BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Stemona21_contig00011813
         (3940 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...  1663   0.0  
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...  1661   0.0  
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...  1646   0.0  
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...  1645   0.0  
gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]      1612   0.0  
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1601   0.0  
gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus pe...  1596   0.0  
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]      1580   0.0  
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1576   0.0  
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1575   0.0  
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]    1575   0.0  
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    1575   0.0  
ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [S...  1573   0.0  
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]  1572   0.0  
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...  1564   0.0  
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1564   0.0  
ref|XP_004968861.1| PREDICTED: probable RNA-dependent RNA polyme...  1561   0.0  
ref|XP_003561343.1| PREDICTED: probable RNA-dependent RNA polyme...  1555   0.0  
sp|Q8LHH9.1|SHL2_ORYSJ RecName: Full=Probable RNA-dependent RNA ...  1552   0.0  
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu...  1551   0.0  

>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1200

 Score = 1663 bits (4306), Expect = 0.0
 Identities = 794/1193 (66%), Positives = 959/1193 (80%), Gaps = 8/1193 (0%)
 Frame = +3

Query: 105  KELVITQVSFGGFDKSISAKELADFLEDNVGLIWRCRLKASWTPPESFPDFDVTCTPETP 284
            KE V+TQVS GGFD  ++AK+L ++L+  +GL+WRCRLK SWTPPES+P+F++T   +  
Sbjct: 8    KETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEITDITKIE 67

Query: 285  KKDDYMEVPPHAFVHFXXXXXXXXXXXXTGCSELVLHGKPLRMNSGSESSIRVN-RRRTT 461
            + +DY  V PHAFVHF            +G  EL L+ K L+++ G ++   +N RRRTT
Sbjct: 68   RTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTLNQRRRTT 127

Query: 462  DPFKFLNACVEIGTLVSRDKFWASWRGPESGVNFLIDPFDGRCKILFSKNTAFSFKGTRQ 641
             PFK  +   EIG LVSRD+F+  WRGP SGV+FL+DPFDG CK  FS+NTAFS K T +
Sbjct: 128  TPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAFSLKSTSE 187

Query: 642  VAMIKCDFKVEFTVRDINEVKLCTDQAAYTLLFQLSSAPWVYYRTADDDIFESVPCNVLD 821
             A+IKCDFKVEF VRDINE+   T+ +   LL QL+SAPWV+YRTADDDI   VP ++LD
Sbjct: 188  HAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAWVPFDLLD 247

Query: 822  DEDPWIRTTDFTSSGAIGRCSSYRISVSPRFGSKLERALTYLREHRIPQYRSKD---LIQ 992
            D+DPWIRTTDFT+SGAIGRC SYR+S+ PR GSKL +A+ YL+E R+   + ++    I+
Sbjct: 248  DDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEENHRRRIR 307

Query: 993  VQNEPDFGCGMPDPFFCIQHEKGISFATMFLVNAVVHKGIINQHQLSEEFYGLLSSQSDM 1172
            + +EPDFG  M DPFFCI H++GI+F  +FLVNAV+HKGI NQHQLS +F+ LL +Q   
Sbjct: 308  ILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQHTE 367

Query: 1173 VNDISLRHIWSYKRPIFDAYRRLKLVQDWLLKNPKLLKRVKFSDDNAEVRRLVITPTKAY 1352
            VN  +L+HI +Y+RP+F+AYRRLK VQ+WLLKNP L K  K   D  E+RRLVITPTKAY
Sbjct: 368  VNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLVITPTKAY 427

Query: 1353 CLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQQLNANVLTYYVAPIVKDITLNSFPQK 1532
            CLPPEVELSNRVLRKYK+VADRFLRVTFMDEG+Q++N+NVL YYVAPIV+DIT NSFPQK
Sbjct: 428  CLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDITSNSFPQK 487

Query: 1533 TTVFRRVRNILTDGFYLCGRKFSFLAFSSNQLRDRSAWFFANDRNTTVESIRRWMGKFSN 1712
            T +F+RVR+ILT+GFYLCGR++SFLAFS+NQLRD+SAWFF+ +RN +V  ++ WMGKF+N
Sbjct: 488  TRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKSWMGKFTN 547

Query: 1713 RNVAKCAARMGQCFSSTYATVNVPSEEVNAELEDIERNNYIFSDGIGKVVPELAKEVAEK 1892
            RN+AKCAARMGQCFSSTYAT+ VP EEVN++L DIERN Y+FSDGIG + P+LA+EVAEK
Sbjct: 548  RNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDLAREVAEK 607

Query: 1893 LQLSENPPSAYQIRYAGCKGVIAVWPGHDDGIRLSLRPSMNKFESNHTVLEVVQWTRFQP 2072
            L+L  +PP AYQIRYAGCKGV+A WPG  DG+RLSLRPSMNKF+SNHT LE+  WTRFQP
Sbjct: 608  LKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEICSWTRFQP 667

Query: 2073 GFLNRQIVTLLSSLGVIDDVFAKMQDSMIYKLNQMLVNVDVAFEILTTSCAEQGNTAAMM 2252
            GFLNRQI+TLLS+L V D VF KMQ++M+ KLNQM VN DVAF++LT SCA+QGN AA+M
Sbjct: 668  GFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQGNVAAIM 727

Query: 2253 LSAGFKPQTEPHLKGMLSCIRSAQLGDLLAKARIFVPKGRWLMGCLDELGILEQGQCFIQ 2432
            LSAGFKP  EPHL+GML+C+R+AQL DL  K RIFVP GRWLMGCLDELG+LEQGQCFIQ
Sbjct: 728  LSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLEQGQCFIQ 787

Query: 2433 ASTPSLENCFSKHGSRFSRTEQNKKVILGMVAIAKNPCLHPGDIRILEAVDVPNLHHLVD 2612
             S  SLE CF KHG++FS  E+N +VI G V IAKNPCLHPGD+R+LEAVDVP LHHL D
Sbjct: 788  VSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVPGLHHLYD 847

Query: 2613 CLVFPQKGDRPHANEASGSDLDGDLYFVTWDEDLIPPGKRSWVPMDYTAAEARQLPHPVT 2792
            CLVFPQKG+RPH NEASGSDLDGDLYFVTWDE+LIPP KRSW+PM Y AAEA+ L  PV 
Sbjct: 848  CLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKLLARPVN 907

Query: 2793 HQDIIDFFTKNMVNENLGVICNAHVVHADLSEYGALDEKCLQLAELAATAVDFPKTGKIV 2972
            HQDII+FF KNMVN+NLG ICNAHVVHADLSEYGA D+ CL LAELAATAVDFPKTGK+V
Sbjct: 908  HQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVDFPKTGKVV 967

Query: 2973 QMPPALKPKMYPDFMGKDDSQSYKSEKILGRLYRKIKDASDEDF--PSELICTCADLPYD 3146
             MPP LKPKMYPDFMGK++ QSYKSEKILGRLYR+IKDA DED    SEL     D+PYD
Sbjct: 968  SMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNLVPGDIPYD 1027

Query: 3147 TDLDISGASDYLAEAWQSKCAYDAQLNALLGQYRVSSEGEIVTGHIWSMPKYNSRKQGEL 3326
            +DL++ GASDY+++AW  KC+YD QLN LL QY+V  E E+VTGHIWSMPKY+SRKQGEL
Sbjct: 1028 SDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKYSSRKQGEL 1087

Query: 3327 KERLKNAYFALHKEFRRVFETM--SDDQLADDKRSELYEQKASAWYQVTYHPRWVQKSIE 3500
            K+RLK++Y +L KEFR++FE M    +QL D ++++LYEQKASAWYQV YHP WV+KS+E
Sbjct: 1088 KDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHPHWVKKSLE 1147

Query: 3501 MKEPDGDPLPARLSFAWIAADYLVRIKVKCXXXXXXXXXXXXXXXASYLFERI 3659
            +++PDG      LSFAWIAADYL RIK++                A YL +R+
Sbjct: 1148 LQDPDGAGTSVMLSFAWIAADYLARIKIRHRETGNVDSAKPVNSLAKYLADRM 1200


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score = 1661 bits (4302), Expect = 0.0
 Identities = 800/1200 (66%), Positives = 948/1200 (79%), Gaps = 11/1200 (0%)
 Frame = +3

Query: 93   KKEEKELVITQVSFGGFDKSISAKELADFLEDNVGLIWRCRLKASWTPPESFPDFDVTCT 272
            K+ EKE V+TQVSFGGFDK ++A++L  +L++ +G +WRCRLK SWTPPES+P+F++T T
Sbjct: 4    KRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEITDT 63

Query: 273  PETPKKDDYMEVPPHAFVHFXXXXXXXXXXXXTGCSELVLHGKPLRMNSGSESSIRVN-R 449
                + D Y  V PHAFVHF             G  EL  +G+P++++ G E+   +N R
Sbjct: 64   AVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHLNQR 123

Query: 450  RRTTDPFKFLNACVEIGTLVSRDKFWASWRGPESGVNFLIDPFDGRCKILFSKNTAFSFK 629
            RRTT PFK  +  VEIGTLVSRD+F   WRGP SGV+FL+DPFDG+CK  F+++TAFSFK
Sbjct: 124  RRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAFSFK 183

Query: 630  GTRQVAMIKCDFKVEFTVRDINEVKLCTDQAAYTLLFQLSSAPWVYYRTADDDIFESVPC 809
            GT + A+I+CDFK+EF VRDINE+K  TD +   +L QL+SAP V+YRTADDDI   VP 
Sbjct: 184  GTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVLVPF 243

Query: 810  NVLDDEDPWIRTTDFTSSGAIGRCSSYRISVSPRFGSKLERALTYLREHRIPQYRSKDLI 989
            ++LDD+DPWIRTTDFT SGAIGRC+SYR+S+ PR G+KL+RAL +LRE R+ +   +  +
Sbjct: 244  DLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLRRPL 303

Query: 990  QVQNEPDFGCGMPDPFFCIQHEKGISFATMFLVNAVVHKGIINQHQLSEEFYGLLSSQSD 1169
             V  EP++   M DPFFCI HE+G+ F  MFLVNAV+HKGI NQHQLS+ F+ LL +Q  
Sbjct: 304  HVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRNQPL 363

Query: 1170 MVNDISLRHIWSYKRPIFDAYRRLKLVQDWLLKNPKLLKRVKFSDDNAEVRRLVITPTKA 1349
             VN  +LRHI SYK P+FDA++RLK VQ WLLKNPKL +  K  DD  E+RRL ITPT+A
Sbjct: 364  DVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITPTRA 423

Query: 1350 YCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQQLNANVLTYYVAPIVKDITLNSFPQ 1529
            YCLPPEVELSNRVLR+YK++AD+FLRVTFMDEG+Q +NAN LTYY APIV+DIT NSF Q
Sbjct: 424  YCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNSFSQ 483

Query: 1530 KTTVFRRVRNILTDGFYLCGRKFSFLAFSSNQLRDRSAWFFANDRNTTVESIRRWMGKFS 1709
            KT +F+RV++ILTDGFYLCGRK+SFLAFSSNQLRDRSAWFFA D  T+V  IR WMGKF+
Sbjct: 484  KTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNWMGKFT 543

Query: 1710 NRNVAKCAARMGQCFSSTYATVNVPSEEVNAELEDIERNNYIFSDGIGKVVPELAKEVAE 1889
            NRN+AKCAARMGQCFSSTYATV VPS E   +L DIERNNYIFSDGIG + P+LAKEVAE
Sbjct: 544  NRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDLAKEVAE 603

Query: 1890 KLQLSENPPSAYQIRYAGCKGVIAVWPGHDDGIRLSLRPSMNKFESNHTVLEVVQWTRFQ 2069
            KL+L  NPP AYQIRYAGCKGV+A WP H DGIRLSLR SMNKF SNHT LE+  WTRFQ
Sbjct: 604  KLKLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWTRFQ 663

Query: 2070 PGFLNRQIVTLLSSLGVIDDVFAKMQDSMIYKLNQMLVNVDVAFEILTTSCAEQGNTAAM 2249
            PGFLNRQI+TLLS+L V D++F KMQ  M+ KLNQM ++ DVAF+++T SCAEQGNTAA+
Sbjct: 664  PGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQGNTAAI 723

Query: 2250 MLSAGFKPQTEPHLKGMLSCIRSAQLGDLLAKARIFVPKGRWLMGCLDELGILEQGQCFI 2429
            MLSAGF P+TEPHL GML+CIR+AQL  L  K RIFVP GRWLMGCLDELG+LE GQCFI
Sbjct: 724  MLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQCFI 783

Query: 2430 QASTPSLENCFSKHGSRFSRTEQNKKVILGMVAIAKNPCLHPGDIRILEAVDVPNLHHLV 2609
            Q S PSLE+CF KHGSRFS +++  +V+ G V +AKNPCLHPGDIRILEAVD P LHHL 
Sbjct: 784  QVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPELHHLH 843

Query: 2610 DCLVFPQKGDRPHANEASGSDLDGDLYFVTWDEDLIPPGKRSWVPMDYTAAEARQLPHPV 2789
            DCLVFPQKGDRPH NEASGSDLDGDLYFVTWDE+LIPP KRSW+PM Y AAEA+QL  PV
Sbjct: 844  DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQLNRPV 903

Query: 2790 THQDIIDFFTKNMVNENLGVICNAHVVHADLSEYGALDEKCLQLAELAATAVDFPKTGKI 2969
             HQDIIDFF KNMVNENLG ICNAHVVHADLSEYGALDE C++LAELAATAVDFPKTGK+
Sbjct: 904  NHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDFPKTGKL 963

Query: 2970 VQMPPALKPKMYPDFMGKDDSQSYKSEKILGRLYRKIKDASDED--------FPSELICT 3125
            V MPP LKPK+YPDFMGK+D QSY S KILGRLYR++KD  ++D          SEL   
Sbjct: 964  VTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAATSSELNLV 1023

Query: 3126 CADLPYDTDLDISGASDYLAEAWQSKCAYDAQLNALLGQYRVSSEGEIVTGHIWSMPKYN 3305
              D+PYD DL++SG+SDY+ +AW  KC+YD QL  LL QY+V  E E+VTGHIWSMPK N
Sbjct: 1024 RGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIWSMPKCN 1083

Query: 3306 SRKQGELKERLKNAYFALHKEFRRVFETMSDD--QLADDKRSELYEQKASAWYQVTYHPR 3479
            SRKQGELKERLK +Y +L KEFR+VFE M  D  QL +D+++ LYEQKASAWYQV YHP+
Sbjct: 1084 SRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQVAYHPK 1143

Query: 3480 WVQKSIEMKEPDGDPLPARLSFAWIAADYLVRIKVKCXXXXXXXXXXXXXXXASYLFERI 3659
            WV KS+E++EPD     + LSFAWIAADYL RIK++C                 YL +RI
Sbjct: 1144 WVNKSMELQEPDAAGCASMLSFAWIAADYLARIKIRCRGFDGVDTSKPVNSLVKYLADRI 1203


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1198

 Score = 1646 bits (4262), Expect = 0.0
 Identities = 790/1191 (66%), Positives = 951/1191 (79%), Gaps = 6/1191 (0%)
 Frame = +3

Query: 105  KELVITQVSFGGFDKSISAKELADFLEDNVGLIWRCRLKASWTPPESFPDFDVTCTPETP 284
            KE V+TQVS GGFD  ++AK+L ++LE  +GL+WRCRLK SWTPPES+P+F++T   +  
Sbjct: 8    KETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEITDITKIT 67

Query: 285  KKDDYMEVPPHAFVHFXXXXXXXXXXXXTGCSELVLHGKPLRMNSGSESSIRVN-RRRTT 461
            + +DY  V PHAFVHF                EL L+ K L+ + G E+   +N RRR T
Sbjct: 68   RTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTLNQRRRKT 127

Query: 462  DPFKFLNACVEIGTLVSRDKFWASWRGPESGVNFLIDPFDGRCKILFSKNTAFSFKGTRQ 641
             PFK     VEIGTLVSRD+F+  WRGP +GV+FL+DPFDG C+  FS+NTAFSFK T +
Sbjct: 128  TPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAFSFKSTAE 187

Query: 642  VAMIKCDFKVEFTVRDINEVKLCTDQAAYTLLFQLSSAPWVYYRTADDDIFESVPCNVLD 821
             A+IKCDFKVEF VRDINE+K  T+ +   LL QL+SAP V+YRTADDDI  SVP ++LD
Sbjct: 188  HAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVSVPFDLLD 247

Query: 822  DEDPWIRTTDFTSSGAIGRCSSYRISVSPRFGSKLERALTYLREHRIPQYRSKDLIQVQN 1001
            D+DPWIRTTDFT+SGAIGRC SYR+S+ PR G KL +A+ +L+E R+ +   +  I++++
Sbjct: 248  DDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLRRPIRIRD 307

Query: 1002 EPDFGCGMPDPFFCIQHEKGISFATMFLVNAVVHKGIINQHQLSEEFYGLLSSQSDMVND 1181
            EPDFG  M DPFFCI H++GI+F  +FLVNAV+HKGI NQHQLS +F+ LL +Q   VN 
Sbjct: 308  EPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQPTEVNV 367

Query: 1182 ISLRHIWSYKRPIFDAYRRLKLVQDWLLKNPKLLKRVKFSDDNAEVRRLVITPTKAYCLP 1361
             +L+HI+ Y+RP+FDAY++LK+ Q+WLLKNPK  K  K  DD AE+RRLVITPTKAYCLP
Sbjct: 368  AALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITPTKAYCLP 427

Query: 1362 PEVELSNRVLRKYKEVADRFLRVTFMDEGMQQLNANVLTYYVAPIVKDITLNSFPQKTTV 1541
            PEVELSNRVLRKYK+VADRFLRVTFMDEG+Q +N+N L Y+ APIV+ IT  SFPQKT +
Sbjct: 428  PEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYSFPQKTRI 487

Query: 1542 FRRVRNILTDGFYLCGRKFSFLAFSSNQLRDRSAWFFANDRNTTVESIRRWMGKFSNRNV 1721
            F+RVR+ILT+GFYLCGR++SFLAFSSNQLRDRSAWFFA DRN  V +I+ WMGKF+N+N+
Sbjct: 488  FKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMGKFTNKNI 547

Query: 1722 AKCAARMGQCFSSTYATVNVPSEEVNAELEDIERNNYIFSDGIGKVVPELAKEVAEKLQL 1901
            AKCAARMGQCFSSTYAT+ VP EEVN++L DI+RN Y FSDGIG + P+LA+EVAEKL+ 
Sbjct: 548  AKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLAREVAEKLKF 607

Query: 1902 SENPPSAYQIRYAGCKGVIAVWPGHDDGIRLSLRPSMNKFESNHTVLEVVQWTRFQPGFL 2081
              +PP AYQIRYAGCKGV+A WP   DGIRLSLR SMNKF+SNHT+LE+  WTRFQPGFL
Sbjct: 608  DFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWTRFQPGFL 667

Query: 2082 NRQIVTLLSSLGVIDDVFAKMQDSMIYKLNQMLVNVDVAFEILTTSCAEQGNTAAMMLSA 2261
            NRQI+TLLS+L V D VF KMQ+ M+ KLNQMLV+ DVAF++LT SCAEQGN AA+MLSA
Sbjct: 668  NRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGNVAAIMLSA 727

