BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Stemona21_contig00011281
         (4253 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006650345.1| PREDICTED: DNA-directed RNA polymerase II su...  1479   0.0  
ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su...  1479   0.0  
ref|XP_004982317.1| PREDICTED: DNA-directed RNA polymerase II su...  1477   0.0  
ref|XP_004982316.1| PREDICTED: DNA-directed RNA polymerase II su...  1477   0.0  
ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II su...  1474   0.0  
gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japo...  1474   0.0  
gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptid...  1474   0.0  
ref|XP_006859038.1| hypothetical protein AMTR_s00068p00181410 [A...  1467   0.0  
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta...  1455   0.0  
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode...  1454   0.0  
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ...  1453   0.0  
ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II su...  1452   0.0  
gb|EOY28253.1| DNA-directed RNA polymerase family protein isofor...  1450   0.0  
gb|ESW20162.1| hypothetical protein PHAVU_006G185800g [Phaseolus...  1449   0.0  
gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia...  1449   0.0  
ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II su...  1448   0.0  
ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II su...  1447   0.0  
ref|XP_004499217.1| PREDICTED: DNA-directed RNA polymerase II su...  1447   0.0  
gb|EXC18122.1| DNA-directed RNA polymerase II subunit [Morus not...  1446   0.0  
gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrh...  1446   0.0  

>ref|XP_006650345.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Oryza
            brachyantha]
          Length = 1184

 Score = 1479 bits (3828), Expect = 0.0
 Identities = 723/869 (83%), Positives = 773/869 (88%)
 Frame = +3

Query: 1284 QVALDYIGKRGATVGVTREKRIKYAKEILQNEMLPHVAIGEYCETKKAYYFGYVIHRLLL 1463
            QVALDYIGKRGATVGVTREKRIKYAKEILQ EMLPHV +GE+CETKKAYYFGY+IHRLL+
Sbjct: 315  QVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLM 374

Query: 1464 CALGRRAEDDRDHYGNKRLDLAGPLFGGLFRTLFRKLARDMKSYVQKCVDSGKDFNLQFS 1643
            CALGRRAEDDRDHYGNKRLDLAGPL GGLFR LFRKL RD++SYVQKCVD+GK+ NLQF+
Sbjct: 375  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFA 434

Query: 1644 INAKTITSGLKYSLATGNWGQANQVGTRAGISQVLNRLTYASTLSHLRRLNSPIGREGKL 1823
            I AKTITSGLKYSLATGNWGQANQ GTRAG+SQVLNRLTYASTLSHLRRLNSPIGREGKL
Sbjct: 435  IKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 494

Query: 1824 VKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSVADPXXXXXXXXXXXXXXX 2003
             KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGS A+P               
Sbjct: 495  AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEE 554

Query: 2004 XSPADISQSTKIFVNGCWIGIHRNPKVLVKTLRQLRRQGDINIFVGIIRDIRLKEVRLRT 2183
             SPA I Q+ KIFVNGCW+GIHRNP +LVKTLR+LRRQ D+N  VG++RDIRLKE+RL T
Sbjct: 555  ISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYT 614

Query: 2184 DYGRCSRPLFIVEKQRLLIKKKDIQALQQKDTSGKGWHRFLEKGLIEYIDTEEEEFTMIS 2363
            DYGRCSRPLFIVE QRLLIKKK I+ALQQ++T  +GWH  + KG IEYIDTEEEE TMIS
Sbjct: 615  DYGRCSRPLFIVENQRLLIKKKHIRALQQRETPEEGWHDLVAKGFIEYIDTEEEETTMIS 674

Query: 2364 MMINDLVNARQNAEEAYCETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSTMGKQA 2543
            M INDLVNAR N EEAY ETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS MGKQA
Sbjct: 675  MTINDLVNARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 734

Query: 2544 MGLYATNYHLRMDTLAYVLYYPQKPLVTTQAMAYLHFRQLPAGINAIVAIACYSGYNQED 2723
            MG+Y TNY LRMDTLAYVLYYPQKPLVTT+AM +LHFRQLPAGINAIVAIACYSGYNQED
Sbjct: 735  MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 794

Query: 2724 SVIMNQSSIDRGFFRSLLFRSYRDEEKRMGALLKEDFGCPNRENTIGMRHGCYDKLDQDG 2903
            SVIMNQSSIDRGFFRSL FRSYRDEEK+MG L+KE+FG PNRENT+GMRHG YDKLD DG
Sbjct: 795  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDG 854

Query: 2904 LAAPGTRISGGDVIIGKTTSIPQDDSQGQASRYTHCDHSTSLRHGESGMVDQVLLTTNAD 3083
            LA PGTR+SG DVIIGKT+ IPQDD+QGQA+RYT  DHSTSLRH ESGMVDQVLLTTNAD
Sbjct: 855  LAPPGTRVSGEDVIIGKTSPIPQDDAQGQATRYTKRDHSTSLRHSESGMVDQVLLTTNAD 914

Query: 3084 GLRLVKVRIRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 3263
            GLR VKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPS
Sbjct: 915  GLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPS 974

Query: 3264 RMTIGQLIECIMGKVTTSVGREGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 3443
            RMTIGQLIECIMGKV   +G+EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR
Sbjct: 975  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1034

Query: 3444 RLSAMIFMGPTYYQRLKHMVEDKIQSRGRGPVQILTRQPVXXXXXXXXXXXXXXXXDCMI 3623
            +LSAMIF+GPTYYQRLKHMV+DKI SRGRGPVQILTRQP                 DCMI
Sbjct: 1035 KLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1094

Query: 3624 AHGAALFLKERLLEQSDVSKVHVCERCGLIAIANLKKKTTECRGCKRRSDIVQVCIPYAC 3803
            AHGAA FLKERL +QSD  +VHVCE+CGLIAIANLKK + ECRGCK ++DIVQV IPYAC
Sbjct: 1095 AHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1154

Query: 3804 KLLFQELMAMAIAPRMLTKELNTSKDQKK 3890
            KLLFQELMAMAIAPRMLT +  T KDQK+
Sbjct: 1155 KLLFQELMAMAIAPRMLTNDNKTGKDQKR 1183


>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
            vinifera] gi|147841183|emb|CAN72948.1| hypothetical
            protein VITISV_033708 [Vitis vinifera]
            gi|302143287|emb|CBI21848.3| unnamed protein product
            [Vitis vinifera]
          Length = 1193

 Score = 1479 bits (3828), Expect = 0.0
 Identities = 729/870 (83%), Positives = 772/870 (88%), Gaps = 1/870 (0%)
 Frame = +3

Query: 1284 QVALDYIGKRGATVGVTREKRIKYAKEILQNEMLPHVAIGEYCETKKAYYFGYVIHRLLL 1463
            QVALDYIGKRG+TVGVTREKRIKYAKEILQ EMLPHV +GEYCETKKAYYFGY+IHRLLL
Sbjct: 321  QVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLL 380

Query: 1464 CALGRRAEDDRDHYGNKRLDLAGPLFGGLFRTLFRKLARDMKSYVQKCVDSGKDFNLQFS 1643
            CALGRR EDDRDHYGNKRLDLAGPL GGLFR LFRKL RD+++YVQKCVD+GKD NLQF+
Sbjct: 381  CALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA 440

Query: 1644 INAKTITSGLKYSLATGNWGQANQVGTRAGISQVLNRLTYASTLSHLRRLNSPIGREGKL 1823
            I AKTITSGLKYSLATGNWGQAN  GTRAG+SQVLNRLTYASTLSHLRRLNSPIGREGKL
Sbjct: 441  IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 500

Query: 1824 VKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSVADPXXXXXXXXXXXXXXX 2003
             KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGS A+P               
Sbjct: 501  AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEE 560

Query: 2004 XSPADISQSTKIFVNGCWIGIHRNPKVLVKTLRQLRRQGDINIFVGIIRDIRLKEVRLRT 2183
             SPA I QSTKIFVNGCW+GIHRNP +LVKTLRQLRRQ D+N  VG+IRDIRLKE+RL T
Sbjct: 561  ISPAVIPQSTKIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYT 620

Query: 2184 DYGRCSRPLFIVEKQRLLIKKKDIQALQQKDT-SGKGWHRFLEKGLIEYIDTEEEEFTMI 2360
            DYGRCSRPLFIVEKQRLLIKK+DI+ALQ +++    GWH  + KG IEY+DTEEEE TMI
Sbjct: 621  DYGRCSRPLFIVEKQRLLIKKRDIRALQLRESPEDGGWHDLVSKGFIEYVDTEEEETTMI 680

