BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Stemona21_contig00013249
         (3918 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su...  2266   0.0  
ref|XP_006859038.1| hypothetical protein AMTR_s00068p00181410 [A...  2239   0.0  
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta...  2231   0.0  
ref|XP_006650345.1| PREDICTED: DNA-directed RNA polymerase II su...  2230   0.0  
ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II su...  2228   0.0  
gb|EXC18122.1| DNA-directed RNA polymerase II subunit [Morus not...  2227   0.0  
gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japo...  2226   0.0  
gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptid...  2226   0.0  
ref|XP_004982317.1| PREDICTED: DNA-directed RNA polymerase II su...  2225   0.0  
ref|XP_004982316.1| PREDICTED: DNA-directed RNA polymerase II su...  2225   0.0  
gb|EOY28253.1| DNA-directed RNA polymerase family protein isofor...  2224   0.0  
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode...  2222   0.0  
gb|ESW20162.1| hypothetical protein PHAVU_006G185800g [Phaseolus...  2219   0.0  
ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II su...  2217   0.0  
ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citr...  2216   0.0  
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ...  2216   0.0  
ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II su...  2214   0.0  
ref|XP_004499217.1| PREDICTED: DNA-directed RNA polymerase II su...  2212   0.0  
gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia...  2209   0.0  
ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II su...  2209   0.0  

>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
            vinifera] gi|147841183|emb|CAN72948.1| hypothetical
            protein VITISV_033708 [Vitis vinifera]
            gi|302143287|emb|CBI21848.3| unnamed protein product
            [Vitis vinifera]
          Length = 1193

 Score = 2266 bits (5872), Expect = 0.0
 Identities = 1122/1172 (95%), Positives = 1144/1172 (97%), Gaps = 1/1172 (0%)
 Frame = -2

Query: 3641 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPARHSD 3462
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP R SD
Sbjct: 22   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSD 81

Query: 3461 FVETIYKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKIIKKGHD 3282
            F+ETIYKISFGQIYLS+PMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK+IIKKGHD
Sbjct: 82   FLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRIIKKGHD 141

Query: 3281 CEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFVINGSEKVL 3102
             EEVTETQ+FTKVFIGKVPIMLRSSYCT+YQNSEKDLTELGECPYDQGGYF+INGSEKVL
Sbjct: 142  LEEVTETQEFTKVFIGKVPIMLRSSYCTVYQNSEKDLTELGECPYDQGGYFIINGSEKVL 201

Query: 3101 IAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAESQNRPASSMFVRMLSRTSAKGGSSGQY 2922
            IAQEKMSTNHVYVFKKRQPNK+AYVAEVRSMAESQNRP SSMFVRMLSRTSAKGGSSGQY
Sbjct: 202  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQY 261

Query: 2921 IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 2742
            IRATLPYIR +IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ
Sbjct: 262  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 321

Query: 2741 VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 2562
            VALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC
Sbjct: 322  VALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 381

Query: 2561 ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 2382
            ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGKDVNLQFAI
Sbjct: 382  ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 441

Query: 2381 KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLA 2202
            KAKTITSGLKYSLATGNWGQAN AGTRAGVSQVLNRLT+ASTLSHLRRLNSPIGREGKLA
Sbjct: 442  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 501

Query: 2201 KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEI 2022
            KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEWSTENFEEI
Sbjct: 502  KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEI 561

Query: 2021 SPAVIPQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTD 1842
            SPAVIPQ+TKIFVNGCWVGIHRNPDLLVKTLRQLRRQ+DVNTEVGVIRDIRLKELRLYTD
Sbjct: 562  SPAVIPQSTKIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTD 621

Query: 1841 YGRCSRPLFIVEKQRLLIKKKDIRALQQREAPEE-GWHDLVAKGFXXXXXXXXXXXXXXX 1665
            YGRCSRPLFIVEKQRLLIKK+DIRALQ RE+PE+ GWHDLV+KGF               
Sbjct: 622  YGRCSRPLFIVEKQRLLIKKRDIRALQLRESPEDGGWHDLVSKGFIEYVDTEEEETTMIS 681

Query: 1664 XXINDLVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 1485
              INDL++AR NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 682  MTINDLISARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 741

Query: 1484 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 1305
            MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED
Sbjct: 742  MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 801

Query: 1304 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDG 1125
            SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDG
Sbjct: 802  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDG 861

Query: 1124 LAPPGTRVSGEDVIIGKTTPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNAD 945
            LAPPGTRVSGEDVIIGKTTPI QDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNAD
Sbjct: 862  LAPPGTRVSGEDVIIGKTTPISQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNAD 921

Query: 944  GLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 765
            GLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS
Sbjct: 922  GLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 981

Query: 764  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 585
            RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR
Sbjct: 982  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1041

Query: 584  RLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 405
            RL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI
Sbjct: 1042 RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1101

Query: 404  AHGAAHFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 225
            AHGAAHFLKERLFDQSDAYRVHVCE+CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC
Sbjct: 1102 AHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1161

Query: 224  KLLFQELMAMAIAPRMLTKEVKPSKDQKKKGA 129
            KLLFQELMAMAIAPRMLTKEVKP KDQKKKGA
Sbjct: 1162 KLLFQELMAMAIAPRMLTKEVKPPKDQKKKGA 1193


>ref|XP_006859038.1| hypothetical protein AMTR_s00068p00181410 [Amborella trichopoda]
            gi|548863150|gb|ERN20505.1| hypothetical protein
            AMTR_s00068p00181410 [Amborella trichopoda]
          Length = 1190

 Score = 2239 bits (5802), Expect = 0.0
 Identities = 1105/1171 (94%), Positives = 1135/1171 (96%)
 Frame = -2

Query: 3641 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPARHSD 3462
            ITQEDAWAVISAYF+EKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP R +D
Sbjct: 16   ITQEDAWAVISAYFDEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAD 75

Query: 3461 FVETIYKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKIIKKGHD 3282
            FVETIYKISFGQIYLS+PMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK++IKKGHD
Sbjct: 76   FVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 135

Query: 3281 CEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFVINGSEKVL 3102
             EE+ E Q+ TKVFIGKVPIMLRSSYCTL+QNSEKDLTELGECPYDQGGYF+INGSEKVL
Sbjct: 136  HEELAEQQELTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVL 195

Query: 3101 IAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAESQNRPASSMFVRMLSRTSAKGGSSGQY 2922
            IAQEKMSTNHVYVFKKRQPNK+AYVAEVRSMAESQN+P SSMFVRMLSRTS+KGGSSGQY
Sbjct: 196  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNKPPSSMFVRMLSRTSSKGGSSGQY 255

Query: 2921 IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 2742
            IRATLPYIRA+IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ
Sbjct: 256  IRATLPYIRAEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 315

Query: 2741 VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 2562
            VALDYIGKRG+TVGVT+EKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLL+C
Sbjct: 316  VALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLVC 375

Query: 2561 ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 2382
            ALGRRPEDDRDHYGNKRLDLAGPLLG LFR +FRKLTRDVRSYVQKCVDNGK+VNLQFAI
Sbjct: 376  ALGRRPEDDRDHYGNKRLDLAGPLLGSLFRTMFRKLTRDVRSYVQKCVDNGKEVNLQFAI 435

Query: 2381 KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLA 2202
            KAKTITSGLKYSLATGNWGQAN AGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLA
Sbjct: 436  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLA 495

Query: 2201 KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEI 2022
            KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEWSTENFEEI
Sbjct: 496  KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEI 555

Query: 2021 SPAVIPQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTD 1842
            SPAVIPQATKIFVNGCWVGIHRNP+LLVKTLRQLRRQ+DVNTEVGVIRDIRLKELRLYTD
Sbjct: 556  SPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTD 615

Query: 1841 YGRCSRPLFIVEKQRLLIKKKDIRALQQREAPEEGWHDLVAKGFXXXXXXXXXXXXXXXX 1662
            YGRCSRPLFIVEKQRLLIKK DIRALQQRE+P+EGWHDLVAKGF                
Sbjct: 616  YGRCSRPLFIVEKQRLLIKKSDIRALQQRESPDEGWHDLVAKGFIEYVDTEEEETTMISM 675

Query: 1661 XINDLVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 1482
             I+DLV+AR NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 676  TISDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 735

Query: 1481 GIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 1302
            GIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDS
Sbjct: 736  GIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDS 795

Query: 1301 VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGL 1122
            VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGL
Sbjct: 796  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGL 855

Query: 1121 APPGTRVSGEDVIIGKTTPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADG 942
            APPGTRVSGEDVIIGKTTPI Q++ QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADG
Sbjct: 856  APPGTRVSGEDVIIGKTTPITQEEMQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADG 915

Query: 941  LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 762
            LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR
Sbjct: 916  LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 975

Query: 761  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 582
            MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR
Sbjct: 976  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1035

Query: 581  LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 402
            LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA
Sbjct: 1036 LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1095

Query: 401  HGAAHFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 222
            HGAAHFLKERLFDQSDAYRVHVCE+CGLIAIANLKKNSFECRGCKNKTDI+QVHIPYACK
Sbjct: 1096 HGAAHFLKERLFDQSDAYRVHVCEQCGLIAIANLKKNSFECRGCKNKTDIIQVHIPYACK 1155

Query: 221  LLFQELMAMAIAPRMLTKEVKPSKDQKKKGA 129
            LLFQELMAMAIAPRM TKE K  KD KKKGA
Sbjct: 1156 LLFQELMAMAIAPRMFTKEEKKPKDHKKKGA 1186


