 4493 MGASLTEGHKSLLMEALNYHPKREAKLGIGVQDIKIGHSLSHPDSRCFILFREDGTKDDV 4672
+ +TE KS L+EAL +HP+ K+G+G+++IKIG + HP SRCFI+ R D T D
Sbjct: 1313 LNEVVTEQDKSCLIEALKFHPRGYDKIGVGIREIKIGVNPGHPSSRCFIVLRNDDTTADF 1372
Query: 4673 SYHKCVIGAAKQISPEIGLWAENKLYRR 4756
SY+KCV+GAA ISPE+G + EN+ R
Sbjct: 1373 SYNKCVLGAANSISPELGSYIENRRSNR 1400
Score = 100 bits (248), Expect = 9e-18
Identities = 43/94 (45%), Positives = 64/94 (68%)
Frame = +2
Query: 62 PEGRLIHIEFDLLSGKEIERTCPVDVTVTSDLRSPKLGLPNVSSECATCGSRNTRECDGH 241
P L I+F L++ ++E+ + D+ + KLGLPN + +CATCGSR+ R+CDGH
Sbjct: 11 PVAELNAIKFSLMTSSDMEKLSSATIIEMCDVTNAKLGLPNGAPQCATCGSRSIRDCDGH 70
Query: 242 FGVVKFPAIIYHPHLISEVVQILNTICPGCRSIK 343
FGV+K A +++ + I EVVQ+LN ICPGC ++K
Sbjct: 71 FGVIKLAATVHNSYFIEEVVQLLNQICPGCLTLK 104
>ref|XP_004970758.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X5
[Setaria italica]
Length = 1181
Score = 968 bits (2502), Expect = 0.0
Identities = 540/1245 (43%), Positives = 755/1245 (60%), Gaps = 10/1245 (0%)
Frame = +2
Query: 1052 VVELNKKMDELRDYQHDGALLCSHITGPVLDCLHKSKLHNRPAAEVSATCKYGRKWLQDV 1231
+V+++K++D+ R + L S ++ V +CL SKL+++ ++T YG KWL+D
Sbjct: 1 MVDVSKRIDDYRQHPQFSVLASSLVSSRVSECLKSSKLYSKKTDVETSTDTYGMKWLKDA 60
Query: 1232 VLGKRSDHSFRMVVVGDPKLRLGEIGIPSDICDKLFVAEHVNSYNLKKLNITCNSHLLTR 1411
VL KRSD++FR ++VGDPK+RL EIGIP ++ L V+EHV+SYNL+ +N+ CN HLL +
Sbjct: 61 VLSKRSDNAFRSIMVGDPKIRLWEIGIPENLASNLVVSEHVSSYNLENINLKCNLHLLAK 120
Query: 1412 E-LYARSKGKLKPLHKTGKLKVGDFFYRPLEDGDIVLINRPPSIHQHSLIAMNVKILQSQ 1588
E L R GKL + K +L+VGD YRPL+DGD++LINRPPS+HQHSLIA++ KIL Q
Sbjct: 121 EELLIRRNGKLMFIRKANQLEVGDIAYRPLQDGDLILINRPPSVHQHSLIALSTKILPIQ 180
Query: 1589 PALAMNPLSCAPFAGDFDGDCLHGYVAQSELSRIELRELVSMESQLLNVQDGRXXXXXXX 1768
+++NPL C PF GDFDGDCLHGY+ QS SRIEL ELVS+ QLLN+QDGR
Sbjct: 181 SVVSINPLCCMPFLGDFDGDCLHGYIPQSIRSRIELGELVSLHQQLLNMQDGRSLVSLTH 240
Query: 1769 XXXXXAYLLTGRDVFLNKFEMQQLEMLCSYLA--PCPAIVQSQEVP-PLWTGHQLLRALL 1939
A+LLT DVFL + E+QQL+MLC ++ P PAI++S LWTG Q LL
Sbjct: 241 DSLAAAHLLTSTDVFLKESELQQLQMLCLSVSTTPVPAIIKSMNFEGSLWTGKQFFSMLL 300
Query: 1940 SPCMYFGTESGTPENCGEEILSSDLSFWVKKTLPNFVSSMFKCYGKKALDLLFSAQEVLC 2119
M F +S E + S S W++ + S MFK YG+KALD L SAQEVLC
Sbjct: 301 PSGMNFSCDSKLHIIDSEVLTCSSGSSWLQNSTTGLFSIMFKQYGRKALDFLSSAQEVLC 360
Query: 2120 EWISMRGFTVSLNDIYLSPDSYSRAKMIDEINYALEDAEDACVMKELIMDAEFESLRKCH 2299
E+++MRG +VSL+D+Y+ D YSR K+ + AL++AE+A +K++++D + KCH
Sbjct: 361 EFLTMRGLSVSLSDLYMFSDHYSRRKLTQGVKLALDEAEEAFRIKQILLDPINIPVLKCH 420
Query: 2300 NENEDALVCLDYDSSIHKPARLS--QASVDAFRDVFYELQYAIRPYIGRENSILSMINAG 2473
+E ED + Y S + + LS ++S+ +F+DVF +L ++ ++ +NS++ MINAG
Sbjct: 421 DETED----VTYRQSDYIQSNLSVVRSSIMSFKDVFNDLLKMVQHHVSNDNSMMVMINAG 476
Query: 2474 SQGNMQKLVQQSACLGLQLAPGSLSFPMPDKLVHNLSNPRIEFHSCGMHQNSAGSATGQN 2653
S+G+M K VQQ+AC+GLQL F +P +L +S R + +C S GQN
Sbjct: 477 SKGSMLKYVQQTACVGLQLPASKFPFRIPSQL-SCVSWNRQKSLNCEAESTSE-HVEGQN 534
Query: 2654 -YAVIRSSFVDGLNPIECFDHAISIRPSLFKENVAKSGSLARKLMFYMRDLYMAYDGTVR 2830
YAVIR+SF++GLNP+EC HAIS R + F E+ G+L RKLM+++RDL++AYDGTVR
Sbjct: 535 LYAVIRNSFIEGLNPLECLLHAISGRANFFSEHADVPGTLTRKLMYHLRDLHVAYDGTVR 594
Query: 2831 SAYGQQLVQFSYGASKEKFIESEESHELFSDGNIESNGVGGQPVXXXXXXXXXXXXXXXX 3010
S+YGQ ++QFSY + + + EL G PV
Sbjct: 595 SSYGQHIMQFSYDTADDMCCNHDLVGEL------------GAPVGSWAACSISEAAYGAL 642
Query: 3011 DLPTNSLEPSPLMNLKKILECXXXXXXXXXXXXXXXXXXXERWLYGFEYGALEVKNHLDR 3190
D P N LE SPLMNL+++ +C +++ Y EY +LEVKNHL+R
Sbjct: 643 DHPVNGLEDSPLMNLQEVFKCHKATNSGDHVGLLFLSKHLKKYRYSLEYASLEVKNHLER 702
Query: 3191 VLFSDLLTNFMIFYDAYGEEGTNCSPWISHFHVDKERLVRKRLTIQAVIEKLETNYGSRR 3370
V FSDL+ MI YD ++ PW +HFH+ KE + +KRL + V+E+L Y + R
Sbjct: 703 VNFSDLVETIMIIYDGC-DKTRKGGPWTTHFHISKEMMKKKRLGLGFVVEELTKEYDATR 761
Query: 3371 KKSGKVQLPKVHIRSQCCSFLDEEGKNDKTCCITV---AVSDNCITLETIKDSVIPDILQ 3541
+ +P VHI + CS D+ +N CCIT+ A S++ L+TIK VIP IL
Sbjct: 762 NQLNNA-IPSVHISKRKCSVGDQCVQNS-ACCITLVAQAESNSMSQLDTIKKRVIPSILD 819
Query: 3542 TLIKGFLEFKKVDIIWGSQIDSNGELFVKVTRSQSCHVETFWSNLTDACIPIMHLIDWER 3721
TL+KGFLEFK V+I Q +GEL VKV S+ C FW+ L +ACIP+M LIDWE+
Sbjct: 820 TLLKGFLEFKDVEI----QCRHDGELLVKVGMSEHCKAGRFWATLQNACIPVMELIDWEQ 875
Query: 3722 SHPDDICGVYNVCGIEGAWKYLFRALKSTTSDIGRSIHQEHLLLVADCLTVSGKFHGLSA 3901
S P ++ ++ GI+ AWK +LKS TSDIGR++ +EHLL+VAD L+V+G+F LS+
Sbjct: 876 SQPKNVYDIFCSYGIDSAWKCFVESLKSVTSDIGRNVRREHLLIVADSLSVTGQFQALSS 935
Query: 3902 RGLTVQRKSASISSPFNQACFSNPRDRFINAAKQGSIDNLYGTVDALAWGKEATLGTGGP 4081
+GL QR SISSPF++ACFS P FINAAK S+DNL G++DA+AWGKE GT GP
Sbjct: 936 QGLNQQRSRLSISSPFSEACFSRPARSFINAAKHCSVDNLCGSLDAIAWGKEPFNGTSGP 995
Query: 4082 FEIIYSGKVHNPKKSESIYETLNCMRSDKFHHDNRPAYRNITAKWKGKSKFAKAHSNTGY 4261
FEI+++GK H P+++ESIY+ L F D+ R T K+ +
Sbjct: 996 FEIMHAGKPHEPEQNESIYDFLRSPEVRNFEKDHMDTCRQSTENALRCRLACKSKDSATV 1055
Query: 4262 LGSNLMLNKVNLEGLWNEEFVKNPGDQANCHPELHASDKSELTTFGLNSSPNEGKICSWL 4441
G + + DQ H K+ W
Sbjct: 1056 QGGAMTI------------------DQGFLH----------------------AKVGIWD 1075
Query: 4442 DVVDMSSSLRAILNEYQMGASLTEGHKSLLMEALNYHPKREAKLGIGVQDIKIGHSLSHP 4621
+++DM +SL+ +L EY + + E KS L+EAL +HP K+G+GV++IKIG + SHP
Sbjct: 1076 NIIDMRTSLQNMLREYPLNGFVKETDKSQLVEALKFHPNGAQKIGVGVREIKIGLNPSHP 1135
Query: 4622 DSRCFILFREDGTKDDVSYHKCVIGAAKQISPEIGLWAENKLYRR 4756
+RCFIL R+DGT +D SY+KCV GAA ISP++G + E KL+RR
Sbjct: 1136 GTRCFILLRKDGTTEDFSYNKCVQGAANSISPQLGSYFEKKLHRR 1180
>gb|EOY24612.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
cacao]
Length = 1484
Score = 965 bits (2495), Expect = 0.0
Identities = 568/1416 (40%), Positives = 820/1416 (57%), Gaps = 37/1416 (2%)
Frame = +2
Query: 626 GCKYCTRNSTGWYPPLKFMILSEDIQGKKTFSVVAQINGKLPKKFRNKCQTDVLPEDYWN 805
GCKYC NS WYPP+ F I S+D+ K +++ +++ K K R + + LP DYW+
Sbjct: 127 GCKYCVGNSIDWYPPMNFKISSKDLFRKS--AIIVEVSEKSSMKVRKRGK-QALPSDYWD 183
Query: 806 FLPNLQHQGSN---KNRVSLSPMQVRYLLKELDPEYIKRFVSRPELLFLSCLPVIPNSLR 976
F+P + Q + NR LS QVRYLLK++DPE+IK+FV + +FL+C PV PNS R
Sbjct: 184 FIPKDEQQEESLIRPNRRVLSHSQVRYLLKDVDPEFIKKFVLSMDSIFLNCFPVTPNSHR 243
Query: 977 VMETSHVFSDGPRLYFDERSMALRKVVELNKKMDELRDYQHDGALLCSHITGPVLDCLHK 1156
V E H S+G RL FD+R+ +K+ + +EL + VL+CL
Sbjct: 244 VTEIMHASSNGQRLIFDQRTRVYKKLADFRGIANELSSH--------------VLECLKI 289
Query: 1157 SKLH-----NRPAAEV--------SATCKYGRKWLQDVVLGKRSDHSFRMVVVGDPKLRL 1297
SKLH N +A V SA+ G ++++DV+LGKR+DH FRMV+ G+P L+L