Query: 2361 SMMINDLVNARQNAEEAYCETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSTMGKQ 2540
            SM INDL++AR N EEAY ETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS MGKQ
Sbjct: 681  SMTINDLISARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 740

Query: 2541 AMGLYATNYHLRMDTLAYVLYYPQKPLVTTQAMAYLHFRQLPAGINAIVAIACYSGYNQE 2720
            AMG+Y TNY LRMDTLAYVLYYPQKPLVTT+AM +LHFRQLPAGINAIVAIACYSGYNQE
Sbjct: 741  AMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 800

Query: 2721 DSVIMNQSSIDRGFFRSLLFRSYRDEEKRMGALLKEDFGCPNRENTIGMRHGCYDKLDQD 2900
            DSVIMNQSSIDRGFFRSL FRSYRDEEK+MG L+KEDFG PNRENT+GMRHG YDKLD D
Sbjct: 801  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDD 860

Query: 2901 GLAAPGTRISGGDVIIGKTTSIPQDDSQGQASRYTHCDHSTSLRHGESGMVDQVLLTTNA 3080
            GLA PGTR+SG DVIIGKTT I QDDSQGQASRYT  DHSTSLRH ESGMVDQVLLTTNA
Sbjct: 861  GLAPPGTRVSGEDVIIGKTTPISQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNA 920

Query: 3081 DGLRLVKVRIRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 3260
            DGLR VKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP
Sbjct: 921  DGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 980

Query: 3261 SRMTIGQLIECIMGKVTTSVGREGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 3440
            SRMTIGQLIECIMGKV   +G+EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG
Sbjct: 981  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1040

Query: 3441 RRLSAMIFMGPTYYQRLKHMVEDKIQSRGRGPVQILTRQPVXXXXXXXXXXXXXXXXDCM 3620
            RRL+AMIF+GPTYYQRLKHMV+DKI SRGRGPVQILTRQP                 DCM
Sbjct: 1041 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1100

Query: 3621 IAHGAALFLKERLLEQSDVSKVHVCERCGLIAIANLKKKTTECRGCKRRSDIVQVCIPYA 3800
            IAHGAA FLKERL +QSD  +VHVCERCGLIAIANLKK + ECRGCK ++DIVQV IPYA
Sbjct: 1101 IAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 1160

Query: 3801 CKLLFQELMAMAIAPRMLTKELNTSKDQKK 3890
            CKLLFQELMAMAIAPRMLTKE+   KDQKK
Sbjct: 1161 CKLLFQELMAMAIAPRMLTKEVKPPKDQKK 1190


>ref|XP_004982317.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like isoform
            X2 [Setaria italica]
          Length = 1190

 Score = 1477 bits (3824), Expect = 0.0
 Identities = 720/869 (82%), Positives = 773/869 (88%)
 Frame = +3

Query: 1284 QVALDYIGKRGATVGVTREKRIKYAKEILQNEMLPHVAIGEYCETKKAYYFGYVIHRLLL 1463
            QVALDYIGKRGATVGVTREKRIKYAKEILQ EMLPHV +GE+CETKKAYYFGY+IHRLL+
Sbjct: 321  QVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLM 380

Query: 1464 CALGRRAEDDRDHYGNKRLDLAGPLFGGLFRTLFRKLARDMKSYVQKCVDSGKDFNLQFS 1643
            CALGRRAEDDRDHYGNKRLDLAGPL GGLFR LFRKL RD++SYVQKCVD+GK+ NLQF+
Sbjct: 381  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFA 440

Query: 1644 INAKTITSGLKYSLATGNWGQANQVGTRAGISQVLNRLTYASTLSHLRRLNSPIGREGKL 1823
            I AKTITSGLKYSLATGNWGQANQ GTRAG+SQVLNRLTYASTLSHLRRLNSPIGREGKL
Sbjct: 441  IKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 500

Query: 1824 VKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSVADPXXXXXXXXXXXXXXX 2003
             KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGS A+P               
Sbjct: 501  AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEE 560

Query: 2004 XSPADISQSTKIFVNGCWIGIHRNPKVLVKTLRQLRRQGDINIFVGIIRDIRLKEVRLRT 2183
             SPA I Q+ KIFVNGCW+GIHRNP +LVKTLR+LRRQ D+N  VG++RDIRLKE+RL T
Sbjct: 561  ISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYT 620

Query: 2184 DYGRCSRPLFIVEKQRLLIKKKDIQALQQKDTSGKGWHRFLEKGLIEYIDTEEEEFTMIS 2363
            DYGRCSRPLFIVE QRLLIKK  I+ALQQ++T  +GWH  + KG IEYIDTEEEE TMIS
Sbjct: 621  DYGRCSRPLFIVENQRLLIKKAHIRALQQRETPDEGWHELVSKGYIEYIDTEEEETTMIS 680

Query: 2364 MMINDLVNARQNAEEAYCETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSTMGKQA 2543
            M INDL+NAR N EEAY ETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS MGKQA
Sbjct: 681  MTINDLINARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 740

Query: 2544 MGLYATNYHLRMDTLAYVLYYPQKPLVTTQAMAYLHFRQLPAGINAIVAIACYSGYNQED 2723
            MG+Y TNY LRMDTLAYVLYYPQKPLVTT+AM +LHFRQLPAGINAIVAI+CYSGYNQED
Sbjct: 741  MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQED 800

Query: 2724 SVIMNQSSIDRGFFRSLLFRSYRDEEKRMGALLKEDFGCPNRENTIGMRHGCYDKLDQDG 2903
            SVIMNQSSIDRGFFRSL FRSYRDEEK+MG L+KE+FG PNRENT+GMRHG YDKLD DG
Sbjct: 801  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDG 860

Query: 2904 LAAPGTRISGGDVIIGKTTSIPQDDSQGQASRYTHCDHSTSLRHGESGMVDQVLLTTNAD 3083
            LA PGTR+SG DVIIGKT+ IPQDD+QGQASRY+  DHSTSLRH ESGMVDQVLLTTNAD
Sbjct: 861  LAPPGTRVSGEDVIIGKTSPIPQDDAQGQASRYSKRDHSTSLRHSESGMVDQVLLTTNAD 920

Query: 3084 GLRLVKVRIRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 3263
            GLR VKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPS
Sbjct: 921  GLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPS 980

Query: 3264 RMTIGQLIECIMGKVTTSVGREGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 3443
            RMTIGQLIECIMGKV   +G+EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR
Sbjct: 981  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1040

Query: 3444 RLSAMIFMGPTYYQRLKHMVEDKIQSRGRGPVQILTRQPVXXXXXXXXXXXXXXXXDCMI 3623
            +L+AMIF+GPTYYQRLKHMV+DKI SRGRGPVQILTRQP                 DCMI
Sbjct: 1041 KLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1100

Query: 3624 AHGAALFLKERLLEQSDVSKVHVCERCGLIAIANLKKKTTECRGCKRRSDIVQVCIPYAC 3803
            AHGAA FLKERL +QSD  +VHVCE+CGLIAIANLKK + ECRGCK ++DIVQV IPYAC
Sbjct: 1101 AHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1160

Query: 3804 KLLFQELMAMAIAPRMLTKELNTSKDQKK 3890
            KLLFQELMAMAIAPRMLT ++ T KDQKK
Sbjct: 1161 KLLFQELMAMAIAPRMLTHDMKTGKDQKK 1189


>ref|XP_004982316.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like isoform
            X1 [Setaria italica]
          Length = 1226

 Score = 1477 bits (3824), Expect = 0.0
 Identities = 720/869 (82%), Positives = 773/869 (88%)
 Frame = +3

Query: 1284 QVALDYIGKRGATVGVTREKRIKYAKEILQNEMLPHVAIGEYCETKKAYYFGYVIHRLLL 1463
            QVALDYIGKRGATVGVTREKRIKYAKEILQ EMLPHV +GE+CETKKAYYFGY+IHRLL+
Sbjct: 357  QVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLM 416

Query: 1464 CALGRRAEDDRDHYGNKRLDLAGPLFGGLFRTLFRKLARDMKSYVQKCVDSGKDFNLQFS 1643
            CALGRRAEDDRDHYGNKRLDLAGPL GGLFR LFRKL RD++SYVQKCVD+GK+ NLQF+
Sbjct: 417  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFA 476