>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 1194

 Score = 2231 bits (5780), Expect = 0.0
 Identities = 1102/1172 (94%), Positives = 1135/1172 (96%), Gaps = 1/1172 (0%)
 Frame = -2

Query: 3641 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPARHSD 3462
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP   SD
Sbjct: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 82

Query: 3461 FVETIYKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKIIKKGHD 3282
            F ETIYKISFGQIYLS+PMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK++IKKGHD
Sbjct: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142

Query: 3281 CEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFVINGSEKVL 3102
             EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYF+INGSEKVL
Sbjct: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202

Query: 3101 IAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAESQNRPASSMFVRMLSRTSAKGGSSGQY 2922
            IAQEKMSTNHVYVFKKRQPNK+AYVAEVRSMAESQNRP S+MFVRMLSRTSAKGGSSGQY
Sbjct: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 262

Query: 2921 IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 2742
            IRATLPYIR +IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ
Sbjct: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 322

Query: 2741 VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 2562
            VALDYIGKRGATVGVT+EKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC
Sbjct: 323  VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 382

Query: 2561 ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 2382
            ALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI
Sbjct: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 442

Query: 2381 KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLA 2202
            KAKTITSGLKYSLATGNWGQAN AGTRAGVSQVLNRLT+ASTLSHLRRLNSPIGREGKLA
Sbjct: 443  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502

Query: 2201 KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEI 2022
            KPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEI
Sbjct: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562

Query: 2021 SPAVIPQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTD 1842
            SPAVIPQATKIFVNGCWVGIHR+PD+LVKTLR+LRR++DVNTEVGV+RDIRLKELR+YTD
Sbjct: 563  SPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 622

Query: 1841 YGRCSRPLFIVEKQRLLIKKKDIRALQQREAPEE-GWHDLVAKGFXXXXXXXXXXXXXXX 1665
            YGRCSRPLFIVEKQRLLIKKKDI ALQQRE+ EE GWHDLVAKGF               
Sbjct: 623  YGRCSRPLFIVEKQRLLIKKKDIHALQQRESSEEGGWHDLVAKGFIEYIDTEEEETTMIS 682

Query: 1664 XXINDLVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 1485
              I+DLV AR NPEEAYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 683  MTIHDLVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 742

Query: 1484 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 1305
            MGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED
Sbjct: 743  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 802

Query: 1304 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDG 1125
            SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDG
Sbjct: 803  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDG 862

Query: 1124 LAPPGTRVSGEDVIIGKTTPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNAD 945
            LAPPGTRVSGEDVIIGKTTPI Q+++QGQ++RYTRRDHS SLRHSE+G+VDQVLLTTNAD
Sbjct: 863  LAPPGTRVSGEDVIIGKTTPIAQEEAQGQSARYTRRDHSISLRHSETGIVDQVLLTTNAD 922

Query: 944  GLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 765
            GLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS
Sbjct: 923  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982

Query: 764  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 585
            RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR
Sbjct: 983  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1042

Query: 584  RLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 405
            RL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI
Sbjct: 1043 RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1102

Query: 404  AHGAAHFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 225
            AHGAAHFLKERLFDQSDAYRVHVCE+CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC
Sbjct: 1103 AHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1162

Query: 224  KLLFQELMAMAIAPRMLTKEVKPSKDQKKKGA 129
            KLLFQELMAMAIAPRMLTK+VKP+KDQKKKGA
Sbjct: 1163 KLLFQELMAMAIAPRMLTKDVKPTKDQKKKGA 1194


>ref|XP_006650345.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Oryza
            brachyantha]
          Length = 1184

 Score = 2230 bits (5779), Expect = 0.0
 Identities = 1097/1169 (93%), Positives = 1131/1169 (96%)
 Frame = -2

Query: 3641 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPARHSD 3462
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP R ++
Sbjct: 16   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAE 75

Query: 3461 FVETIYKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKIIKKGHD 3282
            F ET++KISFGQIYLS+PMMTE+DGETATLFPK+ARLRNLTYSAPLYVDV+ +++KKGHD
Sbjct: 76   FAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMKKGHD 135

Query: 3281 CEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFVINGSEKVL 3102
            CEEVTET ++ KVFIGKVPIMLRSSYCTL+Q SEKDLTELGECPYDQGGYF+INGSEKVL
Sbjct: 136  CEEVTETMEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFIINGSEKVL 195

Query: 3101 IAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAESQNRPASSMFVRMLSRTSAKGGSSGQY 2922
            IAQEKMSTNHVYVFKKRQPNK+AYVAEVRSMAE+QNRPASSMFVRMLSR  AKGGSSGQY
Sbjct: 196  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQY 255

Query: 2921 IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 2742
            IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ
Sbjct: 256  IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 315

Query: 2741 VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 2562
            VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYIIHRLL+C
Sbjct: 316  VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMC 375

Query: 2561 ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 2382
            ALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGK+VNLQFAI
Sbjct: 376  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAI 435

Query: 2381 KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLA 2202
            KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLT+ASTLSHLRRLNSPIGREGKLA
Sbjct: 436  KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 495

Query: 2201 KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEI 2022
            KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEI
Sbjct: 496  KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEI 555

Query: 2021 SPAVIPQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTD 1842
            SPAVIPQA KIFVNGCWVGIHRNPDLLVKTLR+LRRQIDVNTEVGV+RDIRLKELRLYTD
Sbjct: 556  SPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTD 615

Query: 1841 YGRCSRPLFIVEKQRLLIKKKDIRALQQREAPEEGWHDLVAKGFXXXXXXXXXXXXXXXX 1662
            YGRCSRPLFIVE QRLLIKKK IRALQQRE PEEGWHDLVAKGF                
Sbjct: 616  YGRCSRPLFIVENQRLLIKKKHIRALQQRETPEEGWHDLVAKGFIEYIDTEEEETTMISM 675

Query: 1661 XINDLVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 1482
             INDLVNAR NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 676  TINDLVNARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 735

Query: 1481 GIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 1302
            GIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS
Sbjct: 736  GIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 795

Query: 1301 VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGL 1122
            VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE+FGRPNRENTMGMRHGSYDKLDDDGL
Sbjct: 796  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGL 855

Query: 1121 APPGTRVSGEDVIIGKTTPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADG 942
            APPGTRVSGEDVIIGKT+PIPQDD+QGQA+RYT+RDHSTSLRHSESGMVDQVLLTTNADG
Sbjct: 856  APPGTRVSGEDVIIGKTSPIPQDDAQGQATRYTKRDHSTSLRHSESGMVDQVLLTTNADG 915

Query: 941  LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 762
            LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSR
Sbjct: 916  LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSR 975

Query: 761  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 582
            MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+
Sbjct: 976  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRK 1035

Query: 581  LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 402
            LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA
Sbjct: 1036 LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1095

Query: 401  HGAAHFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 222
            HGAA FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK
Sbjct: 1096 HGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1155

Query: 221  LLFQELMAMAIAPRMLTKEVKPSKDQKKK 135
            LLFQELMAMAIAPRMLT + K  KDQK++
Sbjct: 1156 LLFQELMAMAIAPRMLTNDNKTGKDQKRR 1184


>ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Brachypodium distachyon]
          Length = 1228

 Score = 2228 bits (5774), Expect = 0.0
 Identities = 1095/1169 (93%), Positives = 1132/1169 (96%)
 Frame = -2

Query: 3641 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPARHSD 3462
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP R ++
Sbjct: 60   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAE 119

Query: 3461 FVETIYKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKIIKKGHD 3282
            F ET++KISFGQIYLS+PMMTE+DGETATLFPK+ARLRNLTYSAPLYVDV+ +++KKGHD
Sbjct: 120  FAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVVKKGHD 179

Query: 3281 CEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFVINGSEKVL 3102
            CEEVTET ++ KVFIGKVPIMLRSSYCTL+Q SEKDLTELGECPYDQGGYFVINGSEKVL
Sbjct: 180  CEEVTETMEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFVINGSEKVL 239

Query: 3101 IAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAESQNRPASSMFVRMLSRTSAKGGSSGQY 2922
            IAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAE+QNRPASSMFVRMLSR  AKGGSSGQY
Sbjct: 240  IAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQY 299

Query: 2921 IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 2742
            IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ
Sbjct: 300  IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 359

Query: 2741 VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 2562
            VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYIIHRLL+C
Sbjct: 360  VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMC 419

Query: 2561 ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 2382
            ALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI
Sbjct: 420  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 479

Query: 2381 KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLA 2202
            KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLT+ASTLSHLRRLNSPIGREGKLA
Sbjct: 480  KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 539

Query: 2201 KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEI 2022
            KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEI
Sbjct: 540  KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEI 599

Query: 2021 SPAVIPQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTD 1842
            SPAVIPQA KIFVNGCWVGIHRNPDLLVKTLR+LRRQIDVNTEVGV+RDIRLKELRLYTD
Sbjct: 600  SPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTD 659

Query: 1841 YGRCSRPLFIVEKQRLLIKKKDIRALQQREAPEEGWHDLVAKGFXXXXXXXXXXXXXXXX 1662
            YGRCSRPLFIV+ QRLLIKKK IRALQQRE P+EGWHDLVAKGF                
Sbjct: 660  YGRCSRPLFIVDGQRLLIKKKHIRALQQRETPDEGWHDLVAKGFIEYIDTEEEETTMISM 719

Query: 1661 XINDLVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 1482
             INDLV+AR NP+EAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 720  TINDLVSARNNPQEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 779

Query: 1481 GIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 1302
            GIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS
Sbjct: 780  GIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 839