Query: 2262 GFKPQTEPHLKGMLSCIRSAQLGDLLAKARIFVPKGRWLMGCLDELGILEQGQCFIQAST 2441
            GFKPQ EPHL+GML+C+R+AQL  L  KARIFVP GRWLMGCLDELG+LEQGQCFIQ S 
Sbjct: 728  GFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSN 787

Query: 2442 PSLENCFSKHGSRFSRTEQNKKVILGMVAIAKNPCLHPGDIRILEAVDVPNLHHLVDCLV 2621
              LENCF KHGS+FS T++N +V+ G V IAKNPCLHPGDIRILEAVD P LHHL DCLV
Sbjct: 788  SYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLV 847

Query: 2622 FPQKGDRPHANEASGSDLDGDLYFVTWDEDLIPPGKRSWVPMDYTAAEARQLPHPVTHQD 2801
            FPQKG+RPHANEASGSDLDGDLYFVTWDE+LIPP KRSW+PM Y AAEA+QL  PV HQD
Sbjct: 848  FPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLTRPVNHQD 907

Query: 2802 IIDFFTKNMVNENLGVICNAHVVHADLSEYGALDEKCLQLAELAATAVDFPKTGKIVQMP 2981
            I++FF KNM NENLG ICNAHVV ADLSEYGALDEKCL LAELAATAVDFPKTGKIV MP
Sbjct: 908  IVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPKTGKIVSMP 967

Query: 2982 PALKPKMYPDFMGKDDSQSYKSEKILGRLYRKIKDASDED---FPSELICTCADLPYDTD 3152
              LKPK+YPDFMGK++ QSYKS+KILGRLYR+IKDA D+D     SEL     D+PYD D
Sbjct: 968  SDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFVRGDIPYDLD 1027

Query: 3153 LDISGASDYLAEAWQSKCAYDAQLNALLGQYRVSSEGEIVTGHIWSMPKYNSRKQGELKE 3332
            L++ GA+D++++AW  KC+YD QLN LL QY+V  E E+VTGH+WSMPK +SRKQG+LKE
Sbjct: 1028 LEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSSRKQGDLKE 1087

Query: 3333 RLKNAYFALHKEFRRVFETMSDD--QLADDKRSELYEQKASAWYQVTYHPRWVQKSIEMK 3506
            RLK++Y  L +EFR+VFE M  D  QL DD+++ LYE+KASAWYQVTYHP W+QKS+E++
Sbjct: 1088 RLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPHWIQKSLELQ 1147

Query: 3507 EPDGDPLPARLSFAWIAADYLVRIKVKCXXXXXXXXXXXXXXXASYLFERI 3659
            + DG  +   LSFAWIAADYL RIK++                A YL +R+
Sbjct: 1148 DSDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAKYLADRM 1198


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score = 1645 bits (4261), Expect = 0.0
 Identities = 816/1196 (68%), Positives = 964/1196 (80%), Gaps = 10/1196 (0%)
 Frame = +3

Query: 102  EKELVITQVSFGGFDKSISAKELADFLEDNVGLIWRCRLKASWTPPESFPDFDVTCTPET 281
            EK++V+TQ+S GGFD+ ++A EL  +LED +G + RCRLK S TPPES+PDF++  T + 
Sbjct: 7    EKDMVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEIIDTAKI 66

Query: 282  PKKDDYMEVPPHAFVHFXXXXXXXXXXXXTGCSELVLHGKPLRMNSGSESSIRVN-RRRT 458
             + +DY +V PHAFVHF             G SEL LHGKPL+++ G E+   +N RRRT
Sbjct: 67   ERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHLNQRRRT 126

Query: 459  TDPFKFLNACVEIGTLVSRDKFWASWRGPESGVNFLIDPFDGRCKILFSKNTAFSFKGTR 638
            T PFKF +  +EIG LVSRD+++A WRGP SGV+FL+DPFDG CK LF+K+TAFSFKG  
Sbjct: 127  TFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAFSFKGMP 186

Query: 639  QVAMIKCDFKVEFTVRDINEVKLCTDQAAYTLLFQLSSAPWVYYRTADDDIFESVPCNVL 818
            + A+IKC+FKVEF VR+INEV+   D ++  LL QLSS+P+VYYRTADDDI E+VP ++L
Sbjct: 187  KHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEETVPFDLL 246

Query: 819  DDEDPWIRTTDFTSSGAIGRCSSYRISVSPRFGSKLERALTYLREHRIPQYRS--KDLIQ 992
            DD+DPWIRTTDFT SGAIGRC+SYRIS+ PR+G+KL++A+ YLR  R+       K  ++
Sbjct: 247  DDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDSPKWQLR 306

Query: 993  VQNEPDFGCGMPDPFFCIQHEKGISFATMFLVNAVVHKGIINQHQLSEEFYGLLSSQSDM 1172
            V++EPDFG  M DPFFCIQH++GI F  MFLVNAV+HKGIINQHQLS++F+ LL SQ   
Sbjct: 307  VRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQQKD 366

Query: 1173 VNDISLRHIWSYKRPIFDAYRRLKLVQDWLLKNPKLLKRVKFSDDNAEVRRLVITPTKAY 1352
            +N  +L+HI SY+ P+FDAY+RLKLV  WLLKNPKLLK  K  DD  EVRRLVITP+KAY
Sbjct: 367  INIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVITPSKAY 426

Query: 1353 CLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQQLNANVLTYYVAPIVKDITLNSFPQK 1532
            CLPPEVELSNRVLR YKEV+DRFLRVTFMDEGMQ +NANVL YYVAPIVK IT NSFPQK
Sbjct: 427  CLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITSNSFPQK 486

Query: 1533 TTVFRRVRNILTDGFYLCGRKFSFLAFSSNQLRDRSAWFFANDRNTTVESIRRWMGKFSN 1712
            T VF+RV+ ILTDGFYLCGRK+SFLAFSSNQLRDRSAWFFA D+ T+V +I+ WMGKF+N
Sbjct: 487  TRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSWMGKFTN 546

Query: 1713 RNVAKCAARMGQCFSSTYATVNVPSEEVNAELEDIERNNYIFSDGIGKVVPELAKEVAEK 1892
            RNVAKCAARMGQCFSSTYATV VPS EV  EL DI+RN Y FSDGIGK+VP+LA EVAEK
Sbjct: 547  RNVAKCAARMGQCFSSTYATVEVPSWEVK-ELPDIKRNGYDFSDGIGKIVPDLAMEVAEK 605

Query: 1893 LQLSENPPSAYQIRYAGCKGVIAVWPGHDDGIRLSLRPSMNKFESNHTVLEVVQWTRFQP 2072
            L+L E  PSAYQIRYAGCKGV+A WP  +DGIRLS RPSMNKF S+HT+LE+  WTRFQP
Sbjct: 606  LKL-EGTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICSWTRFQP 664

Query: 2073 GFLNRQIVTLLSSLGVIDDVFAKMQDSMIYKLNQMLVNVDVAFEILTTSCAEQGNTAAMM 2252
            GFLNRQIVTLLS+L V D +F KMQ+SMI KLNQML + DVAF++L  SCAEQGNTAA+M
Sbjct: 665  GFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQGNTAAIM 724

Query: 2253 LSAGFKPQTEPHLKGMLSCIRSAQLGDLLAKARIFVPKGRWLMGCLDELGILEQGQCFIQ 2432
            LSAGFKPQTEPHL+GML+CIR+AQ   L  KARIFVP GRWLMGCLDELG+LEQGQCFIQ
Sbjct: 725  LSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQ 784

Query: 2433 ASTPSLENCFSKHGSRFSRTEQNKKVILGMVAIAKNPCLHPGDIRILEAVDVPNLHHLVD 2612
             S+PSLENCF KHGSRFS  ++N KVI G+VAIAKNPCLHPGD+RILEAVD P L HLVD
Sbjct: 785  VSSPSLENCFLKHGSRFS-AQKNLKVIKGIVAIAKNPCLHPGDVRILEAVDAPGLEHLVD 843

Query: 2613 CLVFPQKGDRPHANEASGSDLDGDLYFVTWDEDLIPPGKRSWVPMDYTAAEARQLPHPVT 2792
            CLVFPQKGDRPH+NEASGSDLDGDLYFVTW+E LIPP K+SW PM Y +AEA+ L   VT
Sbjct: 844  CLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKALAREVT 903

Query: 2793 HQDIIDFFTKNMVNENLGVICNAHVVHADLSEYGALDEKCLQLAELAATAVDFPKTGKIV 2972
              DIIDFFTKNMVNENLG ICNAHVVHAD SEYGALDE CL LAE AATAVDFPKTGK+V
Sbjct: 904  SLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFPKTGKLV 963

Query: 2973 QMPPALKPKMYPDFMGKDDSQSYKSEKILGRLYRKIKDASDEDF--PSELICTCADLPYD 3146
             +PP LKPKMYPDFMGK++ Q+Y+S KILG++YR+IKDA +ED    SE I     +P+D
Sbjct: 964  TLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGADKVPFD 1023

Query: 3147 TDLDISGASDYLAEAWQSKCAYDAQLNALLGQYRVSSEGEIVTGHIWSMPKYNSRKQGEL 3326
             DL I G++D++ +AW  KC+YD QLN LLGQY+V  E E+VTGH+WSMPKY SRKQGEL
Sbjct: 1024 EDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKSRKQGEL 1083

Query: 3327 KERLKNAYFALHKEFRRVFETMSD--DQLADDKRSELYEQKASAWYQVTYHPRWVQKSIE 3500
             ERLK+AY +L KEFR++FE M+   DQL DD+++ LYEQKASAWYQVTYHP WV+KS+E
Sbjct: 1084 TERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTWVKKSLE 1143

Query: 3501 MKEPD---GDPLPARLSFAWIAADYLVRIKVKCXXXXXXXXXXXXXXXASYLFERI 3659
            ++ PD   G+ +   LSFAWI ADYL RIK++                A +L +RI
Sbjct: 1144 LQNPDEVFGERV--MLSFAWITADYLARIKIRRKGTGNVDSSKPINSLARFLVDRI 1197


>gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
          Length = 1197

 Score = 1612 bits (4173), Expect = 0.0
 Identities = 774/1191 (64%), Positives = 946/1191 (79%), Gaps = 5/1191 (0%)
 Frame = +3

Query: 102  EKELVITQVSFGGFDKSISAKELADFLEDNVGLIWRCRLKASWTPPESFPDFDVTCTPET 281
            EK+ V+TQVS GGF + ++AK+L ++ ++ VG++WRCRLK SWTPPES+P+F++  +   
Sbjct: 7    EKDTVVTQVSVGGFGRHVAAKDLMEYFDNEVGVVWRCRLKTSWTPPESYPNFEILDSTVI 66

Query: 282  PKKDDYMEVPPHAFVHFXXXXXXXXXXXXTGCSELVLHGKPLRMNSGSESSIRVNRRR-T 458
             + DDY +V PHAFVHF             G +ELV + + L+++ G E+   +NRRR  
Sbjct: 67   QRTDDYKKVEPHAFVHFASPLTATWAVDAAGRTELVFNNQLLKVSLGPENPYYLNRRRRN 126

Query: 459  TDPFKFLNACVEIGTLVSRDKFWASWRGPESGVNFLIDPFDGRCKILFSKNTAFSFKGTR 638
            T PFK  + C++IG +VSRD+F+  WRGP  GV+FL+DPFDG CK  FS++TAFSFKGT 
Sbjct: 127  TTPFKLSDVCLDIGGMVSRDEFFVGWRGPPFGVDFLVDPFDGTCKFCFSRDTAFSFKGTT 186

Query: 639  QVAMIKCDFKVEFTVRDINEVKLCTDQAAYTLLFQLSSAPWVYYRTADDDIFESVPCNVL 818
            + A+IKCDFKVEF VRDINE+K  T+ +   +  QL+S+P V+YRTADD+I ESVP ++L
Sbjct: 187  EYAVIKCDFKVEFLVRDINEIKQYTEPSGLVVFLQLASSPRVWYRTADDEIEESVPFDLL 246

Query: 819  DDEDPWIRTTDFTSSGAIGRCSSYRISVSPRFGSKLERALTYLREHRIPQYRSKDLIQVQ 998
            DD+D WIRTTDFT SGAIGRC++YR+ + PR G+KL++AL YLRE R+P    +  +++ 
Sbjct: 247  DDDDQWIRTTDFTPSGAIGRCNTYRVVIRPRHGAKLKKALDYLREQRVPMDYVRWPLRIS 306

Query: 999  NEPDFGCGMPDPFFCIQHEKGISFATMFLVNAVVHKGIINQHQLSEEFYGLLSSQSDMVN 1178
            +EPDFG  M DPF+CI +++GI F  MFLVNAV+HKGI NQHQLSE+F+ LL  Q   VN
Sbjct: 307  DEPDFGRSMSDPFYCIDYKEGIPFEIMFLVNAVMHKGIFNQHQLSEDFFNLLRDQPREVN 366

Query: 1179 DISLRHIWSYKRPIFDAYRRLKLVQDWLLKNPKLLKRVKFSDDNAEVRRLVITPTKAYCL 1358
              +L+HI+SY+RP+FDAY+RLK V DWLL+NP L K  K  DD  E+RRLVITPTKA+CL
Sbjct: 367  VAALKHIYSYRRPVFDAYKRLKTVHDWLLRNPILFKSPKQLDDIVEIRRLVITPTKAHCL 426

Query: 1359 PPEVELSNRVLRKYKEVADRFLRVTFMDEGMQQLNANVLTYYVAPIVKDITLNSFPQKTT 1538
             PEVELSNRVLRKYKEVADRFLRVTFMDEGMQ +NANVLTYY A IV+D+T   F QKT 
Sbjct: 427  LPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTINANVLTYYAASIVRDVTSTFFSQKTG 486

Query: 1539 VFRRVRNILTDGFYLCGRKFSFLAFSSNQLRDRSAWFFANDRNTTVESIRRWMGKFSNRN 1718
            VF+RVR+ILTDGFYLCGRK+SFLAFS+NQLRD SAWFFA D  T+V  I RWMGKF+NRN
Sbjct: 487  VFKRVRSILTDGFYLCGRKYSFLAFSANQLRDSSAWFFAEDGKTSVLQILRWMGKFTNRN 546

Query: 1719 VAKCAARMGQCFSSTYATVNVPSEEVNAELEDIERNNYIFSDGIGKVVPELAKEVAEKLQ 1898
            +AKCAARMGQCFSSTYATV VPS EVN  L DIERN Y+FSDGIGK+ P+LAKEVA+KL+
Sbjct: 547  IAKCAARMGQCFSSTYATVEVPSTEVNPFLPDIERNGYVFSDGIGKITPDLAKEVAQKLK 606

Query: 1899 LSENPPSAYQIRYAGCKGVIAVWPGHDDGIRLSLRPSMNKFESNHTVLEVVQWTRFQPGF 2078
            L  NPP AYQIRYAGCKGV+A WP   DG+RLSLR SMNKF S+HT LE+  WTRFQPGF
Sbjct: 607  LDLNPPCAYQIRYAGCKGVVACWPEEGDGVRLSLRCSMNKFFSDHTTLEICSWTRFQPGF 666

Query: 2079 LNRQIVTLLSSLGVIDDVFAKMQDSMIYKLNQMLVNVDVAFEILTTSCAEQGNTAAMMLS 2258
            LNRQI+TLLS+  V D+VF +MQ++M+ KLN++LV+ DVAFE+LT+SC+EQGN AA+MLS
Sbjct: 667  LNRQIITLLSTQYVPDEVFWEMQNTMVSKLNKILVDTDVAFEVLTSSCSEQGNAAAIMLS 726

Query: 2259 AGFKPQTEPHLKGMLSCIRSAQLGDLLAKARIFVPKGRWLMGCLDELGILEQGQCFIQAS 2438
            AGFKPQTEPHL+G+L+C+R++QL  L  KARIFVP GRWLMG LDELG+LEQGQCFIQ S
Sbjct: 727  AGFKPQTEPHLRGILTCVRASQLCGLREKARIFVPSGRWLMGVLDELGVLEQGQCFIQVS 786

Query: 2439 TPSLENCFSKHGSRFSRTEQNKKVILGMVAIAKNPCLHPGDIRILEAVDVPNLHHLVDCL 2618
             PS+ENCF KHGSRF+ T++N +VI G+V IAKNPCLHPGDIRILEAVD P LHHL DCL
Sbjct: 787  NPSVENCFLKHGSRFAETKKNFEVIQGLVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCL 846

Query: 2619 VFPQKGDRPHANEASGSDLDGDLYFVTWDEDLIPPGKRSWVPMDYTAAEARQLPHPVTHQ 2798
            VFPQKG+RPH NEASGSDLDGDLYFVTW++ LIPPGK+SW PM Y   E +++   V H+
Sbjct: 847  VFPQKGERPHTNEASGSDLDGDLYFVTWEDLLIPPGKKSWPPMQYDPGETKEIQREVNHK 906

Query: 2799 DIIDFFTKNMVNENLGVICNAHVVHADLSEYGALDEKCLQLAELAATAVDFPKTGKIVQM 2978
            DIIDFF KNMVNE+LG ICNAHVVHADLSEYGALDEKC+ LAELAATAVDFPKTGKIV M
Sbjct: 907  DIIDFFAKNMVNEHLGTICNAHVVHADLSEYGALDEKCIHLAELAATAVDFPKTGKIVSM 966

Query: 2979 PPALKPKMYPDFMGKDDSQSYKSEKILGRLYRKIKDASDEDF--PSELICTCADLPYDTD 3152
            P  LKPK+YPDFMGK++ QSYKS KILGRLYR IKD  DED    SE+     D+ YDTD
Sbjct: 967  PANLKPKLYPDFMGKEEYQSYKSRKILGRLYRHIKDVYDEDLSESSEINLDSPDINYDTD 1026

Query: 3153 LDISGASDYLAEAWQSKCAYDAQLNALLGQYRVSSEGEIVTGHIWSMPKYNSRKQGELKE 3332
            L+++G++DY+ +AW  KC+YD QL  LLGQY+V  E E+VTGHIWSMPKY SRK G+LKE
Sbjct: 1027 LEVTGSADYIDDAWVKKCSYDRQLIGLLGQYKVKREEEVVTGHIWSMPKYTSRKLGDLKE 1086

Query: 3333 RLKNAYFALHKEFRRVFETMSD--DQLADDKRSELYEQKASAWYQVTYHPRWVQKSIEMK 3506
            +L ++Y AL KEFR++FE+M    +QL +D+R+ELYE+KASAWYQVTYHP+WV+K +E++
Sbjct: 1087 KLGHSYGALRKEFRQIFESMDSEIEQLNEDERNELYERKASAWYQVTYHPKWVEKKLELQ 1146

Query: 3507 EPDGDPLPARLSFAWIAADYLVRIKVKCXXXXXXXXXXXXXXXASYLFERI 3659
            + DG      LSFAWIAADYL RIK++                  YL ++I
Sbjct: 1147 KSDGADPVVMLSFAWIAADYLARIKIRSQGTGNVDFSKPVNSLVKYLADKI 1197


>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
            sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
            sinensis]
          Length = 1197

 Score = 1601 bits (4145), Expect = 0.0
 Identities = 789/1196 (65%), Positives = 945/1196 (79%), Gaps = 6/1196 (0%)
 Frame = +3