Query: 1644 INAKTITSGLKYSLATGNWGQANQVGTRAGISQVLNRLTYASTLSHLRRLNSPIGREGKL 1823
            I AKTITSGLKYSLATGNWGQANQ GTRAG+SQVLNRLTYASTLSHLRRLNSPIGREGKL
Sbjct: 477  IKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 536

Query: 1824 VKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSVADPXXXXXXXXXXXXXXX 2003
             KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGS A+P               
Sbjct: 537  AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEE 596

Query: 2004 XSPADISQSTKIFVNGCWIGIHRNPKVLVKTLRQLRRQGDINIFVGIIRDIRLKEVRLRT 2183
             SPA I Q+ KIFVNGCW+GIHRNP +LVKTLR+LRRQ D+N  VG++RDIRLKE+RL T
Sbjct: 597  ISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYT 656

Query: 2184 DYGRCSRPLFIVEKQRLLIKKKDIQALQQKDTSGKGWHRFLEKGLIEYIDTEEEEFTMIS 2363
            DYGRCSRPLFIVE QRLLIKK  I+ALQQ++T  +GWH  + KG IEYIDTEEEE TMIS
Sbjct: 657  DYGRCSRPLFIVENQRLLIKKAHIRALQQRETPDEGWHELVSKGYIEYIDTEEEETTMIS 716

Query: 2364 MMINDLVNARQNAEEAYCETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSTMGKQA 2543
            M INDL+NAR N EEAY ETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS MGKQA
Sbjct: 717  MTINDLINARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 776

Query: 2544 MGLYATNYHLRMDTLAYVLYYPQKPLVTTQAMAYLHFRQLPAGINAIVAIACYSGYNQED 2723
            MG+Y TNY LRMDTLAYVLYYPQKPLVTT+AM +LHFRQLPAGINAIVAI+CYSGYNQED
Sbjct: 777  MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQED 836

Query: 2724 SVIMNQSSIDRGFFRSLLFRSYRDEEKRMGALLKEDFGCPNRENTIGMRHGCYDKLDQDG 2903
            SVIMNQSSIDRGFFRSL FRSYRDEEK+MG L+KE+FG PNRENT+GMRHG YDKLD DG
Sbjct: 837  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDG 896

Query: 2904 LAAPGTRISGGDVIIGKTTSIPQDDSQGQASRYTHCDHSTSLRHGESGMVDQVLLTTNAD 3083
            LA PGTR+SG DVIIGKT+ IPQDD+QGQASRY+  DHSTSLRH ESGMVDQVLLTTNAD
Sbjct: 897  LAPPGTRVSGEDVIIGKTSPIPQDDAQGQASRYSKRDHSTSLRHSESGMVDQVLLTTNAD 956

Query: 3084 GLRLVKVRIRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 3263
            GLR VKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPS
Sbjct: 957  GLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPS 1016

Query: 3264 RMTIGQLIECIMGKVTTSVGREGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 3443
            RMTIGQLIECIMGKV   +G+EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR
Sbjct: 1017 RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1076

Query: 3444 RLSAMIFMGPTYYQRLKHMVEDKIQSRGRGPVQILTRQPVXXXXXXXXXXXXXXXXDCMI 3623
            +L+AMIF+GPTYYQRLKHMV+DKI SRGRGPVQILTRQP                 DCMI
Sbjct: 1077 KLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1136

Query: 3624 AHGAALFLKERLLEQSDVSKVHVCERCGLIAIANLKKKTTECRGCKRRSDIVQVCIPYAC 3803
            AHGAA FLKERL +QSD  +VHVCE+CGLIAIANLKK + ECRGCK ++DIVQV IPYAC
Sbjct: 1137 AHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1196

Query: 3804 KLLFQELMAMAIAPRMLTKELNTSKDQKK 3890
            KLLFQELMAMAIAPRMLT ++ T KDQKK
Sbjct: 1197 KLLFQELMAMAIAPRMLTHDMKTGKDQKK 1225


>ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Brachypodium distachyon]
          Length = 1228

 Score = 1474 bits (3816), Expect = 0.0
 Identities = 719/869 (82%), Positives = 774/869 (89%)
 Frame = +3

Query: 1284 QVALDYIGKRGATVGVTREKRIKYAKEILQNEMLPHVAIGEYCETKKAYYFGYVIHRLLL 1463
            QVALDYIGKRGATVGVTREKRIKYAKEILQ EMLPHV +GE+CETKKAYYFGY+IHRLL+
Sbjct: 359  QVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLM 418

Query: 1464 CALGRRAEDDRDHYGNKRLDLAGPLFGGLFRTLFRKLARDMKSYVQKCVDSGKDFNLQFS 1643
            CALGRRAEDDRDHYGNKRLDLAGPL GGLFR LFRKL RD++SYVQKCVD+GKD NLQF+
Sbjct: 419  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFA 478

Query: 1644 INAKTITSGLKYSLATGNWGQANQVGTRAGISQVLNRLTYASTLSHLRRLNSPIGREGKL 1823
            I AKTITSGLKYSLATGNWGQANQ GTRAG+SQVLNRLTYASTLSHLRRLNSPIGREGKL
Sbjct: 479  IKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 538

Query: 1824 VKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSVADPXXXXXXXXXXXXXXX 2003
             KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGS A+P               
Sbjct: 539  AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEE 598

Query: 2004 XSPADISQSTKIFVNGCWIGIHRNPKVLVKTLRQLRRQGDINIFVGIIRDIRLKEVRLRT 2183
             SPA I Q+ KIFVNGCW+GIHRNP +LVKTLR+LRRQ D+N  VG++RDIRLKE+RL T
Sbjct: 599  ISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYT 658

Query: 2184 DYGRCSRPLFIVEKQRLLIKKKDIQALQQKDTSGKGWHRFLEKGLIEYIDTEEEEFTMIS 2363
            DYGRCSRPLFIV+ QRLLIKKK I+ALQQ++T  +GWH  + KG IEYIDTEEEE TMIS
Sbjct: 659  DYGRCSRPLFIVDGQRLLIKKKHIRALQQRETPDEGWHDLVAKGFIEYIDTEEEETTMIS 718

Query: 2364 MMINDLVNARQNAEEAYCETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSTMGKQA 2543
            M INDLV+AR N +EAY ETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS MGKQA
Sbjct: 719  MTINDLVSARNNPQEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 778

Query: 2544 MGLYATNYHLRMDTLAYVLYYPQKPLVTTQAMAYLHFRQLPAGINAIVAIACYSGYNQED 2723
            MG+Y TNY LRMDTLAYVLYYPQKPLVTT+AM +LHFRQLPAGINAIVAIACYSGYNQED
Sbjct: 779  MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 838

Query: 2724 SVIMNQSSIDRGFFRSLLFRSYRDEEKRMGALLKEDFGCPNRENTIGMRHGCYDKLDQDG 2903
            SVIMNQSSIDRGFFRSL FRSYRDEEK+MG L+KE+FG PNRENT+GMRHG YDKLD DG
Sbjct: 839  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDG 898

Query: 2904 LAAPGTRISGGDVIIGKTTSIPQDDSQGQASRYTHCDHSTSLRHGESGMVDQVLLTTNAD 3083
            LA PGTR+SG DVIIGKT+ IPQDD+QGQA+RY+  DHSTSLRH ESGMVDQVLLTTNAD
Sbjct: 899  LAPPGTRVSGEDVIIGKTSPIPQDDAQGQATRYSKRDHSTSLRHSESGMVDQVLLTTNAD 958

Query: 3084 GLRLVKVRIRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 3263
            GLR VKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPS
Sbjct: 959  GLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPS 1018

Query: 3264 RMTIGQLIECIMGKVTTSVGREGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 3443
            RMTIGQLIECIMGKV   +G+EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR
Sbjct: 1019 RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1078

Query: 3444 RLSAMIFMGPTYYQRLKHMVEDKIQSRGRGPVQILTRQPVXXXXXXXXXXXXXXXXDCMI 3623
            +L+AMIF+GPTYYQRLKHMV+DKI SRGRGPVQILTRQP                 DCMI
Sbjct: 1079 KLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1138

Query: 3624 AHGAALFLKERLLEQSDVSKVHVCERCGLIAIANLKKKTTECRGCKRRSDIVQVCIPYAC 3803
            AHGAA FLKERL +QSD  +VHVCE+CGLIAIANLKK + ECRGCK ++DIVQV IPYAC
Sbjct: 1139 AHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1198