Sbjct: 290 SKLHLEKPSNEESALVLAQKRNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKL 349
Query: 1298 GEIGIPSDICDKLFVAEHVNSYNLKKLNITCNSHLLTR-ELYARSKGKLKPLHKTGKLKV 1474
EI IP + ++L +AE +N++N ++L C+ LL + E++ R +G+L + KL+V
Sbjct: 350 SEISIPCHVAERLQIAEQLNNWNEERLKACCDLRLLEKGEIHVRREGRLVRIRHNEKLQV 409
Query: 1475 GDFFYRPLEDGDIVLINRPPSIHQHSLIAMNVKILQSQPALAMNPLSCAPFAGDFDGDCL 1654
GD +RPL +GDI+LINRPPSIHQHSLIA++VK+L +++NPL C+PF GDFDGDCL
Sbjct: 410 GDTIFRPLNNGDIILINRPPSIHQHSLIALSVKVLPVSSVVSINPLICSPFRGDFDGDCL 469
Query: 1655 HGYVAQSELSRIELRELVSMESQLLNVQDGRXXXXXXXXXXXXAYLLTGRDVFLNKFEMQ 1834
HGYV QS +R+EL ELVS+ QL+N Q GR AYL+ V LN F+MQ
Sbjct: 470 HGYVPQSIKARVELIELVSLNRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQ 529
Query: 1835 QLEMLCSYLAPCPAIVQSQEV-PPLWTGHQLLRALLSPCM--YFGTESGTPENCGEEILS 2005
QLEM C +P PAIV++ + +WTG QLL ++L P Y T + GE I S
Sbjct: 530 QLEMFCPNHSPFPAIVKAPLLRSSVWTGKQLL-SMLFPLEFDYDFTPNDVVIRNGELISS 588
Query: 2006 SDLSFWVKKTLPNFVSSMFKCYGKKALDLLFSAQEVLCEWISMRGFTVSLNDIYLSPDSY 2185
S+ S W++ N S+ K Y K LD L++AQEVLCEW+SMRG +VSL+D+YLS DS
Sbjct: 589 SEGSTWLRDADGNLFQSLIKHYQGKVLDFLYAAQEVLCEWLSMRGLSVSLSDLYLSSDSN 648
Query: 2186 SRAKMIDEINYALEDAEDACVMKELIMDAEFESLRKCHNENEDALVCLDYDSSIHKPAR- 2362
S+ M+DEI L++ E C K+L++D+ + L H+E D+ + LD + ++ R
Sbjct: 649 SQKNMMDEIFCGLQEIEQTCNFKQLMVDSNHDFLVG-HDEEVDSFMALDVEQMCYEKQRS 707
Query: 2363 --LSQASVDAFRDVFYELQYAIRPYIGRENSILSMINAGSQGNMQKLVQQSACLGLQLAP 2536
LSQASVD+F+ VF ++Q + Y ++NS+L+M AGS+GN+ KLVQ S CLGLQ +
Sbjct: 708 AALSQASVDSFKQVFRDIQNLLYKYANKDNSLLTMFKAGSKGNLLKLVQHSLCLGLQHSL 767
Query: 2537 GSLSFPMPDKLVHNLSNPRIEFHSCGMHQNSAGSATGQ-NYAVIRSSFVDGLNPIECFDH 2713
LSF P +L N + ++A SA YAV+ SSF+ GLNP+E F H
Sbjct: 768 VPLSFRFPHQLSCAAWNNQKSHGLTQKVDDTAESAKNYIPYAVVESSFMTGLNPLESFVH 827
Query: 2714 AISIRPSLFKENVAKSGSLARKLMFYMRDLYMAYDGTVRSAYGQQLVQFSYGASKEKFIE 2893
+++ R S F +N G+L+R+LMF+MRDLY AYDGTVR++YG +VQF Y K+
Sbjct: 828 SVTSRDSSFSDNADLPGTLSRRLMFFMRDLYTAYDGTVRNSYGDLVVQFCYDIDKDASSP 887
Query: 2894 SEESHELFSDGNIESNGVGGQPVXXXXXXXXXXXXXXXXDLPTNSLEPSPLMNLKKILEC 3073
+ +H L S+ + G+GGQPV D P + LE SPL+NLK+++EC
Sbjct: 888 TSCAHGLISESSTIPEGIGGQPVGSLSACAISEAAYSALDQPVSLLETSPLLNLKRVVEC 947
Query: 3074 XXXXXXXXXXXXXXXXXXXERWLYGFEYGALEVKNHLDRVLFSDLLTNFMIFYDAYGEEG 3253
R +G EY ALEVKNHL+R+ FSD++T I +
Sbjct: 948 GSKRSNADQTMTLFLSNKLGRKRHGSEYAALEVKNHLERLTFSDIVTTVSIIFSPQMYRE 1007
Query: 3254 TNCSPWISHFHVDKERLVRKRLTIQAVIEKLETNYGSRRKKSGKVQLPKVHIRS--QCCS 3427
+ +PW+ HFHV K+ + R++L +Q++I+ L + + K K+ LP + I S + CS
Sbjct: 1008 NHFTPWVCHFHVCKDTMKRRQLKVQSIIDSLHMHC-TTAKTMWKISLPDMQITSNGRACS 1066
Query: 3428 FLDEEGKNDKTCCITVAVSD----NCITLETIKDSVIPDILQTLIKGFLEFKKVDIIWGS 3595
+D ++D T CITV + + + + L+ I+D VIP +L+ +IKGF E KKVDI+W
Sbjct: 1067 HIDMPNEDD-TFCITVTIVEYSKSSHMELDVIRDMVIPYLLEAVIKGFPEIKKVDILWKD 1125
Query: 3596 QI-------DSNGELFVKVTRSQSCHVETFWSNLTDACIPIMHLIDWERSHPDDICGVYN 3754
++ S GEL+++V S + W L + C+ IM +IDW RSHPD+I +
Sbjct: 1126 RLKVSKPHKSSCGELYLRVFVSGDFGITKLWGVLMNDCLQIMDMIDWTRSHPDNINQLCL 1185
Query: 3755 VCGIEGAWKYLFRALKSTTSDIGRSIHQEHLLLVADCLTVSGKFHGLSARGLTVQRKSAS 3934
GI+ WK+ LKS SD G++I EHLL+VA+CL+ +G+F GL+++GL QR+ A
Sbjct: 1186 AYGIDAGWKFFLNNLKSAISDTGKTILNEHLLVVANCLSATGEFVGLNSKGLRQQREHAY 1245
Query: 3935 ISSPFNQACFSNPRDRFINAAKQGSIDNLYGTVDALAWGKEATLGTGGPFEIIYSGKVHN 4114
+SSPF QACFSNP F+ AAK G+ D+L GT+DALAWG+ +GTGG F+IIYS K
Sbjct: 1246 VSSPFMQACFSNPSASFVKAAKTGASDDLQGTIDALAWGRIPHIGTGGQFDIIYSVKDQR 1305
Query: 4115 PKKSESIYETLNCMRSDKFHHDNRPAYRNITAKWKGKSKFAKAHSNTGYLGSNLMLNKVN 4294
+ +Y+ L S + K + + KA + +L+++ +
Sbjct: 1306 LAEPVDVYKLLGSSISSQ--------------KQDVEFEVPKALNFKSEKYGSLLIDALG 1351
Query: 4295 LEGLWNEEFVKNPGDQANCHPELHASDKSELTTFGLNSSPNEGKICSWLDVVDMSSSLRA 4474
+EE K + + EL D D+ +S +LR
Sbjct: 1352 DSA--SEELKKIETKRRSIWRELLTLD----------------------DIQRLSRALRN 1387
Query: 4475 ILNEYQMGASLTEGHKSLLMEALNYHPKREAKLGIGVQDIKIGHSLSHPDSRCFILFRED 4654
IL++Y + L+E + LM AL +HP+R+ K+G G Q+IK+G+ H ++RCF L R D
Sbjct: 1388 ILHKYPIDHRLSEADWNTLMMALYFHPRRDEKIGSGAQEIKVGYHPEHANARCFSLVRTD 1447
Query: 4655 GTKDDVSYHKCVIGAAKQISPEIGLWAENKLYRRFW 4762
GT D SYHKCV+GA + I+P K Y+ W
Sbjct: 1448 GTIVDFSYHKCVLGALEIIAPH-----RAKSYKSKW 1478
Score = 105 bits (261), Expect = 3e-19
Identities = 43/103 (41%), Positives = 69/103 (66%)
Frame = +2
Query: 53 QMVPEGRLIHIEFDLLSGKEIERTCPVDVTVTSDLRSPKLGLPNVSSECATCGSRNTREC 232
+ +P + I F++ + ++ E+ +++ S++ PKLG PN S+ C TCG+ + + C
Sbjct: 12 EQLPAAFVTGIRFNVSNDRDNEKMSVMEIAAPSEVSDPKLGFPNFSNHCTTCGAADMKHC 71
Query: 233 DGHFGVVKFPAIIYHPHLISEVVQILNTICPGCRSIKLEKRNK 361
+GHFGV+ FP I HP+ +SEVVQILN ICPGC+S++ + R K
Sbjct: 72 EGHFGVINFPYAILHPYFLSEVVQILNKICPGCKSVRKDLRIK 114
>ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citrus clementina]
gi|557542783|gb|ESR53761.1| hypothetical protein
CICLE_v10018489mg [Citrus clementina]
Length = 1443
Score = 924 bits (2387), Expect = 0.0
Identities = 556/1408 (39%), Positives = 795/1408 (56%), Gaps = 28/1408 (1%)
Frame = +2
Query: 629 CKYCTRNSTGWYPPLKFMILSEDIQGKKTFSVVAQINGKLPKKFRNKCQTDVLPEDYWNF 808
CKYC RN WYP ++F + S+D+ GK +++ +I+ KL KK + LP+DYW F
Sbjct: 124 CKYCVRNPAQWYPRMRFKLSSKDLSGKT--AIIVEIDEKLSKKNKK------LPDDYWGF 175
Query: 809 LPNLQHQGSNK---NRVSLSPMQVRYLLKELDPEYIKRFVSRPELLFLSCLPVIPNSLRV 979
+P Q N NR LS QV YLLK++DP + F+ + FL C PV PN+ RV
Sbjct: 176 IPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHRV 235
Query: 980 METSHVFSDGPRLYFDERSMALRKVVELNKKMDELRDYQHDGALLCSHITGPVLDCLHKS 1159
E H FS +L+FD + L+K+V+ + EL SH+ V DCL S
Sbjct: 236 TEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIEL-----------SHL---VQDCLKIS 281
Query: 1160 KLH-----NRPAAEV------SATCKYGRKWLQDVVLGKRSDHSFRMVVVGDPKLRLGEI 1306
KLH + +AEV + G +W++DVVLGKR+D FRMVV GDP ++L EI
Sbjct: 282 KLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEI 341
Query: 1307 GIPSDICDKLFVAEHVNSYNLKKLNITCNSHLLTR-ELYARSKGKLKPLHKTGKLKVGDF 1483
GIP + ++L ++E +NS+N ++L++ + LL + ELY KG L + + L++GD
Sbjct: 342 GIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGELYVCRKGGLVRIRRIDALELGDI 401
Query: 1484 FYRPLEDGDIVLINRPPSIHQHSLIAMNVKILQSQPALAMNPLSCAPFAGDFDGDCLHGY 1663
YRPL DGDIVLINRPPSIH HSLIA+ VK+L + +NPL C+PF GDFDGDCLHGY
Sbjct: 402 IYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGY 461