Query: 90   PKKEEKELVITQVSFGGFDKSISAKELADFLEDNVGLIWRCRLKASWTPPESFPDFDVTC 269
            P+  EK LV  QVSFGGFD+++ A EL  +LE+ VG +WRCRLK S TP ES+PDF VT 
Sbjct: 3    PEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFSVTN 62

Query: 270  TPETPKKDDYMEVPPHAFVHFXXXXXXXXXXXXTGCSELVLHGKPLRMNSGSESSIRVNR 449
            T E  K DDY +V PHAFVHF             G +EL L+G+ L+++ G E+  R+N+
Sbjct: 63   TAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENPFRLNQ 122

Query: 450  R-RTTDPFKFLNACVEIGTLVSRDKFWASWRGPESGVNFLIDPFDGRCKILFSKNTAFSF 626
            R RT+ PFK  + CVEIGTLVSRD+F+ +WRGP SG +FL+DPFDG CK  F+++ AF+ 
Sbjct: 123  RGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFAL 182

Query: 627  KGTRQVAMIKCDFKVEFTVRDINEVKLCTDQAAYTLLFQLSSAPWVYYRTADDDIFESVP 806
            K + + A+IKC+FKVEF VR+IN VK  ++ +   +L QL+S+P V+YRTADDDI   VP
Sbjct: 183  KSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVP 242

Query: 807  CNVLDDEDPWIRTTDFTSSGAIGRCSSYRISVSPRFGSKLERALTYLREHRIPQYRSKDL 986
             ++LDD+DPWIRTTDFT SGAIGRC+SYRIS+S R   KL + +TYL E R+        
Sbjct: 243  FDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRP 302

Query: 987  IQVQNEPDFGCGMPDPFFCIQHEKGISFATMFLVNAVVHKGIINQHQLSEEFYGLLSSQS 1166
            I ++ EPDF   M DPFFCI +E+GISF  MFLVNAV+HKGIINQHQLS+ F+ LL  QS
Sbjct: 303  ITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQS 362

Query: 1167 DMVNDISLRHIWSYKRPIFDAYRRLKLVQDWLLKNPKLLKRVKFSDDNAEVRRLVITPTK 1346
              VN  +L+HI+SYK P+FDA +RLKLVQ+WLLK+P+L K  K  DD  EVRRLVITPTK
Sbjct: 363  REVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTK 422

Query: 1347 AYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQQLNANVLTYYVAPIVKDITLNSFP 1526
            AYCLPPEVELSNRVLRKYK++ADRFLRVTFMDEG+Q +NANVL+Y++APIV+DITLNSF 
Sbjct: 423  AYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFS 482

Query: 1527 QKTTVFRRVRNILTDGFYLCGRKFSFLAFSSNQLRDRSAWFFANDRNTTVESIRRWMGKF 1706
            QKT VF+RVR+IL+ GFYLCGRKFSFLAFSS+QLRD SAWFF+ D  T+V  I++WMG+F
Sbjct: 483  QKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKWMGRF 542

Query: 1707 SNRNVAKCAARMGQCFSSTYATVNVPSEEVNAELEDIERNNYIFSDGIGKVVPELAKEVA 1886
            +++N+AKCAARMGQCFSSTYATV VP  EV+ EL DI+RN Y+FSDGIGK+ P+LA EVA
Sbjct: 543  TDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVA 602

Query: 1887 EKLQLSEN-PPSAYQIRYAGCKGVIAVWPGHDDGIRLSLRPSMNKFESNHTVLEVVQWTR 2063
            +KL+L  N PP AYQIRYAGCKGV+A WP   DGIR+SLR SMNKF+S+HT LE+  WTR
Sbjct: 603  QKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTR 662

Query: 2064 FQPGFLNRQIVTLLSSLGVIDDVFAKMQDSMIYKLNQMLVNVDVAFEILTTSCAEQGNTA 2243
            FQPGFLNRQI+TLLS+L V D++F  MQDSM+ KLNQMLV+ DVAFE+LT +CAEQGNTA
Sbjct: 663  FQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTA 722

Query: 2244 AMMLSAGFKPQTEPHLKGMLSCIRSAQLGDLLAKARIFVPKGRWLMGCLDELGILEQGQC 2423
            A+MLSAGF PQTEPHL+GML+CIR+AQL  L  KARIFVP GRWLMGCLDELG+LE GQC
Sbjct: 723  AIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQC 782

Query: 2424 FIQASTPSLENCFSKHGSRFSRTEQNKKVILGMVAIAKNPCLHPGDIRILEAVDVPNLHH 2603
            FIQ S P L NCFSKHGSRF+ T++  +VI G V IAKNPCLHPGDIRILEAVD P LHH
Sbjct: 783  FIQVSEPFLGNCFSKHGSRFAETKK-LQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHH 841

Query: 2604 LVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDEDLIPPGKRSWVPMDYTAAEARQLPH 2783
            L DCLVFPQKGDRPH NEASGSDLDGDLYFVTWDE+LIPP K+SW PM+Y AAEA+ L  
Sbjct: 842  LYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTR 901

Query: 2784 PVTHQDIIDFFTKNMVNENLGVICNAHVVHADLSEYGALDEKCLQLAELAATAVDFPKTG 2963
            PV  +DII+FF K+MVNENLG ICNAHVVHAD SEYGALDE C+ LAELAATAVDFPKTG
Sbjct: 902  PVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTG 961

Query: 2964 KIVQMPPALKPKMYPDFMGKDDSQSYKSEKILGRLYRKIKDASDEDF--PSELICTCADL 3137
            KIV MP  LKPK+YPDFMGK+  QSYKS KILGRLYR+ KDA DED    SE+     D+
Sbjct: 962  KIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDI 1021

Query: 3138 PYDTDLDISGASDYLAEAWQSKCAYDAQLNALLGQYRVSSEGEIVTGHIWSMPKYNSRKQ 3317
             YDTDL++  + D++A+AW  KC+YD QLN LL QY+V+ E E+VTGHIWSMPKYNSRKQ
Sbjct: 1022 HYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQ 1081

Query: 3318 GELKERLKNAYFALHKEFRRVFETMSDD--QLADDKRSELYEQKASAWYQVTYHPRWVQK 3491
            GELKERLK++Y AL KEFR+VFE M  D   L++D+++ L+E+KASAWYQVTYHP WV+K
Sbjct: 1082 GELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKK 1141

Query: 3492 SIEMKEPDGDPLPARLSFAWIAADYLVRIKVKCXXXXXXXXXXXXXXXASYLFERI 3659
            S++++E D       LSFAWIA DYL RIK++C               A Y+ +RI
Sbjct: 1142 SLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197


>gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
          Length = 1196

 Score = 1596 bits (4132), Expect = 0.0
 Identities = 779/1192 (65%), Positives = 940/1192 (78%), Gaps = 6/1192 (0%)
 Frame = +3

Query: 102  EKELVITQVSFGGFDKSISAKELADFLEDNVGLIWRCRLKASWTPPESFPDFDVTCTPET 281
            E   V+TQVSFGGF     AK+L  +LED +GL++RCRLK SWTPPESFP+F++  T + 
Sbjct: 7    ENGSVVTQVSFGGFQHHARAKDLVTYLEDEIGLVYRCRLKTSWTPPESFPNFEIN-TADV 65

Query: 282  PKKDDYMEVPPHAFVHFXXXXXXXXXXXXTGCSELVLHGKPLRMNSGSESSIRVNRRRTT 461
             + DDY  V PHAFVHF             G  EL  + +PL+++ G E+   +NRRR T
Sbjct: 66   KRTDDYSRVEPHAFVHFVSPDSVTFAMDAAGRCELFFNNEPLKVSLGPENPYFLNRRRRT 125

Query: 462  D-PFKFLNACVEIGTLVSRDKFWASWRGPESGVNFLIDPFDGRCKILFSKNTAFSFKGTR 638
              PFK  +  VEIG+LV +D+F+ASWRGP  GV+F++DPFDG CK  F+ +TAFSFKGT+
Sbjct: 126  KTPFKLSDVHVEIGSLVRQDEFFASWRGPPYGVDFIVDPFDGTCKFCFTMDTAFSFKGTK 185

Query: 639  QVAMIKCDFKVEFTVRDINEVKLCTDQAAYTLLFQLSSAPWVYYRTADDDIFESVPCNVL 818
            + A+IKCDFKVEF VR+I E+K  TD +   +L +L+S+PWV YRTADDDI +SVP ++L
Sbjct: 186  KHAVIKCDFKVEFLVREIAEIKQYTDTSYLVILLRLTSSPWVSYRTADDDIDQSVPFDLL 245

Query: 819  DDEDPWIRTTDFTSSGAIGRCSSYRISVSPRFGSKLERALTYLREHRIPQYRSKDLIQVQ 998
            DD+DPWIRTTDFT SGAIGRC+SYR+ + PR G+KL++A+ YLRE R+ +   K   ++Q
Sbjct: 246  DDDDPWIRTTDFTPSGAIGRCNSYRVLIPPRHGAKLKKAMNYLRERRVKEVCIKWPPKIQ 305

Query: 999  NEPDFGCGMPDPFFCIQHEKGISFATMFLVNAVVHKGIINQHQLSEEFYGLLSSQSDMVN 1178
            +EPDFG    +PFF IQ+E+GISF  MFLVNAV+HKG +NQHQLS+ F+ LL SQ   +N
Sbjct: 306  DEPDFGMSNTEPFFSIQYEEGISFEIMFLVNAVMHKGTVNQHQLSDSFFHLLRSQPKEIN 365

Query: 1179 DISLRHIWSYKRPIFDAYRRLKLVQDWLLKNPKLLKRVKFSDDNAEVRRLVITPTKAYCL 1358
              +L+H+ SY+ P+FDA  RLK+VQDWLLKNPKL+K  K  DD AEVRRLVITPTKAYCL
Sbjct: 366  VAALKHLCSYRSPVFDACERLKVVQDWLLKNPKLVKDPKRLDDIAEVRRLVITPTKAYCL 425

Query: 1359 PPEVELSNRVLRKYKEVADRFLRVTFMDEGMQQLNANVLTYYVAPIVKDITLNSFPQKTT 1538
            PPEVELSNRVLRKYKEVADRFLRVTFMDEGMQ++N+NVL YYVAPIVK+IT NSF QKT 
Sbjct: 426  PPEVELSNRVLRKYKEVADRFLRVTFMDEGMQKINSNVLNYYVAPIVKEITSNSFLQKTN 485

Query: 1539 VFRRVRNILTDGFYLCGRKFSFLAFSSNQLRDRSAWFFANDRNTTVESIRRWMGKFSNRN 1718
            VF+R R IL DGFYLCGRK++FLAFSSNQLRDRSAWFFA   N +V  I  WMGKF+N+N
Sbjct: 486  VFKRFRTILNDGFYLCGRKYTFLAFSSNQLRDRSAWFFAECVNISVGKITSWMGKFNNKN 545

Query: 1719 VAKCAARMGQCFSSTYATVNVPSEEVNAELEDIERNNYIFSDGIGKVVPELAKEVAEKLQ 1898
            VAKCAARMGQCFSSTYATV V S EVN ++ DI+RN Y+FSDGIG + P+LA EVAEKL+
Sbjct: 546  VAKCAARMGQCFSSTYATVEVTSSEVN-DIPDIKRNGYVFSDGIGMITPDLALEVAEKLK 604

Query: 1899 LSENPPSAYQIRYAGCKGVIAVWPGHDDGIRLSLRPSMNKFESNHTVLEVVQWTRFQPGF 2078
            L  NPP AYQIR+AGCKGV+A WP   DG RLSLR SMNKFES HT LE+  WTR+QPGF
Sbjct: 605  LDRNPPCAYQIRFAGCKGVVACWPSKGDGFRLSLRTSMNKFESKHTTLEICSWTRYQPGF 664

Query: 2079 LNRQIVTLLSSLGVIDDVFAKMQDSMIYKLNQMLVNVDVAFEILTTSCAEQGNTAAMMLS 2258
            LNRQI+TLLS+L V D++F +MQ+ M+ KLNQMLV+ DVAF++LT SCAEQGN AA+MLS
Sbjct: 665  LNRQIITLLSTLNVEDEIFWRMQEKMVLKLNQMLVDTDVAFDVLTASCAEQGNAAAIMLS 724

Query: 2259 AGFKPQTEPHLKGMLSCIRSAQLGDLLAKARIFVPKGRWLMGCLDELGILEQGQCFIQAS 2438
            AGFKPQTEPHL+GML+CI++AQL  L  KARIFV  GRWLMG LDELG+LEQGQCF+Q S
Sbjct: 725  AGFKPQTEPHLRGMLTCIQAAQLWGLREKARIFVHSGRWLMGVLDELGVLEQGQCFVQVS 784

Query: 2439 TPSLENCFSKHGSRFSRTEQNKKVILGMVAIAKNPCLHPGDIRILEAVDVPNLHHLVDCL 2618
            TP LE+CF+KHGS F++ E+N +VI G V IAKNPCLHPGDIRILEAVD P LHHL DCL
Sbjct: 785  TPLLESCFAKHGSSFAQIERNLQVIKGHVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCL 844

Query: 2619 VFPQKGDRPHANEASGSDLDGDLYFVTWDEDLIPPGKRSWVPMDYTAAEARQLPHPVTHQ 2798
            VFPQKGDRPH +EASGSDLDGDLYFVTWDE+LIPP K+SW+PM Y  AEA+    PVT Q
Sbjct: 845  VFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSKKSWMPMQYDPAEAKLQGRPVTQQ 904

Query: 2799 DIIDFFTKNMVNENLGVICNAHVVHADLSEYGALDEKCLQLAELAATAVDFPKTGKIVQM 2978
            DIIDFF KNM NENLG ICNAHVVHAD S+YGALD  CL+LAELAA AVDFPKTGKIV +
Sbjct: 905  DIIDFFVKNMTNENLGPICNAHVVHADRSDYGALDVNCLKLAELAALAVDFPKTGKIVSL 964

Query: 2979 PPALKPKMYPDFMGKDDSQSYKSEKILGRLYRKIKDASDED--FPSELICTCADLPYDTD 3152
            P  LKP++YPDF+GK+D+QSYKS KILGRLYRK++DA DED    SEL    +D+PYD D
Sbjct: 965  PQHLKPRLYPDFLGKEDNQSYKSTKILGRLYRKVRDAYDEDAATSSELHYFPSDIPYDMD 1024

Query: 3153 LDISGASDYLAEAWQSKCAYDAQLNALLGQYRVSSEGEIVTGHIWSMPKYNSRKQGELKE 3332
            L++ GA+D++ +AW+ KC+YD QL  L+GQY+V  E EIVTGH+WS+PK NS+KQGELKE
Sbjct: 1025 LEVPGAADFVFDAWEKKCSYDGQLKGLMGQYKVKREEEIVTGHVWSIPKSNSKKQGELKE 1084

Query: 3333 RLKNAYFALHKEFRRVFETMSD--DQLADDKRSELYEQKASAWYQVTYHPRWVQKSIEMK 3506
            RL ++Y AL KEFR++FE +    + L DD+++ L E+KASAWYQVTYHP+WV++S  ++
Sbjct: 1085 RLSHSYNALKKEFRQMFENLDSNLEALTDDEKNLLCEKKASAWYQVTYHPKWVKQSPPLQ 1144

Query: 3507 EPDG-DPLPARLSFAWIAADYLVRIKVKCXXXXXXXXXXXXXXXASYLFERI 3659
            EPDG   +   LSFAWIAADYL RIK+KC                 YL +RI
Sbjct: 1145 EPDGPGDVVVMLSFAWIAADYLARIKIKCHGVEHIDSTKPINSLKRYLADRI 1196


>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
          Length = 1194

 Score = 1580 bits (4092), Expect = 0.0
 Identities = 771/1192 (64%), Positives = 937/1192 (78%), Gaps = 6/1192 (0%)
 Frame = +3

Query: 102  EKELVITQVSFGGFDKSISAKELADFLEDNVGLIWRCRLKASWTPPESFPDFDVTCTPET 281
            EK+ V+TQ+S GGFD+ + AK+L DFLE  VG+++RCRLK S T  ES+P F+   +   
Sbjct: 7    EKDTVVTQISIGGFDRHVKAKDLMDFLEYEVGIVYRCRLKTSCTARESYPTFENINSENI 66

Query: 282  PKKDDYMEVPPHAFVHFXXXXXXXXXXXXTGCSELVLHGKPLRMNSGSESSIRVN-RRRT 458
             +  D  +V PHAFVHF            T  + L+L+ + L++  G E+  R+N RRRT
Sbjct: 67   MESIDIRQVEPHAFVHFASPESVNW----TLSNPLMLNNQTLKVTLGPETLYRMNQRRRT 122

Query: 459  TDPFKFLNACVEIGTLVSRDKFWASWRGPESGVNFLIDPFDGRCKILFSKNTAFSFKGTR 638
            T P K  +  VEIG LV RD+F+ +WRGP  GV+FL+DPFDG CK  F+++TAFSFK   
Sbjct: 123  TTPIKLADVIVEIGNLVRRDEFFVAWRGPSYGVDFLVDPFDGLCKFCFTRDTAFSFKDMA 182

Query: 639  QVAMIKCDFKVEFTVRDINEVKLCTDQAAYTLLFQLSSAPWVYYRTADDDIFESVPCNVL 818
            ++AM+KCDFKVEF VRDINE+K  TD +   +L  L+S+P V+YRTADDDI  SVP ++L
Sbjct: 183  KLAMMKCDFKVEFLVRDINEIKQYTDTSHLVVLLLLASSPRVWYRTADDDIEVSVPFDLL 242

Query: 819  DDEDPWIRTTDFTSSGAIGRCSSYRISVSPRFGSKLERALTYLREHRIPQYRSKDLIQVQ 998
            DD+DPWIRTTDFT SGAIGRC+SYR+S+ PR GSKL++A++YLRE R+ +   +  +++Q
Sbjct: 243  DDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGSKLKKAMSYLRERRVQETPLRKALRIQ 302

Query: 999  NEPDFGCGMPDPFFCIQHEKGISFATMFLVNAVVHKGIINQHQLSEEFYGLLSSQSDMVN 1178
            +EPDF   M DP F +  + GI F  MFL+N +VHKGI NQH +S+  + L  +Q   +N
Sbjct: 303  SEPDFAVPMSDPIFYVHGKHGIPFEIMFLLNVIVHKGIFNQHNISDGLFDLFRNQPREIN 362

Query: 1179 DISLRHIWSYKRPIFDAYRRLKLVQDWLLKNPKLLKRVKFSDDNAEVRRLVITPTKAYCL 1358
              +L+HI SYKRP+FDAY +LK VQ+WLL+NPKLLK  +  DD AEVRRLVITPT+AYCL
Sbjct: 363  LAALKHISSYKRPVFDAYAKLKNVQEWLLRNPKLLKIPRQLDDIAEVRRLVITPTRAYCL 422

Query: 1359 PPEVELSNRVLRKYKEVADRFLRVTFMDEGMQQLNANVLTYYVAPIVKDITLNSFPQKTT 1538
            PPEVELSNRVLRKYKEV+DRFLRVTFMDEGMQ +N NVLTYY APIVK++T NS  QKT 
Sbjct: 423  PPEVELSNRVLRKYKEVSDRFLRVTFMDEGMQTMNLNVLTYYPAPIVKELTSNSTSQKTK 482