Query: 3804 KLLFQELMAMAIAPRMLTKELNTSKDQKK 3890
            KLLFQELMAMAIAPRMLT ++ + KDQKK
Sbjct: 1199 KLLFQELMAMAIAPRMLTHDIKSGKDQKK 1227


>gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japonica Group]
          Length = 1218

 Score = 1474 bits (3816), Expect = 0.0
 Identities = 719/869 (82%), Positives = 773/869 (88%)
 Frame = +3

Query: 1284 QVALDYIGKRGATVGVTREKRIKYAKEILQNEMLPHVAIGEYCETKKAYYFGYVIHRLLL 1463
            QVALDYIGKRGATVGVT+EKRIKYAKEILQ EMLPHV +GE+CETKKAYYFGY+IHRLL+
Sbjct: 349  QVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLM 408

Query: 1464 CALGRRAEDDRDHYGNKRLDLAGPLFGGLFRTLFRKLARDMKSYVQKCVDSGKDFNLQFS 1643
            CALGRRAEDDRDHYGNKRLDLAGPL GGLFR LFRKL RD++SYVQKCVD+GK+ NLQF+
Sbjct: 409  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFA 468

Query: 1644 INAKTITSGLKYSLATGNWGQANQVGTRAGISQVLNRLTYASTLSHLRRLNSPIGREGKL 1823
            I AKTITSGLKYSLATGNWGQANQ GTRAG+SQVLNRLTYASTLSHLRRLNSPIGREGKL
Sbjct: 469  IKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 528

Query: 1824 VKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSVADPXXXXXXXXXXXXXXX 2003
             KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGS A+P               
Sbjct: 529  AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEE 588

Query: 2004 XSPADISQSTKIFVNGCWIGIHRNPKVLVKTLRQLRRQGDINIFVGIIRDIRLKEVRLRT 2183
             SPA I Q+ KIFVNGCW+GIHRNP +LVKTLR+LRRQ D+N  VG++RDIRLKE+RL T
Sbjct: 589  ISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYT 648

Query: 2184 DYGRCSRPLFIVEKQRLLIKKKDIQALQQKDTSGKGWHRFLEKGLIEYIDTEEEEFTMIS 2363
            DYGRCSRPLFIVE QRLLIKK+ I+ALQQ++T  +GWH  + KG IEYIDTEEEE TMIS
Sbjct: 649  DYGRCSRPLFIVENQRLLIKKRHIRALQQRETPEEGWHDLVAKGFIEYIDTEEEETTMIS 708

Query: 2364 MMINDLVNARQNAEEAYCETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSTMGKQA 2543
            M INDL+ AR N EEAY ETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS MGKQA
Sbjct: 709  MTINDLIGARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 768

Query: 2544 MGLYATNYHLRMDTLAYVLYYPQKPLVTTQAMAYLHFRQLPAGINAIVAIACYSGYNQED 2723
            MG+Y TNY LRMDTLAYVLYYPQKPLVTT+AM +LHFRQLPAGINAIVAIACYSGYNQED
Sbjct: 769  MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 828

Query: 2724 SVIMNQSSIDRGFFRSLLFRSYRDEEKRMGALLKEDFGCPNRENTIGMRHGCYDKLDQDG 2903
            SVIMNQSSIDRGFFRSL FRSYRDEEK+MG L+KE+FG PNRENT+GMRHG YDKLD DG
Sbjct: 829  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDG 888

Query: 2904 LAAPGTRISGGDVIIGKTTSIPQDDSQGQASRYTHCDHSTSLRHGESGMVDQVLLTTNAD 3083
            LA PGTR+SG DVIIGKT+ IPQDD+QGQA+RYT  DHSTSLRH ESGMVDQVLLTTNAD
Sbjct: 889  LAPPGTRVSGEDVIIGKTSPIPQDDAQGQATRYTKRDHSTSLRHSESGMVDQVLLTTNAD 948

Query: 3084 GLRLVKVRIRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 3263
            GLR VKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPS
Sbjct: 949  GLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPS 1008

Query: 3264 RMTIGQLIECIMGKVTTSVGREGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 3443
            RMTIGQLIECIMGKV   +G+EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR
Sbjct: 1009 RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1068

Query: 3444 RLSAMIFMGPTYYQRLKHMVEDKIQSRGRGPVQILTRQPVXXXXXXXXXXXXXXXXDCMI 3623
            +L+AMIF+GPTYYQRLKHMV+DKI SRGRGPVQILTRQP                 DCMI
Sbjct: 1069 KLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1128

Query: 3624 AHGAALFLKERLLEQSDVSKVHVCERCGLIAIANLKKKTTECRGCKRRSDIVQVCIPYAC 3803
            AHGAA FLKERL +QSD  +VHVCE+CGLIAIANLKK + ECRGCK ++DIVQV IPYAC
Sbjct: 1129 AHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1188

Query: 3804 KLLFQELMAMAIAPRMLTKELNTSKDQKK 3890
            KLLFQELMAMAIAPRMLT++  T KDQKK
Sbjct: 1189 KLLFQELMAMAIAPRMLTQDNKTGKDQKK 1217


>gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative,
            expressed [Oryza sativa Japonica Group]
            gi|125545063|gb|EAY91202.1| hypothetical protein
            OsI_12811 [Oryza sativa Indica Group]
          Length = 1222

 Score = 1474 bits (3816), Expect = 0.0
 Identities = 719/869 (82%), Positives = 773/869 (88%)
 Frame = +3

Query: 1284 QVALDYIGKRGATVGVTREKRIKYAKEILQNEMLPHVAIGEYCETKKAYYFGYVIHRLLL 1463
            QVALDYIGKRGATVGVT+EKRIKYAKEILQ EMLPHV +GE+CETKKAYYFGY+IHRLL+
Sbjct: 353  QVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLM 412

Query: 1464 CALGRRAEDDRDHYGNKRLDLAGPLFGGLFRTLFRKLARDMKSYVQKCVDSGKDFNLQFS 1643
            CALGRRAEDDRDHYGNKRLDLAGPL GGLFR LFRKL RD++SYVQKCVD+GK+ NLQF+
Sbjct: 413  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFA 472

Query: 1644 INAKTITSGLKYSLATGNWGQANQVGTRAGISQVLNRLTYASTLSHLRRLNSPIGREGKL 1823
            I AKTITSGLKYSLATGNWGQANQ GTRAG+SQVLNRLTYASTLSHLRRLNSPIGREGKL
Sbjct: 473  IKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 532

Query: 1824 VKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSVADPXXXXXXXXXXXXXXX 2003
             KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGS A+P               
Sbjct: 533  AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEE 592

Query: 2004 XSPADISQSTKIFVNGCWIGIHRNPKVLVKTLRQLRRQGDINIFVGIIRDIRLKEVRLRT 2183
             SPA I Q+ KIFVNGCW+GIHRNP +LVKTLR+LRRQ D+N  VG++RDIRLKE+RL T
Sbjct: 593  ISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYT 652

Query: 2184 DYGRCSRPLFIVEKQRLLIKKKDIQALQQKDTSGKGWHRFLEKGLIEYIDTEEEEFTMIS 2363
            DYGRCSRPLFIVE QRLLIKK+ I+ALQQ++T  +GWH  + KG IEYIDTEEEE TMIS
Sbjct: 653  DYGRCSRPLFIVENQRLLIKKRHIRALQQRETPEEGWHDLVAKGFIEYIDTEEEETTMIS 712

Query: 2364 MMINDLVNARQNAEEAYCETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSTMGKQA 2543
            M INDL+ AR N EEAY ETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS MGKQA
Sbjct: 713  MTINDLIGARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 772

Query: 2544 MGLYATNYHLRMDTLAYVLYYPQKPLVTTQAMAYLHFRQLPAGINAIVAIACYSGYNQED 2723
            MG+Y TNY LRMDTLAYVLYYPQKPLVTT+AM +LHFRQLPAGINAIVAIACYSGYNQED
Sbjct: 773  MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 832

Query: 2724 SVIMNQSSIDRGFFRSLLFRSYRDEEKRMGALLKEDFGCPNRENTIGMRHGCYDKLDQDG 2903
            SVIMNQSSIDRGFFRSL FRSYRDEEK+MG L+KE+FG PNRENT+GMRHG YDKLD DG
Sbjct: 833  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDG 892