Query: 1664 VAQSELSRIELRELVSMESQLLNVQDGRXXXXXXXXXXXXAYLLTGRDVFLNKFEMQQLE 1843
+ Q+ +R+EL ELV+++ QL+N Q GR A+LL V L+ +MQQL+
Sbjct: 462 IPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDGVLLSHLQMQQLQ 521
Query: 1844 MLCSYLAPCPAIVQSQEVPPLWTGHQLLRALLSPCMYFGTESGTPENCGEEILSSDLSFW 2023
M C + P I + + +W+G QL LL P + S G +++S++ S W
Sbjct: 522 MFCPHRFLSPDIFKISK-DSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSW 580
Query: 2024 VKKTLPNFVSSMFKCYGKKALDLLFSAQEVLCEWISMRGFTVSLNDIYLSPDSYSRAKMI 2203
++ N + K Y K LD L++AQEVLCEW+S+RG TVSL+D+YL+ S SR ++
Sbjct: 581 LRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
Query: 2204 DEINYALEDAEDACVMKELIMDAEFESLRKCHN-ENEDALVCLDYDSSIHKPARLSQASV 2380
DEI Y L +A+D C ++L++D+ L + E+ +L + A LSQASV
Sbjct: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASV 700
Query: 2381 DAFRDVFYELQYAIRPYIGRENSILSMINAGSQGNMQKLVQQSACLGLQLAPGSLSFPMP 2560
DAF+ VF+++Q Y ++NS+L M AGS+GN+ KLVQ S CLGLQ + LSF P
Sbjct: 701 DAFKHVFWDIQNLAYKYGSKDNSLLGMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFP 760
Query: 2561 DKLVHNLSNPRIEFHSCGMHQNSAGSATGQNYAVIRSSFVDGLNPIECFDHAISIRPSLF 2740
H LS G + A S AV+ +SF+ GLNP+ECF H+++ R S F
Sbjct: 761 ----HELSCAAWNRLRAGDNTECAKSYIPS--AVVENSFLTGLNPLECFIHSVTSRDSSF 814
Query: 2741 KENVAKSGSLARKLMFYMRDLYMAYDGTVRSAYGQQLVQFSYGASKEKFIESEESHELFS 2920
+N G+L R+LMF+MRDL AYDGTVR+AYG Q+VQFSY
Sbjct: 815 SDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNI---------------- 858
Query: 2921 DGNIESNG-VGGQPVXXXXXXXXXXXXXXXXDLPTNSLEPSPLMNLKKILECXXXXXXXX 3097
+G G +G QPV D P + LE SPL+NLK +LEC
Sbjct: 859 EGTSTPTGEIGDQPVGSLSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKKSNAD 918
Query: 3098 XXXXXXXXXXXERWLYGFEYGALEVKNHLDRVLFSDLLTNFMIFYDAYGEEGTNCSPWIS 3277
+ +GFEYGALEVKNHL+ ++ SD+++ MI Y + SPWI
Sbjct: 919 QTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWIC 978
Query: 3278 HFHVDKERLVRKRLTIQAVIEKLETNYGSRRKKSGKVQLPKVHIRSQCCSFLDEEGKNDK 3457
HFHV KE + R L ++I+ L + R + K+ +P + I ++ CS ++ + + +
Sbjct: 979 HFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTEL-KISVPDMLISNKDCSSINMQKECND 1037
Query: 3458 TCCITVAVSDN----CITLETIKDSVIPDILQTLIKGFLEFKKVDIIWG-------SQID 3604
C+TV + +N I LETI+ V+P +L+T++KGF E KKVDI+W S D
Sbjct: 1038 AFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDD 1097
Query: 3605 SNGELFVKVTRSQSCHVETFWSNLTDACIPIMHLIDWERSHPDDICGVYNVCGIEGAWKY 3784
S GEL+++V+ S CH+ + WS L + C IM +IDW RSHPD+I GI+ ++
Sbjct: 1098 SFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQF 1157
Query: 3785 LFRALKSTTSDIGRSIHQEHLLLVADCLTVSGKFHGLSARGLTVQRKSASISSPFNQACF 3964
L+S SD G++I EHLL+VA+ L+ +G+F GL+A+GL +QRK +S+SSPF QA F
Sbjct: 1158 FLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFF 1217
Query: 3965 SNPRDRFINAAKQGSIDNLYGTVDALAWGKEATLGTGGPFEIIYSGKVHNPKKSESIYET 4144
SNP FI AAK G++DNL G+VDAL WGK ++GTGG F+IIYSG+ K +Y
Sbjct: 1218 SNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYNL 1277
Query: 4145 LNCMRSDKFHHDNRPAYRNITAKWKGKSKFAKAHSNTGYLGSNLMLNKVNLEGLWNEEFV 4324
L+ +++K K K KA +GL +++
Sbjct: 1278 LS---------------TPVSSKQNEKLKVCKA------------------QGLISDKCG 1304
Query: 4325 KNPGDQANCHPELHASDKSELTTFGLNSSPNEGKICSWLDVVDMSSSLRAILNEYQMGAS 4504
GD A L D ++ L S ++ DV+ +S++L+ IL++Y +G
Sbjct: 1305 AKFGDFA--FKGLGNLDFETISRGVLRKS------WTYNDVLRLSNALKKILHKYSIGQR 1356
Query: 4505 LTEGHKSLLMEALNYHPKREAKLGIGVQDIKIGHSLSHPDSRCFILFREDGTKDDVSYHK 4684
L+E K+ ++ AL +HP+R KLGI DI++ + H +SRCF L REDG+ +D SYHK
Sbjct: 1357 LSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSYHK 1416
Query: 4685 CVIGAAKQISPEIGLWAENKLYRRFWSK 4768
CVIGA + I+PE + ++YR W +
Sbjct: 1417 CVIGALEIIAPE-----KAEIYRAKWKR 1439
Score = 99.0 bits (245), Expect = 2e-17
Identities = 38/99 (38%), Positives = 70/99 (70%)
Frame = +2
Query: 59 VPEGRLIHIEFDLLSGKEIERTCPVDVTVTSDLRSPKLGLPNVSSECATCGSRNTRECDG 238
VP G L I + + E E+ +++ S++ +P+LGLPN ++EC++CG+++ + C+G
Sbjct: 12 VPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEG 71
Query: 239 HFGVVKFPAIIYHPHLISEVVQILNTICPGCRSIKLEKR 355
HFG +KFP I HP+ +S++ ++LN+ICP C++I+ E++
Sbjct: 72 HFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQ 110
>ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
[Citrus sinensis] gi|568847098|ref|XP_006477377.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
isoform X3 [Citrus sinensis]
gi|568847100|ref|XP_006477378.1| PREDICTED: DNA-directed
RNA polymerase IV subunit 1-like isoform X4 [Citrus
sinensis]
Length = 1443
Score = 921 bits (2380), Expect = 0.0
Identities = 555/1408 (39%), Positives = 795/1408 (56%), Gaps = 28/1408 (1%)
Frame = +2
Query: 629 CKYCTRNSTGWYPPLKFMILSEDIQGKKTFSVVAQINGKLPKKFRNKCQTDVLPEDYWNF 808
CKYC RN WYP ++F + S+D+ GK +++ +I+ K KK + LP+DYW F
Sbjct: 124 CKYCVRNPAQWYPRMRFKLSSKDLSGKT--AIIVEIDEKPSKKNKK------LPDDYWGF 175
Query: 809 LPNLQHQGSNK---NRVSLSPMQVRYLLKELDPEYIKRFVSRPELLFLSCLPVIPNSLRV 979
+P Q N NR LS QV YLLK++DP + F+ + FL C PV PN+ RV
Sbjct: 176 IPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHRV 235
Query: 980 METSHVFSDGPRLYFDERSMALRKVVELNKKMDELRDYQHDGALLCSHITGPVLDCLHKS 1159
E H FS +L+FD + L+K+V+ + EL SH+ V DCL S
Sbjct: 236 TEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIEL-----------SHL---VQDCLKIS 281
Query: 1160 KLH-----NRPAAEV------SATCKYGRKWLQDVVLGKRSDHSFRMVVVGDPKLRLGEI 1306
KLH + +AEV + G +W++DVVLGKR+D FRMVV GDP ++L EI
Sbjct: 282 KLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEI 341
Query: 1307 GIPSDICDKLFVAEHVNSYNLKKLNITCNSHLLTR-ELYARSKGKLKPLHKTGKLKVGDF 1483
GIP + ++L ++E +NS+N ++L++ + LL + ELY KG L + + L++GD
Sbjct: 342 GIPCHVAERLQISERLNSWNWERLSVCTSFRLLEKGELYVCRKGGLVRIRRIDALELGDI 401
Query: 1484 FYRPLEDGDIVLINRPPSIHQHSLIAMNVKILQSQPALAMNPLSCAPFAGDFDGDCLHGY 1663
YRPL DGDIVLINRPPSIH HSLIA+ VK+L + +NPL C+PF GDFDGDCLHGY
Sbjct: 402 IYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGY 461
Query: 1664 VAQSELSRIELRELVSMESQLLNVQDGRXXXXXXXXXXXXAYLLTGRDVFLNKFEMQQLE 1843
+ Q+ +R+EL ELV+++ QL+N Q GR A+LL V L+ +MQQL+
Sbjct: 462 IPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQ 521
Query: 1844 MLCSYLAPCPAIVQSQEVPPLWTGHQLLRALLSPCMYFGTESGTPENCGEEILSSDLSFW 2023
M C + P I + + +W+G QL LL P + S G +++S++ S W
Sbjct: 522 MFCPHRFLSPDIFKISK-DSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSW 580