Query: 1539 VFRRVRNILTDGFYLCGRKFSFLAFSSNQLRDRSAWFFANDRNTTVESIRRWMGKFSNRN 1718
            VF+RV+++LTDGFYLCG+++SFLAFSSNQLRDRSAWFFA D   TV  I++WMG+F+NRN
Sbjct: 483  VFKRVKSLLTDGFYLCGQRYSFLAFSSNQLRDRSAWFFAEDGKITVNGIKKWMGRFNNRN 542

Query: 1719 VAKCAARMGQCFSSTYATVNVPSEEVNAELEDIERNNYIFSDGIGKVVPELAKEVAEKLQ 1898
            +AKCAARMGQCFSSTYATV VP  EVN +LE+IERN Y+FSDGIG + P+LAKEVAEKL+
Sbjct: 543  IAKCAARMGQCFSSTYATVEVPLTEVNFDLEEIERNTYVFSDGIGMITPDLAKEVAEKLK 602

Query: 1899 LSENPPSAYQIRYAGCKGVIAVWPGHDDGIRLSLRPSMNKFESNHTVLEVVQWTRFQPGF 2078
            L  NPPSAYQIRYAGCKGV+A WP   DGIRLSLR SMNKF+S HT+LE+  WTRFQPGF
Sbjct: 603  LDINPPSAYQIRYAGCKGVVACWPPKGDGIRLSLRRSMNKFDSKHTILEICSWTRFQPGF 662

Query: 2079 LNRQIVTLLSSLGVIDDVFAKMQDSMIYKLNQMLVNVDVAFEILTTSCAEQGNTAAMMLS 2258
            LNRQIVTLLS+L V D++F KMQ++M++KLNQML + DVAF +LT SC EQGN  A+MLS
Sbjct: 663  LNRQIVTLLSTLNVRDEIFWKMQETMLFKLNQMLTDADVAFNVLTASCPEQGNVGAIMLS 722

Query: 2259 AGFKPQTEPHLKGMLSCIRSAQLGDLLAKARIFVPKGRWLMGCLDELGILEQGQCFIQAS 2438
            AGFKPQ+EPHL+GML+CIR+AQL  L  KARIFVP GRWLMGCLDELG+LEQGQCFIQ S
Sbjct: 723  AGFKPQSEPHLQGMLTCIRAAQLWGLREKARIFVPLGRWLMGCLDELGVLEQGQCFIQVS 782

Query: 2439 TPSLENCFSKHGSRFSRTEQNKKVILGMVAIAKNPCLHPGDIRILEAVDVPNLHHLVDCL 2618
            TPSLENCFSKHGSRFS T+ N +VI G V IAKNPCLHPGDIRILEAVDVP LHHL DCL
Sbjct: 783  TPSLENCFSKHGSRFSETKNNLEVIKGFVVIAKNPCLHPGDIRILEAVDVPGLHHLYDCL 842

Query: 2619 VFPQKGDRPHANEASGSDLDGDLYFVTWDEDLIPPGKRSWVPMDYTAAEARQLPHPVTHQ 2798
            VFPQKGDRPHANEASGSDLDGDLYFVTWDE+LIPP K+SW PM Y  A+ R LP  VT +
Sbjct: 843  VFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKKSWNPMQYDPAKPRTLPRDVTQK 902

Query: 2799 DIIDFFTKNMVNENLGVICNAHVVHADLSEYGALDEKCLQLAELAATAVDFPKTGKIVQM 2978
            DIIDFF++NMVNE+LG ICNAHVVHADLS+YGALDEKCL LAELAA AVDFPKTG IV M
Sbjct: 903  DIIDFFSRNMVNESLGAICNAHVVHADLSDYGALDEKCLSLAELAAIAVDFPKTGIIVTM 962

Query: 2979 PPALKPKMYPDFMGKDDSQSYKSEKILGRLYRKIKDASDEDF--PSELICTCADLPYDTD 3152
            P  LKPK+YPDFMGK++ QSYKS KI+GRLYR+IKD   +D    SEL    +++P+DTD
Sbjct: 963  PAHLKPKIYPDFMGKEEYQSYKSTKIMGRLYRQIKDEYSDDVSPSSELNIVSSNIPFDTD 1022

Query: 3153 LDISGASDYLAEAWQSKCAYDAQLNALLGQYRVSSEGEIVTGHIWSMPKYNSRKQGELKE 3332
            L++ GA+D+L +AW+ KC+YD QL  L+ QY+V  E E+VTG IWSMPK+NSRK+G+LKE
Sbjct: 1023 LEVPGAADFLDDAWEKKCSYDGQLKGLMIQYKVKREEEVVTGQIWSMPKHNSRKEGDLKE 1082

Query: 3333 RLKNAYFALHKEFRRVFETMSDD--QLADDKRSELYEQKASAWYQVTYHPRWVQKSIEMK 3506
            RLK++Y  L KEFR+VFE +  D  QL DD+++ LYE++ASAWYQ+TYHP+WV+KS +M 
Sbjct: 1083 RLKHSYTGLRKEFRQVFEKVDSDFEQLTDDEKNVLYEKRASAWYQITYHPKWVKKSQDMH 1142

Query: 3507 EP-DGDPLPARLSFAWIAADYLVRIKVKCXXXXXXXXXXXXXXXASYLFERI 3659
            +  +       LSFAWIAADYL RIK++C                 YL +RI
Sbjct: 1143 DQLEEVKNVVMLSFAWIAADYLARIKIRCRGVGDADSTKPINSLGKYLADRI 1194


>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1576 bits (4081), Expect = 0.0
 Identities = 768/1174 (65%), Positives = 937/1174 (79%), Gaps = 7/1174 (0%)
 Frame = +3

Query: 87   GPKKEEKELVITQVSFGGFDKSISAKELADFLEDNVGLIWRCRLKASWTPPESFPDFDVT 266
            G +  EKELV+TQ+S GGFD  ++AK L+++LE+ VG +WRCRLK S TPP+S+P +D+ 
Sbjct: 2    GSEGSEKELVVTQISGGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDID 61

Query: 267  CTPETPKKDDYMEVPPHAFVHFXXXXXXXXXXXXTGCSELVLHGKPLRMNSGSESSIRVN 446
               +  + ++Y +V PHAFVHF             G +EL+L  KPL ++ G E+  R+N
Sbjct: 62   AE-KVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 447  -RRRTTDPFKFLNACVEIGTLVSRDKFWASWRGPESGVNFLIDPFDGRCKILFSKNTAFS 623
             RRRTT PFKF +  VE+G LVS+D F   WRGP +GV+F +DPF+G CKILF+K+TAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGTCKILFTKDTAFS 180

Query: 624  FKGTRQVAMIKCDFKVEFTVRDINEVKLCTDQAAYTLLFQLSSAPWVYYRTADDDIFESV 803
            F+G  + A+IKC+FK+EF VR+INE+K C D  +  +L QL+S+P V+YRTADDDI ESV
Sbjct: 181  FRGEARHAIIKCNFKIEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 804  PCNVLDDEDPWIRTTDFTSSGAIGRCSSYRISVSPRFGSKLERALTYLREHRIPQYR--S 977
              ++LDD+D WIRTTD T SGAIGRC++YRIS+ PR G   E+A+ Y   HR+P     +
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 978  KDLIQVQNEPDFGCGMPDPFFCIQHEKGISFATMFLVNAVVHKGIINQHQLSEEFYGLLS 1157
            + +++V++EPDFG  M DPFFC Q+E GISF  MFLVNAV+HKGI+NQHQ++ EF+ LL 
Sbjct: 301  RKMLRVKDEPDFGVSMSDPFFCFQNE-GISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 1158 SQSDMVNDISLRHIWSYKRPIFDAYRRLKLVQDWLLKNPKLLKRVKFSDDNAEVRRLVIT 1337
            S+ + VN  +L+H++SYK P+ DA ++L  +Q WLLKNPKLL R    DD  EVRRLVIT
Sbjct: 360  SRQEEVNSAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLDRTGELDDIVEVRRLVIT 419

Query: 1338 PTKAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQQLNANVLTYYVAPIVKDITLN 1517
            PTKAYCLPP VELSNRVLR YK VADRFLRVTFMDEGM+ LN NVLTYY A IV++IT N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 1518 SFPQKTTVFRRVRNILTDGFYLCGRKFSFLAFSSNQLRDRSAWFFANDRNTTVESIRRWM 1697
            S PQ+T +F+RV++IL+ GF+LCGRK+SFLAFS+NQLRDRSAWFFA D    V  I  WM
Sbjct: 480  SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 1698 GKFSNRNVAKCAARMGQCFSSTYATVNVPSEEVNAELEDIERNNYIFSDGIGKVVPELAK 1877
            G+FSNRNVAKCAARMGQCFSSTYATV VPS EVN+EL DIERN Y+FSDGIG +  +LA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 1878 EVAEKLQLSENPPSAYQIRYAGCKGVIAVWPGHDDGIRLSLRPSMNKFESNHTVLEVVQW 2057
            EVAEKL LS NPPSAYQIRYAGCKGV+A WP  +DGIRLSLRPSM KF+SNHT+LE+  W
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 2058 TRFQPGFLNRQIVTLLSSLGVIDDVFAKMQDSMIYKLNQMLVNVDVAFEILTTSCAEQGN 2237
            TRFQPGFLNRQIVTLLSSL V D +F +MQ  MI  L++MLV+ DVAF+++T SCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 2238 TAAMMLSAGFKPQTEPHLKGMLSCIRSAQLGDLLAKARIFVPKGRWLMGCLDELGILEQG 2417
            TAA+MLSAGFKPQ+EPHL+GMLS IR++QLGDL  KARIFVP GRWLMGCLDELG LEQG
Sbjct: 720  TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 2418 QCFIQASTPSLENCFSKHGSRFSRTEQNKKVILGMVAIAKNPCLHPGDIRILEAVDVPNL 2597
            QCFIQ S+PSLENCF KHG +FS  +QN +V+ G+V IAKNPCLHPGD+RILEAVDVP+L
Sbjct: 780  QCFIQVSSPSLENCFVKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 2598 HHLVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDEDLIPPGKRSWVPMDYTAAEARQL 2777
             HL DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDE+LIPP K+SW+PM+Y  AE +QL
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 2778 PHPVTHQDIIDFFTKNMVNENLGVICNAHVVHADLSEYGALDEKCLQLAELAATAVDFPK 2957
               V H DIIDFF+KNMV E+LG ICNAHVVHADLSE+GALDEKCL+LAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 2958 TGKIVQMPPALKPKMYPDFMGKDDSQSYKSEKILGRLYRKIKDASDE--DFPSELICTCA 3131
            TGK+V MP  LKPKMYPDFMGK++ QSYKS+KILG+LYR++KD  D   +  + L     
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 3132 DLPYDTDLDISGASDYLAEAWQSKCAYDAQLNALLGQYRVSSEGEIVTGHIWSMPKYNSR 3311
            D+PYD+ L+I G++ ++ +AW SKC+YD QL+ LLGQY+V+ E E+VTGHIWSMPKY+++
Sbjct: 1020 DIPYDSTLEILGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 3312 KQGELKERLKNAYFALHKEFRRVFETMSD--DQLADDKRSELYEQKASAWYQVTYHPRWV 3485
            KQGELKERLK+AY  L KEFR VFE M    D L DD+++++YE+KASAWYQVTYHP WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139

Query: 3486 QKSIEMKEPDGDPLPARLSFAWIAADYLVRIKVK 3587
             +S+E++ PD       LSFAWIAADYL RIK++
Sbjct: 1140 ARSLELQLPDAVSNTVMLSFAWIAADYLARIKIR 1173


>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp.
            vesca]
          Length = 1197

 Score = 1575 bits (4079), Expect = 0.0
 Identities = 761/1194 (63%), Positives = 930/1194 (77%), Gaps = 5/1194 (0%)
 Frame = +3

Query: 93   KKEEKELVITQVSFGGFDKSISAKELADFLEDNVGLIWRCRLKASWTPPESFPDFDVTCT 272
            ++ E + V+TQVSFGGF   ++AKEL  +LED +GL++RCRLK SWTPPES P+F+++  
Sbjct: 4    EERENDTVVTQVSFGGFGSHVTAKELVSYLEDEIGLVFRCRLKTSWTPPESVPNFEISDA 63

Query: 273  PETPKKDDYMEVPPHAFVHFXXXXXXXXXXXXTGCSELVLHGKPLRMNSGSESSIRVN-R 449
             +    DDY +V PHAFVHF             G  +L  + + L+ + G E+   +N R
Sbjct: 64   ADIETTDDYRKVEPHAFVHFASPESVTAVMDAVGRCQLFFNNQALKASLGPENLFNMNKR 123

Query: 450  RRTTDPFKFLNACVEIGTLVSRDKFWASWRGPESGVNFLIDPFDGRCKILFSKNTAFSFK 629
            RRT  PFK  +  +EIG+LV  D+F+ +W+GP+ GV+F++DPFDG CK  F ++TAFSFK
Sbjct: 124  RRTKIPFKLADVRLEIGSLVRLDEFFVAWKGPDHGVDFVVDPFDGTCKFCFRRDTAFSFK 183

Query: 630  GTRQVAMIKCDFKVEFTVRDINEVKLCTDQAAYTLLFQLSSAPWVYYRTADDDIFESVPC 809
            G  + A+I CDFK EF VR+I E K  T+   + LL +L S+PWV YRTADDDI +SV  
Sbjct: 184  GLNKHAVITCDFKAEFQVREIGEFKHYTEPLYHVLLLRLVSSPWVSYRTADDDIDQSVLF 243

Query: 810  NVLDDEDPWIRTTDFTSSGAIGRCSSYRISVSPRFGSKLERALTYLREHRIPQYRSKDLI 989
            ++LDD+DPWIRTTDFT +GAIGRC+ YR+ + PR G+KL++A+ YL+E R+ +   K   
Sbjct: 244  DLLDDDDPWIRTTDFTPTGAIGRCNYYRVLIPPRHGAKLKKAMIYLKERRVQELFIKKPP 303

Query: 990  QVQNEPDFGCGMPDPFFCIQHEKGISFATMFLVNAVVHKGIINQHQLSEEFYGLLSSQSD 1169
            ++Q+EP FG  M D  F I ++K ISF  +FLVNAV+HKGI+NQHQLSE F+ LL +Q +
Sbjct: 304  RIQDEPGFGNPMSDALFSIHYQKNISFDILFLVNAVMHKGILNQHQLSESFFDLLRNQPE 363

Query: 1170 MVNDISLRHIWSYKRPIFDAYRRLKLVQDWLLKNPKLLKRVKFSDDNAEVRRLVITPTKA 1349
             +N  +L+H+ SYK P+FDA +RLKLVQ+WLL+NPKL+K  K  DD AEVRRLVITPTKA
Sbjct: 364  EINVAALKHLCSYKHPVFDASKRLKLVQEWLLRNPKLIKNPKRLDDIAEVRRLVITPTKA 423

Query: 1350 YCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQQLNANVLTYYVAPIVKDITLNSFPQ 1529
            YCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQ +N+NV+  YVAPIVK+IT N+FPQ
Sbjct: 424  YCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTMNSNVMNSYVAPIVKEITENTFPQ 483

Query: 1530 KTTVFRRVRNILTDGFYLCGRKFSFLAFSSNQLRDRSAWFFANDRNTTVESIRRWMGKFS 1709
            KT V+ R+R IL +GF+LCGRK+SFLAFSSNQLRDRSAWFFA D+  +++ I+ WMG+F+
Sbjct: 484  KTKVYVRIRAILMNGFHLCGRKYSFLAFSSNQLRDRSAWFFAEDKTISIQGIKNWMGRFT 543

Query: 1710 NRNVAKCAARMGQCFSSTYATVNVPSEEVNAELEDIERNNYIFSDGIGKVVPELAKEVAE 1889
            NRNVAKCAARMGQCFSSTYATV VPS +VN EL DIERN Y+FSDGIG++ P+LA EVAE
Sbjct: 544  NRNVAKCAARMGQCFSSTYATVEVPSTQVNHELPDIERNGYVFSDGIGRITPDLAMEVAE 603

Query: 1890 KLQLSENPPSAYQIRYAGCKGVIAVWPGHDDGIRLSLRPSMNKFESNHTVLEVVQWTRFQ 2069
            KL+L  +PPSAYQIRY GCKGV+A WP   DG RLSLR SMNKF S+HT LE+  WTR Q
Sbjct: 604  KLKLDRDPPSAYQIRYGGCKGVVACWPSTGDGFRLSLRRSMNKFASDHTTLEICSWTRLQ 663

Query: 2070 PGFLNRQIVTLLSSLGVIDDVFAKMQDSMIYKLNQMLVNVDVAFEILTTSCAEQGNTAAM 2249
            PGFLNRQI+TLLS+L V D++F  MQ++M+ KL QMLV+ DVAF++LT SCAEQGN+AA+
Sbjct: 664  PGFLNRQIITLLSALNVPDEIFWTMQETMVSKLKQMLVDTDVAFDVLTASCAEQGNSAAI 723

Query: 2250 MLSAGFKPQTEPHLKGMLSCIRSAQLGDLLAKARIFVPKGRWLMGCLDELGILEQGQCFI 2429
            MLSAGFKPQTEPHL+GML+CI++AQL  L  K RIFVP GRWLMGCLDELG+LEQGQCF+
Sbjct: 724  MLSAGFKPQTEPHLRGMLTCIQAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEQGQCFV 783

Query: 2430 QASTPSLENCFSKHGSRFSRTEQNKKVILGMVAIAKNPCLHPGDIRILEAVDVPNLHHLV 2609
            Q STPSLENCF+KHGSRF +T++N +VI G V +AKNPCLHPGDIRILEAVD P LHHL 
Sbjct: 784  QVSTPSLENCFAKHGSRFDQTDKNLQVIKGFVVVAKNPCLHPGDIRILEAVDAPGLHHLH 843

Query: 2610 DCLVFPQKGDRPHANEASGSDLDGDLYFVTWDEDLIPPGKRSWVPMDYTAAEARQLPHPV 2789
            DCLVFPQKG RPH +EASGSDLDGDLYFVTWDE+LIPP K+SW PM+Y  AEA+     V
Sbjct: 844  DCLVFPQKGHRPHTDEASGSDLDGDLYFVTWDENLIPPRKKSWQPMEYEPAEAKLSGRSV 903

Query: 2790 THQDIIDFFTKNMVNENLGVICNAHVVHADLSEYGALDEKCLQLAELAATAVDFPKTGKI 2969
            T QD+I+FF +NMVNENLG ICNAHVVH+D SEYGA DE CL+LAELAA AVDFPKTGKI
Sbjct: 904  TSQDLIEFFVRNMVNENLGAICNAHVVHSDRSEYGAFDENCLKLAELAAVAVDFPKTGKI 963

Query: 2970 VQMPPALKPKMYPDFMGKDDSQSYKSEKILGRLYRKIKDASDEDF--PSELICTCADLPY 3143
            V MPP LKPK+YPDFMGK D QSYKS KILGRLYRKI DA DED    SE     +D+ Y
Sbjct: 964  VTMPPHLKPKLYPDFMGKQDYQSYKSNKILGRLYRKICDAYDEDVANSSEQNHVPSDVKY 1023