Query: 1301 VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGL 1122
            VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE+FGRPNRENTMGMRHGSYDKLDDDGL
Sbjct: 840  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGL 899

Query: 1121 APPGTRVSGEDVIIGKTTPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADG 942
            APPGTRVSGEDVIIGKT+PIPQDD+QGQA+RY++RDHSTSLRHSESGMVDQVLLTTNADG
Sbjct: 900  APPGTRVSGEDVIIGKTSPIPQDDAQGQATRYSKRDHSTSLRHSESGMVDQVLLTTNADG 959

Query: 941  LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 762
            LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSR
Sbjct: 960  LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSR 1019

Query: 761  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 582
            MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+
Sbjct: 1020 MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRK 1079

Query: 581  LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 402
            L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA
Sbjct: 1080 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1139

Query: 401  HGAAHFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 222
            HGAA FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK
Sbjct: 1140 HGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1199

Query: 221  LLFQELMAMAIAPRMLTKEVKPSKDQKKK 135
            LLFQELMAMAIAPRMLT ++K  KDQKK+
Sbjct: 1200 LLFQELMAMAIAPRMLTHDIKSGKDQKKR 1228


>gb|EXC18122.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
          Length = 1193

 Score = 2227 bits (5770), Expect = 0.0
 Identities = 1101/1173 (93%), Positives = 1133/1173 (96%), Gaps = 2/1173 (0%)
 Frame = -2

Query: 3641 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPARHSD 3462
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP   SD
Sbjct: 21   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 80

Query: 3461 FVETIYKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKIIKKGHD 3282
            FVETIYKISFGQIYLS+PMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK++IKKGHD
Sbjct: 81   FVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 140

Query: 3281 CEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFVINGSEKVL 3102
             EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYF+INGSEKVL
Sbjct: 141  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 200

Query: 3101 IAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAESQNRPASSMFVRMLSRTSAKGGSSGQY 2922
            IAQEKMSTNHVYVFKKRQPNK+AYVAEVRSMAESQNRP S+MFVRMLSRTS+KGGSSGQY
Sbjct: 201  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQY 260

Query: 2921 IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 2742
            IRATLPYIRA+IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ
Sbjct: 261  IRATLPYIRAEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 320

Query: 2741 VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 2562
            VALDYIGKRGATVGVT+EKRIKYAKEILQKEMLPHVG GE+CETKKAYYFGYIIHRLLLC
Sbjct: 321  VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGTGEFCETKKAYYFGYIIHRLLLC 380

Query: 2561 ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 2382
            ALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAI
Sbjct: 381  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAI 440

Query: 2381 KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLA 2202
            KAKTITSGLKYSLATGNWGQAN AGTRAGVSQVLNRLT+ASTLSHLRRLNSPIGREGKLA
Sbjct: 441  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 500

Query: 2201 KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEI 2022
            KPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEI
Sbjct: 501  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 560

Query: 2021 SPAVIPQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTD 1842
            SPAVIPQATKIFVNGCWVGIHR+PD+LVKTLR+LRR++DVNTEVGV+RDIRLKELR+YTD
Sbjct: 561  SPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 620

Query: 1841 YGRCSRPLFIVEKQRLLIKKKDIRALQQREAPEE-GWHDLVAKGFXXXXXXXXXXXXXXX 1665
            YGRCSRPLFIVEKQRLLIKK+DIRALQQRE PEE GWHDLV+ GF               
Sbjct: 621  YGRCSRPLFIVEKQRLLIKKRDIRALQQRETPEEAGWHDLVSNGFIEYIDTEEEETTMIS 680

Query: 1664 XXINDLVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 1485
              INDLV AR NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 681  MTINDLVQARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 740

Query: 1484 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 1305
            MGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED
Sbjct: 741  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 800

Query: 1304 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDG 1125
            SVIMNQS+IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDG
Sbjct: 801  SVIMNQSAIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 860

Query: 1124 LAPPGTRVSGEDVIIGKTTPIPQDDSQGQ-ASRYTRRDHSTSLRHSESGMVDQVLLTTNA 948
            LAPPGTRVSGEDVIIGKTTPI QD++QGQ ASRYTRRDHS SLRHSE+G+VDQVLLTTNA
Sbjct: 861  LAPPGTRVSGEDVIIGKTTPIAQDEAQGQAASRYTRRDHSISLRHSENGIVDQVLLTTNA 920

Query: 947  DGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 768
            DGLRFVKVR+RS+RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP
Sbjct: 921  DGLRFVKVRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 980

Query: 767  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 588
            SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG
Sbjct: 981  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1040

Query: 587  RRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 408
            RRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM
Sbjct: 1041 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1100

Query: 407  IAHGAAHFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 228
            IAHGAAHFLKERLFDQSDAYRVHVCE+CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA
Sbjct: 1101 IAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 1160

Query: 227  CKLLFQELMAMAIAPRMLTKEVKPSKDQKKKGA 129
            CKLLFQELMAMAIAPRMLTK+VKP  DQKKKGA
Sbjct: 1161 CKLLFQELMAMAIAPRMLTKDVKPLNDQKKKGA 1193


>gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japonica Group]
          Length = 1218

 Score = 2226 bits (5767), Expect = 0.0
 Identities = 1093/1169 (93%), Positives = 1131/1169 (96%)
 Frame = -2

Query: 3641 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPARHSD 3462
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP R ++
Sbjct: 50   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAE 109

Query: 3461 FVETIYKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKIIKKGHD 3282
            F ET++KISFGQIYLS+PMMTE+DGETATLFPK+ARLRNLTYSAPLYVDV+ +++KKGHD
Sbjct: 110  FAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMKKGHD 169

Query: 3281 CEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFVINGSEKVL 3102
            CEEVTET ++ KVFIGKVPIMLRSSYCTL+Q SEKDLTELGECPYDQGGYF+INGSEKVL
Sbjct: 170  CEEVTETMEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFIINGSEKVL 229

Query: 3101 IAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAESQNRPASSMFVRMLSRTSAKGGSSGQY 2922
            IAQEKMSTNHVYVFKKRQPNK+AYVAEVRSMAE+QNRPASSMFVRMLSR  AKGGSSGQY
Sbjct: 230  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQY 289

Query: 2921 IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 2742
            IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ
Sbjct: 290  IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 349

Query: 2741 VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 2562
            VALDYIGKRGATVGVT+EKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYIIHRLL+C
Sbjct: 350  VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMC 409

Query: 2561 ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 2382
            ALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGK+VNLQFAI
Sbjct: 410  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAI 469

Query: 2381 KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLA 2202
            KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLT+ASTLSHLRRLNSPIGREGKLA
Sbjct: 470  KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 529

Query: 2201 KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEI 2022
            KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEI
Sbjct: 530  KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEI 589

Query: 2021 SPAVIPQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTD 1842
            SPAVIPQA KIFVNGCWVGIHRNPDLLVKTLR+LRRQIDVNTEVGV+RDIRLKELRLYTD
Sbjct: 590  SPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTD 649

Query: 1841 YGRCSRPLFIVEKQRLLIKKKDIRALQQREAPEEGWHDLVAKGFXXXXXXXXXXXXXXXX 1662
            YGRCSRPLFIVE QRLLIKK+ IRALQQRE PEEGWHDLVAKGF                
Sbjct: 650  YGRCSRPLFIVENQRLLIKKRHIRALQQRETPEEGWHDLVAKGFIEYIDTEEEETTMISM 709

Query: 1661 XINDLVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 1482
             INDL+ AR NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 710  TINDLIGARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 769

Query: 1481 GIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 1302
            GIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS
Sbjct: 770  GIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 829

Query: 1301 VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGL 1122
            VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE+FGRPNRENTMGMRHGSYDKLDDDGL
Sbjct: 830  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGL 889

Query: 1121 APPGTRVSGEDVIIGKTTPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADG 942
            APPGTRVSGEDVIIGKT+PIPQDD+QGQA+RYT+RDHSTSLRHSESGMVDQVLLTTNADG
Sbjct: 890  APPGTRVSGEDVIIGKTSPIPQDDAQGQATRYTKRDHSTSLRHSESGMVDQVLLTTNADG 949

Query: 941  LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 762
            LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSR
Sbjct: 950  LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSR 1009

Query: 761  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 582
            MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+
Sbjct: 1010 MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRK 1069

Query: 581  LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 402
            L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA
Sbjct: 1070 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1129

Query: 401  HGAAHFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 222
            HGAA FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK
Sbjct: 1130 HGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1189

Query: 221  LLFQELMAMAIAPRMLTKEVKPSKDQKKK 135
            LLFQELMAMAIAPRMLT++ K  KDQKK+
Sbjct: 1190 LLFQELMAMAIAPRMLTQDNKTGKDQKKR 1218


>gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative,
            expressed [Oryza sativa Japonica Group]
            gi|125545063|gb|EAY91202.1| hypothetical protein
            OsI_12811 [Oryza sativa Indica Group]
          Length = 1222

 Score = 2226 bits (5767), Expect = 0.0
 Identities = 1093/1169 (93%), Positives = 1131/1169 (96%)
 Frame = -2

Query: 3641 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPARHSD 3462
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP R ++
Sbjct: 54   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAE 113

Query: 3461 FVETIYKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKIIKKGHD 3282
            F ET++KISFGQIYLS+PMMTE+DGETATLFPK+ARLRNLTYSAPLYVDV+ +++KKGHD
Sbjct: 114  FAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMKKGHD 173

Query: 3281 CEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFVINGSEKVL 3102
            CEEVTET ++ KVFIGKVPIMLRSSYCTL+Q SEKDLTELGECPYDQGGYF+INGSEKVL
Sbjct: 174  CEEVTETMEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFIINGSEKVL 233