Query: 2904 LAAPGTRISGGDVIIGKTTSIPQDDSQGQASRYTHCDHSTSLRHGESGMVDQVLLTTNAD 3083
            LA PGTR+SG DVIIGKT+ IPQDD+QGQA+RYT  DHSTSLRH ESGMVDQVLLTTNAD
Sbjct: 893  LAPPGTRVSGEDVIIGKTSPIPQDDAQGQATRYTKRDHSTSLRHSESGMVDQVLLTTNAD 952

Query: 3084 GLRLVKVRIRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 3263
            GLR VKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPS
Sbjct: 953  GLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPS 1012

Query: 3264 RMTIGQLIECIMGKVTTSVGREGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 3443
            RMTIGQLIECIMGKV   +G+EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR
Sbjct: 1013 RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1072

Query: 3444 RLSAMIFMGPTYYQRLKHMVEDKIQSRGRGPVQILTRQPVXXXXXXXXXXXXXXXXDCMI 3623
            +L+AMIF+GPTYYQRLKHMV+DKI SRGRGPVQILTRQP                 DCMI
Sbjct: 1073 KLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1132

Query: 3624 AHGAALFLKERLLEQSDVSKVHVCERCGLIAIANLKKKTTECRGCKRRSDIVQVCIPYAC 3803
            AHGAA FLKERL +QSD  +VHVCE+CGLIAIANLKK + ECRGCK ++DIVQV IPYAC
Sbjct: 1133 AHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1192

Query: 3804 KLLFQELMAMAIAPRMLTKELNTSKDQKK 3890
            KLLFQELMAMAIAPRMLT++  T KDQKK
Sbjct: 1193 KLLFQELMAMAIAPRMLTQDNKTGKDQKK 1221


>ref|XP_006859038.1| hypothetical protein AMTR_s00068p00181410 [Amborella trichopoda]
            gi|548863150|gb|ERN20505.1| hypothetical protein
            AMTR_s00068p00181410 [Amborella trichopoda]
          Length = 1190

 Score = 1467 bits (3797), Expect = 0.0
 Identities = 718/869 (82%), Positives = 770/869 (88%)
 Frame = +3

Query: 1284 QVALDYIGKRGATVGVTREKRIKYAKEILQNEMLPHVAIGEYCETKKAYYFGYVIHRLLL 1463
            QVALDYIGKRG+TVGVT+EKRIKYAKEILQ EMLPHV +GEYCETKKAYYFGY+IHRLL+
Sbjct: 315  QVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLV 374

Query: 1464 CALGRRAEDDRDHYGNKRLDLAGPLFGGLFRTLFRKLARDMKSYVQKCVDSGKDFNLQFS 1643
            CALGRR EDDRDHYGNKRLDLAGPL G LFRT+FRKL RD++SYVQKCVD+GK+ NLQF+
Sbjct: 375  CALGRRPEDDRDHYGNKRLDLAGPLLGSLFRTMFRKLTRDVRSYVQKCVDNGKEVNLQFA 434

Query: 1644 INAKTITSGLKYSLATGNWGQANQVGTRAGISQVLNRLTYASTLSHLRRLNSPIGREGKL 1823
            I AKTITSGLKYSLATGNWGQAN  GTRAG+SQVLNRLT+ASTLSHLRRLNSPIGREGKL
Sbjct: 435  IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKL 494

Query: 1824 VKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSVADPXXXXXXXXXXXXXXX 2003
             KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGS A+P               
Sbjct: 495  AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEE 554

Query: 2004 XSPADISQSTKIFVNGCWIGIHRNPKVLVKTLRQLRRQGDINIFVGIIRDIRLKEVRLRT 2183
             SPA I Q+TKIFVNGCW+GIHRNP++LVKTLRQLRRQ D+N  VG+IRDIRLKE+RL T
Sbjct: 555  ISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYT 614

Query: 2184 DYGRCSRPLFIVEKQRLLIKKKDIQALQQKDTSGKGWHRFLEKGLIEYIDTEEEEFTMIS 2363
            DYGRCSRPLFIVEKQRLLIKK DI+ALQQ+++  +GWH  + KG IEY+DTEEEE TMIS
Sbjct: 615  DYGRCSRPLFIVEKQRLLIKKSDIRALQQRESPDEGWHDLVAKGFIEYVDTEEEETTMIS 674

Query: 2364 MMINDLVNARQNAEEAYCETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSTMGKQA 2543
            M I+DLV+AR N EEAY ETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS MGKQA
Sbjct: 675  MTISDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 734

Query: 2544 MGLYATNYHLRMDTLAYVLYYPQKPLVTTQAMAYLHFRQLPAGINAIVAIACYSGYNQED 2723
            MG+Y TNY LRMDTLAYVLYYPQKPLVTT+AM +LHFRQLPAGINAIVAI+CYSGYNQED
Sbjct: 735  MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQED 794

Query: 2724 SVIMNQSSIDRGFFRSLLFRSYRDEEKRMGALLKEDFGCPNRENTIGMRHGCYDKLDQDG 2903
            SVIMNQSSIDRGFFRSL FRSYRDEEK+MG L+KEDFG PNRENT+GMRHG YDKLD DG
Sbjct: 795  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDG 854

Query: 2904 LAAPGTRISGGDVIIGKTTSIPQDDSQGQASRYTHCDHSTSLRHGESGMVDQVLLTTNAD 3083
            LA PGTR+SG DVIIGKTT I Q++ QGQASRYT  DHSTSLRH ESGMVDQVLLTTNAD
Sbjct: 855  LAPPGTRVSGEDVIIGKTTPITQEEMQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNAD 914

Query: 3084 GLRLVKVRIRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 3263
            GLR VKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS
Sbjct: 915  GLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 974

Query: 3264 RMTIGQLIECIMGKVTTSVGREGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 3443
            RMTIGQLIECIMGKV   +G+EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR
Sbjct: 975  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1034

Query: 3444 RLSAMIFMGPTYYQRLKHMVEDKIQSRGRGPVQILTRQPVXXXXXXXXXXXXXXXXDCMI 3623
            RLSAMIF+GPTYYQRLKHMV+DKI SRGRGPVQILTRQP                 DCMI
Sbjct: 1035 RLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1094

Query: 3624 AHGAALFLKERLLEQSDVSKVHVCERCGLIAIANLKKKTTECRGCKRRSDIVQVCIPYAC 3803
            AHGAA FLKERL +QSD  +VHVCE+CGLIAIANLKK + ECRGCK ++DI+QV IPYAC
Sbjct: 1095 AHGAAHFLKERLFDQSDAYRVHVCEQCGLIAIANLKKNSFECRGCKNKTDIIQVHIPYAC 1154

Query: 3804 KLLFQELMAMAIAPRMLTKELNTSKDQKK 3890
            KLLFQELMAMAIAPRM TKE    KD KK
Sbjct: 1155 KLLFQELMAMAIAPRMFTKEEKKPKDHKK 1183


>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 1194

 Score = 1455 bits (3767), Expect = 0.0
 Identities = 715/870 (82%), Positives = 770/870 (88%), Gaps = 1/870 (0%)
 Frame = +3

Query: 1284 QVALDYIGKRGATVGVTREKRIKYAKEILQNEMLPHVAIGEYCETKKAYYFGYVIHRLLL 1463
            QVALDYIGKRGATVGVT+EKRIKYAKEILQ EMLPHV +GEYCETKKAYYFGY+IHRLLL
Sbjct: 322  QVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLL 381

Query: 1464 CALGRRAEDDRDHYGNKRLDLAGPLFGGLFRTLFRKLARDMKSYVQKCVDSGKDFNLQFS 1643
            CALGRRAEDDRDHYGNKRLDLAGPL GGLFR LFRKL RD++SYVQKCVD+GKD NLQF+
Sbjct: 382  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFA 441

Query: 1644 INAKTITSGLKYSLATGNWGQANQVGTRAGISQVLNRLTYASTLSHLRRLNSPIGREGKL 1823
            I AKTITSGLKYSLATGNWGQAN  GTRAG+SQVLNRLTYASTLSHLRRLNSPIGREGKL
Sbjct: 442  IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 501

Query: 1824 VKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSVADPXXXXXXXXXXXXXXX 2003
             KPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGS A P               
Sbjct: 502  AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 561

Query: 2004 XSPADISQSTKIFVNGCWIGIHRNPKVLVKTLRQLRRQGDINIFVGIIRDIRLKEVRLRT 2183
             SPA I Q+TKIFVNGCW+GIHR+P +LVKTLR+LRR+ D+N  VG++RDIRLKE+R+ T
Sbjct: 562  ISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYT 621