Query: 3144 DTDLDISGASDYLAEAWQSKCAYDAQLNALLGQYRVSSEGEIVTGHIWSMPKYNSRKQGE 3323
            D DL++  A+D++A+AW+ KC+YD+QL  L+ QY++  E EIVTGH+WSMPKY SRKQGE
Sbjct: 1024 DMDLEVPKAADFIADAWERKCSYDSQLRGLMTQYKIMREEEIVTGHVWSMPKYTSRKQGE 1083

Query: 3324 LKERLKNAYFALHKEFRRVFETMSD--DQLADDKRSELYEQKASAWYQVTYHPRWVQKSI 3497
            L+ERLK++Y AL KEFR+ FE M    + L DD+++  YEQKASAWYQVTYHP WV+KS+
Sbjct: 1084 LQERLKHSYSALKKEFRQFFEKMDTGFESLIDDQKNSFYEQKASAWYQVTYHPDWVKKSL 1143

Query: 3498 EMKEPDGDPLPARLSFAWIAADYLVRIKVKCXXXXXXXXXXXXXXXASYLFERI 3659
            ++  PDG      LSFAWIAADYL RIK+K                  YL +RI
Sbjct: 1144 DLHGPDGPGDVVMLSFAWIAADYLARIKIKRREVSNIDPKKPINILTKYLADRI 1197


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score = 1575 bits (4079), Expect = 0.0
 Identities = 767/1174 (65%), Positives = 936/1174 (79%), Gaps = 7/1174 (0%)
 Frame = +3

Query: 87   GPKKEEKELVITQVSFGGFDKSISAKELADFLEDNVGLIWRCRLKASWTPPESFPDFDVT 266
            G +  EK+LV+TQ+S GGFD  ++AK L+++LE+ VG +WRCRLK S TPP+S+P FDV 
Sbjct: 2    GSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTFDVD 61

Query: 267  CTPETPKKDDYMEVPPHAFVHFXXXXXXXXXXXXTGCSELVLHGKPLRMNSGSESSIRVN 446
                  +  DY +V PHAFVHF             G +EL+L  KPL ++ G E+  R+N
Sbjct: 62   AE-RVQRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 447  -RRRTTDPFKFLNACVEIGTLVSRDKFWASWRGPESGVNFLIDPFDGRCKILFSKNTAFS 623
             RRRTT PFKF +  +E+G LVS+D F   WRGP +GV+FL+DPF+G CKILF+K+TAFS
Sbjct: 121  QRRRTTMPFKFSDVSIEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKDTAFS 180

Query: 624  FKGTRQVAMIKCDFKVEFTVRDINEVKLCTDQAAYTLLFQLSSAPWVYYRTADDDIFESV 803
            F+G  + A+IKC+FK+EF VR+INE+K C D  +  +L QL+S+P V+YRTADDDI ESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 804  PCNVLDDEDPWIRTTDFTSSGAIGRCSSYRISVSPRFGSKLERALTYLREHRIPQYR--S 977
              ++LDD+D WIRTTD T SGAIGRC++YRIS+ PR G   E+A+ Y   HR+P     +
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 978  KDLIQVQNEPDFGCGMPDPFFCIQHEKGISFATMFLVNAVVHKGIINQHQLSEEFYGLLS 1157
            + +++V++EPDFG  M DPFFC Q+E GISF  MFLVNAV+HKGI+NQHQ++ EF+ LL 
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQNE-GISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 1158 SQSDMVNDISLRHIWSYKRPIFDAYRRLKLVQDWLLKNPKLLKRVKFSDDNAEVRRLVIT 1337
            S  + VN  +L+H++SYK P+ DA ++L  ++ WLLKNPKLL+R    DD  EVRRLVIT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIRKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 1338 PTKAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQQLNANVLTYYVAPIVKDITLN 1517
            PTKAYCLPP VELSNRVLR YK VADRFLRVTFMDEGM+ LN NVLTYY A IV++IT N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 1518 SFPQKTTVFRRVRNILTDGFYLCGRKFSFLAFSSNQLRDRSAWFFANDRNTTVESIRRWM 1697
            S PQ+T +F+RV++IL+ GF+LCGRK+SFLAFS+NQLRDRSAWFFA D    V  I  WM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 1698 GKFSNRNVAKCAARMGQCFSSTYATVNVPSEEVNAELEDIERNNYIFSDGIGKVVPELAK 1877
            G+FSNRNVAKCAARMGQCFSSTYATV VPS EVN+EL DIERN Y+FSDGIG +  +LA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAV 599

Query: 1878 EVAEKLQLSENPPSAYQIRYAGCKGVIAVWPGHDDGIRLSLRPSMNKFESNHTVLEVVQW 2057
            EVAEKL LS NPPSAYQIRYAGCKGV+A WP  +DGIRLSLRPSM KF+SNHT+LE+  W
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 2058 TRFQPGFLNRQIVTLLSSLGVIDDVFAKMQDSMIYKLNQMLVNVDVAFEILTTSCAEQGN 2237
            TRFQPGFLNRQIVTLLSSL V D +F +MQ  MI  L++MLV+ DVAF+++T SCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 2238 TAAMMLSAGFKPQTEPHLKGMLSCIRSAQLGDLLAKARIFVPKGRWLMGCLDELGILEQG 2417
            TAA+MLSAGFKPQ+EPHL+GMLS IR++QLGDL  KARIFVP GRWLMGCLDELG LEQG
Sbjct: 720  TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 2418 QCFIQASTPSLENCFSKHGSRFSRTEQNKKVILGMVAIAKNPCLHPGDIRILEAVDVPNL 2597
            QCFIQ S+PSLENCF KHG +FS  ++N +V+ G+V IAKNPCLHPGD+RILEAVDVP L
Sbjct: 780  QCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839

Query: 2598 HHLVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDEDLIPPGKRSWVPMDYTAAEARQL 2777
            HHL DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDE+LIPP K+SW+PM+Y  AE +Q+
Sbjct: 840  HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQM 899

Query: 2778 PHPVTHQDIIDFFTKNMVNENLGVICNAHVVHADLSEYGALDEKCLQLAELAATAVDFPK 2957
               V H DIIDFF+KNMV E+LG ICNAHVVHADLSE+GALDEKCL+LAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 2958 TGKIVQMPPALKPKMYPDFMGKDDSQSYKSEKILGRLYRKIKDASDE--DFPSELICTCA 3131
            TGK+V MP  LKPKMYPDFMGK++ QSYKS+KILG+LYR++KD  D   +  + L     
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPN 1019

Query: 3132 DLPYDTDLDISGASDYLAEAWQSKCAYDAQLNALLGQYRVSSEGEIVTGHIWSMPKYNSR 3311
            D+PYD+ L+I G++ ++ +AW SKC+YD QL+ LLGQY+V+ E E+VTGHIWSMPKY+++
Sbjct: 1020 DIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 3312 KQGELKERLKNAYFALHKEFRRVFETMSD--DQLADDKRSELYEQKASAWYQVTYHPRWV 3485
            KQGELKERLK+AY  L KEFR VFE M    D L DD+++++YE+KASAWYQVTY+P WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139

Query: 3486 QKSIEMKEPDGDPLPARLSFAWIAADYLVRIKVK 3587
             +S+E++ PD       LSFAWIAADYL RIK++
Sbjct: 1140 ARSLELQLPDAVSSTVMLSFAWIAADYLARIKIR 1173


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1575 bits (4077), Expect = 0.0
 Identities = 771/1178 (65%), Positives = 938/1178 (79%), Gaps = 7/1178 (0%)
 Frame = +3

Query: 75   MGSFGPKKEEKELVITQVSFGGFDKSISAKELADFLEDNVGLIWRCRLKASWTPPESFPD 254
            MGS G    EKELV+TQ+S GGFD  ++AK L+++LE+ VG +WRCRLK S TPP+S+P 
Sbjct: 1    MGSEGC---EKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPT 57

Query: 255  FDVTCTPETPKKDDYMEVPPHAFVHFXXXXXXXXXXXXTGCSELVLHGKPLRMNSGSESS 434
            +D+    +  + ++Y +V PHAFVHF             G +EL+L  KPL ++ G E+ 
Sbjct: 58   YDIDAE-KVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENP 116

Query: 435  IRVN-RRRTTDPFKFLNACVEIGTLVSRDKFWASWRGPESGVNFLIDPFDGRCKILFSKN 611
             R+N RRRTT PFKF +  VE+G LVS+D F   WRGP +GV+FL+DPF+G CKILF+K+
Sbjct: 117  YRLNQRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKD 176

Query: 612  TAFSFKGTRQVAMIKCDFKVEFTVRDINEVKLCTDQAAYTLLFQLSSAPWVYYRTADDDI 791
            TAFSF+G  + A+IKC+FK+EF VR+INE+K C D  +  +LFQL+S+P V+YRTADDDI
Sbjct: 177  TAFSFRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDI 236

Query: 792  FESVPCNVLDDEDPWIRTTDFTSSGAIGRCSSYRISVSPRFGSKLERALTYLREHRIPQY 971
             ESV  ++LDD+D WIRTTD T SGAIGRC++YRIS+ PR G   E+A+ Y    R+P  
Sbjct: 237  EESVAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMV 296

Query: 972  R--SKDLIQVQNEPDFGCGMPDPFFCIQHEKGISFATMFLVNAVVHKGIINQHQLSEEFY 1145
               ++ +++V++EPDFG  M DPFFC Q+E GISF  +FLVNAV+HKGI+NQHQ++ EF+
Sbjct: 297  EMCNRKMLRVKDEPDFGVSMSDPFFCFQNE-GISFRVLFLVNAVLHKGIVNQHQMANEFF 355

Query: 1146 GLLSSQSDMVNDISLRHIWSYKRPIFDAYRRLKLVQDWLLKNPKLLKRVKFSDDNAEVRR 1325
             LL S  + VN  +L+H++SYK P+ DA ++L  +Q WLLKNPKLL R    DD  EVRR
Sbjct: 356  YLLRSHQEEVNSAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLDRTGELDDIVEVRR 415

Query: 1326 LVITPTKAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQQLNANVLTYYVAPIVKD 1505
            LVITPTKAYCLPP VELSNRVLR YK VADRFLRVTFMDEGM+ LN NVLTYY A IV++
Sbjct: 416  LVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVRE 475

Query: 1506 ITLNSFPQKTTVFRRVRNILTDGFYLCGRKFSFLAFSSNQLRDRSAWFFANDRNTTVESI 1685
            IT NS PQ+T +F+RV++IL+ GF+LCGRK+SFLAFS+NQLRDRSAWFFA D    V  I
Sbjct: 476  ITSNSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGI 535

Query: 1686 RRWMGKFSNRNVAKCAARMGQCFSSTYATVNVPSEEVNAELEDIERNNYIFSDGIGKVVP 1865
              WMG+FSNRNVAKCAARMGQCFSSTYATV VPS EVN+EL DIERN Y+FSDGIG +  
Sbjct: 536  ISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISA 595

Query: 1866 ELAKEVAEKLQLSENPPSAYQIRYAGCKGVIAVWPGHDDGIRLSLRPSMNKFESNHTVLE 2045
            +LA EVAEKL LS NPPSAYQIRYAGCKGV+A WP  +DGIRLSLRPSM KF+SNHT+LE
Sbjct: 596  DLAIEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILE 655

Query: 2046 VVQWTRFQPGFLNRQIVTLLSSLGVIDDVFAKMQDSMIYKLNQMLVNVDVAFEILTTSCA 2225
            +  WTRFQPGFLNRQIVTLLSSL V D +F +MQ  MI  L++MLV+ DVAF+++T SCA
Sbjct: 656  ICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCA 715

Query: 2226 EQGNTAAMMLSAGFKPQTEPHLKGMLSCIRSAQLGDLLAKARIFVPKGRWLMGCLDELGI 2405
            E GNTAA+MLSAGFKPQ+EPHL+GMLS IR++QLGDL  KARIFVP GRWLMGCLDELG 
Sbjct: 716  EAGNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGE 775

Query: 2406 LEQGQCFIQASTPSLENCFSKHGSRFSRTEQNKKVILGMVAIAKNPCLHPGDIRILEAVD 2585
            LEQGQCFIQ S+PSLENCF KHG +FS  ++N +V+ G+V IAKNPCLHPGD+RILEAVD
Sbjct: 776  LEQGQCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVD 835

Query: 2586 VPNLHHLVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDEDLIPPGKRSWVPMDYTAAE 2765
            VP+L HL DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDE+LIPP K+SW+PM+Y  AE
Sbjct: 836  VPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAE 895

Query: 2766 ARQLPHPVTHQDIIDFFTKNMVNENLGVICNAHVVHADLSEYGALDEKCLQLAELAATAV 2945
             +QL   V H DIIDFF+KNMV E+LG ICNAHVVHADLSE+GALDEKCL+LAELAA AV
Sbjct: 896  VKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAV 955

Query: 2946 DFPKTGKIVQMPPALKPKMYPDFMGKDDSQSYKSEKILGRLYRKIKDASDE--DFPSELI 3119
            DFPKTGK+V MP  LKPKMYPDFMGK++ QSYKS+KILG+LYR++KD  D   +  + L 
Sbjct: 956  DFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLE 1015

Query: 3120 CTCADLPYDTDLDISGASDYLAEAWQSKCAYDAQLNALLGQYRVSSEGEIVTGHIWSMPK 3299
                D+PYDT L+I G++ ++ +AW SKC+YD QLN LLGQY+V+ E E+VTG+IWSMPK
Sbjct: 1016 VVPKDIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGYIWSMPK 1075

Query: 3300 YNSRKQGELKERLKNAYFALHKEFRRVFETMSD--DQLADDKRSELYEQKASAWYQVTYH 3473
            YN++KQGELKERLK+AY  L KEFR VFE M    D L DD+++++YE+KASAWYQVTYH
Sbjct: 1076 YNAKKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYH 1135

Query: 3474 PRWVQKSIEMKEPDGDPLPARLSFAWIAADYLVRIKVK 3587
            P WV +S+E++  D       LSFAWIAADYL RIK++
Sbjct: 1136 PHWVARSLELQLADAVSNTVMLSFAWIAADYLARIKIR 1173


>ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor]
            gi|241929916|gb|EES03061.1| hypothetical protein
            SORBIDRAFT_03g022880 [Sorghum bicolor]
          Length = 1207

 Score = 1573 bits (4072), Expect = 0.0
 Identities = 758/1176 (64%), Positives = 934/1176 (79%), Gaps = 9/1176 (0%)
 Frame = +3

Query: 90   PKKEEKELVITQVSFGGFDKSISAKELADFLEDNVGLIWRCRLKASWTPPESFPDFDV-T 266
            P     +LV TQVS GGFD ++ A +LADFLE   GL+WRCR+K SWTPP+++PDF + T
Sbjct: 12   PAPRAGDLVTTQVSLGGFDATVKALDLADFLELKAGLVWRCRVKTSWTPPDAYPDFLLPT 71

Query: 267  CTPETPKKDDYMEVPPHAFVHFXXXXXXXXXXXXTGCSELVLHGKPLRMNSGSESSIRVN 446
             T    +   Y  VPPHAFVHF             G SEL+L GKPLR  S  ESS+R +
Sbjct: 72   VTSAAAQPPQYDRVPPHAFVHFARPEGARAAADAAGRSELILSGKPLRAASAQESSLRAS 131

Query: 447  RRRTTDPFKFLNACVEIGTLVSRDKFWASWRGPESGVNFLIDPFDGRCKILFSKNTAFSF 626
            RRR+  PF+F  + +E+G L ++D F A+WRGP SG+ F +DPFDG C+++F+++TAF  
Sbjct: 132  RRRSVSPFRFPGSRLEVGDLPAKDAFLAAWRGPASGLEFSVDPFDGSCRLIFARDTAFKV 191

Query: 627  KGTRQVAMIKCDFKVEFTVRDINEVKLCTDQAAYTLLFQLSSAPWVYYRTADDDIFESVP 806
            +  R+  +++CD K+EF VRD+ EV++   +   +LL +LS+AP VYYRTADDDI ESVP
Sbjct: 192  REFRESVVMRCDVKLEFPVRDVAEVRVF--RLDCSLLIRLSAAPLVYYRTADDDIHESVP 249

Query: 807  CNVLDDEDPWIRTTDFTSSGAIGRCSSYRISVSPRFGSKLERALTYLREHRIP------Q 968
             ++LDD+DPWIRTTD T SGAIGRC +YRI+ SPRF  K+ERAL Y+R+ R+P       
Sbjct: 250  FDLLDDDDPWIRTTDITPSGAIGRCGAYRITFSPRFWPKMERALAYMRDRRVPIVDCGGG 309

Query: 969  YRSKDLIQVQNEPDFGCGMPDPFFCIQHEKGISFATMFLVNAVVHKGIINQHQLSEEFYG 1148
            + ++  + V++EP+FG  M D FFC+QH +G+ F  +FLVNA+VHKG+INQH L+ EF+G
Sbjct: 310  WGARRGLTVRDEPEFGERMQDLFFCVQHSEGLKFPVLFLVNALVHKGVINQHHLTPEFFG 369

Query: 1149 LLSSQSDMVNDISLRHIWSYKRPIFDAYRRLKLVQDWLLKNPKLLKRVKFSDDNAEVRRL 1328
            LL  + D VN  +LR  W  K P+FDA  RLK +QD + + PKLL+  K  DDN+EVRRL
Sbjct: 370  LLQRKEDDVNVAALREFWGDKFPVFDACGRLKNLQDRVARYPKLLRN-KIGDDNSEVRRL 428

Query: 1329 VITPTKAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQQLNANVLTYYVAPIVKDI 1508
            V+TPTKAYCLPPEVE SNRV+R Y+EV DRFLRVTFMDEGMQ LN+NVL +  A IVKD+
Sbjct: 429  VVTPTKAYCLPPEVERSNRVIRHYREVTDRFLRVTFMDEGMQLLNSNVLNFSAAQIVKDL 488

Query: 1509 TLNSFPQKTTVFRRVRNILTDGFYLCGRKFSFLAFSSNQLRDRSAWFFANDRNTTVESIR 1688
              NSF  KTTV++R++  LT+GF++CGRK+SFLAFSSNQLRDRSAWFFA DR  TVE+IR
Sbjct: 489  MSNSFLHKTTVYKRIKTFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAEDRMRTVETIR 548

Query: 1689 RWMGKFSNRNVAKCAARMGQCFSSTYATVNVPSEEVNAELEDIERNNYIFSDGIGKVVPE 1868
            +WMG+F+++NVAK AARMGQCFSSTYATV +   EVN  LE++ERN YIFSDGIGK+  +
Sbjct: 549  KWMGRFTSKNVAKHAARMGQCFSSTYATVVMQPHEVNECLEEVERNGYIFSDGIGKITCD 608

Query: 1869 LAKEVAEKLQLSENPPSAYQIRYAGCKGVIAVWPGHDDGIRLSLRPSMNKFESNHTVLEV 2048
            LA EVA+KL+L++NPPSAYQIRYAG KGVIAVW G +DGIRLSLRPSM+KFESNH VLEV
Sbjct: 609  LALEVAQKLRLTDNPPSAYQIRYAGFKGVIAVWEGENDGIRLSLRPSMHKFESNHNVLEV 668

Query: 2049 VQWTRFQPGFLNRQIVTLLSSLGVIDDVFAKMQDSMIYKLNQMLVNVDVAFEILTTSCAE 2228
            V WT+FQPGFLNRQI+TLLSSL V D +F++MQ++M+  LN +L + DVAF+I+TTSCAE
Sbjct: 669  VSWTKFQPGFLNRQIITLLSSLNVPDAIFSQMQEAMLSNLNNILSDTDVAFDIVTTSCAE 728