Query: 3101 IAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAESQNRPASSMFVRMLSRTSAKGGSSGQY 2922
            IAQEKMSTNHVYVFKKRQPNK+AYVAEVRSMAE+QNRPASSMFVRMLSR  AKGGSSGQY
Sbjct: 234  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQY 293

Query: 2921 IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 2742
            IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ
Sbjct: 294  IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 353

Query: 2741 VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 2562
            VALDYIGKRGATVGVT+EKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYIIHRLL+C
Sbjct: 354  VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMC 413

Query: 2561 ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 2382
            ALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGK+VNLQFAI
Sbjct: 414  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAI 473

Query: 2381 KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLA 2202
            KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLT+ASTLSHLRRLNSPIGREGKLA
Sbjct: 474  KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 533

Query: 2201 KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEI 2022
            KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEI
Sbjct: 534  KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEI 593

Query: 2021 SPAVIPQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTD 1842
            SPAVIPQA KIFVNGCWVGIHRNPDLLVKTLR+LRRQIDVNTEVGV+RDIRLKELRLYTD
Sbjct: 594  SPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTD 653

Query: 1841 YGRCSRPLFIVEKQRLLIKKKDIRALQQREAPEEGWHDLVAKGFXXXXXXXXXXXXXXXX 1662
            YGRCSRPLFIVE QRLLIKK+ IRALQQRE PEEGWHDLVAKGF                
Sbjct: 654  YGRCSRPLFIVENQRLLIKKRHIRALQQRETPEEGWHDLVAKGFIEYIDTEEEETTMISM 713

Query: 1661 XINDLVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 1482
             INDL+ AR NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 714  TINDLIGARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 773

Query: 1481 GIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 1302
            GIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS
Sbjct: 774  GIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 833

Query: 1301 VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGL 1122
            VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE+FGRPNRENTMGMRHGSYDKLDDDGL
Sbjct: 834  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGL 893

Query: 1121 APPGTRVSGEDVIIGKTTPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADG 942
            APPGTRVSGEDVIIGKT+PIPQDD+QGQA+RYT+RDHSTSLRHSESGMVDQVLLTTNADG
Sbjct: 894  APPGTRVSGEDVIIGKTSPIPQDDAQGQATRYTKRDHSTSLRHSESGMVDQVLLTTNADG 953

Query: 941  LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 762
            LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSR
Sbjct: 954  LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSR 1013

Query: 761  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 582
            MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+
Sbjct: 1014 MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRK 1073

Query: 581  LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 402
            L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA
Sbjct: 1074 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1133

Query: 401  HGAAHFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 222
            HGAA FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK
Sbjct: 1134 HGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1193

Query: 221  LLFQELMAMAIAPRMLTKEVKPSKDQKKK 135
            LLFQELMAMAIAPRMLT++ K  KDQKK+
Sbjct: 1194 LLFQELMAMAIAPRMLTQDNKTGKDQKKR 1222


>ref|XP_004982317.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like isoform
            X2 [Setaria italica]
          Length = 1190

 Score = 2225 bits (5766), Expect = 0.0
 Identities = 1092/1169 (93%), Positives = 1131/1169 (96%)
 Frame = -2

Query: 3641 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPARHSD 3462
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP R ++
Sbjct: 22   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAE 81

Query: 3461 FVETIYKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKIIKKGHD 3282
            F ET++KISFGQIYLS+PMMTE+DGETATLFPK+ARLRNLTYSAPLYVDV+ +++KKGHD
Sbjct: 82   FAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMKKGHD 141

Query: 3281 CEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFVINGSEKVL 3102
            CEEVTET D+ KVFIGKVPIMLRSSYCTLYQ SEKDLTELGECPYDQGGYF+INGSEKVL
Sbjct: 142  CEEVTETSDYPKVFIGKVPIMLRSSYCTLYQQSEKDLTELGECPYDQGGYFIINGSEKVL 201

Query: 3101 IAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAESQNRPASSMFVRMLSRTSAKGGSSGQY 2922
            IAQEKMSTNHVYVFKKRQPNKF+YVAEVRSMAE+QNRPASSMFVRMLSR  AKGGSSGQY
Sbjct: 202  IAQEKMSTNHVYVFKKRQPNKFSYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQY 261

Query: 2921 IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 2742
            IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ
Sbjct: 262  IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 321

Query: 2741 VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 2562
            VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYIIHRLL+C
Sbjct: 322  VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMC 381

Query: 2561 ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 2382
            ALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGK+VNLQFAI
Sbjct: 382  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAI 441

Query: 2381 KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLA 2202
            KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLT+ASTLSHLRRLNSPIGREGKLA
Sbjct: 442  KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 501

Query: 2201 KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEI 2022
            KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEI
Sbjct: 502  KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEI 561

Query: 2021 SPAVIPQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTD 1842
            SPAVIPQA KIFVNGCWVGIHRNPDLLVKTLR+LRRQIDVNTEVGV+RDIRLKELRLYTD
Sbjct: 562  SPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTD 621

Query: 1841 YGRCSRPLFIVEKQRLLIKKKDIRALQQREAPEEGWHDLVAKGFXXXXXXXXXXXXXXXX 1662
            YGRCSRPLFIVE QRLLIKK  IRALQQRE P+EGWH+LV+KG+                
Sbjct: 622  YGRCSRPLFIVENQRLLIKKAHIRALQQRETPDEGWHELVSKGYIEYIDTEEEETTMISM 681

Query: 1661 XINDLVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 1482
             INDL+NAR NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 682  TINDLINARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 741

Query: 1481 GIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 1302
            GIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDS
Sbjct: 742  GIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDS 801

Query: 1301 VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGL 1122
            VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE+FGRPNRENTMGMRHGSYDKLDDDGL
Sbjct: 802  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGL 861

Query: 1121 APPGTRVSGEDVIIGKTTPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADG 942
            APPGTRVSGEDVIIGKT+PIPQDD+QGQASRY++RDHSTSLRHSESGMVDQVLLTTNADG
Sbjct: 862  APPGTRVSGEDVIIGKTSPIPQDDAQGQASRYSKRDHSTSLRHSESGMVDQVLLTTNADG 921

Query: 941  LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 762
            LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSR
Sbjct: 922  LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSR 981

Query: 761  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 582
            MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+
Sbjct: 982  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRK 1041

Query: 581  LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 402
            L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA
Sbjct: 1042 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1101

Query: 401  HGAAHFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 222
            HGAA FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK
Sbjct: 1102 HGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1161

Query: 221  LLFQELMAMAIAPRMLTKEVKPSKDQKKK 135
            LLFQELMAMAIAPRMLT ++K  KDQKK+
Sbjct: 1162 LLFQELMAMAIAPRMLTHDMKTGKDQKKR 1190


>ref|XP_004982316.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like isoform
            X1 [Setaria italica]
          Length = 1226

 Score = 2225 bits (5766), Expect = 0.0
 Identities = 1092/1169 (93%), Positives = 1131/1169 (96%)
 Frame = -2

Query: 3641 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPARHSD 3462
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP R ++
Sbjct: 58   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAE 117

Query: 3461 FVETIYKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKIIKKGHD 3282
            F ET++KISFGQIYLS+PMMTE+DGETATLFPK+ARLRNLTYSAPLYVDV+ +++KKGHD
Sbjct: 118  FAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMKKGHD 177

Query: 3281 CEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFVINGSEKVL 3102
            CEEVTET D+ KVFIGKVPIMLRSSYCTLYQ SEKDLTELGECPYDQGGYF+INGSEKVL
Sbjct: 178  CEEVTETSDYPKVFIGKVPIMLRSSYCTLYQQSEKDLTELGECPYDQGGYFIINGSEKVL 237

Query: 3101 IAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAESQNRPASSMFVRMLSRTSAKGGSSGQY 2922
            IAQEKMSTNHVYVFKKRQPNKF+YVAEVRSMAE+QNRPASSMFVRMLSR  AKGGSSGQY
Sbjct: 238  IAQEKMSTNHVYVFKKRQPNKFSYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQY 297

Query: 2921 IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 2742
            IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ
Sbjct: 298  IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 357

Query: 2741 VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 2562
            VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYIIHRLL+C
Sbjct: 358  VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMC 417

Query: 2561 ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 2382
            ALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGK+VNLQFAI
Sbjct: 418  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAI 477

Query: 2381 KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLA 2202
            KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLT+ASTLSHLRRLNSPIGREGKLA
Sbjct: 478  KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 537

Query: 2201 KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEI 2022
            KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEI
Sbjct: 538  KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEI 597

Query: 2021 SPAVIPQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTD 1842
            SPAVIPQA KIFVNGCWVGIHRNPDLLVKTLR+LRRQIDVNTEVGV+RDIRLKELRLYTD
Sbjct: 598  SPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTD 657

Query: 1841 YGRCSRPLFIVEKQRLLIKKKDIRALQQREAPEEGWHDLVAKGFXXXXXXXXXXXXXXXX 1662
            YGRCSRPLFIVE QRLLIKK  IRALQQRE P+EGWH+LV+KG+                
Sbjct: 658  YGRCSRPLFIVENQRLLIKKAHIRALQQRETPDEGWHELVSKGYIEYIDTEEEETTMISM 717

Query: 1661 XINDLVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 1482
             INDL+NAR NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 718  TINDLINARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 777

Query: 1481 GIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 1302
            GIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDS
Sbjct: 778  GIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDS 837