Query: 2024 VKKTLPNFVSSMFKCYGKKALDLLFSAQEVLCEWISMRGFTVSLNDIYLSPDSYSRAKMI 2203
++ N + K Y K LD L++AQEVLCEW+S+RG TVSL+D+YL+ S SR ++
Sbjct: 581 LRDYEGNLFQYLIKRYQDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
Query: 2204 DEINYALEDAEDACVMKELIMDAEFESLRKCHN-ENEDALVCLDYDSSIHKPARLSQASV 2380
DEI Y L +A+D C ++L++D+ L + E+ +L + A LSQASV
Sbjct: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAEDSESTRSLQGEHLSYEKQRSAALSQASV 700
Query: 2381 DAFRDVFYELQYAIRPYIGRENSILSMINAGSQGNMQKLVQQSACLGLQLAPGSLSFPMP 2560
DAF+ VF+++Q Y ++NS+L+M AGS+GN+ KLVQ S CLGLQ + LSF P
Sbjct: 701 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFP 760
Query: 2561 DKLVHNLSNPRIEFHSCGMHQNSAGSATGQNYAVIRSSFVDGLNPIECFDHAISIRPSLF 2740
H LS G + A S AV+ +SF+ GLNP+ECF H+++ R S F
Sbjct: 761 ----HELSCAAWNRLRAGDNTECAKSYIPS--AVVANSFLTGLNPLECFIHSVTSRDSSF 814
Query: 2741 KENVAKSGSLARKLMFYMRDLYMAYDGTVRSAYGQQLVQFSYGASKEKFIESEESHELFS 2920
+N G+L R+LMF+MRDL AYDGTVR+AYG Q+VQFSY
Sbjct: 815 SDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNI---------------- 858
Query: 2921 DGNIESNG-VGGQPVXXXXXXXXXXXXXXXXDLPTNSLEPSPLMNLKKILECXXXXXXXX 3097
+G G +GGQ V D P + LE SPL+NLK +LEC
Sbjct: 859 EGTSTPTGEIGGQSVGSLSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKKSNAD 918
Query: 3098 XXXXXXXXXXXERWLYGFEYGALEVKNHLDRVLFSDLLTNFMIFYDAYGEEGTNCSPWIS 3277
+ +GFEYGALEVKNHL+ ++ SD+++ MI Y + SPWI
Sbjct: 919 QTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWIC 978
Query: 3278 HFHVDKERLVRKRLTIQAVIEKLETNYGSRRKKSGKVQLPKVHIRSQCCSFLDEEGKNDK 3457
HFHV KE + R L ++I+ L + R + K+ +P + I ++ CS ++ + + +
Sbjct: 979 HFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTEL-KISVPDMLISNKDCSSINMQKECND 1037
Query: 3458 TCCITVAVSDN----CITLETIKDSVIPDILQTLIKGFLEFKKVDIIWG-------SQID 3604
C+TV + +N I LETI+ V+P +L+T++KGF E KKVDI+W S D
Sbjct: 1038 AFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDD 1097
Query: 3605 SNGELFVKVTRSQSCHVETFWSNLTDACIPIMHLIDWERSHPDDICGVYNVCGIEGAWKY 3784
S GEL+++V+ S CH+ + WS L + C IM +IDW RSHPD+I GI+ ++
Sbjct: 1098 SFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQF 1157
Query: 3785 LFRALKSTTSDIGRSIHQEHLLLVADCLTVSGKFHGLSARGLTVQRKSASISSPFNQACF 3964
L+S SD G++I EHLL+VA+ L+ +G+F GL+A+GL +QRK +S+SSPF QA F
Sbjct: 1158 FLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFF 1217
Query: 3965 SNPRDRFINAAKQGSIDNLYGTVDALAWGKEATLGTGGPFEIIYSGKVHNPKKSESIYET 4144
SNP FI AAK G++DNL G+VDAL WGK ++GTGG F+IIYSG+ K +Y
Sbjct: 1218 SNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYNL 1277
Query: 4145 LNCMRSDKFHHDNRPAYRNITAKWKGKSKFAKAHSNTGYLGSNLMLNKVNLEGLWNEEFV 4324
L+ +++K K K KA +GL +++
Sbjct: 1278 LS---------------TPVSSKQNEKLKVCKA------------------QGLISDKCG 1304
Query: 4325 KNPGDQANCHPELHASDKSELTTFGLNSSPNEGKICSWLDVVDMSSSLRAILNEYQMGAS 4504
GD A L D ++ L S ++ DV+ +S++L+ IL++Y +G
Sbjct: 1305 AKFGDFA--FKGLGNLDFETISRGVLRKS------WTYNDVLRLSNALKKILHKYSIGQR 1356
Query: 4505 LTEGHKSLLMEALNYHPKREAKLGIGVQDIKIGHSLSHPDSRCFILFREDGTKDDVSYHK 4684
L+E K+ ++ AL +HP+R KLGI DI++ + H +SRCF L REDG+ +D SYHK
Sbjct: 1357 LSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSYHK 1416
Query: 4685 CVIGAAKQISPEIGLWAENKLYRRFWSK 4768
CVIGA + I+PE + ++YR W +
Sbjct: 1417 CVIGALEIIAPE-----KAEIYRAKWKR 1439
Score = 99.0 bits (245), Expect = 2e-17
Identities = 38/99 (38%), Positives = 70/99 (70%)
Frame = +2
Query: 59 VPEGRLIHIEFDLLSGKEIERTCPVDVTVTSDLRSPKLGLPNVSSECATCGSRNTRECDG 238
VP G L I + + E E+ +++ S++ +P+LGLPN ++EC++CG+++ + C+G
Sbjct: 12 VPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEG 71
Query: 239 HFGVVKFPAIIYHPHLISEVVQILNTICPGCRSIKLEKR 355
HFG +KFP I HP+ +S++ ++LN+ICP C++I+ E++
Sbjct: 72 HFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQ 110
>ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Citrus sinensis]
Length = 1481
Score = 921 bits (2380), Expect = 0.0
Identities = 555/1408 (39%), Positives = 795/1408 (56%), Gaps = 28/1408 (1%)
Frame = +2
Query: 629 CKYCTRNSTGWYPPLKFMILSEDIQGKKTFSVVAQINGKLPKKFRNKCQTDVLPEDYWNF 808
CKYC RN WYP ++F + S+D+ GK +++ +I+ K KK + LP+DYW F
Sbjct: 162 CKYCVRNPAQWYPRMRFKLSSKDLSGKT--AIIVEIDEKPSKKNKK------LPDDYWGF 213
Query: 809 LPNLQHQGSNK---NRVSLSPMQVRYLLKELDPEYIKRFVSRPELLFLSCLPVIPNSLRV 979
+P Q N NR LS QV YLLK++DP + F+ + FL C PV PN+ RV
Sbjct: 214 IPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHRV 273
Query: 980 METSHVFSDGPRLYFDERSMALRKVVELNKKMDELRDYQHDGALLCSHITGPVLDCLHKS 1159
E H FS +L+FD + L+K+V+ + EL SH+ V DCL S
Sbjct: 274 TEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIEL-----------SHL---VQDCLKIS 319
Query: 1160 KLH-----NRPAAEV------SATCKYGRKWLQDVVLGKRSDHSFRMVVVGDPKLRLGEI 1306
KLH + +AEV + G +W++DVVLGKR+D FRMVV GDP ++L EI
Sbjct: 320 KLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEI 379
Query: 1307 GIPSDICDKLFVAEHVNSYNLKKLNITCNSHLLTR-ELYARSKGKLKPLHKTGKLKVGDF 1483
GIP + ++L ++E +NS+N ++L++ + LL + ELY KG L + + L++GD
Sbjct: 380 GIPCHVAERLQISERLNSWNWERLSVCTSFRLLEKGELYVCRKGGLVRIRRIDALELGDI 439
Query: 1484 FYRPLEDGDIVLINRPPSIHQHSLIAMNVKILQSQPALAMNPLSCAPFAGDFDGDCLHGY 1663
YRPL DGDIVLINRPPSIH HSLIA+ VK+L + +NPL C+PF GDFDGDCLHGY
Sbjct: 440 IYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGY 499
Query: 1664 VAQSELSRIELRELVSMESQLLNVQDGRXXXXXXXXXXXXAYLLTGRDVFLNKFEMQQLE 1843
+ Q+ +R+EL ELV+++ QL+N Q GR A+LL V L+ +MQQL+
Sbjct: 500 IPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQ 559
Query: 1844 MLCSYLAPCPAIVQSQEVPPLWTGHQLLRALLSPCMYFGTESGTPENCGEEILSSDLSFW 2023
M C + P I + + +W+G QL LL P + S G +++S++ S W
Sbjct: 560 MFCPHRFLSPDIFKISK-DSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSW 618
Query: 2024 VKKTLPNFVSSMFKCYGKKALDLLFSAQEVLCEWISMRGFTVSLNDIYLSPDSYSRAKMI 2203
++ N + K Y K LD L++AQEVLCEW+S+RG TVSL+D+YL+ S SR ++
Sbjct: 619 LRDYEGNLFQYLIKRYQDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 678
Query: 2204 DEINYALEDAEDACVMKELIMDAEFESLRKCHN-ENEDALVCLDYDSSIHKPARLSQASV 2380
DEI Y L +A+D C ++L++D+ L + E+ +L + A LSQASV
Sbjct: 679 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAEDSESTRSLQGEHLSYEKQRSAALSQASV 738
Query: 2381 DAFRDVFYELQYAIRPYIGRENSILSMINAGSQGNMQKLVQQSACLGLQLAPGSLSFPMP 2560
DAF+ VF+++Q Y ++NS+L+M AGS+GN+ KLVQ S CLGLQ + LSF P
Sbjct: 739 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFP 798