Query: 2229 QGNTAAMMLSAGFKPQTEPHLKGMLSCIRSAQLGDLLAKARIFVPKGRWLMGCLDELGIL 2408
            QGNTAA+MLSAG  P TEPHLK ML  IRS+QL  LL K RIFVPKGRWLMGCLDELGIL
Sbjct: 729  QGNTAALMLSAGISPGTEPHLKAMLLAIRSSQLLGLLEKTRIFVPKGRWLMGCLDELGIL 788

Query: 2409 EQGQCFIQASTPSLENCFSKHGSRFSRTEQNKKVILGMVAIAKNPCLHPGDIRILEAVDV 2588
            EQGQCFI+AS+PSL NC  KHG RFS   +N + I+G + +AKNPCLHPGD+RILEAVDV
Sbjct: 789  EQGQCFIRASSPSLNNCLVKHGPRFSSANKNAETIVGTIVMAKNPCLHPGDVRILEAVDV 848

Query: 2589 PNLHHLVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDEDLIPPGKRSWVPMDYTAAEA 2768
            P LHHLVDCLVFP+KG+RPHANEASGSDLDGDLYFVTWDE+LIPPGK+SW PMDY+  EA
Sbjct: 849  PELHHLVDCLVFPKKGERPHANEASGSDLDGDLYFVTWDENLIPPGKKSWNPMDYSPTEA 908

Query: 2769 RQLPHPVTHQDIIDFFTKNMVNENLGVICNAHVVHADLSEYGALDEKCLQLAELAATAVD 2948
            +QLP  V+  DI+DFF KNMVNE LG I NAHVVHAD+SEYGA+DEKC+QLAELAATAVD
Sbjct: 909  KQLPRAVSPHDIVDFFLKNMVNEKLGPISNAHVVHADMSEYGAMDEKCIQLAELAATAVD 968

Query: 2949 FPKTGKIVQMPPALKPKMYPDFMGKDDSQSYKSEKILGRLYRKIKDASDEDFPSELICTC 3128
            FPKTGKIV MPP+L+PK+YPDFMGK+D+ SYKSEKILGRLYR I++AS  D   E  CT 
Sbjct: 969  FPKTGKIVSMPPSLRPKLYPDFMGKEDAISYKSEKILGRLYRSIQEASSGDLVPEETCTL 1028

Query: 3129 ADLPYDTDLDISGASDYLAEAWQSKCAYDAQLNALLGQYRVSSEGEIVTGHIWSMPKYNS 3308
             DLPYD D+++ GA+D+L+ AW+ KC+Y+ QLNALL QY V +E E+VT HIWS+PKY+S
Sbjct: 1029 NDLPYDADMEVPGATDFLSSAWECKCSYETQLNALLNQYGVRTEAELVTEHIWSLPKYSS 1088

Query: 3309 RKQGELKERLKNAYFALHKEFRRVFETMSDDQ--LADDKRSELYEQKASAWYQVTYHPRW 3482
            RKQG++KERLKNAY ALHK+FR +FE+   DQ  ++DD++   YE KASAWYQVTYHP+W
Sbjct: 1089 RKQGDIKERLKNAYSALHKDFRSIFESFVTDQTEISDDEKIRFYEMKASAWYQVTYHPKW 1148

Query: 3483 VQKSIEMKEPDGDPLPARLSFAWIAADYLVRIKVKC 3590
            VQKS EM +PD + +PARLSFAWI  ++L RIK++C
Sbjct: 1149 VQKSREMLKPDFEDMPARLSFAWIGVEHLARIKIRC 1184


>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score = 1572 bits (4071), Expect = 0.0
 Identities = 766/1174 (65%), Positives = 934/1174 (79%), Gaps = 7/1174 (0%)
 Frame = +3

Query: 87   GPKKEEKELVITQVSFGGFDKSISAKELADFLEDNVGLIWRCRLKASWTPPESFPDFDVT 266
            G +  EKELV+TQ+S GGFD  ++AK L+++LE+ VG +WRCRLK S TPP+S+P +D+ 
Sbjct: 2    GSEGSEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDID 61

Query: 267  CTPETPKKDDYMEVPPHAFVHFXXXXXXXXXXXXTGCSELVLHGKPLRMNSGSESSIRVN 446
                  + ++Y +V PHAFVHF             G +ELVL  KPL ++ G E+  R+N
Sbjct: 62   AE-RVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELVLGKKPLIVSLGPENPYRLN 120

Query: 447  -RRRTTDPFKFLNACVEIGTLVSRDKFWASWRGPESGVNFLIDPFDGRCKILFSKNTAFS 623
             RRRTT PFKF +  VE+G LVS+  F   WRGP +GV+FL+DPF+G CKILF+K+T FS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKHDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTVFS 180

Query: 624  FKGTRQVAMIKCDFKVEFTVRDINEVKLCTDQAAYTLLFQLSSAPWVYYRTADDDIFESV 803
            F+G  + A+IKC+FK+EF VR+INE+K C D  +  +L QL+S+P V+YRTADDDI ESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFMSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 804  PCNVLDDEDPWIRTTDFTSSGAIGRCSSYRISVSPRFGSKLERALTYLREHRIPQYR--S 977
              ++LDD+D WIRTTD T SGAIGRC++YRIS+ PR G   E+A+ Y   HR+P     +
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 978  KDLIQVQNEPDFGCGMPDPFFCIQHEKGISFATMFLVNAVVHKGIINQHQLSEEFYGLLS 1157
            + +++V++EPDFG  M DPFFC Q+E GISF  +FL NAV+HKGI+NQHQ+  EF+ LL 
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQNE-GISFKVLFLANAVLHKGIVNQHQMINEFFYLLR 359

Query: 1158 SQSDMVNDISLRHIWSYKRPIFDAYRRLKLVQDWLLKNPKLLKRVKFSDDNAEVRRLVIT 1337
            S  + VN  +L+H++SYK P+ DA ++L  +Q WLLKNPKLL+R    DD  EVRRLVIT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 1338 PTKAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQQLNANVLTYYVAPIVKDITLN 1517
            PTKAYCLPP VELSNRVLR YK VADRFLRVTFMDEGM+ LN NVLTYY A IV++IT N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 1518 SFPQKTTVFRRVRNILTDGFYLCGRKFSFLAFSSNQLRDRSAWFFANDRNTTVESIRRWM 1697
            S PQ+T +F+RV++IL+ GF+LCGRK+SFLAFS+NQLRDRSAWFFA D    V  I  WM
Sbjct: 480  SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 1698 GKFSNRNVAKCAARMGQCFSSTYATVNVPSEEVNAELEDIERNNYIFSDGIGKVVPELAK 1877
            G+FSNRNVAKCAARMGQCFSSTYATV VPS EVN+EL DIERN Y+FSDGIG +  +LA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 1878 EVAEKLQLSENPPSAYQIRYAGCKGVIAVWPGHDDGIRLSLRPSMNKFESNHTVLEVVQW 2057
            EVAEKL LS NPP+AYQIRYAGCKGV+A WP  +DGIRLSLRPSM KF+SNHT+LE+  W
Sbjct: 600  EVAEKLHLSVNPPAAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 2058 TRFQPGFLNRQIVTLLSSLGVIDDVFAKMQDSMIYKLNQMLVNVDVAFEILTTSCAEQGN 2237
            TRFQPGFLNRQIVTLLSSL V D +F +MQ  MI  L++MLV+ DVAF+++T SCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 2238 TAAMMLSAGFKPQTEPHLKGMLSCIRSAQLGDLLAKARIFVPKGRWLMGCLDELGILEQG 2417
            TAA+MLSAGFKPQ+EPHL+GMLS IR++QLGDL  KARIFVP GRWLMGCLDELG LEQG
Sbjct: 720  TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 2418 QCFIQASTPSLENCFSKHGSRFSRTEQNKKVILGMVAIAKNPCLHPGDIRILEAVDVPNL 2597
            QCFIQ S+PSLENCF KHGS+FS  ++N +V+ G+V IAKNPCLHPGD+RILEAVDVP+L
Sbjct: 780  QCFIQVSSPSLENCFVKHGSKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 2598 HHLVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDEDLIPPGKRSWVPMDYTAAEARQL 2777
             HL DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDE++IPP K+SW+PM+Y  AE +QL
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENIIPPSKKSWIPMNYEPAEVKQL 899

Query: 2778 PHPVTHQDIIDFFTKNMVNENLGVICNAHVVHADLSEYGALDEKCLQLAELAATAVDFPK 2957
               V H DIIDFF+KNMV E+LG ICNAHVVHADLSE+GALDEKCL+LAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 2958 TGKIVQMPPALKPKMYPDFMGKDDSQSYKSEKILGRLYRKIKDASDE--DFPSELICTCA 3131
            TGK+V MP  LKPKMYPDFMGK++ QSYKS+KILG+LYR++KD  D   +  + L     
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 3132 DLPYDTDLDISGASDYLAEAWQSKCAYDAQLNALLGQYRVSSEGEIVTGHIWSMPKYNSR 3311
            D+PYDT L+I G++ ++ +AW SKC+YD QLN LLGQY+V+ E E+VTGHIWSMPKY+++
Sbjct: 1020 DIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 3312 KQGELKERLKNAYFALHKEFRRVFETMSD--DQLADDKRSELYEQKASAWYQVTYHPRWV 3485
            KQGELKERLK+AY  L KEFR VFE M    D L DD+++++YE+KASAWYQVTYHP WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139

Query: 3486 QKSIEMKEPDGDPLPARLSFAWIAADYLVRIKVK 3587
             +S+E++ PD       LSFAWIAADYL RIK++
Sbjct: 1140 ARSLELQIPDAVSSTVMLSFAWIAADYLARIKIR 1173


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score = 1564 bits (4049), Expect = 0.0
 Identities = 764/1174 (65%), Positives = 930/1174 (79%), Gaps = 7/1174 (0%)
 Frame = +3

Query: 87   GPKKEEKELVITQVSFGGFDKSISAKELADFLEDNVGLIWRCRLKASWTPPESFPDFDVT 266
            G +  EK+LV+TQ+S GGFD  ++AK L+++LE+ VG +WRCRLK S TPP+S+P +DV 
Sbjct: 2    GSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDVD 61

Query: 267  CTPETPKKDDYMEVPPHAFVHFXXXXXXXXXXXXTGCSELVLHGKPLRMNSGSESSIRVN 446
                  +  DY +V PHAFVHF             G + L+L  KPL ++ G E+  R+N
Sbjct: 62   AA-RVHRMKDYEKVVPHAFVHFASSESAKYALAAAGGNGLILGKKPLIVSLGPENPYRLN 120

Query: 447  -RRRTTDPFKFLNACVEIGTLVSRDKFWASWRGPESGVNFLIDPFDGRCKILFSKNTAFS 623
             RRRTT PFKF +  VE+G LVS+D F   WRGP +GV+F +DPF+G CKILF+K+TAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACKILFTKDTAFS 180

Query: 624  FKGTRQVAMIKCDFKVEFTVRDINEVKLCTDQAAYTLLFQLSSAPWVYYRTADDDIFESV 803
            F+G  + A+IKC+FK+EF VR+INE+K   D  +  +L QL+S+P V+YRTADDDI ESV
Sbjct: 181  FRGEAKHAIIKCNFKIEFMVREINEIKKFKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 804  PCNVLDDEDPWIRTTDFTSSGAIGRCSSYRISVSPRFGSKLERALTYLREHRIPQYR--S 977
              ++LDD+D WIRTTD T SGAIGRC++YRIS+ PR G   E+A+ Y   HR+P     +
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 978  KDLIQVQNEPDFGCGMPDPFFCIQHEKGISFATMFLVNAVVHKGIINQHQLSEEFYGLLS 1157
            + +++V++EPDFG  M DPFFC Q+E GISF  MFLVNAV+HKGI+NQHQ++ EF+ LL 
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQNE-GISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 1158 SQSDMVNDISLRHIWSYKRPIFDAYRRLKLVQDWLLKNPKLLKRVKFSDDNAEVRRLVIT 1337
            S  + VN  +L+H++SYK P+ DA ++L  +Q WLLKNPKLL+R    DD  EVRRLVIT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 1338 PTKAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQQLNANVLTYYVAPIVKDITLN 1517
            PTKAYCLPP VELSNRVLR YK VADRFLRVTFMDEGM+ LN NVLTYY A IV++IT N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 1518 SFPQKTTVFRRVRNILTDGFYLCGRKFSFLAFSSNQLRDRSAWFFANDRNTTVESIRRWM 1697
            S PQ+T +F+RV++IL+ GF+LCGRK+SFLAFS+NQLRDRSAWFFA D    V  I  WM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 1698 GKFSNRNVAKCAARMGQCFSSTYATVNVPSEEVNAELEDIERNNYIFSDGIGKVVPELAK 1877
            G+FSNRNVAKCAARMGQCFSSTYATV VPS EVN+EL DIERN Y+FSDGIG +  +LA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAL 599

Query: 1878 EVAEKLQLSENPPSAYQIRYAGCKGVIAVWPGHDDGIRLSLRPSMNKFESNHTVLEVVQW 2057
            EVAEKL LS NPPSAYQIRYAGCKGV+A WP  +DGI LSLRPSM KF+SNHT+LE+  W
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSW 659

Query: 2058 TRFQPGFLNRQIVTLLSSLGVIDDVFAKMQDSMIYKLNQMLVNVDVAFEILTTSCAEQGN 2237
            TRFQPGFLNRQIVTLLSSL V D +F +MQ  MI  LN+MLV+ DVAF+++T SCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLNKMLVDSDVAFDVITASCAEAGN 719

Query: 2238 TAAMMLSAGFKPQTEPHLKGMLSCIRSAQLGDLLAKARIFVPKGRWLMGCLDELGILEQG 2417
            TAA+MLSAGFKPQ+EPHL+GMLS IR++QLGDL  KARIFVP GRWLMGCLDELG LEQG
Sbjct: 720  TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 2418 QCFIQASTPSLENCFSKHGSRFSRTEQNKKVILGMVAIAKNPCLHPGDIRILEAVDVPNL 2597
            QCFIQ S+PSLENCF KHG +FS  ++N +V+ G+V IAKNPCLHPGD+RILEAVDVP L
Sbjct: 780  QCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839

Query: 2598 HHLVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDEDLIPPGKRSWVPMDYTAAEARQL 2777
            HHL DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDE+LIPP K+SW+PM+Y  AE +QL
Sbjct: 840  HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 2778 PHPVTHQDIIDFFTKNMVNENLGVICNAHVVHADLSEYGALDEKCLQLAELAATAVDFPK 2957
               V H DIIDFF+KNMV E+LG ICNAHVVHADLSE+GALDEKCL+LAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 2958 TGKIVQMPPALKPKMYPDFMGKDDSQSYKSEKILGRLYRKIKDASDE--DFPSELICTCA 3131
            TGK+V MP  LKPKMYPDFMGK++ QSYKS+KILG+LYR++KD  D   +  + L     
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPN 1019

Query: 3132 DLPYDTDLDISGASDYLAEAWQSKCAYDAQLNALLGQYRVSSEGEIVTGHIWSMPKYNSR 3311
            D+PYD+ L+I G++ ++ +AW  KC+YD QL+ LLGQY+V+ E E+VTGHIWSMPKY+++
Sbjct: 1020 DIPYDSSLEIPGSTVFMGDAWNCKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 3312 KQGELKERLKNAYFALHKEFRRVFETMSD--DQLADDKRSELYEQKASAWYQVTYHPRWV 3485
            KQGELKERLK+AY  L KEFR VFE M    D L DD+++++YE+KASAWYQVTY+P WV
Sbjct: 1080 KQGELKERLKHAYNMLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139

Query: 3486 QKSIEMKEPDGDPLPARLSFAWIAADYLVRIKVK 3587
             +S+E++ PD       LSFAWIAADYL RI ++
Sbjct: 1140 ARSLELQLPDAVSSTVMLSFAWIAADYLARINIR 1173


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1564 bits (4049), Expect = 0.0
 Identities = 765/1174 (65%), Positives = 934/1174 (79%), Gaps = 7/1174 (0%)
 Frame = +3

Query: 87   GPKKEEKELVITQVSFGGFDKSISAKELADFLEDNVGLIWRCRLKASWTPPESFPDFDVT 266
            G +  EK+LV+TQ+S GGFD  ++AK L+++LE+ VG +WRCRLK S TPP+S+P +D+ 
Sbjct: 2    GSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDID 61

Query: 267  CTPETPKKDDYMEVPPHAFVHFXXXXXXXXXXXXTGCSELVLHGKPLRMNSGSESSIRVN 446
                  +  DY +V PHAFVHF             G +EL+L  KPL ++ G E+  R+N
Sbjct: 62   AE-RVHRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 447  -RRRTTDPFKFLNACVEIGTLVSRDKFWASWRGPESGVNFLIDPFDGRCKILFSKNTAFS 623
             RRRTT PFKF +  VE+G LVS+D F   WRGP +GV+FL+DPF+G CKILF+K+TAFS
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFS 180

Query: 624  FKGTRQVAMIKCDFKVEFTVRDINEVKLCTDQAAYTLLFQLSSAPWVYYRTADDDIFESV 803
            F+G  + A+IKC+FK+EF VR+INE+K C D  +  +LFQL+S+P V+YRTADDDI ESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESV 240

Query: 804  PCNVLDDEDPWIRTTDFTSSGAIGRCSSYRISVSPRFGSKLERALTYLREHRIPQYR--S 977
              ++LDD+D WIRTTD T SGAIGRC++YRIS+ PR G   E+A+ Y    R+P     +
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCN 300

Query: 978  KDLIQVQNEPDFGCGMPDPFFCIQHEKGISFATMFLVNAVVHKGIINQHQLSEEFYGLLS 1157
            + +++V++EPDFG  M DPFFC Q+E GISF  MFLVNAV+HKGI+NQHQ++ EF+ LL 
Sbjct: 301  RKMLRVKDEPDFGVSMSDPFFCFQNE-GISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 1158 SQSDMVNDISLRHIWSYKRPIFDAYRRLKLVQDWLLKNPKLLKRVKFSDDNAEVRRLVIT 1337
            S+ + VN  +L+H++SYK P+ DA ++L  +Q WLLKNPKLL+R    DD  EVRRLVIT
Sbjct: 360  SRQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 1338 PTKAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQQLNANVLTYYVAPIVKDITLN 1517
            PTKAYCLPP VELSNRVLR YK VADRFLRVTFMDEGM+ LN NVLTYY A IV++IT N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 1518 SFPQKTTVFRRVRNILTDGFYLCGRKFSFLAFSSNQLRDRSAWFFANDRNTTVESIRRWM 1697
            S PQ+T +F+RV++IL+ GF+LCGRK+SFLAFS+NQLRDRSAWFFA D    V  I  WM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 1698 GKFSNRNVAKCAARMGQCFSSTYATVNVPSEEVNAELEDIERNNYIFSDGIGKVVPELAK 1877
            G+FSNRNVAKCAARMGQCFSSTYATV VPS EVN+EL DIERN Y+FSDGIG +  +LA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 1878 EVAEKLQLSENPPSAYQIRYAGCKGVIAVWPGHDDGIRLSLRPSMNKFESNHTVLEVVQW 2057
            EVAEKL L+ NPPSAYQIRYAG KGV+A WP  +DGI LSLRPSM KF+SNHT+LE+  W
Sbjct: 600  EVAEKLHLNVNPPSAYQIRYAGYKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSW 659