Query: 1301 VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGL 1122
            VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE+FGRPNRENTMGMRHGSYDKLDDDGL
Sbjct: 838  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGL 897

Query: 1121 APPGTRVSGEDVIIGKTTPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADG 942
            APPGTRVSGEDVIIGKT+PIPQDD+QGQASRY++RDHSTSLRHSESGMVDQVLLTTNADG
Sbjct: 898  APPGTRVSGEDVIIGKTSPIPQDDAQGQASRYSKRDHSTSLRHSESGMVDQVLLTTNADG 957

Query: 941  LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 762
            LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSR
Sbjct: 958  LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSR 1017

Query: 761  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 582
            MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+
Sbjct: 1018 MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRK 1077

Query: 581  LSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 402
            L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA
Sbjct: 1078 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1137

Query: 401  HGAAHFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 222
            HGAA FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK
Sbjct: 1138 HGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1197

Query: 221  LLFQELMAMAIAPRMLTKEVKPSKDQKKK 135
            LLFQELMAMAIAPRMLT ++K  KDQKK+
Sbjct: 1198 LLFQELMAMAIAPRMLTHDMKTGKDQKKR 1226


>gb|EOY28253.1| DNA-directed RNA polymerase family protein isoform 1 [Theobroma
            cacao]
          Length = 1189

 Score = 2224 bits (5763), Expect = 0.0
 Identities = 1101/1172 (93%), Positives = 1132/1172 (96%), Gaps = 1/1172 (0%)
 Frame = -2

Query: 3641 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPARHSD 3462
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP   SD
Sbjct: 20   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 79

Query: 3461 FVETIYKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKIIKKGHD 3282
            F ETIYKISFGQIYLS+PMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK++IKKGHD
Sbjct: 80   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 139

Query: 3281 CEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFVINGSEKVL 3102
             EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYF+INGSEKVL
Sbjct: 140  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 199

Query: 3101 IAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAESQNRPASSMFVRMLSRTSAKGGSSGQY 2922
            IAQEKMSTNHVYVFKKRQPNK+AYVAEVRSMAESQNRP S+MFVRMLSRTSAKGGSSGQY
Sbjct: 200  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 259

Query: 2921 IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 2742
            IRATLPYIR +IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ
Sbjct: 260  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 319

Query: 2741 VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 2562
            VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVG++CETKKAYYFGYIIHRLLLC
Sbjct: 320  VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGDFCETKKAYYFGYIIHRLLLC 379

Query: 2561 ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 2382
            ALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI
Sbjct: 380  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 439

Query: 2381 KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLA 2202
            KAKTITSGLKYSLATGNWGQAN AGTRAGVSQVLNRLT+ASTLSHLRRLNSPIGREGKLA
Sbjct: 440  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 499

Query: 2201 KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEI 2022
            KPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEI
Sbjct: 500  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 559

Query: 2021 SPAVIPQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTD 1842
            SPAVIPQATKIFVNGCWVG+HRNPD+LV TLR+LRR++DVNTEVGV+RDIRLKELR+YTD
Sbjct: 560  SPAVIPQATKIFVNGCWVGVHRNPDMLVTTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 619

Query: 1841 YGRCSRPLFIVEKQRLLIKKKDIRALQQREAPEE-GWHDLVAKGFXXXXXXXXXXXXXXX 1665
            YGRCSRPLFIVEKQRLLIKKKDI ALQQRE+PE+ GWHDLVAKGF               
Sbjct: 620  YGRCSRPLFIVEKQRLLIKKKDIHALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMIS 679

Query: 1664 XXINDLVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 1485
              INDLV AR NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 680  MTINDLVQARVNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 739

Query: 1484 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 1305
            MGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED
Sbjct: 740  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 799

Query: 1304 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDG 1125
            SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDG
Sbjct: 800  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDG 859

Query: 1124 LAPPGTRVSGEDVIIGKTTPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNAD 945
            LAPPGTRVSGEDVIIGKTTPI Q+++QGQASRY+RRDHS SLRHSE+G+VDQVLLTTNAD
Sbjct: 860  LAPPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQVLLTTNAD 919

Query: 944  GLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 765
            GLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS
Sbjct: 920  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 979

Query: 764  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 585
            RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGR
Sbjct: 980  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGR 1039

Query: 584  RLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 405
            RLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI
Sbjct: 1040 RLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1099

Query: 404  AHGAAHFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 225
            AHGAAHFLKERLFDQSDAYRVHVCE+CGLIAIANLKKNSFECRGCKNKTDIVQV+IPYAC
Sbjct: 1100 AHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYAC 1159

Query: 224  KLLFQELMAMAIAPRMLTKEVKPSKDQKKKGA 129
            KLLFQELMAMAIAPRMLTKE  P KDQKKKGA
Sbjct: 1160 KLLFQELMAMAIAPRMLTKE--PPKDQKKKGA 1189


>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1191

 Score = 2222 bits (5759), Expect = 0.0
 Identities = 1094/1172 (93%), Positives = 1134/1172 (96%), Gaps = 1/1172 (0%)
 Frame = -2

Query: 3641 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPARHSD 3462
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP   SD
Sbjct: 20   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 79

Query: 3461 FVETIYKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKIIKKGHD 3282
            F ETIYKISFGQIYLS+PMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK++IKKGHD
Sbjct: 80   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 139

Query: 3281 CEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFVINGSEKVL 3102
             EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYF+INGSEKVL
Sbjct: 140  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 199

Query: 3101 IAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAESQNRPASSMFVRMLSRTSAKGGSSGQY 2922
            IAQEKMSTNHVYVFKKRQPNK+AYVAEVRSMAESQNRP S+MFVRMLSRTSAKGGSSGQY
Sbjct: 200  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 259

Query: 2921 IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 2742
            IRATLPYIR +IPIIIVFRALGFVADKDILEHICYDF+DTQMMELLRPSLEEAFVIQNQQ
Sbjct: 260  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQ 319

Query: 2741 VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 2562
            VALDYIGKRGATVGVT+EKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC
Sbjct: 320  VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 379

Query: 2561 ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 2382
            ALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAI
Sbjct: 380  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAI 439

Query: 2381 KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLA 2202
            KAKTITSGLKYSLATGNWGQAN AGTRAGVSQVLNRLT+ASTLSHLRRLNSPIGREGKLA
Sbjct: 440  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 499

Query: 2201 KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEI 2022
            KPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEI
Sbjct: 500  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 559

Query: 2021 SPAVIPQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTD 1842
            SPAVIPQATKIFVNGCWVGIHR+PD+LV+TLR+LRR++DVNTEVGV+RDIRLKELR+YTD
Sbjct: 560  SPAVIPQATKIFVNGCWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 619

Query: 1841 YGRCSRPLFIVEKQRLLIKKKDIRALQQREAPEE-GWHDLVAKGFXXXXXXXXXXXXXXX 1665
            YGRCSRPLFIVEKQRLLIK+KDI+ALQQRE PE+ GWHDLVAKGF               
Sbjct: 620  YGRCSRPLFIVEKQRLLIKRKDIQALQQRETPEDGGWHDLVAKGFIEYIDTEEEETTMIS 679

Query: 1664 XXINDLVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 1485
              INDLV+AR NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 680  MTINDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 739

Query: 1484 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 1305
            MGIYVTNYQ RMDT+AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED
Sbjct: 740  MGIYVTNYQFRMDTVAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 799

Query: 1304 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDG 1125
            SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDG
Sbjct: 800  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDG 859

Query: 1124 LAPPGTRVSGEDVIIGKTTPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNAD 945
            LAPPGTRVSGEDV+IGKTTPI QD++QG A+RYTRRDHSTSLRHSE+GMVDQVLLTTNAD
Sbjct: 860  LAPPGTRVSGEDVVIGKTTPIAQDEAQGPAARYTRRDHSTSLRHSETGMVDQVLLTTNAD 919

Query: 944  GLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 765
            GLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPS
Sbjct: 920  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDIIVNPHAIPS 979

Query: 764  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 585
            RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR
Sbjct: 980  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1039

Query: 584  RLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 405
            RL++MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI
Sbjct: 1040 RLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1099

Query: 404  AHGAAHFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 225
            AHGAAHFLKERLFDQSDAYR+HVCE+CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC
Sbjct: 1100 AHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1159

Query: 224  KLLFQELMAMAIAPRMLTKEVKPSKDQKKKGA 129
            KLLFQELM+MAIAPRMLTK+VK +KD+KKK A
Sbjct: 1160 KLLFQELMSMAIAPRMLTKDVKQAKDKKKKQA 1191


>gb|ESW20162.1| hypothetical protein PHAVU_006G185800g [Phaseolus vulgaris]
          Length = 1194

 Score = 2219 bits (5750), Expect = 0.0
 Identities = 1095/1172 (93%), Positives = 1132/1172 (96%), Gaps = 1/1172 (0%)
 Frame = -2

Query: 3641 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPARHSD 3462
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP   SD
Sbjct: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 82

Query: 3461 FVETIYKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKIIKKGHD 3282
            F ETIY+ISFGQIYLS+PMMTESDGETATLFPKAARLRNLTYSAPLYVDV+K++IKKGHD
Sbjct: 83   FAETIYRISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHD 142

Query: 3281 CEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFVINGSEKVL 3102
             EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYF+INGSEKVL
Sbjct: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202

Query: 3101 IAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAESQNRPASSMFVRMLSRTSAKGGSSGQY 2922
            IAQEKMSTNHVYVFKKRQPNK+AYVAEVRSMAESQNRP S+MFVRMLSRTS+KGGSSGQY
Sbjct: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQY 262