Query: 2184 DYGRCSRPLFIVEKQRLLIKKKDIQALQQKDTSGKG-WHRFLEKGLIEYIDTEEEEFTMI 2360
            DYGRCSRPLFIVEKQRLLIKKKDI ALQQ+++S +G WH  + KG IEYIDTEEEE TMI
Sbjct: 622  DYGRCSRPLFIVEKQRLLIKKKDIHALQQRESSEEGGWHDLVAKGFIEYIDTEEEETTMI 681

Query: 2361 SMMINDLVNARQNAEEAYCETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSTMGKQ 2540
            SM I+DLV AR N EEAY +TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS MGKQ
Sbjct: 682  SMTIHDLVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 741

Query: 2541 AMGLYATNYHLRMDTLAYVLYYPQKPLVTTQAMAYLHFRQLPAGINAIVAIACYSGYNQE 2720
            AMG+Y TNY  RMDTLAYVLYYPQKPLVTT+AM +LHFRQLPAGINAIVAIACYSGYNQE
Sbjct: 742  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 801

Query: 2721 DSVIMNQSSIDRGFFRSLLFRSYRDEEKRMGALLKEDFGCPNRENTIGMRHGCYDKLDQD 2900
            DSVIMNQSSIDRGFFRSL FRSYRDEEK+MG L+KEDFG P+R NT+GMRHG YDKLD D
Sbjct: 802  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDD 861

Query: 2901 GLAAPGTRISGGDVIIGKTTSIPQDDSQGQASRYTHCDHSTSLRHGESGMVDQVLLTTNA 3080
            GLA PGTR+SG DVIIGKTT I Q+++QGQ++RYT  DHS SLRH E+G+VDQVLLTTNA
Sbjct: 862  GLAPPGTRVSGEDVIIGKTTPIAQEEAQGQSARYTRRDHSISLRHSETGIVDQVLLTTNA 921

Query: 3081 DGLRLVKVRIRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 3260
            DGLR VKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP
Sbjct: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981

Query: 3261 SRMTIGQLIECIMGKVTTSVGREGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 3440
            SRMTIGQLIECIMGKV   +G+EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG
Sbjct: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1041

Query: 3441 RRLSAMIFMGPTYYQRLKHMVEDKIQSRGRGPVQILTRQPVXXXXXXXXXXXXXXXXDCM 3620
            RRL+AMIF+GPTYYQRLKHMV+DKI SRGRGPVQILTRQP                 DCM
Sbjct: 1042 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101

Query: 3621 IAHGAALFLKERLLEQSDVSKVHVCERCGLIAIANLKKKTTECRGCKRRSDIVQVCIPYA 3800
            IAHGAA FLKERL +QSD  +VHVCERCGLIAIANLKK + ECRGCK ++DIVQV IPYA
Sbjct: 1102 IAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 1161

Query: 3801 CKLLFQELMAMAIAPRMLTKELNTSKDQKK 3890
            CKLLFQELMAMAIAPRMLTK++  +KDQKK
Sbjct: 1162 CKLLFQELMAMAIAPRMLTKDVKPTKDQKK 1191


>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1191

 Score = 1454 bits (3763), Expect = 0.0
 Identities = 711/870 (81%), Positives = 769/870 (88%), Gaps = 1/870 (0%)
 Frame = +3

Query: 1284 QVALDYIGKRGATVGVTREKRIKYAKEILQNEMLPHVAIGEYCETKKAYYFGYVIHRLLL 1463
            QVALDYIGKRGATVGVT+EKRIKYAKEILQ EMLPHV +GEYCETKKAYYFGY+IHRLLL
Sbjct: 319  QVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLL 378

Query: 1464 CALGRRAEDDRDHYGNKRLDLAGPLFGGLFRTLFRKLARDMKSYVQKCVDSGKDFNLQFS 1643
            CALGRRAEDDRDHYGNKRLDLAGPL GGLFR LFRKL RD++ YVQKCVD+GKD NLQF+
Sbjct: 379  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFA 438

Query: 1644 INAKTITSGLKYSLATGNWGQANQVGTRAGISQVLNRLTYASTLSHLRRLNSPIGREGKL 1823
            I AKTITSGLKYSLATGNWGQAN  GTRAG+SQVLNRLTYASTLSHLRRLNSPIGREGKL
Sbjct: 439  IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 498

Query: 1824 VKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSVADPXXXXXXXXXXXXXXX 2003
             KPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGS A P               
Sbjct: 499  AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 558

Query: 2004 XSPADISQSTKIFVNGCWIGIHRNPKVLVKTLRQLRRQGDINIFVGIIRDIRLKEVRLRT 2183
             SPA I Q+TKIFVNGCW+GIHR+P +LV+TLR+LRR+ D+N  VG++RDIRLKE+R+ T
Sbjct: 559  ISPAVIPQATKIFVNGCWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYT 618

Query: 2184 DYGRCSRPLFIVEKQRLLIKKKDIQALQQKDT-SGKGWHRFLEKGLIEYIDTEEEEFTMI 2360
            DYGRCSRPLFIVEKQRLLIK+KDIQALQQ++T    GWH  + KG IEYIDTEEEE TMI
Sbjct: 619  DYGRCSRPLFIVEKQRLLIKRKDIQALQQRETPEDGGWHDLVAKGFIEYIDTEEEETTMI 678

Query: 2361 SMMINDLVNARQNAEEAYCETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSTMGKQ 2540
            SM INDLV+AR N EEAY ETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS MGKQ
Sbjct: 679  SMTINDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 738

Query: 2541 AMGLYATNYHLRMDTLAYVLYYPQKPLVTTQAMAYLHFRQLPAGINAIVAIACYSGYNQE 2720
            AMG+Y TNY  RMDT+AYVLYYPQKPLVTT+AM +LHFRQLPAGINAIVAIACYSGYNQE
Sbjct: 739  AMGIYVTNYQFRMDTVAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 798

Query: 2721 DSVIMNQSSIDRGFFRSLLFRSYRDEEKRMGALLKEDFGCPNRENTIGMRHGCYDKLDQD 2900
            DSVIMNQSSIDRGFFRSL FRSYRDEEK+MG L+KEDFG P+R NT+GMRHG YDKLD D
Sbjct: 799  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDD 858

Query: 2901 GLAAPGTRISGGDVIIGKTTSIPQDDSQGQASRYTHCDHSTSLRHGESGMVDQVLLTTNA 3080
            GLA PGTR+SG DV+IGKTT I QD++QG A+RYT  DHSTSLRH E+GMVDQVLLTTNA
Sbjct: 859  GLAPPGTRVSGEDVVIGKTTPIAQDEAQGPAARYTRRDHSTSLRHSETGMVDQVLLTTNA 918

Query: 3081 DGLRLVKVRIRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 3260
            DGLR VKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIP
Sbjct: 919  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDIIVNPHAIP 978

Query: 3261 SRMTIGQLIECIMGKVTTSVGREGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 3440
            SRMTIGQLIECIMGKV   +G+EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG
Sbjct: 979  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1038

Query: 3441 RRLSAMIFMGPTYYQRLKHMVEDKIQSRGRGPVQILTRQPVXXXXXXXXXXXXXXXXDCM 3620
            RRL++MIF+GPTYYQRLKHMV+DKI SRGRGPVQILTRQP                 DCM
Sbjct: 1039 RRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1098

Query: 3621 IAHGAALFLKERLLEQSDVSKVHVCERCGLIAIANLKKKTTECRGCKRRSDIVQVCIPYA 3800
            IAHGAA FLKERL +QSD  ++HVCERCGLIAIANLKK + ECRGCK ++DIVQV IPYA
Sbjct: 1099 IAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 1158

Query: 3801 CKLLFQELMAMAIAPRMLTKELNTSKDQKK 3890
            CKLLFQELM+MAIAPRMLTK++  +KD+KK
Sbjct: 1159 CKLLFQELMSMAIAPRMLTKDVKQAKDKKK 1188


>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
            gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
            Full=DNA-directed RNA polymerase II subunit RPB2;
            Short=RNA polymerase II subunit 2; Short=RNA polymerase
            II subunit B2; AltName: Full=DNA-directed RNA polymerase
            II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
            polymerase II subunit 2 [Solanum lycopersicum]
          Length = 1191

 Score = 1453 bits (3762), Expect = 0.0
 Identities = 715/870 (82%), Positives = 767/870 (88%), Gaps = 1/870 (0%)
 Frame = +3