Query: 2561 DKLVHNLSNPRIEFHSCGMHQNSAGSATGQNYAVIRSSFVDGLNPIECFDHAISIRPSLF 2740
H LS G + A S AV+ +SF+ GLNP+ECF H+++ R S F
Sbjct: 799 ----HELSCAAWNRLRAGDNTECAKSYIPS--AVVANSFLTGLNPLECFIHSVTSRDSSF 852
Query: 2741 KENVAKSGSLARKLMFYMRDLYMAYDGTVRSAYGQQLVQFSYGASKEKFIESEESHELFS 2920
+N G+L R+LMF+MRDL AYDGTVR+AYG Q+VQFSY
Sbjct: 853 SDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNI---------------- 896
Query: 2921 DGNIESNG-VGGQPVXXXXXXXXXXXXXXXXDLPTNSLEPSPLMNLKKILECXXXXXXXX 3097
+G G +GGQ V D P + LE SPL+NLK +LEC
Sbjct: 897 EGTSTPTGEIGGQSVGSLSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKKSNAD 956
Query: 3098 XXXXXXXXXXXERWLYGFEYGALEVKNHLDRVLFSDLLTNFMIFYDAYGEEGTNCSPWIS 3277
+ +GFEYGALEVKNHL+ ++ SD+++ MI Y + SPWI
Sbjct: 957 QTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWIC 1016
Query: 3278 HFHVDKERLVRKRLTIQAVIEKLETNYGSRRKKSGKVQLPKVHIRSQCCSFLDEEGKNDK 3457
HFHV KE + R L ++I+ L + R + K+ +P + I ++ CS ++ + + +
Sbjct: 1017 HFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTEL-KISVPDMLISNKDCSSINMQKECND 1075
Query: 3458 TCCITVAVSDN----CITLETIKDSVIPDILQTLIKGFLEFKKVDIIWG-------SQID 3604
C+TV + +N I LETI+ V+P +L+T++KGF E KKVDI+W S D
Sbjct: 1076 AFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDD 1135
Query: 3605 SNGELFVKVTRSQSCHVETFWSNLTDACIPIMHLIDWERSHPDDICGVYNVCGIEGAWKY 3784
S GEL+++V+ S CH+ + WS L + C IM +IDW RSHPD+I GI+ ++
Sbjct: 1136 SFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQF 1195
Query: 3785 LFRALKSTTSDIGRSIHQEHLLLVADCLTVSGKFHGLSARGLTVQRKSASISSPFNQACF 3964
L+S SD G++I EHLL+VA+ L+ +G+F GL+A+GL +QRK +S+SSPF QA F
Sbjct: 1196 FLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFF 1255
Query: 3965 SNPRDRFINAAKQGSIDNLYGTVDALAWGKEATLGTGGPFEIIYSGKVHNPKKSESIYET 4144
SNP FI AAK G++DNL G+VDAL WGK ++GTGG F+IIYSG+ K +Y
Sbjct: 1256 SNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYNL 1315
Query: 4145 LNCMRSDKFHHDNRPAYRNITAKWKGKSKFAKAHSNTGYLGSNLMLNKVNLEGLWNEEFV 4324
L+ +++K K K KA +GL +++
Sbjct: 1316 LS---------------TPVSSKQNEKLKVCKA------------------QGLISDKCG 1342
Query: 4325 KNPGDQANCHPELHASDKSELTTFGLNSSPNEGKICSWLDVVDMSSSLRAILNEYQMGAS 4504
GD A L D ++ L S ++ DV+ +S++L+ IL++Y +G
Sbjct: 1343 AKFGDFA--FKGLGNLDFETISRGVLRKS------WTYNDVLRLSNALKKILHKYSIGQR 1394
Query: 4505 LTEGHKSLLMEALNYHPKREAKLGIGVQDIKIGHSLSHPDSRCFILFREDGTKDDVSYHK 4684
L+E K+ ++ AL +HP+R KLGI DI++ + H +SRCF L REDG+ +D SYHK
Sbjct: 1395 LSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSYHK 1454
Query: 4685 CVIGAAKQISPEIGLWAENKLYRRFWSK 4768
CVIGA + I+PE + ++YR W +
Sbjct: 1455 CVIGALEIIAPE-----KAEIYRAKWKR 1477
Score = 99.0 bits (245), Expect = 2e-17
Identities = 38/99 (38%), Positives = 70/99 (70%)
Frame = +2
Query: 59 VPEGRLIHIEFDLLSGKEIERTCPVDVTVTSDLRSPKLGLPNVSSECATCGSRNTRECDG 238
VP G L I + + E E+ +++ S++ +P+LGLPN ++EC++CG+++ + C+G
Sbjct: 50 VPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEG 109
Query: 239 HFGVVKFPAIIYHPHLISEVVQILNTICPGCRSIKLEKR 355
HFG +KFP I HP+ +S++ ++LN+ICP C++I+ E++
Sbjct: 110 HFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQ 148
>gb|ESW30447.1| hypothetical protein PHAVU_002G153700g [Phaseolus vulgaris]
Length = 1463
Score = 920 bits (2379), Expect = 0.0
Identities = 552/1415 (39%), Positives = 796/1415 (56%), Gaps = 31/1415 (2%)
Frame = +2
Query: 614 QNQLGCKYCTRNSTGWYPPLKFMILSEDIQGKKTFSVVAQINGKLPKKFRNKCQTDVLPE 793
+ + CKYC+ N G YP +KF S D+ + +++ ++N K KK + LP
Sbjct: 118 KRSINCKYCSGNGVGRYPAMKFKFSSNDLYRRT--AIIVEVNDKASKKSLGRS----LPA 171
Query: 794 DYWNFLP-NLQHQGSNKNRVSLSPMQVRYLLKELDPEYIKRFVSRPELLFLSCLPVIPNS 970
DYW+FLP + Q + + NR LSP QV LL ++DP +I+++V R L+ L+C PV PN
Sbjct: 172 DYWDFLPYDAQQEENYVNRRVLSPGQVTSLLNDVDPNFIEKYVPRNNLITLNCFPVTPNC 231
Query: 971 LRVMETSHVFSDGPRLYFDERSMALRKVVELNKKMDELRDYQHDGALLCSHITGPVLDCL 1150
RV E + S+G RL FD+R+ + +K+V+ +EL + S
Sbjct: 232 HRVTEVPYAISNGNRLSFDDRTRSCKKLVDFRGTANELSSRLNPDKTPISIF-------- 283
Query: 1151 HKSKLHNRPAAEVSATCKYGRKWLQDVVLGKRSDHSFRMVVVGDPKLRLGEIGIPSDICD 1330
+ + + AE +A G +W++DV+LGKR+D +FR VVVGDP L L EIGIP I +
Sbjct: 284 --ADIQKKKVAE-NACNSSGLRWIKDVILGKRNDSTFRTVVVGDPSLELSEIGIPCHIAE 340
Query: 1331 KLFVAEHVNSYNLKKLNITCNSHLLTR-ELYARSKGKLKPLHKTGKLKVGDFFYRPLEDG 1507
L V+E+VN NL+KL C LL + ++ KG L K L++GD FYRPL DG
Sbjct: 341 SLQVSEYVNRQNLEKLLYCCELRLLEKGQINVCRKGSSIHLFKKEDLQIGDQFYRPLCDG 400
Query: 1508 DIVLINRPPSIHQHSLIAMNVKILQSQPALAMNPLSCAPFAGDFDGDCLHGYVAQSELSR 1687
D VLINRPPSIHQHS+IA+ V++L + +NPL C+P GDFDGDCLHGY+ QS +R
Sbjct: 401 DKVLINRPPSIHQHSMIALTVRVLPISSVVCINPLCCSPLRGDFDGDCLHGYIPQSVSAR 460
Query: 1688 IELRELVSMESQLLNVQDGRXXXXXXXXXXXXAYLLTGRDVFLNKFEMQQLEMLCSYLAP 1867
+EL ELV+++ QL N Q GR AYLL V L+ ++MQQL+MLC+
Sbjct: 461 VELSELVALDKQLFNGQSGRNLLSLSEDSLTAAYLLMEDGVLLDVYQMQQLQMLCNKGLA 520
Query: 1868 CPAIVQSQEV-PPLWTGHQLLRALL-SPCMYFGTESGTPENCGEEILSSDLSFWVKKTLP 2041
PAIV+S W+G QL LL S Y G + GE + S + S W++ +
Sbjct: 521 PPAIVKSPSSNSSFWSGKQLFSMLLPSDFDYSFPSDGVVVSDGELVSSFEASGWLRDSDC 580
Query: 2042 NFVSSMFKCYGKKALDLLFSAQEVLCEWISMRGFTVSLNDIYLSPDSYSRAKMIDEINYA 2221
N + + + K+L+ LF+AQ VLCEW+SM GF+VSL+D+YLS DSY+R MI+EI Y
Sbjct: 581 NVFQGLVEHFQGKSLNFLFAAQNVLCEWLSMTGFSVSLSDLYLSSDSYARKNMIEEICYG 640
Query: 2222 LEDAEDACVMKELIMDAEFESLRKCHNENEDALVC----LDYDSSIHKPARLSQASVDAF 2389
L+DAE AC K+L++D + L H E+E+++ L+Y+ I A LSQASVDAF
Sbjct: 641 LQDAEKACNFKQLLLDCYCDFLSGNHEESENSMTVDADSLNYERQIS--AALSQASVDAF 698
Query: 2390 RDVFYELQYAIRPYIGRENSILSMINAGSQGNMQKLVQQSACLGLQLAPGSLSFPMPDKL 2569
R VF +Q Y +N+ L+M AGS+ ++ +L Q S CLG+Q + LS+ +P L
Sbjct: 699 RHVFRNIQSLADKYACTDNTFLAMNKAGSKSSLVRLAQHSMCLGMQNSLVRLSYRLPRHL 758
Query: 2570 VHNLSNPRIEFHSCGMHQNSAGSATGQNY---AVIRSSFVDGLNPIECFDHAISIRPSLF 2740
N + S ++ + S Q+Y AV++SSF+ GLNP+ECF H+++IR S F
Sbjct: 759 SCAAWNSQKGLDSIQIYSGTLESV--QSYIPCAVVKSSFLTGLNPLECFVHSVTIRASGF 816
Query: 2741 KENVAKSGSLARKLMFYMRDLYMAYDGTVRSAYGQQLVQFSYGASKEKFIESEESHELFS 2920
EN G+L R+LMF+MRDL+ AYDGTVR+ YG QL+QFSY I+ S
Sbjct: 817 SENADVPGTLTRRLMFFMRDLFAAYDGTVRNLYGNQLIQFSYD------IDENTS----C 866
Query: 2921 DGNIESNGVGGQPVXXXXXXXXXXXXXXXXDLPTNSLEPSPLMNLKKILECXXXXXXXXX 3100
D + + +GG+PV D P + LE SPL+NLK +LEC
Sbjct: 867 DKSFKEYAIGGEPVGALSASAVSEAGYSALDQPVSLLEASPLLNLKNVLECGSRKKNGDQ 926
Query: 3101 XXXXXXXXXXERWLYGFEYGALEVKNHLDRVLFSDLLTNFMIFYDAYGEEGTN-CSPWIS 3277