Query: 2921 IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 2742
            IRATLPYIR +IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ
Sbjct: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 322

Query: 2741 VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 2562
            VALDYIGKRGATVGVT+EKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC
Sbjct: 323  VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 382

Query: 2561 ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 2382
            ALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAI
Sbjct: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAI 442

Query: 2381 KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLA 2202
            KAKTITSGLKYSLATGNWGQAN AGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLA
Sbjct: 443  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLA 502

Query: 2201 KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEI 2022
            KPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEI
Sbjct: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562

Query: 2021 SPAVIPQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTD 1842
            SPAVIPQATKIFVNG W+GIHR+PD+LV+TLR+LRR++DVNTEVGV+RDIRLKELR+YTD
Sbjct: 563  SPAVIPQATKIFVNGSWMGIHRDPDMLVRTLRKLRRRVDVNTEVGVVRDIRLKELRIYTD 622

Query: 1841 YGRCSRPLFIVEKQRLLIKKKDIRALQQREAPEE-GWHDLVAKGFXXXXXXXXXXXXXXX 1665
            YGRCSRPLFIV+KQRLLIKK+DI ALQQRE+PEE GWHDLV+KGF               
Sbjct: 623  YGRCSRPLFIVDKQRLLIKKRDIHALQQRESPEEGGWHDLVSKGFIEYIDTEEEETTMIS 682

Query: 1664 XXINDLVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 1485
              INDLV AR NPE+AYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 683  MTINDLVQARLNPEDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 742

Query: 1484 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 1305
            MGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED
Sbjct: 743  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 802

Query: 1304 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDG 1125
            SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDG
Sbjct: 803  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNTMGMRHGSYDKLDDDG 862

Query: 1124 LAPPGTRVSGEDVIIGKTTPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNAD 945
            LAPPGTRVSGEDVIIGKTTPI Q+++QGQA RYTRRDHS SLRHSE+GMVDQVLLTTNAD
Sbjct: 863  LAPPGTRVSGEDVIIGKTTPISQEEAQGQALRYTRRDHSISLRHSETGMVDQVLLTTNAD 922

Query: 944  GLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 765
            GLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS
Sbjct: 923  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982

Query: 764  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 585
            RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR
Sbjct: 983  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1042

Query: 584  RLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 405
            RLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI
Sbjct: 1043 RLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1102

Query: 404  AHGAAHFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 225
            AHGAAHFLKERLFDQSDAYRVHVCE+CGLIAIANLKKNSFECRGCKNKTDIVQV+IPYAC
Sbjct: 1103 AHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYAC 1162

Query: 224  KLLFQELMAMAIAPRMLTKEVKPSKDQKKKGA 129
            KLLFQELMAMAIAPRMLTKE+K +KDQKKKGA
Sbjct: 1163 KLLFQELMAMAIAPRMLTKEIKSAKDQKKKGA 1194


>ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Citrus
            sinensis]
          Length = 1195

 Score = 2217 bits (5745), Expect = 0.0
 Identities = 1097/1173 (93%), Positives = 1131/1173 (96%), Gaps = 2/1173 (0%)
 Frame = -2

Query: 3641 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPARHSD 3462
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP + SD
Sbjct: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82

Query: 3461 FVETIYKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKIIKKGHD 3282
            F ETIYKISFGQIYLS+PMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK++IKKGHD
Sbjct: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142

Query: 3281 CEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFVINGSEKVL 3102
             EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYF+INGSEKVL
Sbjct: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202

Query: 3101 IAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAESQNRPASSMFVRMLSRTSAKGGSSGQY 2922
            IAQEKMSTNHVYVFKKRQPNK+AYVAEVRSMAESQNRP S+MFVRMLSRTSAKGGSSGQY
Sbjct: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 262

Query: 2921 IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 2742
            IRATLPYIR +IPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQ
Sbjct: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQ 322

Query: 2741 VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 2562
            VALDYIGKRGATVGVTR+KRIKYAKEILQKEMLPHVG G++CETKKAYYFGYIIHRLLLC
Sbjct: 323  VALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382

Query: 2561 ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 2382
            ALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGKDVNLQFAI
Sbjct: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 442

Query: 2381 KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLA 2202
            KAKTITSGLKYSLATGNWGQAN AGTRAGVSQVLNRLT+ASTLSHLRRLNSPIGREGKLA
Sbjct: 443  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502

Query: 2201 KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEI 2022
            KPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEI
Sbjct: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562

Query: 2021 SPAVIPQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTD 1842
            SPAVIPQATKIFVNGCWVGIHR+P++LVKTLR+LRR++DVNTEVGV+RDIRLKELR+YTD
Sbjct: 563  SPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 622

Query: 1841 YGRCSRPLFIVEKQRLLIKKKDIRALQQREAPEE-GWHDLVAKGFXXXXXXXXXXXXXXX 1665
            YGRCSRPLFIVEKQRLLIKK+DI ALQQRE+PE+ GWHDLVAKGF               
Sbjct: 623  YGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMIS 682

Query: 1664 XXINDLVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 1485
              INDLV AR +PEEAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 683  MTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 742

Query: 1484 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 1305
            MGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED
Sbjct: 743  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 802

Query: 1304 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDG 1125
            SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDG
Sbjct: 803  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 862

Query: 1124 LAPPGTRVSGEDVIIGKTTPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNAD 945
            LAPPGTRVSGEDVIIGKTTPI QD++QGQASRYTRRDHS SLRHSE+GMVDQVLLTTNAD
Sbjct: 863  LAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNAD 922

Query: 944  GLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 765
            GLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS
Sbjct: 923  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982

Query: 764  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 585
            RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR
Sbjct: 983  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1042

Query: 584  RLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 405
            RL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI
Sbjct: 1043 RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1102

Query: 404  AHGAAHFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 225
            AHGAAHFLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC
Sbjct: 1103 AHGAAHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1162

Query: 224  KLLFQELMAMAIAPRMLTKE-VKPSKDQKKKGA 129
            KLLFQELMAMAIAPRMLTKE  K SKD KKKGA
Sbjct: 1163 KLLFQELMAMAIAPRMLTKEDTKQSKDHKKKGA 1195


>ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citrus clementina]
            gi|557525528|gb|ESR36834.1| hypothetical protein
            CICLE_v10027701mg [Citrus clementina]
          Length = 1195

 Score = 2216 bits (5742), Expect = 0.0
 Identities = 1096/1173 (93%), Positives = 1131/1173 (96%), Gaps = 2/1173 (0%)
 Frame = -2

Query: 3641 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPARHSD 3462
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP + SD
Sbjct: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82

Query: 3461 FVETIYKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKIIKKGHD 3282
            F ETIYKISFGQIYLS+PMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK++IKKGHD
Sbjct: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142

Query: 3281 CEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFVINGSEKVL 3102
             EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYF+INGSEKVL
Sbjct: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202

Query: 3101 IAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAESQNRPASSMFVRMLSRTSAKGGSSGQY 2922
            IAQEKMSTNHVYVFKKRQPNK+AYVAEVRSMAESQNRP S+MFVRMLSRTSAKGGSSGQY
Sbjct: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 262

Query: 2921 IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 2742
            IRATLPYIR +IPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQ
Sbjct: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQ 322

Query: 2741 VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 2562
            VALDYIGKRGATVGVTR+KRIKYAKEILQKEMLPHVG G++CETKKAYYFGYIIHRLLLC
Sbjct: 323  VALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382

Query: 2561 ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 2382
            ALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGKDVNLQFAI
Sbjct: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 442

Query: 2381 KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLA 2202
            KAKTITSGLKYSLATGNWGQAN AGTRAGVSQVLNRLT+ASTLSHLRRLNSPIGREGKLA
Sbjct: 443  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502

Query: 2201 KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEI 2022
            KPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEI
Sbjct: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562

Query: 2021 SPAVIPQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTD 1842
            SPAVIPQATKIFVNGCWVGIHR+P++LVKTLR+LRR++DVNTEVGV+RDIRLKELR+YTD
Sbjct: 563  SPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 622

Query: 1841 YGRCSRPLFIVEKQRLLIKKKDIRALQQREAPEE-GWHDLVAKGFXXXXXXXXXXXXXXX 1665
            YGRCSRPLFIVEKQRLLIKK+DI ALQQRE+PE+ GWHDLVAKGF               
Sbjct: 623  YGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMIS 682

Query: 1664 XXINDLVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 1485
              INDLV AR +PEEAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 683  MTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 742

Query: 1484 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 1305
            MGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED
Sbjct: 743  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 802

Query: 1304 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDG 1125
            SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDG
Sbjct: 803  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 862

Query: 1124 LAPPGTRVSGEDVIIGKTTPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNAD 945
            LAPPGTRVSGEDVIIGKTTPI QD++QGQASRYTRRDHS SLRHSE+GMVDQVLLTTNAD
Sbjct: 863  LAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNAD 922

Query: 944  GLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 765
            GLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS
Sbjct: 923  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982

Query: 764  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 585
            RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR
Sbjct: 983  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1042

Query: 584  RLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 405
            RL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI
Sbjct: 1043 RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1102

Query: 404  AHGAAHFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 225
            AHGA+HFLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC
Sbjct: 1103 AHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1162

Query: 224  KLLFQELMAMAIAPRMLTKE-VKPSKDQKKKGA 129
            KLLFQELMAMAIAPRMLTKE  K SKD KKKGA
Sbjct: 1163 KLLFQELMAMAIAPRMLTKEDTKQSKDHKKKGA 1195