Query: 2058 TRFQPGFLNRQIVTLLSSLGVIDDVFAKMQDSMIYKLNQMLVNVDVAFEILTTSCAEQGN 2237
            TRFQPGFLNRQIVTLLSSL V D +F +MQ  MI  L++MLV+ DVAF+++T SCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 2238 TAAMMLSAGFKPQTEPHLKGMLSCIRSAQLGDLLAKARIFVPKGRWLMGCLDELGILEQG 2417
            TAA+MLSAGFKPQ+EPHL+GMLS IR++QLGDL  KARIFVP GRWLMGCLDELG LEQG
Sbjct: 720  TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 2418 QCFIQASTPSLENCFSKHGSRFSRTEQNKKVILGMVAIAKNPCLHPGDIRILEAVDVPNL 2597
            QCFIQ S+PSLENCF KHG +FS  ++N +V+ G+V IAKNPCLHPGD+RILEAVDVP+L
Sbjct: 780  QCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 2598 HHLVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDEDLIPPGKRSWVPMDYTAAEARQL 2777
             HL DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDE+LIPP K+SW+PM+Y  AE +QL
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 2778 PHPVTHQDIIDFFTKNMVNENLGVICNAHVVHADLSEYGALDEKCLQLAELAATAVDFPK 2957
               V H DIIDFF+KNMV E+LG ICNAHVVHADLSE+GALDEKCL+LAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 2958 TGKIVQMPPALKPKMYPDFMGKDDSQSYKSEKILGRLYRKIKDASDE--DFPSELICTCA 3131
            TGK+V MP  LKPKMYPDFMGK++ QSYKS+KILG+LYR++KD  D   +  + L     
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 3132 DLPYDTDLDISGASDYLAEAWQSKCAYDAQLNALLGQYRVSSEGEIVTGHIWSMPKYNSR 3311
            D+PYDT L I G++ ++ +AW SKC+YD QL+ LLGQY+V+ E E+VTGHIWSMPKY+++
Sbjct: 1020 DIPYDTTLVIPGSTVFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 3312 KQGELKERLKNAYFALHKEFRRVFETMSD--DQLADDKRSELYEQKASAWYQVTYHPRWV 3485
            KQGELKERLK+AY  L KEFR VFE M    D L DD+++++YE+KASAWYQVTY+P WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139

Query: 3486 QKSIEMKEPDGDPLPARLSFAWIAADYLVRIKVK 3587
             +S+E++ PD       LSFAWIAADYL RIK++
Sbjct: 1140 ARSLELQLPDAISSTVMLSFAWIAADYLARIKIR 1173


>ref|XP_004968861.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like [Setaria
            italica]
          Length = 1211

 Score = 1561 bits (4042), Expect = 0.0
 Identities = 762/1201 (63%), Positives = 938/1201 (78%), Gaps = 13/1201 (1%)
 Frame = +3

Query: 90   PKKEEKELVITQVSFGGFDKSISAKELADFLEDNVGLIWRCRLKASWTPPESFPDFDVTC 269
            P     +LVITQVS GGFD +++A++LADFLE  VG +WRCR+K SWTPP+++PDF +  
Sbjct: 12   PAPRAGDLVITQVSLGGFDATVTARDLADFLESEVGQVWRCRVKTSWTPPDAYPDFLLPA 71

Query: 270  -TPETP---KKDDYMEVPPHAFVHFXXXXXXXXXXXXTGCSELVLHGKPLRMNSGSESSI 437
             TP      +   Y  VPPHAFVHF             G SEL+L  KPLR  S  +SSI
Sbjct: 72   VTPAAGAAGQPPQYDRVPPHAFVHFARPEAARRAADAAGRSELILGRKPLRAASAPDSSI 131

Query: 438  RVNRRRTTDPFKFLNACVEIGTLVSRDKFWASWRGPESGVNFLIDPFDGRCKILFSKNTA 617
            R +RRR   PF+F ++ +E+G L + D F+A+WRGP++G+ F +DPFDG C+ +F+++TA
Sbjct: 132  RASRRRNVKPFRFTDSRLEVGDLPAPDSFFAAWRGPDAGLEFSVDPFDGTCRFVFTRDTA 191

Query: 618  FSFKGTRQVAMI-KCDFKVEFTVRDINEVKLCTDQAAYTLLFQLSSAPWVYYRTADDDIF 794
            F+++  RQ A++ +CD K+EF VRD+ EV+  T Q   +LL +LSS P V+YRTADDDI 
Sbjct: 192  FAYQEYRQAAVVMRCDIKLEFPVRDVAEVR--TFQLDSSLLLRLSSTPLVFYRTADDDIH 249

Query: 795  ESVPCNVLDDEDPWIRTTDFTSSGAIGRCSSYRISVSPRFGSKLERALTYLREHRIP--- 965
            ESVP ++LDD+DPWIRTTD T SGAIGRC  YR++   RF  K+E AL Y+RE R+    
Sbjct: 250  ESVPFDLLDDDDPWIRTTDITPSGAIGRCGVYRVTFPRRFWPKMEHALAYMRERRVEIVE 309

Query: 966  ---QYRSKDLIQVQNEPDFGCGMPDPFFCIQHEKGISFATMFLVNAVVHKGIINQHQLSE 1136
                + S+  + V++EP+FG  M D FFC+QH +G+ F  +FLVNA+VHKG+I QH L+ 
Sbjct: 310  CGGGWGSRRGLSVRDEPEFGERMQDLFFCMQHAEGLKFPVLFLVNALVHKGVITQHHLTP 369

Query: 1137 EFYGLLSSQSDMVNDISLRHIWSYKRPIFDAYRRLKLVQDWLLKNPKLLKRVKFSDDNAE 1316
            EF+GLL  + D VN  +LR  W  K P+FDA RRLK +QD + +NPKLL+  K   +N+E
Sbjct: 370  EFFGLLQRREDEVNVAALREFWGDKFPVFDACRRLKNLQDRVARNPKLLRN-KIGHENSE 428

Query: 1317 VRRLVITPTKAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQQLNANVLTYYVAPI 1496
            VRRLVITPT+AYCLPPEVE SNRV+R Y+EVADRFLRVTFMDEGMQQLN+NVL +  A I
Sbjct: 429  VRRLVITPTRAYCLPPEVERSNRVIRHYREVADRFLRVTFMDEGMQQLNSNVLNFSAAQI 488

Query: 1497 VKDITLNSFPQKTTVFRRVRNILTDGFYLCGRKFSFLAFSSNQLRDRSAWFFANDRNTTV 1676
            VKD+  NSF  KTTV++RV+  LT+GF++CGRK+SFLAFSSNQLRDRSAWFFA DR  TV
Sbjct: 489  VKDLMSNSFQHKTTVYKRVKTFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAEDRTRTV 548

Query: 1677 ESIRRWMGKFSNRNVAKCAARMGQCFSSTYATVNVPSEEVNAELEDIERNNYIFSDGIGK 1856
            ESIR+WMG+F+++NVAK AARMGQCFSSTYATV +  +EVN  LED+ERN Y+FSDGIGK
Sbjct: 549  ESIRKWMGRFTSKNVAKHAARMGQCFSSTYATVVMQPDEVNECLEDVERNGYVFSDGIGK 608

Query: 1857 VVPELAKEVAEKLQLSENPPSAYQIRYAGCKGVIAVWPGHDDGIRLSLRPSMNKFESNHT 2036
            + P+LA EVA+ LQL++NPPSAYQIRYAG KGVIAVW G +DGIRLSLRPSM+KFES HT
Sbjct: 609  ITPDLAMEVAKTLQLTDNPPSAYQIRYAGFKGVIAVWQGENDGIRLSLRPSMHKFESTHT 668

Query: 2037 VLEVVQWTRFQPGFLNRQIVTLLSSLGVIDDVFAKMQDSMIYKLNQMLVNVDVAFEILTT 2216
            VLEVV WT+FQPGFLNRQI+TLLSSL V D +F++MQ++M+  LN +L + DVAF+++TT
Sbjct: 669  VLEVVSWTKFQPGFLNRQIITLLSSLNVPDAIFSQMQEAMLSNLNNILSDTDVAFDVVTT 728

Query: 2217 SCAEQGNTAAMMLSAGFKPQTEPHLKGMLSCIRSAQLGDLLAKARIFVPKGRWLMGCLDE 2396
            SCAEQGNTAA+MLSAGF P TEPHLK ML  IRS+QL  LL K RIFVPKGRWLMGCLDE
Sbjct: 729  SCAEQGNTAALMLSAGFSPGTEPHLKAMLLAIRSSQLLGLLEKTRIFVPKGRWLMGCLDE 788

Query: 2397 LGILEQGQCFIQASTPSLENCFSKHGSRFSRTEQNKKVILGMVAIAKNPCLHPGDIRILE 2576
            LGILEQGQCFIQAS+P L N   KHG + S   +N + I+G V +AKNPCLHPGD+RILE
Sbjct: 789  LGILEQGQCFIQASSPMLNNFLVKHGPKCSSANKNAETIVGTVVMAKNPCLHPGDVRILE 848

Query: 2577 AVDVPNLHHLVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDEDLIPPGKRSWVPMDYT 2756
            AVDVP LHHLVDCLVFP+KG+RPHANEASGSDLDGDLYFVTWDE LIPPGK+SW PMDYT
Sbjct: 849  AVDVPELHHLVDCLVFPKKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYT 908

Query: 2757 AAEARQLPHPVTHQDIIDFFTKNMVNENLGVICNAHVVHADLSEYGALDEKCLQLAELAA 2936
             AEA+QLP  V+  DI+DFF KNMVNE LG I NAHVVHAD SEYGA+DEKC+QLAELAA
Sbjct: 909  PAEAKQLPRQVSQHDIVDFFLKNMVNEKLGPISNAHVVHADTSEYGAMDEKCIQLAELAA 968

Query: 2937 TAVDFPKTGKIVQMPPALKPKMYPDFMGKDDSQSYKSEKILGRLYRKIKDASDEDFPSEL 3116
            TAVDFPKTGKIV MPP+L+PK+YPDFM KD++ +YKS+KILGRLYR I++AS  D   E 
Sbjct: 969  TAVDFPKTGKIVSMPPSLRPKLYPDFMQKDEAITYKSDKILGRLYRSIQEASSSDLVPEE 1028

Query: 3117 ICTCADLPYDTDLDISGASDYLAEAWQSKCAYDAQLNALLGQYRVSSEGEIVTGHIWSMP 3296
             CT  DLPYDTD+++ GA+D+L+ AW  KC+Y+AQLNALL QY V +E E+VT HIWS+P
Sbjct: 1029 TCTLNDLPYDTDMEVPGATDFLSSAWLCKCSYEAQLNALLNQYGVRTEAELVTEHIWSLP 1088

Query: 3297 KYNSRKQGELKERLKNAYFALHKEFRRVFETMSDD--QLADDKRSELYEQKASAWYQVTY 3470
            KY+SRKQG++KERLKN+Y AL KE R  FE++  D  ++++D+++ +YE KASAWYQVTY
Sbjct: 1089 KYSSRKQGDIKERLKNSYSALRKELRSTFESIETDETEISEDEKNRVYEMKASAWYQVTY 1148

Query: 3471 HPRWVQKSIEMKEPDGDPLPARLSFAWIAADYLVRIKVKCXXXXXXXXXXXXXXXASYLF 3650
            HP+WVQKS EM  PD + +PARLSFAWIA DYL RIK++C               A+Y+ 
Sbjct: 1149 HPKWVQKSREMLGPDCEEMPARLSFAWIAVDYLARIKIRCQGEVRSNSQRPVERLAAYIS 1208

Query: 3651 E 3653
            E
Sbjct: 1209 E 1209


>ref|XP_003561343.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like
            [Brachypodium distachyon]
          Length = 1208

 Score = 1555 bits (4026), Expect = 0.0
 Identities = 767/1211 (63%), Positives = 937/1211 (77%), Gaps = 16/1211 (1%)
 Frame = +3

Query: 75   MGSFG---PKKEEKELVITQVSFGGFDKSISAKELADFLEDNVGLIWRCRLKASWTPPES 245
            MGS G   P+    +LV TQVS GGF   +SA ELADFLE   GL+WRCR+K SWTPP+S
Sbjct: 1    MGSLGGGAPEPAPGDLVTTQVSLGGFGAGVSASELADFLEYEAGLVWRCRVKTSWTPPDS 60

Query: 246  FPDF-DVTCTPETPKKDDYMEVPPHAFVHFXXXXXXXXXXXXTGCSELVLHGKPLRMNSG 422
            FPDF   T +        Y  VPPHAFVHF             G SEL+  GKPL + S 
Sbjct: 61   FPDFLRSTASASGAPPPPYDRVPPHAFVHFARPEAARRATDAAGKSELLFGGKPLLIASA 120

Query: 423  SESSIRVNRRRTTDPFKFLNACVEIGTLVSR-----DKFWASWRGPESGVNFLIDPFDGR 587
            S+SS+R +RR+   PF+F +A +E+G+ ++      + F A+WRGP +G+ FL+DPFD  
Sbjct: 121  SDSSLRASRRQNIKPFRFADAVLEVGSFLAPGDEAPEAFLAAWRGPAAGLEFLVDPFDAC 180

Query: 588  CKILFSKNTAFSFKGTRQVAMIKCDFKVEFTVRDINEVKLCTDQAAYTLLFQLSSAPWVY 767
            C+++F+++TAF+F G R+V ++ CD K+EF+V D+  V++  +  +  LL +L++AP VY
Sbjct: 181  CRLIFTRDTAFAFPGYREVPVMGCDVKLEFSVGDVAAVRVYRNDCS--LLLRLTAAPRVY 238

Query: 768  YRTADDDIFESVPCNVLDDEDPWIRTTDFTSSGAIGRCSSYRISVSPRFGSKLERALTYL 947
            YRTADDDI  SVP ++LDD+DPWIRTTD T SGAIGRC  YRI V+PR    ++RAL Y+
Sbjct: 239  YRTADDDIHVSVPFDLLDDDDPWIRTTDITMSGAIGRCGMYRIKVAPRKWIMMDRALAYM 298

Query: 948  REHRIPQYRS------KDLIQVQNEPDFGCGMPDPFFCIQHEKGISFATMFLVNAVVHKG 1109
            +  R+    S      +  ++V++EP+F   M D FFC+QH +G+ F  +FLVNA+VHKG
Sbjct: 299  KGQRVLIVESTVWSGPRRGLKVRDEPEFEEPMQDLFFCVQHAEGLKFPVLFLVNALVHKG 358

Query: 1110 IINQHQLSEEFYGLLSSQSDMVNDISLRHIWSYKRPIFDAYRRLKLVQDWLLKNPKLLKR 1289
            IINQHQL+ EF  LLS + D VN  +L+  W  K P+F+A +RL+     +  NPKLL+ 
Sbjct: 359  IINQHQLTPEFLSLLSGRDDDVNVAALKEFWGDKFPVFNARKRLEHAHRRVASNPKLLRS 418

Query: 1290 VKFSDDNAEVRRLVITPTKAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQQLNAN 1469
             K  DDN EVRRLVITPT A CLPP++ELSNRVLR Y EVADRFLRVTFMDEGMQ LN N
Sbjct: 419  GKVGDDNVEVRRLVITPTSASCLPPQIELSNRVLRHYHEVADRFLRVTFMDEGMQSLNNN 478

Query: 1470 VLTYYVAPIVKDITLNSFPQKTTVFRRVRNILTDGFYLCGRKFSFLAFSSNQLRDRSAWF 1649
            VL +Y APIVK +  NSF QKT V++RV+  LT+GF++CGRK+SFLAFSSNQLRDRSAWF
Sbjct: 479  VLNFYTAPIVKALRPNSFQQKTAVYKRVKMFLTEGFHMCGRKYSFLAFSSNQLRDRSAWF 538

Query: 1650 FANDRNTTVESIRRWMGKFSNRNVAKCAARMGQCFSSTYATVNVPSEEVNAELEDIERNN 1829
            FA D  TTVESIR+WMG+F+++NVAK AARMGQCFSSTYATV V  +EVN  LED+ERNN
Sbjct: 539  FAEDSKTTVESIRKWMGRFTSKNVAKHAARMGQCFSSTYATVMVKPDEVNESLEDVERNN 598

Query: 1830 YIFSDGIGKVVPELAKEVAEKLQLSENPPSAYQIRYAGCKGVIAVWPGHDDGIRLSLRPS 2009
            Y FSDGIGK+ P+LA EVAEKLQL ++PPSAYQIRYAG KGVIAVW G+++GIRLSLRPS
Sbjct: 599  YTFSDGIGKITPDLAMEVAEKLQLMDSPPSAYQIRYAGYKGVIAVWQGNNNGIRLSLRPS 658

Query: 2010 MNKFESNHTVLEVVQWTRFQPGFLNRQIVTLLSSLGVIDDVFAKMQDSMIYKLNQMLVNV 2189
            M KFES H+VLEVV WTRFQPGFLNRQI+ LLSSL V DD+F++MQ+SM++ LN++L++ 
Sbjct: 659  MKKFESKHSVLEVVSWTRFQPGFLNRQIILLLSSLNVSDDIFSQMQESMLFNLNKILLDS 718

Query: 2190 DVAFEILTTSCAEQGNTAAMMLSAGFKPQTEPHLKGMLSCIRSAQLGDLLAKARIFVPKG 2369
            DVAFE++TTSCAEQGNTAA+MLSAGF P TEPHL+GML  IRSAQL DLL K RIFVPKG
Sbjct: 719  DVAFEVVTTSCAEQGNTAALMLSAGFGPGTEPHLRGMLLAIRSAQLQDLLEKTRIFVPKG 778

Query: 2370 RWLMGCLDELGILEQGQCFIQASTPSLENCFSKHGSRFSRTEQNKKVILGMVAIAKNPCL 2549
            RWLMGCLDELG+LEQGQCF+QAS  SL+ CF KHGSRFS   +N  +I+G V IAKNPCL
Sbjct: 779  RWLMGCLDELGVLEQGQCFVQASAASLDRCFLKHGSRFS-ANKNTDIIVGTVVIAKNPCL 837

Query: 2550 HPGDIRILEAVDVPNLHHLVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDEDLIPPGK 2729
            HPGD+RILEAVDVP LHHLVDCLVFPQKG+RPH NEASGSDLDGDLYFVTWDE L+PPGK
Sbjct: 838  HPGDVRILEAVDVPELHHLVDCLVFPQKGERPHPNEASGSDLDGDLYFVTWDEKLVPPGK 897

Query: 2730 RSWVPMDYTAAEARQLPHPVTHQDIIDFFTKNMVNENLGVICNAHVVHADLSEYGALDEK 2909
            +SW PMDY+ AEA+Q    V+  DI+DFF KNMVNENLG ICNAHVVHADLSEYGA+DEK
Sbjct: 898  KSWNPMDYSPAEAKQQQRQVSQHDIVDFFLKNMVNENLGPICNAHVVHADLSEYGAMDEK 957