+ +GFEY ALEVKN+L+R+LFS +++ MI + SPW+
Sbjct: 927 SVSLFFSEKVGKQRHGFEYAALEVKNYLERLLFSKIVSTVMIIFTPPDSSSLEKYSPWVC 986
Query: 3278 HFHVDKERLVRKRLTIQAVIEKLETNYGSRRKKSGKVQLPKVHIRSQCCSFLDEEGKNDK 3457
HFH+DKE L+R++L + ++I+ L Y S+ + KV K+ I S+ CS +D K +
Sbjct: 987 HFHLDKEILMRRKLKVHSIIDYLYQRYYSQSTEP-KVGFTKLKISSKKCS-VDSTAKEGE 1044
Query: 3458 TCCITVAVSDNCIT------------LETIKDSVIPDILQTLIKGFLEFKKVDIIWGSQI 3601
CI SD+CIT L +++D +IP L T IKGF++ KKVDI+W +Q
Sbjct: 1045 DICIDKEDSDDCITVTIVENSENPIQLNSVRDLMIPFFLGTTIKGFMDIKKVDILWNNQS 1104
Query: 3602 D-------SNGELFVKVTRSQSCHVETFWSNLTDACIPIMHLIDWERSHPDDICGVYNVC 3760
S+GEL+++VT + S + FW L + C IM +IDW RSHPD+I + +
Sbjct: 1105 KGTNSYNGSSGELYLRVTVASSGNTGRFWGVLVNHCHKIMQIIDWPRSHPDNINYLSSAY 1164
Query: 3761 GIEGAWKYLFRALKSTTSDIGRSIHQEHLLLVADCLTVSGKFHGLSARGLTVQRKSASIS 3940
GI+ AW+Y +++L S SD G+SI +HL L+A+ ++ SG+F GL+A+G+ QR+ AS+S
Sbjct: 1165 GIDVAWQYYYKSLASAISDTGKSILPKHLRLLANSMSASGEFVGLNAKGMAQQRQHASVS 1224
Query: 3941 SPFNQACFSNPRDRFINAAKQGSIDNLYGTVDALAWGKEATLGTGGPFEIIYSGKVHNPK 4120
SPF QACFSNP FI AAK DNL G++DALAWG ++GT G F+IIYS K H
Sbjct: 1225 SPFVQACFSNPGRSFIKAAKSELTDNLQGSLDALAWGNCPSMGTSGLFDIIYSEKGHEVD 1284
Query: 4121 KSESIYETLNCMRSDKFHHDNRPAYRNITAKWKGKSKFAKAHSNTGYLGSNLMLNKVNLE 4300
K+ +Y+ L ++ F K ++ G+ N K E
Sbjct: 1285 KAVDVYKLL-------------------------EASFDKPNNKIGFHAHNNSSGKCGSE 1319
Query: 4301 GLWNEEFVKNPGDQANCHPELHASDKSELTTFGLNSSPNEGKICSWLDVVDMSSSLRAIL 4480
+ G Q K+ L F + D+ ++++ R IL
Sbjct: 1320 FRHKNGYAFKEGKQW----------KNILRNF-----------VTVNDIQKLTTASRCIL 1358
Query: 4481 NEYQMGASLTEGHKSLLMEALNYHPKREAKLGIGVQDIKIGHSLSHPDSRCFILFREDGT 4660
N+Y++ L+E +S ++ LN+HP+R KLGIG QDIK+G DSRCF + R DGT
Sbjct: 1359 NKYEIDELLSEFDRSTILRVLNFHPRRSEKLGIGPQDIKVGWHPKFKDSRCFHIVRTDGT 1418
Query: 4661 KDDVSYHKCVIGAAKQISPEIGLWAENKLYRRFWS 4765
+D SY KC++ A + + P++ +K+ ++ WS
Sbjct: 1419 VEDFSYRKCILRALEVVDPKM-----SKIQKKKWS 1448
Score = 107 bits (268), Expect = 4e-20
Identities = 46/103 (44%), Positives = 68/103 (66%)
Frame = +2
Query: 62 PEGRLIHIEFDLLSGKEIERTCPVDVTVTSDLRSPKLGLPNVSSECATCGSRNTRECDGH 241
P G + I+FD+L+ +IE+ +++ + LGLPN S ECATCGS+N + C+GH
Sbjct: 12 PSGVIRAIKFDVLTENDIEKVSVLEINAAGQVTGSTLGLPNTSDECATCGSKNKKICEGH 71
Query: 242 FGVVKFPAIIYHPHLISEVVQILNTICPGCRSIKLEKRNKDFL 370
FGV+KFP I HP+ +SE+ QILN ICP C+SI+ + + +
Sbjct: 72 FGVIKFPFPILHPYFMSEIAQILNKICPVCKSIRHKSKGAQLI 114
>gb|ESW30448.1| hypothetical protein PHAVU_002G153700g [Phaseolus vulgaris]
Length = 1464
Score = 917 bits (2371), Expect = 0.0
Identities = 550/1415 (38%), Positives = 793/1415 (56%), Gaps = 31/1415 (2%)
Frame = +2
Query: 614 QNQLGCKYCTRNSTGWYPPLKFMILSEDIQGKKTFSVVAQINGKLPKKFRNKCQTDVLPE 793
+ + CKYC+ N G YP +KF S D+ + +++ ++N K KK + LP
Sbjct: 118 KRSINCKYCSGNGVGRYPAMKFKFSSNDLYRRT--AIIVEVNDKASKKSLGRS----LPA 171
Query: 794 DYWNFLP-NLQHQGSNKNRVSLSPMQVRYLLKELDPEYIKRFVSRPELLFLSCLPVIPNS 970
DYW+FLP + Q + + NR LSP QV LL ++DP +I+++V R L+ L+C PV PN
Sbjct: 172 DYWDFLPYDAQQEENYVNRRVLSPGQVTSLLNDVDPNFIEKYVPRNNLITLNCFPVTPNC 231
Query: 971 LRVMETSHVFSDGPRLYFDERSMALRKVVELNKKMDELRDYQHDGALLCSHITGPVLDCL 1150
RV E + S+G RL FD+R+ + +K+V+ +EL + S
Sbjct: 232 HRVTEVPYAISNGNRLSFDDRTRSCKKLVDFRGTANELSSRLNPDKTPISIF-------- 283
Query: 1151 HKSKLHNRPAAEVSATCKYGRKWLQDVVLGKRSDHSFRMVVVGDPKLRLGEIGIPSDICD 1330
+ + + AE +A G +W++DV+LGKR+D +FR VVVGDP L L EIGIP I +
Sbjct: 284 --ADIQKKKVAE-NACNSSGLRWIKDVILGKRNDSTFRTVVVGDPSLELSEIGIPCHIAE 340
Query: 1331 KLFVAEHVNSYNLKKLNITCNSHLLTR-ELYARSKGKLKPLHKTGKLKVGDFFYRPLEDG 1507
L V+E+VN NL+KL C LL + ++ KG L K L++GD FYRPL DG
Sbjct: 341 SLQVSEYVNRQNLEKLLYCCELRLLEKGQINVCRKGSSIHLFKKEDLQIGDQFYRPLCDG 400
Query: 1508 DIVLINRPPSIHQHSLIAMNVKILQSQPALAMNPLSCAPFAGDFDGDCLHGYVAQSELSR 1687
D VLINRPPSIHQHS+IA+ V++L + +NPL C+P GDFDGDCLHGY+ QS +R
Sbjct: 401 DKVLINRPPSIHQHSMIALTVRVLPISSVVCINPLCCSPLRGDFDGDCLHGYIPQSVSAR 460
Query: 1688 IELRELVSMESQLLNVQDGRXXXXXXXXXXXXAYLLTGRDVFLNKFEMQQLEMLCSYLAP 1867
+EL ELV+++ QL N Q GR AYLL V L+ ++MQQL+MLC+
Sbjct: 461 VELSELVALDKQLFNGQSGRNLLSLSEDSLTAAYLLMEDGVLLDVYQMQQLQMLCNKGLA 520
Query: 1868 CPAIVQSQEV-PPLWTGHQLLRALL-SPCMYFGTESGTPENCGEEILSSDLSFWVKKTLP 2041
PAIV+S W+G QL LL S Y G + GE + S + S W++ +
Sbjct: 521 PPAIVKSPSSNSSFWSGKQLFSMLLPSDFDYSFPSDGVVVSDGELVSSFEASGWLRDSDC 580
Query: 2042 NFVSSMFKCYGKKALDLLFSAQEVLCEWISMRGFTVSLNDIYLSPDSYSRAKMIDEINYA 2221
N + + + K+L+ LF+AQ VLCEW+SM GF+VSL+D+YLS DSY+R MI+EI Y
Sbjct: 581 NVFQGLVEHFQGKSLNFLFAAQNVLCEWLSMTGFSVSLSDLYLSSDSYARKNMIEEICYG 640
Query: 2222 LEDAEDACVMKELIMDAEFESLRKCHNENEDALVC----LDYDSSIHKPARLSQASVDAF 2389
L+DAE AC K+L++D + L H E+E+++ L+Y+ I A LSQASVDAF
Sbjct: 641 LQDAEKACNFKQLLLDCYCDFLSGNHEESENSMTVDADSLNYERQIS--AALSQASVDAF 698
Query: 2390 RDVFYELQYAIRPYIGRENSILSMINAGSQGNMQKLVQQSACLGLQLAPGSLSFPMPDKL 2569
R VF +Q Y +N+ L+M AGS+ ++ +L Q S CLG+Q + LS+ +P L
Sbjct: 699 RHVFRNIQSLADKYACTDNTFLAMNKAGSKSSLVRLAQHSMCLGMQNSLVRLSYRLPRHL 758
Query: 2570 VHNLSNPRIEFHSCGMHQNSAGSATGQNY---AVIRSSFVDGLNPIECFDHAISIRPSLF 2740
N + S ++ + S Q+Y AV++SSF+ GLNP+ECF H+++IR S F
Sbjct: 759 SCAAWNSQKGLDSIQIYSGTLESV--QSYIPCAVVKSSFLTGLNPLECFVHSVTIRASGF 816
Query: 2741 KENVAKSGSLARKLMFYMRDLYMAYDGTVRSAYGQQLVQFSYGASKEKFIESEESHELFS 2920
EN G+L R+LMF+MRDL+ AYDGTVR+ YG QL+QFSY I+ S
Sbjct: 817 SENADVPGTLTRRLMFFMRDLFAAYDGTVRNLYGNQLIQFSYD------IDENTS----C 866
Query: 2921 DGNIESNGVGGQPVXXXXXXXXXXXXXXXXDLPTNSLEPSPLMNLKKILECXXXXXXXXX 3100
D + + +GG+PV D P + LE SPL+NLK +LEC
Sbjct: 867 DKSFKEYAIGGEPVGALSASAVSEAGYSALDQPVSLLEASPLLNLKNVLECGSRKKNGDQ 926
Query: 3101 XXXXXXXXXXERWLYGFEYGALEVKNHLDRVLFSDLLTNFMIFYDAYGEEGTN-CSPWIS 3277
+ +GFEY ALEVKN+L+R+LFS +++ MI + SPW+
Sbjct: 927 SVSLFFSEKVGKQRHGFEYAALEVKNYLERLLFSKIVSTVMIIFTPPDSSSLEKYSPWVC 986
Query: 3278 HFHVDKERLVRKRLTIQAVIEKLETNYGSRRKKSGKVQLPKVHIRSQCCSFLDEEGKNDK 3457
HFH+DKE L+R++L + ++I+ L Y S+ + KV K+ I S +D K +
Sbjct: 987 HFHLDKEILMRRKLKVHSIIDYLYQRYYSQSTEP-KVGFTKLKISSNRKCSVDSTAKEGE 1045
Query: 3458 TCCITVAVSDNCIT------------LETIKDSVIPDILQTLIKGFLEFKKVDIIWGSQI 3601
CI SD+CIT L +++D +IP L T IKGF++ KKVDI+W +Q
Sbjct: 1046 DICIDKEDSDDCITVTIVENSENPIQLNSVRDLMIPFFLGTTIKGFMDIKKVDILWNNQS 1105
Query: 3602 D-------SNGELFVKVTRSQSCHVETFWSNLTDACIPIMHLIDWERSHPDDICGVYNVC 3760
S+GEL+++VT + S + FW L + C IM +IDW RSHPD+I + +
Sbjct: 1106 KGTNSYNGSSGELYLRVTVASSGNTGRFWGVLVNHCHKIMQIIDWPRSHPDNINYLSSAY 1165
