BLASTX nr result
ID: Stemona21_contig00012199
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Stemona21_contig00012199
(1302 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 49 2e-09
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 48 3e-07
gb|ABW81094.1| RT6non-ltr [Cleome spinosa] 43 1e-06
emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga... 56 2e-06
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 42 1e-05
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 48.5 bits (114), Expect(2) = 2e-09
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = -3
Query: 487 KALHIL-FWGVASKNPSIWVEAMNRKYLKENSVWQAEVH*SASQIWKDVLSEREVANLAV 311
KAL I W + S + + W + + LK NS W A + S W+ +L RE+
Sbjct: 706 KALMISHIWNLVSSSSNFWTDWVKVYLLKGNSFWNAPLPSICSWNWRKLLKIRELCCSFF 765
Query: 310 INVIGSSQSINFWIDTW 260
+N+IG ++ + W D W
Sbjct: 766 VNIIGDGRATSLWFDNW 782
Score = 41.6 bits (96), Expect(2) = 2e-09
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Frame = -2
Query: 845 HLSIVELPIIHLGVP---GKVRLNAYKPLVEKFRSKIFSWKNQ-FSFFGREVGIGEVC*K 678
+ S+ P+ +LG+P K+R+ PL+++ ++I SW+N+ SF GR I V
Sbjct: 583 NFSLGTCPVRYLGIPLITSKLRMQDCSPLLDRIETRIKSWENKVLSFAGRLQLIQSVLSS 642
Query: 677 LITCTG*L*I---KFL*G*SKRLKIFFKFPMAWHRS*EEIYWIKWSDICRPKKEGG 519
+ I K L KRL+ F A + S + WS+IC PK EGG
Sbjct: 643 IQVYWASHLILPKKVLKDIEKRLRCFL---WAGNCSGRAATKVAWSEICLPKCEGG 695
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 48.1 bits (113), Expect(2) = 3e-07
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = -3
Query: 472 LFWGVASKNPSIWVEAMNRKYLKENSVWQAEVH*S-ASQIWKDVLSEREVANLAVINVIG 296
L W + S S+WV+ LK+ S W H + S IW+ +L REVA +
Sbjct: 611 LIWRLLSCQDSLWVKWTRMNLLKKESFWSIGTHSTLGSWIWRRLLKHREVAKSFCKIEVN 670
Query: 295 SSQSINFWIDTWLLKRGSLLN 233
+ + +FW D W ++G L+N
Sbjct: 671 NGVNTSFWFDNW-SEKGPLIN 690
Score = 34.7 bits (78), Expect(2) = 3e-07
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 19/123 (15%)
Frame = -2
Query: 830 ELPIIHLGVP---GKVRLNAYKPLVEKFRSKIFSWKNQF-SFFGREVGIGEVC*KLITCT 663
+LP+ +LG+P ++ + Y PL+++ R +I W +++ SF GR I V +
Sbjct: 487 KLPVRYLGLPLVTKRLTTSDYSPLIDQIRRRIGMWTSRYLSFAGRLSLINSVLWSI---- 542
Query: 662 G*L*IKFL*G*SKRLKIFFKFPMAW----HRS*EEIYW-----------IKWSDICRPKK 528
+ F+ P +R + W + W +IC+PKK
Sbjct: 543 -----------TNFWMNAFRLPRECINEINRISSALLWSGPELNPKKAKVSWDEICKPKK 591
Query: 527 EGG 519
EGG
Sbjct: 592 EGG 594
>gb|ABW81094.1| RT6non-ltr [Cleome spinosa]
Length = 459
Score = 43.1 bits (100), Expect(2) = 1e-06
Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 6/136 (4%)
Frame = -2
Query: 908 NREKCSLVFGCRV---KE*VKASLHLSIVELPIIHLGVPGKV-RLNA--YKPLVEKFRSK 747
N KC + G K+ + + + +++ P+ +LG+P RL Y+PL+EK R+K
Sbjct: 101 NTGKCEMFLGGLTDSEKQELSSCMGITLGNFPMKYLGLPVNTHRLTKADYEPLLEKIRAK 160
Query: 746 IFSWKNQFSFFGREVGIGEVC*KLITCTG*L*IKFL*G*SKRLKIFFKFPMAWHRS*EEI 567
+ +W ++ + ++ + V + + +W ++
Sbjct: 161 VSNWSSKLLSYAGKIQLVSV------------------------VIYGMVSSWSQTSTGT 196
Query: 566 YWIKWSDICRPKKEGG 519
+ W+ ICRP+KEGG
Sbjct: 197 ARVAWNIICRPRKEGG 212
Score = 37.4 bits (85), Expect(2) = 1e-06
Identities = 23/82 (28%), Positives = 36/82 (43%)
Frame = -3
Query: 472 LFWGVASKNPSIWVEAMNRKYLKENSVWQAEVH*SASQIWKDVLSEREVANLAVINVIGS 293
+ W V S+WV + R LK S W S + +L+ +++A + IG+
Sbjct: 229 MVWRVFKYASSLWVAWLKRNVLKRGSFWDTVPTARHSWNVRKLLNMKDLAGKFIRCRIGN 288
Query: 292 SQSINFWIDTWLLKRGSLLNQI 227
+FW D W G LL+ I
Sbjct: 289 GNMASFWFDNW-TDLGPLLDYI 309
>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1389
Score = 55.8 bits (133), Expect(2) = 2e-06
Identities = 24/74 (32%), Positives = 42/74 (56%)
Frame = -3
Query: 472 LFWGVASKNPSIWVEAMNRKYLKENSVWQAEVH*SASQIWKDVLSEREVANLAVINVIGS 293
L W + +IWV+ + +KYLKE ++ ++ +AS WK++L R + + +IG
Sbjct: 885 LLWKIMVSKDNIWVKLVTQKYLKEQNLLVCKIPSNASWQWKNLLRHRNFFSKGLRWLIGD 944
Query: 292 SQSINFWIDTWLLK 251
Q I+FW D W+ +
Sbjct: 945 GQDISFWTDNWIFQ 958
Score = 23.9 bits (50), Expect(2) = 2e-06
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 563 WIKWSDICRPKKEGG 519
+I W+ IC+PK GG
Sbjct: 854 FIGWNKICQPKSVGG 868
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 42.0 bits (97), Expect(2) = 1e-05
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = -3
Query: 472 LFWGVASKNPSIWVEAMNRKYLKENSVWQAEVH*S-ASQIWKDVLSEREVANLAVINVIG 296
L W + S PS+WV + +++ + W A S S +WK +L RE+A +
Sbjct: 1187 LIWRLLSTQPSLWVTWIWTFIIRKGTFWSANERSSLGSWMWKKLLKYRELAKSMHKVEVR 1246
Query: 295 SSQSINFWIDTW 260
+ S +FW D W
Sbjct: 1247 NGSSTSFWYDHW 1258
Score = 35.4 bits (80), Expect(2) = 1e-05
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 19/123 (15%)
Frame = -2
Query: 830 ELPIIHLGVP---GKVRLNAYKPLVEKFRSKIFSWK-NQFSFFGREVGIGEVC*KLITCT 663
+LP+ +LG+P ++ Y PL+E ++KI SW S+ GR + V +
Sbjct: 1063 QLPVRYLGLPLLTKQMTTADYSPLIEAVKTKISSWTARSLSYAGRLALLNSVIVSI---- 1118
Query: 662 G*L*IKFL*G*SKRLKIFFKFPMAWHRS*EEI----YW-----------IKWSDICRPKK 528
+ ++ P R E++ W I WS IC+PKK
Sbjct: 1119 -----------ANFWMSAYRLPAGCIREIEKLCSAFLWSGPVLNPKKAKIAWSSICQPKK 1167
Query: 527 EGG 519
EGG
Sbjct: 1168 EGG 1170