>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
            gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
            Full=DNA-directed RNA polymerase II subunit RPB2;
            Short=RNA polymerase II subunit 2; Short=RNA polymerase
            II subunit B2; AltName: Full=DNA-directed RNA polymerase
            II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
            polymerase II subunit 2 [Solanum lycopersicum]
          Length = 1191

 Score = 2216 bits (5741), Expect = 0.0
 Identities = 1093/1172 (93%), Positives = 1132/1172 (96%), Gaps = 1/1172 (0%)
 Frame = -2

Query: 3641 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPARHSD 3462
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP   SD
Sbjct: 20   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 79

Query: 3461 FVETIYKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKIIKKGHD 3282
            F ETIYKI+FGQIYLS+PMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK++IKKGHD
Sbjct: 80   FAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 139

Query: 3281 CEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFVINGSEKVL 3102
             EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGGYF+INGSEKVL
Sbjct: 140  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVL 199

Query: 3101 IAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAESQNRPASSMFVRMLSRTSAKGGSSGQY 2922
            IAQEKMSTNHVYVFKKRQPNK+A+VAEVRSMA++QNRP S+MFVRMLSRTSAKGGSSGQY
Sbjct: 200  IAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPPSTMFVRMLSRTSAKGGSSGQY 259

Query: 2921 IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 2742
            IRATLPYIR +IPIIIVFRALGFVADKDILEHICYDF+DTQMMELLRPSLEEAFVIQNQQ
Sbjct: 260  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQNQQ 319

Query: 2741 VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 2562
            VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC
Sbjct: 320  VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 379

Query: 2561 ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 2382
            ALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAI
Sbjct: 380  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAI 439

Query: 2381 KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLA 2202
            KAKTITSGLKYSLATGNWGQAN AGTRAGVSQVLNRLT+ASTLSHLRRLNSPIGREGKLA
Sbjct: 440  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 499

Query: 2201 KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEI 2022
            KPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEI
Sbjct: 500  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 559

Query: 2021 SPAVIPQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTD 1842
            SPAVIPQATKIFVNG WVGIHR+PD+LV+TLR+LRR++DVNTEVGV+RDIRLKELR+YTD
Sbjct: 560  SPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 619

Query: 1841 YGRCSRPLFIVEKQRLLIKKKDIRALQQREAPEE-GWHDLVAKGFXXXXXXXXXXXXXXX 1665
            YGRCSRPLFIVEKQRL+IKKKDI+ LQQRE+P+E GWHDLVAKG+               
Sbjct: 620  YGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGYIEYIDTEEEETTMIS 679

Query: 1664 XXINDLVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 1485
              INDLV AR NP +AYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 680  MTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 739

Query: 1484 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 1305
            MGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQED
Sbjct: 740  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQED 799

Query: 1304 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDG 1125
            SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R +TMGMRHGSYDKLDDDG
Sbjct: 800  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDG 859

Query: 1124 LAPPGTRVSGEDVIIGKTTPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNAD 945
            LAPPGTRVSGEDVIIGKTTPI QDD+QGQASRYTR+DHSTSLRHSE+GMVDQVLLTTNAD
Sbjct: 860  LAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNAD 919

Query: 944  GLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 765
            GLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS
Sbjct: 920  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 979

Query: 764  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 585
            RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR
Sbjct: 980  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1039

Query: 584  RLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 405
            RLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI
Sbjct: 1040 RLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1099

Query: 404  AHGAAHFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 225
            AHGAAHFLKERLFDQSDAYRVHVCE+CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC
Sbjct: 1100 AHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1159

Query: 224  KLLFQELMAMAIAPRMLTKEVKPSKDQKKKGA 129
            KLLFQELMAMAIAPRMLTK+VK +KDQKKKGA
Sbjct: 1160 KLLFQELMAMAIAPRMLTKDVKLAKDQKKKGA 1191


>ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Solanum
            tuberosum]
          Length = 1191

 Score = 2214 bits (5736), Expect = 0.0
 Identities = 1093/1172 (93%), Positives = 1130/1172 (96%), Gaps = 1/1172 (0%)
 Frame = -2

Query: 3641 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPARHSD 3462
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP   SD
Sbjct: 20   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 79

Query: 3461 FVETIYKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKIIKKGHD 3282
            F ETIYKI+FGQIYLS+PMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK++IKKGHD
Sbjct: 80   FAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 139

Query: 3281 CEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFVINGSEKVL 3102
             EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGGYF+INGSEKVL
Sbjct: 140  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVL 199

Query: 3101 IAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAESQNRPASSMFVRMLSRTSAKGGSSGQY 2922
            IAQEKMSTNHVYVFKKRQPNK+A+VAEVRSMAESQNRP S+MFVRMLSRTSAKGGSSGQY
Sbjct: 200  IAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 259

Query: 2921 IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 2742
            IRATLPYIR +IPIIIVFRALGFVADKDILEHICYDF+DTQMMELLRPSLEEAFVIQNQQ
Sbjct: 260  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQNQQ 319

Query: 2741 VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 2562
            VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC
Sbjct: 320  VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 379

Query: 2561 ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 2382
            ALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAI
Sbjct: 380  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAI 439

Query: 2381 KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLA 2202
            KAKTITSGLKYSLATGNWGQAN AGTRAGVSQVLNRLT+ASTLSHLRRLNSPIGREGKLA
Sbjct: 440  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 499

Query: 2201 KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEI 2022
            KPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEI
Sbjct: 500  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 559

Query: 2021 SPAVIPQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTD 1842
            SPAVIPQATKIFVNG WVGIHR+PD+LV+TLR+LRR++DVNTEVGV+RDIRLKELR+YTD
Sbjct: 560  SPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 619

Query: 1841 YGRCSRPLFIVEKQRLLIKKKDIRALQQREAPEE-GWHDLVAKGFXXXXXXXXXXXXXXX 1665
            YGRCSRPLFIVEKQRL+IKKKDI+ LQQRE+P+E GWHDLVAKG+               
Sbjct: 620  YGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGYIEYIDTEEEETTMIS 679

Query: 1664 XXINDLVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 1485
              INDLV AR NP +AYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 680  MTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 739

Query: 1484 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 1305
            MGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQED
Sbjct: 740  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQED 799

Query: 1304 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDG 1125
            SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R  TMGMRHGSYDKLDDDG
Sbjct: 800  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRATTMGMRHGSYDKLDDDG 859

Query: 1124 LAPPGTRVSGEDVIIGKTTPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNAD 945
            LAPPGTRVSGEDVIIGKTTPI QDD+QGQASRYTR+DHSTSLRHSE+GMVDQVLLTTNAD
Sbjct: 860  LAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNAD 919

Query: 944  GLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 765
            GLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDIIVNPHAIPS
Sbjct: 920  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPS 979

Query: 764  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 585
            RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR
Sbjct: 980  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1039

Query: 584  RLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 405
            RLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI
Sbjct: 1040 RLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1099

Query: 404  AHGAAHFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 225
            AHGAAHFLKERLFDQSDAYRVHVCE+CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC
Sbjct: 1100 AHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1159

Query: 224  KLLFQELMAMAIAPRMLTKEVKPSKDQKKKGA 129
            KLLFQELMAMAIAPRMLTK+VK +KDQKKK A
Sbjct: 1160 KLLFQELMAMAIAPRMLTKDVKLAKDQKKKAA 1191


>ref|XP_004499217.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cicer
            arietinum]
          Length = 1194

 Score = 2212 bits (5731), Expect = 0.0
 Identities = 1088/1172 (92%), Positives = 1132/1172 (96%), Gaps = 1/1172 (0%)
 Frame = -2

Query: 3641 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPARHSD 3462
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP   SD
Sbjct: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 82

Query: 3461 FVETIYKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKIIKKGHD 3282
            F ETIYKISFGQIYLS+PMMTESDGET+TLFPKAARLRNLTYSAPLYVDV+K++IKKGHD
Sbjct: 83   FAETIYKISFGQIYLSKPMMTESDGETSTLFPKAARLRNLTYSAPLYVDVSKRVIKKGHD 142

Query: 3281 CEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFVINGSEKVL 3102
             EEVTETQDFTKVFIGKVPIMLRSSYCTL+QNSEKDLTELGECPYDQGGYF+INGSEKVL
Sbjct: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVL 202

Query: 3101 IAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAESQNRPASSMFVRMLSRTSAKGGSSGQY 2922
            IAQEKMSTNHVYVFKKRQPNK+AYVAEVRSMAESQNRP S+MFVRMLSRTS+KGGSSGQY
Sbjct: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQY 262

Query: 2921 IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 2742
            IRATLPYIR +IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ
Sbjct: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 322

Query: 2741 VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 2562
            VALDYIGKRGATVGVT+EKRIKYAK+ILQ+EMLPHVGVGEYCETKKAYYFGYIIHRLLLC
Sbjct: 323  VALDYIGKRGATVGVTKEKRIKYAKDILQREMLPHVGVGEYCETKKAYYFGYIIHRLLLC 382

Query: 2561 ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 2382
            ALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAI
Sbjct: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAI 442

Query: 2381 KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLA 2202
            KAKTITSGLKYSLATGNWGQAN AGTRAGVSQVLNRLT+ASTLSHLRRLNSPIGREGKLA
Sbjct: 443  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502

Query: 2201 KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEI 2022
            KPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEI
Sbjct: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562

Query: 2021 SPAVIPQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTD 1842
            SPAVIPQATKIFVNGCW+GIHR+PD+LV+TLR+LRR++DVNTEVGV+RDIRLKELR+YTD
Sbjct: 563  SPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRVDVNTEVGVVRDIRLKELRIYTD 622