Query: 3761 GIEGAWKYLFRALKSTTSDIGRSIHQEHLLLVADCLTVSGKFHGLSARGLTVQRKSASIS 3940
GI+ AW+Y +++L S SD G+SI +HL L+A+ ++ SG+F GL+A+G+ QR+ AS+S
Sbjct: 1166 GIDVAWQYYYKSLASAISDTGKSILPKHLRLLANSMSASGEFVGLNAKGMAQQRQHASVS 1225
Query: 3941 SPFNQACFSNPRDRFINAAKQGSIDNLYGTVDALAWGKEATLGTGGPFEIIYSGKVHNPK 4120
SPF QACFSNP FI AAK DNL G++DALAWG ++GT G F+IIYS K H
Sbjct: 1226 SPFVQACFSNPGRSFIKAAKSELTDNLQGSLDALAWGNCPSMGTSGLFDIIYSEKGHEVD 1285
Query: 4121 KSESIYETLNCMRSDKFHHDNRPAYRNITAKWKGKSKFAKAHSNTGYLGSNLMLNKVNLE 4300
K+ +Y+ L ++ F K ++ G+ N K E
Sbjct: 1286 KAVDVYKLL-------------------------EASFDKPNNKIGFHAHNNSSGKCGSE 1320
Query: 4301 GLWNEEFVKNPGDQANCHPELHASDKSELTTFGLNSSPNEGKICSWLDVVDMSSSLRAIL 4480
+ G Q K+ L F + D+ ++++ R IL
Sbjct: 1321 FRHKNGYAFKEGKQW----------KNILRNF-----------VTVNDIQKLTTASRCIL 1359
Query: 4481 NEYQMGASLTEGHKSLLMEALNYHPKREAKLGIGVQDIKIGHSLSHPDSRCFILFREDGT 4660
N+Y++ L+E +S ++ LN+HP+R KLGIG QDIK+G DSRCF + R DGT
Sbjct: 1360 NKYEIDELLSEFDRSTILRVLNFHPRRSEKLGIGPQDIKVGWHPKFKDSRCFHIVRTDGT 1419
Query: 4661 KDDVSYHKCVIGAAKQISPEIGLWAENKLYRRFWS 4765
+D SY KC++ A + + P++ +K+ ++ WS
Sbjct: 1420 VEDFSYRKCILRALEVVDPKM-----SKIQKKKWS 1449
Score = 107 bits (268), Expect = 4e-20
Identities = 46/103 (44%), Positives = 68/103 (66%)
Frame = +2
Query: 62 PEGRLIHIEFDLLSGKEIERTCPVDVTVTSDLRSPKLGLPNVSSECATCGSRNTRECDGH 241
P G + I+FD+L+ +IE+ +++ + LGLPN S ECATCGS+N + C+GH
Sbjct: 12 PSGVIRAIKFDVLTENDIEKVSVLEINAAGQVTGSTLGLPNTSDECATCGSKNKKICEGH 71
Query: 242 FGVVKFPAIIYHPHLISEVVQILNTICPGCRSIKLEKRNKDFL 370
FGV+KFP I HP+ +SE+ QILN ICP C+SI+ + + +
Sbjct: 72 FGVIKFPFPILHPYFMSEIAQILNKICPVCKSIRHKSKGAQLI 114
>ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase
subunit beta [Medicago truncatula]
Length = 1687
Score = 915 bits (2365), Expect = 0.0
Identities = 573/1466 (39%), Positives = 792/1466 (54%), Gaps = 62/1466 (4%)
Frame = +2
Query: 554 KCSRSEVKQSTISEIRAGATQNQLGCKYCTRNSTGWYPPLKFMILSEDIQGKKTFSVVAQ 733
K R E++ + G GCKYC N G YP +KF + S D + +++ +
Sbjct: 253 KSIRQEIRVKRAKSL-LGYNNQPKGCKYCCGNGMGRYPAMKFRVSSNDFFRRT--AIIVE 309
Query: 734 INGKLPKKFRNKCQTDVLPEDYWNF-LPNLQHQGSNKNRVSLSPMQVRYLLKELDPEYIK 910
+N K RN + LP DYW+F L ++Q + ++ NR LSP+QV LL +DP +I+
Sbjct: 310 VNDISLNKKRNLGRG--LPADYWDFILGDVQQEENHVNRKVLSPVQVENLLSGVDPNFIE 367
Query: 911 RFVSRPELLFLSCLPVIPNSLRVMETSHVFSDGPRLYFDERSMALRKVVELNKKMDELRD 1090
+F+ +L+ LSC V PN RV E H S G L FD R+ A +K+V+ +EL
Sbjct: 368 KFIPSMDLVGLSCFLVAPNCHRVTEVPHRLSGGYPLSFDNRTRACKKLVDFRGTANEL-- 425
Query: 1091 YQHDGALLCSHITGPVLDCLHKSK------------------LHNRPAAEVSATCKYGRK 1216
+ VLDCL SK L R E +A G +
Sbjct: 426 ------------SSRVLDCLRFSKASFSVINPDRTPVNIFTELQQRKVGE-NACNSSGLR 472
Query: 1217 WLQDVVLGKRSDHSFRMVVVGDPKLRLGEIGIPSDICDKLFVAEHVNSYNLKKLNITCNS 1396
W++DVVLGKR+D +FR VVVGDP L L EIGIP I + L V+E+VN N + L C
Sbjct: 473 WMKDVVLGKRNDCTFRTVVVGDPDLELSEIGIPCQIAEALQVSEYVNRQNRQNLLYCCEL 532
Query: 1397 HLLTR-ELYARSKGKLKPLHKTGKLKVGDFFYRPLEDGDIVLINRPPSIHQHSLIAMNVK 1573
LL + ++ R G L+K L++GD FYRPL DGD VLINRPPSIHQHS+IA+ V+
Sbjct: 533 RLLEKGQINVRRNGNPVVLYKKEDLQIGDIFYRPLVDGDKVLINRPPSIHQHSMIALTVR 592
Query: 1574 ILQSQPALAMNPLSCAPFAGDFDGDCLHGYVAQSELSRIELRELVSMESQLLNVQDGRXX 1753
+L +++NP+ C+P GDFDGDCLHGY+ QS +R+EL ELV+++ QL+N Q G
Sbjct: 593 VLPISSVVSINPICCSPLRGDFDGDCLHGYIPQSVGARVELNELVALDRQLINGQSGGNL 652
Query: 1754 XXXXXXXXXXAYLLTGRDVFLNKFEMQQLEMLCSYLAPCPAIVQSQEV-PPLWTGHQLLR 1930
A+LL V N +++QQLEMLC+ PAI ++ P W+G QL
Sbjct: 653 LSLSQDSLTAAHLLLEDGVGFNIYQVQQLEMLCNKELTSPAIFKAPSSNTPFWSGKQLFS 712
Query: 1931 ALL-SPCMYFGTESGTPENCGEEILSSDLSFWVKKTLPNFVSSMFKCYGKKALDLLFSAQ 2107
LL S Y + GE I S+ S W++ + N S+ + + K LD+L AQ
Sbjct: 713 MLLPSKFDYAFPSNDVFVKDGELISCSESSGWLRDSENNVFQSLVEHFQGKILDVLHGAQ 772
Query: 2108 EVLCEWISMRGFTVSLNDIYLSPDSYSRAKMIDEINYALEDAEDACVMKELIMDAEFESL 2287
+ LCEW+SM GF+VSL+D+YLS DSY+R M++EI+Y L AE AC +L++D + L
Sbjct: 773 KALCEWLSMTGFSVSLSDLYLSSDSYARKNMMEEISYGLRVAEQACDFNQLLVDHYSDFL 832
Query: 2288 RKCHNENEDALVCLDYDSSIHK---PARLSQASVDAFRDVFYELQYAIRPYIGRENSILS 2458
ENE V +D D H+ A SQASVDAFR VF +Q + ++NS L+
Sbjct: 833 SASPEENEK-FVTVDVDRLNHERQISAAQSQASVDAFRHVFRNIQSLADKHACKDNSFLA 891
Query: 2459 MINAGSQGNMQKLVQQSACLGLQLAPGSLSFPMPDKLVHNLSNPRIEFHSCGMHQNSAGS 2638
M AGS+GN+ KLVQ S CLGLQ + LS+ +P +L N + HS M +S
Sbjct: 892 MFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRIPRELSCAGWNSQKGLHS--MEMSSDTL 949
Query: 2639 ATGQNY---AVIRSSFVDGLNPIECFDHAISIRPSLFKENVAKSGSLARKLMFYMRDLYM 2809
Q+Y AV+ SSF+ GLNP+ECF H+++ R S F +N G+L R+LMF+MRD+Y
Sbjct: 950 EPKQSYIAHAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDMYD 1009
Query: 2810 AYDGTVRSAYGQQLVQFSYGASKEKFIESEESHELFSDGNIESNGVGGQPVXXXXXXXXX 2989
AYDGTVR+ YG QL+QFSY A ++ +S ++ +GG+PV
Sbjct: 1010 AYDGTVRNLYGNQLIQFSYDAEEDSSCDSYFREDI----------IGGEPVGALSACAVS 1059
Query: 2990 XXXXXXXDLPTNSLEPSPLMNLKKILECXXXXXXXXXXXXXXXXXXXERWLYGFEYGALE 3169
P + LE SPL+NLK +LEC + GFEY ALE
Sbjct: 1060 EAAYSALSQPISLLEASPLLNLKNVLECGSRKKGGDQTVSLFLSEKIGKQRNGFEYAALE 1119
Query: 3170 VKNHLDRVLFSDLLTNFMIFYDAYGEEGTNCSPWISHFHVDKERLVRKRLTIQAVIEKLE 3349
VKN+L+R +FS++++ MI + SPW+ HFH+DKE + R++L + ++I+ L
Sbjct: 1120 VKNYLERYMFSNIVSTVMIIFTPQHCSQVKYSPWVCHFHLDKENVTRRKLEVHSIIDSLY 1179
Query: 3350 TNYGSRRKKSGKVQLPKVHIRSQCCSFLDEEGKNDKTC---------------------- 3463
Y S R++S KV LP + I S+ S + E K +TC
Sbjct: 1180 QQYDSFRRES-KVILPSLKISSK--SGREVENKEGQTCSKCQDYKANEGGETSVGNEKDG 1236
Query: 3464 --CITVAV---SDNCITLETIKDSVIPDILQTLIKGFLEFKKVDIIWG-------SQIDS 3607
CITVAV S N + L++++ S+IP +LQT IKGFLE KKVDI+W S S
Sbjct: 1237 EDCITVAVVEDSKNSVQLDSVRKSLIPFLLQTAIKGFLEIKKVDILWKDLPKVTKSYNGS 1296
Query: 3608 NGELFVKVTRSQSCHVETFWSNLTDACIPIMHLIDWERSHPDDICGVYNVCGIEGAWKYL 3787
GEL+++VT S TFW L + C IM LIDW RSHPD+I + GI+ W++
Sbjct: 1297 AGELYLRVTMSSGNDNGTFWGRLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQHY 1356
Query: 3788 FRALKSTTSDIGRSIHQEHLLLVADCLTVSGKFHGLSARGLTVQRKSASISSPFNQACFS 3967
F L S TSD G+SI +HL LVA+ L+ SG+F GL+A+G+ QRK AS+SSPF QACFS
Sbjct: 1357 FHNLSSATSDTGKSILPKHLRLVANSLSASGEFVGLNAKGMARQRKHASVSSPFVQACFS 1416
Query: 3968 NPRDRFINAAKQGSIDNLYGTVDALAWGKEATLGTGGPFEIIYSGKVHNPKKSESIYETL 4147
NP F+ AAK G +DNL G +DALAWG +GTGG F+IIYS KV KS +Y L
Sbjct: 1417 NPGSSFLKAAKSGIVDNLQGNLDALAWGNCLPMGTGGQFDIIYSEKVEEINKSVDVYGLL 1476