Query: 1284 QVALDYIGKRGATVGVTREKRIKYAKEILQNEMLPHVAIGEYCETKKAYYFGYVIHRLLL 1463
            QVALDYIGKRGATVGVTREKRIKYAKEILQ EMLPHV +GEYCETKKAYYFGY+IHRLLL
Sbjct: 319  QVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLL 378

Query: 1464 CALGRRAEDDRDHYGNKRLDLAGPLFGGLFRTLFRKLARDMKSYVQKCVDSGKDFNLQFS 1643
            CALGRRAEDDRDHYGNKRLDLAGPL GGLFR LFRKL RD++ YVQKCVD+GKD NLQF+
Sbjct: 379  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFA 438

Query: 1644 INAKTITSGLKYSLATGNWGQANQVGTRAGISQVLNRLTYASTLSHLRRLNSPIGREGKL 1823
            I AKTITSGLKYSLATGNWGQAN  GTRAG+SQVLNRLTYASTLSHLRRLNSPIGREGKL
Sbjct: 439  IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 498

Query: 1824 VKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSVADPXXXXXXXXXXXXXXX 2003
             KPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGS A P               
Sbjct: 499  AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 558

Query: 2004 XSPADISQSTKIFVNGCWIGIHRNPKVLVKTLRQLRRQGDINIFVGIIRDIRLKEVRLRT 2183
             SPA I Q+TKIFVNG W+GIHR+P +LV+TLR+LRR+ D+N  VG++RDIRLKE+R+ T
Sbjct: 559  ISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYT 618

Query: 2184 DYGRCSRPLFIVEKQRLLIKKKDIQALQQKDTSGKG-WHRFLEKGLIEYIDTEEEEFTMI 2360
            DYGRCSRPLFIVEKQRL+IKKKDIQ LQQ+++  +G WH  + KG IEYIDTEEEE TMI
Sbjct: 619  DYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGYIEYIDTEEEETTMI 678

Query: 2361 SMMINDLVNARQNAEEAYCETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSTMGKQ 2540
            SM INDLV AR N  +AY +TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS MGKQ
Sbjct: 679  SMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 738

Query: 2541 AMGLYATNYHLRMDTLAYVLYYPQKPLVTTQAMAYLHFRQLPAGINAIVAIACYSGYNQE 2720
            AMG+Y TNY  RMDTLAYVLYYPQKPLVTT+AM +LHFRQLPAGINAIVAI+CYSGYNQE
Sbjct: 739  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQE 798

Query: 2721 DSVIMNQSSIDRGFFRSLLFRSYRDEEKRMGALLKEDFGCPNRENTIGMRHGCYDKLDQD 2900
            DSVIMNQSSIDRGFFRSL FRSYRDEEK+MG L+KEDFG P+R +T+GMRHG YDKLD D
Sbjct: 799  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDD 858

Query: 2901 GLAAPGTRISGGDVIIGKTTSIPQDDSQGQASRYTHCDHSTSLRHGESGMVDQVLLTTNA 3080
            GLA PGTR+SG DVIIGKTT I QDD+QGQASRYT  DHSTSLRH E+GMVDQVLLTTNA
Sbjct: 859  GLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNA 918

Query: 3081 DGLRLVKVRIRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 3260
            DGLR VKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP
Sbjct: 919  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 978

Query: 3261 SRMTIGQLIECIMGKVTTSVGREGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 3440
            SRMTIGQLIECIMGKV   +G+EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG
Sbjct: 979  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1038

Query: 3441 RRLSAMIFMGPTYYQRLKHMVEDKIQSRGRGPVQILTRQPVXXXXXXXXXXXXXXXXDCM 3620
            RRLSAMIF+GPTYYQRLKHMV+DKI SRGRGPVQILTRQP                 DCM
Sbjct: 1039 RRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1098

Query: 3621 IAHGAALFLKERLLEQSDVSKVHVCERCGLIAIANLKKKTTECRGCKRRSDIVQVCIPYA 3800
            IAHGAA FLKERL +QSD  +VHVCERCGLIAIANLKK + ECRGCK ++DIVQV IPYA
Sbjct: 1099 IAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 1158

Query: 3801 CKLLFQELMAMAIAPRMLTKELNTSKDQKK 3890
            CKLLFQELMAMAIAPRMLTK++  +KDQKK
Sbjct: 1159 CKLLFQELMAMAIAPRMLTKDVKLAKDQKK 1188


>ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Solanum
            tuberosum]
          Length = 1191

 Score = 1452 bits (3759), Expect = 0.0
 Identities = 715/872 (81%), Positives = 767/872 (87%), Gaps = 1/872 (0%)
 Frame = +3

Query: 1284 QVALDYIGKRGATVGVTREKRIKYAKEILQNEMLPHVAIGEYCETKKAYYFGYVIHRLLL 1463
            QVALDYIGKRGATVGVTREKRIKYAKEILQ EMLPHV +GEYCETKKAYYFGY+IHRLLL
Sbjct: 319  QVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLL 378

Query: 1464 CALGRRAEDDRDHYGNKRLDLAGPLFGGLFRTLFRKLARDMKSYVQKCVDSGKDFNLQFS 1643
            CALGRRAEDDRDHYGNKRLDLAGPL GGLFR LFRKL RD++ YVQKCVD+GKD NLQF+
Sbjct: 379  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFA 438

Query: 1644 INAKTITSGLKYSLATGNWGQANQVGTRAGISQVLNRLTYASTLSHLRRLNSPIGREGKL 1823
            I AKTITSGLKYSLATGNWGQAN  GTRAG+SQVLNRLTYASTLSHLRRLNSPIGREGKL
Sbjct: 439  IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 498

Query: 1824 VKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSVADPXXXXXXXXXXXXXXX 2003
             KPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGS A P               
Sbjct: 499  AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 558

Query: 2004 XSPADISQSTKIFVNGCWIGIHRNPKVLVKTLRQLRRQGDINIFVGIIRDIRLKEVRLRT 2183
             SPA I Q+TKIFVNG W+GIHR+P +LV+TLR+LRR+ D+N  VG++RDIRLKE+R+ T
Sbjct: 559  ISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYT 618

Query: 2184 DYGRCSRPLFIVEKQRLLIKKKDIQALQQKDTSGKG-WHRFLEKGLIEYIDTEEEEFTMI 2360
            DYGRCSRPLFIVEKQRL+IKKKDIQ LQQ+++  +G WH  + KG IEYIDTEEEE TMI
Sbjct: 619  DYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGYIEYIDTEEEETTMI 678

Query: 2361 SMMINDLVNARQNAEEAYCETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSTMGKQ 2540
            SM INDLV AR N  +AY +TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS MGKQ
Sbjct: 679  SMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 738

Query: 2541 AMGLYATNYHLRMDTLAYVLYYPQKPLVTTQAMAYLHFRQLPAGINAIVAIACYSGYNQE 2720
            AMG+Y TNY  RMDTLAYVLYYPQKPLVTT+AM +LHFRQLPAGINAIVAI+CYSGYNQE
Sbjct: 739  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQE 798

Query: 2721 DSVIMNQSSIDRGFFRSLLFRSYRDEEKRMGALLKEDFGCPNRENTIGMRHGCYDKLDQD 2900
            DSVIMNQSSIDRGFFRSL FRSYRDEEK+MG L+KEDFG P+R  T+GMRHG YDKLD D
Sbjct: 799  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRATTMGMRHGSYDKLDDD 858

Query: 2901 GLAAPGTRISGGDVIIGKTTSIPQDDSQGQASRYTHCDHSTSLRHGESGMVDQVLLTTNA 3080
            GLA PGTR+SG DVIIGKTT I QDD+QGQASRYT  DHSTSLRH E+GMVDQVLLTTNA
Sbjct: 859  GLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNA 918

Query: 3081 DGLRLVKVRIRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 3260
            DGLR VKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDIIVNPHAIP
Sbjct: 919  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIP 978

Query: 3261 SRMTIGQLIECIMGKVTTSVGREGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 3440
            SRMTIGQLIECIMGKV   +G+EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG
Sbjct: 979  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1038

Query: 3441 RRLSAMIFMGPTYYQRLKHMVEDKIQSRGRGPVQILTRQPVXXXXXXXXXXXXXXXXDCM 3620
            RRLSAMIF+GPTYYQRLKHMV+DKI SRGRGPVQILTRQP                 DCM
Sbjct: 1039 RRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1098