Query: 2910 CLQLAELAATAVDFPKTGKIVQMPPALKPKMYPDFMGKDDSQSYKSEKILGRLYRKIKDA 3089
            C++LAELAATAVDFPKTGK+V MPP L+PK+YPDFM K++S+SYKSEKILGRLYR I++A
Sbjct: 958  CIRLAELAATAVDFPKTGKLVTMPPELRPKIYPDFMLKEESRSYKSEKILGRLYRSIQEA 1017

Query: 3090 SDEDFPSELICTCADLPYDTDLDISGASDYLAEAWQSKCAYDAQLNALLGQYRVSSEGEI 3269
            S  D  SE  CT  DL YDTDL++ GAS +L  AW+ KC Y+ QLN LL Q RV +E E+
Sbjct: 1018 SGGDLVSEEACTLNDLLYDTDLEVPGASRFLTSAWECKCNYEGQLNVLLNQSRVCTEAEL 1077

Query: 3270 VTGHIWSMPKYNSRKQGELKERLKNAYFALHKEFRRVFETMSDD-QLADDKRSELYEQKA 3446
            VTGH+WS+PKYNSRKQGE++ER+KNAY AL KE+R VFE+++D  Q+ DD+++ LYE+KA
Sbjct: 1078 VTGHVWSLPKYNSRKQGEIRERIKNAYAALQKEYRSVFESLTDQCQITDDEKNLLYERKA 1137

Query: 3447 SAWYQVTYHPRWVQKSIEMKEPDGDPLPARLSFAWIAADYLVRIKVKCXXXXXXXXXXXX 3626
            SAWYQVTYHP+WV+K   M + DG+  PARLSFAWIA DYLVRIK++             
Sbjct: 1138 SAWYQVTYHPKWVEKLRAMLDEDGEERPARLSFAWIAVDYLVRIKLRSHGGVKAEGRKPV 1197

Query: 3627 XXXASYLFERI 3659
               A+Y+ ERI
Sbjct: 1198 ERLAAYISERI 1208


>sp|Q8LHH9.1|SHL2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase SHL2; AltName:
            Full=Protein SHOOTLESS 2 gi|21328146|dbj|BAC00725.1|
            putative RNA-dependent RNA polymerase [Oryza sativa
            Japonica Group] gi|157279691|dbj|BAF80151.1| SHOOTLESS2
            [Oryza sativa Japonica Group]
          Length = 1218

 Score = 1552 bits (4019), Expect = 0.0
 Identities = 763/1196 (63%), Positives = 933/1196 (78%), Gaps = 12/1196 (1%)
 Frame = +3

Query: 108  ELVITQVSFGGFDKSISAKELADFLEDNVGLIWRCRLKASWTPPESFPDFDVTCTPETPK 287
            +LV TQVS GGFD  ++A +LADFLE  VGL+WRCR+K SWTPP+S+PDF +   P +  
Sbjct: 26   DLVTTQVSLGGFDAGVAAGDLADFLEHEVGLVWRCRVKTSWTPPDSYPDFALPTAPASAS 85

Query: 288  K----DDYMEVPPHAFVHFXXXXXXXXXXXXTGCSELVLHGKPLRMNSGSESSIRVNRRR 455
                   Y  VPPHAFVHF             G + L+L GKPLR+ S  +SS+RV+RR 
Sbjct: 86   AAAAPPRYDRVPPHAFVHFARPEGARRAADLAGETRLILRGKPLRVASAPDSSLRVSRRS 145

Query: 456  TTDPFKFLNACVEIGTLVSRDKFWASWRGPESGVNFLIDPFDGRCKILFSKNTAFSFKGT 635
            +  PF+F +  +E+G L S   F A+WRGP++G++  +DPFDG C+++F+++TAF+F G 
Sbjct: 146  SIAPFRFPDVRLEVGALPSPGAFLAAWRGPDAGLDLSVDPFDGCCRLVFTRDTAFTFPGF 205

Query: 636  RQVAMIKCDFKVEFTVRDINEVKLCTDQAAYTLLFQLSSAPWVYYRTADDDIFESVPCNV 815
            R+VA I+CD K+EF VRD+ EV+L   +   +LL +L++AP V+YRTADDD  E VP ++
Sbjct: 206  REVAAIRCDVKLEFPVRDVLEVRLY--RLDCSLLLRLAAAPLVHYRTADDDFHEPVPFDL 263

Query: 816  LDDEDPWIRTTDFTSSGAIGRCSSYRISVSPRFGSKLERALTYLREHRIP------QYRS 977
            LDD+DPWIRTTD T SGAIGRC  YRIS S RF  K++RAL Y+RE R+        +  
Sbjct: 264  LDDDDPWIRTTDITPSGAIGRCGVYRISFSARFWPKMDRALDYMRERRVAIVDCGGGWGP 323

Query: 978  KDLIQVQNEPDFGCGMPDPFFCIQHEKGISFATMFLVNAVVHKGIINQHQLSEEFYGLLS 1157
            +  + V++E +FG  M D FFC+QH +G+ F  +F+VNA+VHKGIINQHQL+ EF+ LL 
Sbjct: 324  RRGLTVRDELEFGEPMQDVFFCLQHAEGLKFPLLFMVNALVHKGIINQHQLTPEFFSLLG 383

Query: 1158 SQSDMVNDISLRHIWSYKRPIFDAYRRLKLVQDWLLKNPKLLKRVKFSDDNAEVRRLVIT 1337
               + VN  +LR  W  K P+FDA  RLK   + + +NPKLL   K  DD+AEVRRLVIT
Sbjct: 384  RSEENVNVAALRDFWGDKFPVFDACGRLKKALNRVARNPKLLCS-KVGDDHAEVRRLVIT 442

Query: 1338 PTKAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQQLNANVLTYYVAPIVKDITLN 1517
            PT+AYCLPPEVE SNRVLR Y EVADRFLRVTFMDEGMQ LN NVL  + APIVKD+  N
Sbjct: 443  PTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLMSN 502

Query: 1518 SFPQKTTVFRRVRNILTDGFYLCGRKFSFLAFSSNQLRDRSAWFFANDRNTTVESIRRWM 1697
             F QKTTV++RVR +LT+GF++CGRK+SFLAFSSNQLRD+SAWFFA DR TTVE+IR+WM
Sbjct: 503  FFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTVEAIRKWM 562

Query: 1698 GKFSNRNVAKCAARMGQCFSSTYATVNVPSEEVNAELEDIERNNYIFSDGIGKVVPELAK 1877
            G+F+++NVAK AARMGQCFSSTYATV +  +EV+   +D+  N YIFSDGIGK+ P+LA 
Sbjct: 563  GRFTSKNVAKHAARMGQCFSSTYATVTMRPDEVDESFDDVVHNEYIFSDGIGKITPDLAL 622

Query: 1878 EVAEKLQLSENPPSAYQIRYAGCKGVIAVWPGHDDGIRLSLRPSMNKFESNHTVLEVVQW 2057
            EVAE+LQL++NPPSAYQIR+AG KGVIAVW GH DG RL LRPSM KFESNH VLEVV W
Sbjct: 623  EVAERLQLTDNPPSAYQIRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHLVLEVVSW 682

Query: 2058 TRFQPGFLNRQIVTLLSSLGVIDDVFAKMQDSMIYKLNQMLVNVDVAFEILTTSCAEQGN 2237
            T+FQPGFLNRQI+ LLSSL V D +F +MQ++M+  LN +L + DVAFE+LTTSCA+ GN
Sbjct: 683  TKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFEVLTTSCADDGN 742

Query: 2238 TAAMMLSAGFKPQTEPHLKGMLSCIRSAQLGDLLAKARIFVPKGRWLMGCLDELGILEQG 2417
            TAA+MLSAGF+P+TEPHLK ML  IRSAQL DLL KARIFVPKGRWLMGCLDELG+LEQG
Sbjct: 743  TAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCLDELGVLEQG 802

Query: 2418 QCFIQASTPSLENCFSKHGSRFSRTEQNKKVILGMVAIAKNPCLHPGDIRILEAVDVPNL 2597
            QCFI+A+ PSL + F KHGSRFS T++N +VILG V IAKNPCLHPGD+RILEAVDVP L
Sbjct: 803  QCFIRATVPSLNSYFVKHGSRFSSTDKNTEVILGTVVIAKNPCLHPGDVRILEAVDVPEL 862

Query: 2598 HHLVDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDEDLIPPGKRSWVPMDYTAAEARQL 2777
            HHLVDCLVFPQKG+RPHANEASGSDLDGDLYFVTWDE LIPPGK+SW PMDY+  EA+QL
Sbjct: 863  HHLVDCLVFPQKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYSPPEAKQL 922

Query: 2778 PHPVTHQDIIDFFTKNMVNENLGVICNAHVVHADLSEYGALDEKCLQLAELAATAVDFPK 2957
            P  V+  DIIDFF KNM++ENLG ICNAHVVHADLSEYGA+DEKC+ LAELAATAVDFPK
Sbjct: 923  PRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLAELAATAVDFPK 982

Query: 2958 TGKIVQMPPALKPKMYPDFMGKDDSQSYKSEKILGRLYRKIKDASDEDFPSELICTCADL 3137
            TGK+  MPP LKPK+YPDFMGK+D QSYKSEKILGRLYR I++AS+ D  S+ +CT  DL
Sbjct: 983  TGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQEASNGDVVSQEVCTPNDL 1042

Query: 3138 PYDTDLDISGASDYLAEAWQSKCAYDAQLNALLGQYRVSSEGEIVTGHIWSMPKYNSRKQ 3317
            PYD DL++ GASD+LA AWQ KC+YDAQL+ALL QYRV +E E+VTGHI  + K +S+KQ
Sbjct: 1043 PYDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHITFLVKNSSKKQ 1102

Query: 3318 GELKERLKNAYFALHKEFRRVFETMSDDQ--LADDKRSELYEQKASAWYQVTYHPRWVQK 3491
            G++K+RLK AY AL KEF+  FE+++ DQ  + DD+++ LYE KASAWYQVTYHP+WV+K
Sbjct: 1103 GDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQVTYHPKWVEK 1162

Query: 3492 SIEMKEPDGDPLPARLSFAWIAADYLVRIKVKCXXXXXXXXXXXXXXXASYLFERI 3659
            S  +  PDG+ +PA LSFAWI  DYL RIK++C               A+Y+ ERI
Sbjct: 1163 SRGILGPDGEEIPASLSFAWIPVDYLARIKLRCHGKVRVEGQKPVERLAAYISERI 1218


>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
            gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
            6 [Gossypium hirsutum]
          Length = 1196

 Score = 1551 bits (4015), Expect = 0.0
 Identities = 760/1190 (63%), Positives = 927/1190 (77%), Gaps = 5/1190 (0%)
 Frame = +3

Query: 105  KELVITQVSFGGFDKSISAKELADFLEDNVGLIWRCRLKASWTPPESFPDFDVTCTPETP 284
            KE V+TQVS GGFD+ + A++L  +LE+ VGL+WRCRLK SWTPPES+P+F++T T    
Sbjct: 8    KETVVTQVSVGGFDRHVKARDLMKYLENEVGLVWRCRLKTSWTPPESYPNFEITDTTVIQ 67

Query: 285  KKDDYMEVPPHAFVHFXXXXXXXXXXXXTGCSELVLHGKPLRMNSGSESSIRVNRRRT-T 461
            +KD+Y +V PHAFVHF             G +EL  + + L+++ G E+   +NRRR  T
Sbjct: 68   RKDNYKKVEPHAFVHFASPQAVTWAVDAAGRTELAFNNQLLKVSLGPENPYYLNRRRRDT 127

Query: 462  DPFKFLNACVEIGTLVSRDKFWASWRGPESGVNFLIDPFDGRCKILFSKNTAFSFKGTRQ 641
             PFK  +  +EIGTL S D+F   WRGP SGV FL+DPFD  CK  FS++TAFSFKGT +
Sbjct: 128  TPFKLPDVSLEIGTLASCDEFIVGWRGPPSGVEFLVDPFDCTCKFCFSRDTAFSFKGTNE 187

Query: 642  VAMIKCDFKVEFTVRDINEVKLCTDQAAYTLLFQLSSAPWVYYRTADDDIFESVPCNVLD 821
             A+IKCDFKVEF VR+INEVK  ++   + +L QL+S+PWV+YRTADDD  ++VP  +LD
Sbjct: 188  HAVIKCDFKVEFLVREINEVKQYSEPTGFVVLLQLASSPWVWYRTADDDFEKTVPFGLLD 247

Query: 822  DEDPWIRTTDFTSSGAIGRCSSYRISVSPRFGSKLERALTYLREHRIPQYRSKDLIQVQN 1001
            D+D WIRTTDFT+SGAIGRC++YR+ V PR G KL++A+ YLRE R+P    +  +++++
Sbjct: 248  DDDQWIRTTDFTASGAIGRCNTYRVLVRPRHGLKLKKAMDYLRERRVPVEDLRSQLRIRD 307

Query: 1002 EPDFGCGMPDPFFCIQHEKGISFATMFLVNAVVHKGIINQHQLSEEFYGLLSSQSDMVND 1181
            EPDFG  M D F+ I +++GI F  MFLVNAV+HKGI NQHQLS +F+ LL +QS  VN 
Sbjct: 308  EPDFGRSMSDHFYYI-YKEGIPFEIMFLVNAVLHKGIFNQHQLSMDFFRLLRNQSMEVNV 366

Query: 1182 ISLRHIWSYKRPIFDAYRRLKLVQDWLLKNPKLLKRVKFSDDNAEVRRLVITPTKAYCLP 1361
             +L+HI+SY+ P++DAY RLK V DWLLKNPKL K     DD  E+RRLVITPTKAYCL 
Sbjct: 367  AALKHIYSYRHPVYDAYERLKDVHDWLLKNPKLFKSPPQLDDIVEIRRLVITPTKAYCLL 426

Query: 1362 PEVELSNRVLRKYKEVADRFLRVTFMDEGMQQLNANVLTYYVAPIVKDITLNSFPQKTTV 1541
            PEVELSNRVLRKYK+VADRFLRVTFMDEGMQ +NANVLTYY A IV+D+T  SF QKT V
Sbjct: 427  PEVELSNRVLRKYKDVADRFLRVTFMDEGMQIMNANVLTYYNAAIVRDVTSTSFSQKTGV 486

Query: 1542 FRRVRNILTDGFYLCGRKFSFLAFSSNQLRDRSAWFFANDRNTTVESIRRWMGKFSNRNV 1721
            F+RV++ILTDGFYLCGRK+SFLAFS+NQLRDR+AWFFA D    V  I  WMGKF+NRN+
Sbjct: 487  FKRVKSILTDGFYLCGRKYSFLAFSANQLRDRAAWFFAEDGKINVLQIIGWMGKFTNRNI 546

Query: 1722 AKCAARMGQCFSSTYATVNVPSEEVNAELEDIERNNYIFSDGIGKVVPELAKEVAEKLQL 1901
            AKCAARMGQCFSSTYATV VPS +VN  L DI+RN Y FSDGIGK+ P+LA EVA+KL+L
Sbjct: 547  AKCAARMGQCFSSTYATVEVPSGQVNMHLPDIKRNGYDFSDGIGKITPDLAMEVAQKLKL 606

Query: 1902 SENPPSAYQIRYAGCKGVIAVWPGHDDGIRLSLRPSMNKFESNHTVLEVVQWTRFQPGFL 2081
              NPP AYQIRYAGCKGV+A WP   D IRLSLR SM KF S+HT LE+  WTRFQPGFL
Sbjct: 607  DLNPPCAYQIRYAGCKGVVACWPEEGDRIRLSLRSSMIKFFSHHTTLEICSWTRFQPGFL 666

Query: 2082 NRQIVTLLSSLGVIDDVFAKMQDSMIYKLNQMLVNVDVAFEILTTSCAEQGNTAAMMLSA 2261
            NRQI+TLLS+LGV D+VF  MQ+SM+ KL+++LV+ D AFE++ +SC EQG+T A+MLSA
Sbjct: 667  NRQIITLLSTLGVPDEVFWGMQNSMVSKLDKVLVDTDAAFEVVISSCGEQGHTPAIMLSA 726

Query: 2262 GFKPQTEPHLKGMLSCIRSAQLGDLLAKARIFVPKGRWLMGCLDELGILEQGQCFIQAST 2441
            GFKPQTEPHL+GML+C+R++QL  L  K+RIF+  GRWLMG LDELG+LEQGQCFIQ S 
Sbjct: 727  GFKPQTEPHLRGMLTCVRASQLWGLREKSRIFIHSGRWLMGVLDELGVLEQGQCFIQVSN 786

Query: 2442 PSLENCFSKHGSRFSRTEQNKKVILGMVAIAKNPCLHPGDIRILEAVDVPNLHHLVDCLV 2621
            PSL+NCF KHGSRF+ T++N +VI G+V IAKNPCLHPGDIRILEAVD P LHHL DCLV
Sbjct: 787  PSLQNCFLKHGSRFAETKKNFEVIKGLVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLV 846

Query: 2622 FPQKGDRPHANEASGSDLDGDLYFVTWDEDLIPPGKRSWVPMDYTAAEARQLPHPVTHQD 2801
            FPQKG+RPH NEASGSDLDGDLYFVTW+E LIPP K+S  PM Y     R+L   VTH+D
Sbjct: 847  FPQKGERPHTNEASGSDLDGDLYFVTWEEALIPPSKKSSQPMQYDLDAPRELNRSVTHKD 906

Query: 2802 IIDFFTKNMVNENLGVICNAHVVHADLSEYGALDEKCLQLAELAATAVDFPKTGKIVQMP 2981
            II+FF+KNMVNE+LG ICNAHVVH+DLSE+GA DEKC+ LAELAA AVDFPKTGKIV MP
Sbjct: 907  IIEFFSKNMVNEHLGSICNAHVVHSDLSEHGASDEKCIHLAELAAIAVDFPKTGKIVSMP 966

Query: 2982 PALKPKMYPDFMGKDDSQSYKSEKILGRLYRKIKDASDEDF--PSELICTCADLPYDTDL 3155
              LKPK+YPDFMGK++ QSYKS KILGRLYR IKDA D+D    SEL    +D+ YD DL
Sbjct: 967  AQLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDKDVSESSELNFGASDINYDADL 1026

Query: 3156 DISGASDYLAEAWQSKCAYDAQLNALLGQYRVSSEGEIVTGHIWSMPKYNSRKQGELKER 3335
            +I+G++DY+ +AW  KC+YD QL  LL QY+V  E E+VTG IWSMPKY S+K G+LKE+
Sbjct: 1027 EITGSADYITDAWAKKCSYDGQLIGLLKQYKVKREEEVVTGQIWSMPKYASKKLGDLKEK 1086

Query: 3336 LKNAYFALHKEFRRVFETMSD--DQLADDKRSELYEQKASAWYQVTYHPRWVQKSIEMKE 3509
            L ++Y +L KEFR++FE M    +QL +D++++LYE+KASAWYQVTYHP WVQK +E ++
Sbjct: 1087 LGHSYGSLRKEFRQLFENMDSEFEQLNEDEKNKLYERKASAWYQVTYHPEWVQKKLEFQK 1146

Query: 3510 PDGDPLPARLSFAWIAADYLVRIKVKCXXXXXXXXXXXXXXXASYLFERI 3659
            PDGD     LSFAWIAADYL RIKV+                  YL +RI
Sbjct: 1147 PDGDEGVVMLSFAWIAADYLARIKVRHQGTENLDFAKPVNSLVRYLADRI 1196