Query: 4148 NCMRSDKFHHDNRPAYRNITAKWKGKSKFAKAHSNTGYLGSNLMLNKVNLEGLWNEEFVK 4327
+ N P R ++ GK N GY
Sbjct: 1477 ETSFNQMDQEINIPQSRKYSS---GKCSSDFRSKNGGYT--------------------- 1512
Query: 4328 NPGDQANCHPELHASDKSELTTFGLNSSPNEGKICSWLDVVDMSSSLRAILNEYQMGASL 4507
P+ KS L F + D+ ++ R ILN+YQ+ +L
Sbjct: 1513 ---------PKEPKQWKSVLRNFMTAN-----------DIQRLTFDARVILNKYQIDETL 1552
Query: 4508 TEGHKSLLMEALNYHPKREAKLGIGVQDIKIGHSLSHPDSRCFILFREDGTKDDVSYHKC 4687
+E K +M+ L++HP+R+ K G G Q+IK+G DSRCF + R+DG+ +D SY KC
Sbjct: 1553 SETDKLTIMKVLHFHPRRDEKFGSGPQNIKVGWHPEFTDSRCFFIIRKDGSVEDFSYRKC 1612
Query: 4688 VIGAAKQISPEIGLWAENKLYRRFWS 4765
++GA I P+ ++K+ R WS
Sbjct: 1613 ILGALDIIDPK-----KSKIQRNRWS 1633
Score = 86.3 bits (212), Expect = 1e-13
Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Frame = +2
Query: 104 GKEIERTCPVDVTVTSDLRSPKLGLPNVSSECATCGSRNTRECDGHFGVVKFPAIIYHPH 283
G+ E+ +++ + LGLPN S C TCGS++ + C+GHFG +KFP I HP+
Sbjct: 177 GQLHEKISALEINAPGQVTCSDLGLPNSSYGCTTCGSKDRKSCEGHFGAIKFPFTILHPY 236
Query: 284 LISEVVQILNTICPGCRSIKLE---KRNKDFLPVDFTDKSMK 400
++E+ +IL ICP C+SI+ E KR K L + K K
Sbjct: 237 FMAEIAEILQKICPACKSIRQEIRVKRAKSLLGYNNQPKGCK 278
>ref|XP_006590533.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Glycine
max]
Length = 1369
Score = 909 bits (2349), Expect = 0.0
Identities = 562/1429 (39%), Positives = 797/1429 (55%), Gaps = 44/1429 (3%)
Frame = +2
Query: 611 TQNQLGCKYCTRNSTGWYPPLKFMILSEDIQGKKTFSVVAQINGKLPKKFRNKCQTDVLP 790
T+ C YC+ YP +KF + S D+ + +++ ++ K K +P
Sbjct: 31 TKRSNDCNYCSA-----YPSMKFRVSSNDLFRRT--AIIVEV------KASKKTLGTEIP 77
Query: 791 EDYWNFLP-NLQHQGSNKNRVSLSPMQVRYLLKELDPEYIKRFVSRPELLFLSCLPVIPN 967
DYWNF+P + Q + + NR LSP QV LL +DP++I++++ R LL+L+C PV PN
Sbjct: 78 ADYWNFIPCDAQQEENYVNRRVLSPAQVLNLLNGVDPDFIEKYIPRKNLLYLNCFPVTPN 137
Query: 968 SLRVMETSHVFSDGPRLYFDERSMALRKVVELNKKMDELRDYQHDGALLCSHITGPVLDC 1147
RV E + S G RL FD+R+ + +K+V+ +EL + VLDC
Sbjct: 138 CHRVTEVPYAISSGSRLSFDDRTRSCKKLVDFRGTPNEL--------------SSRVLDC 183
Query: 1148 LHKSKLH-----NRPAAEV-------SATCKYGRKWLQDVVLGKRSDHSFRMVVVGDPKL 1291
L SKL+ N A++ +A G +W++DVVLGKR+D S R VVVGDP L
Sbjct: 184 LRISKLNPDKTPNSIFADIQQRKIGENACNSSGLRWIKDVVLGKRNDSSLRTVVVGDPDL 243
Query: 1292 RLGEIGIPSDICDKLFVAEHVNSYNLKKLNITCNSHLLTR-ELYARSKGKLKPLHKTGKL 1468
L E+GIP I + L V+E+VN N +KL C LL + ++ G L+K L
Sbjct: 244 ELSEVGIPCHIAESLQVSEYVNRQNREKLLYCCELRLLEKGKIDVCRNGSKVHLYKKEDL 303
Query: 1469 KVGDFFYRPLEDGDIVLINRPPSIHQHSLIAMNVKILQSQPALAMNPLSCAPFAGDFDGD 1648
++GD YRPL DGD VLINRPPSIHQHS+IA+ V++L + +NPL C+P GDFDGD
Sbjct: 304 QIGDKIYRPLADGDKVLINRPPSIHQHSMIALTVRVLPISSVVCINPLCCSPLRGDFDGD 363
Query: 1649 CLHGYVAQSELSRIELRELVSMESQLLNVQDGRXXXXXXXXXXXXAYLLTGRDVFLNKFE 1828
CLHGY+ QS +RIEL ELV+++ QL+N Q GR AYLL V LN ++
Sbjct: 364 CLHGYIPQSVTARIELNELVALDRQLINGQSGRNLLSLSQDSLTAAYLLMEDGVLLNVYQ 423
Query: 1829 MQQLEMLC---SYLAPCPAIVQSQEV-PPLWTGHQLLRALLSPCMYFGTES-GTPENCGE 1993
MQQL+ML L P PA+V++ LW+G Q+ LL + S G + GE
Sbjct: 424 MQQLQMLSISDKRLIP-PAVVKAPSSNSSLWSGKQIFSMLLPYDFDYSFPSDGVVVSDGE 482
Query: 1994 EILSSDLSFWVKKTLPNFVSSMFKCYGKKALDLLFSAQEVLCEWISMRGFTVSLNDIYLS 2173
+ SS+ S W++ + N S+ + Y K L+ L++AQ+VLCEW+SM GF+VSL+D+YLS
Sbjct: 483 LVSSSEASGWLRDSDYNVFQSLVEHYQGKTLNFLYTAQKVLCEWLSMTGFSVSLSDLYLS 542
Query: 2174 PDSYSRAKMIDEINYALEDAEDACVMKELIMDAEFESLRKCHNENEDALVC----LDYDS 2341
DSY+R MI+EI Y L+DAE AC K+L++D + L E+E+A+ L+Y+
Sbjct: 543 SDSYARKNMIEEIFYGLQDAEQACNFKQLLLDCYCDFLSGSIQESENAITVDADRLNYER 602
Query: 2342 SIHKPARLSQASVDAFRDVFYELQYAIRPYIGRENSILSMINAGSQGNMQKLVQQSACLG 2521
I A LSQASVDAFR VF +Q Y ++N+ L+M AGS+GN+ KLVQ S CLG
Sbjct: 603 QIS--AALSQASVDAFRQVFRNIQSLADKYACKDNAFLAMFKAGSKGNLLKLVQHSMCLG 660
Query: 2522 LQLAPGSLSFPMPDKLVHNLSNPRIEFHSCGMHQNSAGSATGQ-NYAVIRSSFVDGLNPI 2698
+Q + LS+ +P L N + S M + S YAV+ SSF+ GLNP+
Sbjct: 661 MQNSLVRLSYRLPRHLSCAAWNSQKWLDSIQMSSGTLESVQSYIPYAVVESSFLTGLNPL 720
Query: 2699 ECFDHAISIRPSLFKENVAKSGSLARKLMFYMRDLYMAYDGTVRSAYGQQLVQFSYGASK 2878
ECF H+++ R S F ++ G+L R+LMF+MRDL+ AYDGTVR+ YG QL+QFSY
Sbjct: 721 ECFVHSVTNRDSSFSDHADLPGTLTRRLMFFMRDLHDAYDGTVRNLYGNQLIQFSYD--- 777
Query: 2879 EKFIESEESHELFSDGNIESNGVGGQPVXXXXXXXXXXXXXXXXDLPTNSLEPSPLMNLK 3058
IE + S D + +GG+PV P + LE SPL+NLK
Sbjct: 778 ---IEEDSS----CDKGFQEYAIGGEPVGAISACAISEAAYSALGQPVSLLETSPLLNLK 830
Query: 3059 KILECXXXXXXXXXXXXXXXXXXXERWLYGFEYGALEVKNHLDRVLFSDLLTNFMIFYDA 3238
+LEC + +GFEY ALEVKN+L+R+LFS++++ MI +
Sbjct: 831 NVLECGSRKRNGDQTVSLFLSEKLGKQRHGFEYAALEVKNYLERLLFSNIVSTVMIIFTP 890
Query: 3239 Y-GEEGTNCSPWISHFHVDKERLVRKRLTIQAVIEKLETNYGSRRKKSGKVQLPKVHIRS 3415
+ G SPW+ HFH+DKE + R++L + ++I+ L Y S+RK S KV + I S
Sbjct: 891 HDGSSQEKYSPWVCHFHLDKEIVTRRKLKVHSIIDSLYQRYYSQRKDS-KVCFTNLKISS 949
Query: 3416 -QCCSF--LDEEG------KNDKTCCITVAV---SDNCITLETIKDSVIPDILQTLIKGF 3559
+ CS + +EG K + CITV + S N I L++++D VIP +L T IKGF
Sbjct: 950 NRKCSADSMAKEGEDTSIDKKEGDDCITVTIVENSKNPIQLDSVRDLVIPFLLGTAIKGF 1009
Query: 3560 LEFKKVDIIWGSQIDS-------NGELFVKVTRSQSCHVETFWSNLTDACIPIMHLIDWE 3718
L+ KKVD++W +Q +GEL+++VT S FW L + C IMH+IDW
Sbjct: 1010 LDVKKVDVLWNNQSKVKNSCNGFSGELYLRVTLSSEGSRGRFWGVLLNLCHKIMHIIDWT 1069
Query: 3719 RSHPDDICGVYNVCGIEGAWKYLFRALKSTTSDIGRSIHQEHLLLVADCLTVSGKFHGLS 3898
RSHPD+I + GI+ W+Y F +L S TSD G+SI +HL LVA+ L+ SG+F GL+
Sbjct: 1070 RSHPDNINHFSSAYGIDAGWQYFFNSLASATSDTGKSILPKHLCLVANSLSCSGEFVGLN 1129
Query: 3899 ARGLTVQRKSASISSPFNQACFSNPRDRFINAAKQGSIDNLYGTVDALAWGKEATLGTGG 4078
A+G+ +QRK AS+SSPF QACF+NP FI AAK G DNL G++DALAWG ++GT G
Sbjct: 1130 AKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGVTDNLQGSLDALAWGNCLSMGTSG 1189
Query: 4079 PFEIIYSGKVHNPKKSESIYETLNCMRSDKFHHDNRPAYRNITAKWKGKSKFAKAHSNTG 4258
F+IIYS KV KS ++YE L ++ F K ++ G
Sbjct: 1190 MFDIIYSEKV---AKSGNVYELL-------------------------EASFDKPNNKAG 1221
Query: 4259 YLGSNLMLNKVNLEGLWNEEFVKNPGDQANCHPELHASDKSELTTFGLNSSPNEGKICSW 4438
+K E + G Q K+ L F +
Sbjct: 1222 THLHKYSSDKCGSEFRHKNGYALKEGKQW----------KTILRNF-----------VTV 1260
Query: 4439 LDVVDMSSSLRAILNEYQMGASLTEGHKSLLMEALNYHPKREAKLGIGVQDIKIGHSLSH 4618
D+ ++ + R ILN+Y + L+E +S ++ LN+HP++ K GIG QDIK+G +
Sbjct: 1261 NDIQKLTFASRCILNKYSIDELLSESDRSTMLRVLNFHPRKSEKFGIGPQDIKVGWHPKY 1320
Query: 4619 PDSRCFILFREDGTKDDVSYHKCVIGAAKQISPEIGLWAENKLYRRFWS 4765
DSRCF + R DGT +D SY KC++GA + P+ ++K+ + WS
Sbjct: 1321 KDSRCFHIVRIDGTVEDFSYRKCILGALDIVDPK-----KSKIQEKKWS 1364