Query: 1841 YGRCSRPLFIVEKQRLLIKKKDIRALQQREAPEE-GWHDLVAKGFXXXXXXXXXXXXXXX 1665
            YGRCSRPLFIV+KQRLLIKKKDI +LQQRE+PEE GWHDLV+KGF               
Sbjct: 623  YGRCSRPLFIVDKQRLLIKKKDIHSLQQRESPEEGGWHDLVSKGFIEYIDTEEEETTMIS 682

Query: 1664 XXINDLVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 1485
              INDLV AR NPEEAYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 683  MTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 742

Query: 1484 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 1305
            MGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQED
Sbjct: 743  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQED 802

Query: 1304 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDG 1125
            SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDG
Sbjct: 803  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDG 862

Query: 1124 LAPPGTRVSGEDVIIGKTTPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNAD 945
            LAPPGTRVSGEDVIIGKTTP+ Q+++QGQA+RY++RDHS SLRHSE+G+VDQVLLTTNAD
Sbjct: 863  LAPPGTRVSGEDVIIGKTTPLSQEEAQGQAARYSKRDHSISLRHSETGIVDQVLLTTNAD 922

Query: 944  GLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 765
            GLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS
Sbjct: 923  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982

Query: 764  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 585
            RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR
Sbjct: 983  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1042

Query: 584  RLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 405
            RLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI
Sbjct: 1043 RLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1102

Query: 404  AHGAAHFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 225
            AHGAAHFLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRGCKNKTDIVQV+IPYAC
Sbjct: 1103 AHGAAHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYAC 1162

Query: 224  KLLFQELMAMAIAPRMLTKEVKPSKDQKKKGA 129
            KLLFQELMAMAIAPRMLTKE+K  KDQKKKGA
Sbjct: 1163 KLLFQELMAMAIAPRMLTKEIKSIKDQKKKGA 1194


>gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia x hybrida]
          Length = 1195

 Score = 2209 bits (5724), Expect = 0.0
 Identities = 1090/1172 (93%), Positives = 1130/1172 (96%), Gaps = 1/1172 (0%)
 Frame = -2

Query: 3641 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPARHSD 3462
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP   SD
Sbjct: 24   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 83

Query: 3461 FVETIYKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKIIKKGHD 3282
            F ETIYKI+FGQIYLS+PMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK++IKKGHD
Sbjct: 84   FAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 143

Query: 3281 CEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFVINGSEKVL 3102
             EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGGYF+INGSEKVL
Sbjct: 144  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVL 203

Query: 3101 IAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAESQNRPASSMFVRMLSRTSAKGGSSGQY 2922
            IAQEKMSTNHVYVFKKRQPNK+A+VAEVRSMAESQNRP S+MFVRMLSRTSAKGGSSGQY
Sbjct: 204  IAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 263

Query: 2921 IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 2742
            IRATLPYIR +IPIIIVFRALGFVADKDILEHICYDF+DTQMMELLRPSLEEAFVIQNQQ
Sbjct: 264  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQNQQ 323

Query: 2741 VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 2562
            VALDYIGKRGATVGVT+EKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC
Sbjct: 324  VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 383

Query: 2561 ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 2382
            ALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI
Sbjct: 384  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 443

Query: 2381 KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLA 2202
            KAKTITSGLKYSLATGNWGQAN AGTRAGVSQVLNRLT+ASTLSHLRRLNSPIGREGKLA
Sbjct: 444  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 503

Query: 2201 KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEI 2022
            KPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEE  TENFEEI
Sbjct: 504  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEXGTENFEEI 563

Query: 2021 SPAVIPQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTD 1842
            SPAVIPQATKIFV+G W+GIHR+PD+LV+TLR+LRR++DVNTEVGV+RDIRLKELR+YTD
Sbjct: 564  SPAVIPQATKIFVBGTWMGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 623

Query: 1841 YGRCSRPLFIVEKQRLLIKKKDIRALQQREAPEE-GWHDLVAKGFXXXXXXXXXXXXXXX 1665
            YGRCSRPLFIVEKQ+LLIKKKDI+ LQQRE PEE GWHDLVAKG+               
Sbjct: 624  YGRCSRPLFIVEKQKLLIKKKDIQQLQQRETPEEGGWHDLVAKGYIEYIDTEEEETTMIS 683

Query: 1664 XXINDLVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 1485
              INDLV A  NPE+AYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 684  MTINDLVQASINPEDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 743

Query: 1484 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 1305
            MGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQED
Sbjct: 744  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQED 803

Query: 1304 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDG 1125
            SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R +TMGMRHGSYDKLDDDG
Sbjct: 804  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDG 863

Query: 1124 LAPPGTRVSGEDVIIGKTTPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNAD 945
            LAPPGTRVSGEDVIIGKTTPI QDD+QGQASRYTR+DHSTSLRHSE+GMVDQVLLTTNAD
Sbjct: 864  LAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNAD 923

Query: 944  GLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 765
            GLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPS
Sbjct: 924  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPS 983

Query: 764  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 585
            RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR
Sbjct: 984  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1043

Query: 584  RLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 405
            RL AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI
Sbjct: 1044 RLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1103

Query: 404  AHGAAHFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 225
            AHGAAHFLKERLFDQSDAYRVHVCE+CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC
Sbjct: 1104 AHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1163

Query: 224  KLLFQELMAMAIAPRMLTKEVKPSKDQKKKGA 129
            KLLFQELMAMAIAPRMLTK+VK ++DQKKKGA
Sbjct: 1164 KLLFQELMAMAIAPRMLTKDVKQARDQKKKGA 1195


>ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
            sativus] gi|449479313|ref|XP_004155566.1| PREDICTED:
            DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
            sativus]
          Length = 1199

 Score = 2209 bits (5723), Expect = 0.0
 Identities = 1089/1172 (92%), Positives = 1130/1172 (96%), Gaps = 1/1172 (0%)
 Frame = -2

Query: 3641 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPARHSD 3462
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP   SD
Sbjct: 28   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 87

Query: 3461 FVETIYKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKIIKKGHD 3282
              ETIYKISFGQIYLS+PMMTESDGETATLFPKAARLRNLTYSAPLYVDV+K++IKKGHD
Sbjct: 88   VAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHD 147

Query: 3281 CEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFVINGSEKVL 3102
             EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYF+INGSEKVL
Sbjct: 148  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 207

Query: 3101 IAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAESQNRPASSMFVRMLSRTSAKGGSSGQY 2922
            IAQEKMSTNHVYVFKKRQPNK+A+VAEVRSMAESQNRP S+MFVRMLSRTSAKGGSSGQY
Sbjct: 208  IAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 267

Query: 2921 IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 2742
            IRATLPYIR +IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ
Sbjct: 268  IRATLPYIRNEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 327

Query: 2741 VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 2562
            VALDYIGKRG+TVGVT+EKRIKYAKEILQKEMLPHVGVGE+CETKKAYYFGYIIHRLLLC
Sbjct: 328  VALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLC 387

Query: 2561 ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 2382
            ALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAI
Sbjct: 388  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAI 447

Query: 2381 KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLA 2202
            KAKTITSGLKYSLATGNWGQAN AGTRAGVSQVLNRLT+ASTLSHLRRLNSPIGREGKLA
Sbjct: 448  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 507

Query: 2201 KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEI 2022
            KPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEI
Sbjct: 508  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 567

Query: 2021 SPAVIPQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTD 1842
            SPAVIPQATKIFVNGCWVGIHR+P++LVKTLR+LRR++DVNTEVGV+RDIRLKELR+YTD
Sbjct: 568  SPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 627

Query: 1841 YGRCSRPLFIVEKQRLLIKKKDIRALQQREAPEE-GWHDLVAKGFXXXXXXXXXXXXXXX 1665
            YGRCSRPLFIVEKQRLLIKKKDI ALQQRE+PE+ GWHDLVAKGF               
Sbjct: 628  YGRCSRPLFIVEKQRLLIKKKDIHALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMIS 687

Query: 1664 XXINDLVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 1485
              I+DL+ AR NP EAYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 688  MTISDLIQARINPVEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 747

Query: 1484 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 1305
            MGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED
Sbjct: 748  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 807

Query: 1304 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDG 1125
            SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDG
Sbjct: 808  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 867

Query: 1124 LAPPGTRVSGEDVIIGKTTPIPQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNAD 945
            LAPPGTRVSGEDVIIGKTTPI Q+++QGQA+RY+RRDHS SLRHSE+G+VDQVLLTTNAD
Sbjct: 868  LAPPGTRVSGEDVIIGKTTPISQEEAQGQAARYSRRDHSISLRHSENGIVDQVLLTTNAD 927

Query: 944  GLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 765
            GLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS
Sbjct: 928  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 987

Query: 764  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 585
            RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR
Sbjct: 988  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1047

Query: 584  RLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 405
            RLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI
Sbjct: 1048 RLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1107

Query: 404  AHGAAHFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 225
            AHGAAHFLKERLFDQSDAYR+HVCE CGLIAIANLKK+SFECRGCKNKTDIVQV+IPYAC
Sbjct: 1108 AHGAAHFLKERLFDQSDAYRIHVCECCGLIAIANLKKSSFECRGCKNKTDIVQVYIPYAC 1167

Query: 224  KLLFQELMAMAIAPRMLTKEVKPSKDQKKKGA 129
            KLLFQELMAMAIAPRM TKE+KP KDQKKKG+
Sbjct: 1168 KLLFQELMAMAIAPRMFTKEIKPLKDQKKKGS 1199