Query: 3621 IAHGAALFLKERLLEQSDVSKVHVCERCGLIAIANLKKKTTECRGCKRRSDIVQVCIPYA 3800
            IAHGAA FLKERL +QSD  +VHVCERCGLIAIANLKK + ECRGCK ++DIVQV IPYA
Sbjct: 1099 IAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 1158

Query: 3801 CKLLFQELMAMAIAPRMLTKELNTSKDQKKGA 3896
            CKLLFQELMAMAIAPRMLTK++  +KDQKK A
Sbjct: 1159 CKLLFQELMAMAIAPRMLTKDVKLAKDQKKKA 1190


>gb|EOY28253.1| DNA-directed RNA polymerase family protein isoform 1 [Theobroma
            cacao]
          Length = 1189

 Score = 1450 bits (3754), Expect = 0.0
 Identities = 716/870 (82%), Positives = 765/870 (87%), Gaps = 1/870 (0%)
 Frame = +3

Query: 1284 QVALDYIGKRGATVGVTREKRIKYAKEILQNEMLPHVAIGEYCETKKAYYFGYVIHRLLL 1463
            QVALDYIGKRGATVGVTREKRIKYAKEILQ EMLPHV +G++CETKKAYYFGY+IHRLLL
Sbjct: 319  QVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGDFCETKKAYYFGYIIHRLLL 378

Query: 1464 CALGRRAEDDRDHYGNKRLDLAGPLFGGLFRTLFRKLARDMKSYVQKCVDSGKDFNLQFS 1643
            CALGRRAEDDRDHYGNKRLDLAGPL GGLFR LFRKL RD++SYVQKCVD+GKD NLQF+
Sbjct: 379  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFA 438

Query: 1644 INAKTITSGLKYSLATGNWGQANQVGTRAGISQVLNRLTYASTLSHLRRLNSPIGREGKL 1823
            I AKTITSGLKYSLATGNWGQAN  GTRAG+SQVLNRLTYASTLSHLRRLNSPIGREGKL
Sbjct: 439  IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 498

Query: 1824 VKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSVADPXXXXXXXXXXXXXXX 2003
             KPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGS A P               
Sbjct: 499  AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 558

Query: 2004 XSPADISQSTKIFVNGCWIGIHRNPKVLVKTLRQLRRQGDINIFVGIIRDIRLKEVRLRT 2183
             SPA I Q+TKIFVNGCW+G+HRNP +LV TLR+LRR+ D+N  VG++RDIRLKE+R+ T
Sbjct: 559  ISPAVIPQATKIFVNGCWVGVHRNPDMLVTTLRRLRRRVDVNTEVGVVRDIRLKELRIYT 618

Query: 2184 DYGRCSRPLFIVEKQRLLIKKKDIQALQQKDT-SGKGWHRFLEKGLIEYIDTEEEEFTMI 2360
            DYGRCSRPLFIVEKQRLLIKKKDI ALQQ+++    GWH  + KG IEYIDTEEEE TMI
Sbjct: 619  DYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMI 678

Query: 2361 SMMINDLVNARQNAEEAYCETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSTMGKQ 2540
            SM INDLV AR N EEAY ETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS MGKQ
Sbjct: 679  SMTINDLVQARVNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 738

Query: 2541 AMGLYATNYHLRMDTLAYVLYYPQKPLVTTQAMAYLHFRQLPAGINAIVAIACYSGYNQE 2720
            AMG+Y TNY  RMDTLAYVLYYPQKPLVTT+AM +LHFRQLPAGINAIVAIACYSGYNQE
Sbjct: 739  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 798

Query: 2721 DSVIMNQSSIDRGFFRSLLFRSYRDEEKRMGALLKEDFGCPNRENTIGMRHGCYDKLDQD 2900
            DSVIMNQSSIDRGFFRSL FRSYRDEEK+MG L+KEDFG P+R NT+GMRHG YDKLD D
Sbjct: 799  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDD 858

Query: 2901 GLAAPGTRISGGDVIIGKTTSIPQDDSQGQASRYTHCDHSTSLRHGESGMVDQVLLTTNA 3080
            GLA PGTR+SG DVIIGKTT I Q+++QGQASRY+  DHS SLRH E+G+VDQVLLTTNA
Sbjct: 859  GLAPPGTRVSGEDVIIGKTTPISQEEAQGQASRYSRRDHSISLRHSETGIVDQVLLTTNA 918

Query: 3081 DGLRLVKVRIRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 3260
            DGLR VKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP
Sbjct: 919  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 978

Query: 3261 SRMTIGQLIECIMGKVTTSVGREGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 3440
            SRMTIGQLIECIMGKV   +G+EGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTG
Sbjct: 979  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTG 1038

Query: 3441 RRLSAMIFMGPTYYQRLKHMVEDKIQSRGRGPVQILTRQPVXXXXXXXXXXXXXXXXDCM 3620
            RRLSAMIF+GPTYYQRLKHMV+DKI SRGRGPVQILTRQP                 DCM
Sbjct: 1039 RRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1098

Query: 3621 IAHGAALFLKERLLEQSDVSKVHVCERCGLIAIANLKKKTTECRGCKRRSDIVQVCIPYA 3800
            IAHGAA FLKERL +QSD  +VHVCERCGLIAIANLKK + ECRGCK ++DIVQV IPYA
Sbjct: 1099 IAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYA 1158

Query: 3801 CKLLFQELMAMAIAPRMLTKELNTSKDQKK 3890
            CKLLFQELMAMAIAPRMLTKE    KDQKK
Sbjct: 1159 CKLLFQELMAMAIAPRMLTKE--PPKDQKK 1186


>gb|ESW20162.1| hypothetical protein PHAVU_006G185800g [Phaseolus vulgaris]
          Length = 1194

 Score = 1449 bits (3751), Expect = 0.0
 Identities = 712/870 (81%), Positives = 767/870 (88%), Gaps = 1/870 (0%)
 Frame = +3

Query: 1284 QVALDYIGKRGATVGVTREKRIKYAKEILQNEMLPHVAIGEYCETKKAYYFGYVIHRLLL 1463
            QVALDYIGKRGATVGVT+EKRIKYAKEILQ EMLPHV +GEYCETKKAYYFGY+IHRLLL
Sbjct: 322  QVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLL 381

Query: 1464 CALGRRAEDDRDHYGNKRLDLAGPLFGGLFRTLFRKLARDMKSYVQKCVDSGKDFNLQFS 1643
            CALGRRAEDDRDHYGNKRLDLAGPL GGLFR LFRKL RD++ YVQKCVD+GKD NLQF+
Sbjct: 382  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFA 441

Query: 1644 INAKTITSGLKYSLATGNWGQANQVGTRAGISQVLNRLTYASTLSHLRRLNSPIGREGKL 1823
            I AKTITSGLKYSLATGNWGQAN  GTRAG+SQVLNRLT+ASTLSHLRRLNSPIGREGKL
Sbjct: 442  IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKL 501

Query: 1824 VKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSVADPXXXXXXXXXXXXXXX 2003
             KPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGS A P               
Sbjct: 502  AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 561

Query: 2004 XSPADISQSTKIFVNGCWIGIHRNPKVLVKTLRQLRRQGDINIFVGIIRDIRLKEVRLRT 2183
             SPA I Q+TKIFVNG W+GIHR+P +LV+TLR+LRR+ D+N  VG++RDIRLKE+R+ T
Sbjct: 562  ISPAVIPQATKIFVNGSWMGIHRDPDMLVRTLRKLRRRVDVNTEVGVVRDIRLKELRIYT 621

Query: 2184 DYGRCSRPLFIVEKQRLLIKKKDIQALQQKDTSGKG-WHRFLEKGLIEYIDTEEEEFTMI 2360
            DYGRCSRPLFIV+KQRLLIKK+DI ALQQ+++  +G WH  + KG IEYIDTEEEE TMI
Sbjct: 622  DYGRCSRPLFIVDKQRLLIKKRDIHALQQRESPEEGGWHDLVSKGFIEYIDTEEEETTMI 681

Query: 2361 SMMINDLVNARQNAEEAYCETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSTMGKQ 2540
            SM INDLV AR N E+AY +TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS MGKQ
Sbjct: 682  SMTINDLVQARLNPEDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 741

Query: 2541 AMGLYATNYHLRMDTLAYVLYYPQKPLVTTQAMAYLHFRQLPAGINAIVAIACYSGYNQE 2720
            AMG+Y TNY  RMDTLAYVLYYPQKPLVTT+AM +LHFRQLPAGINAIVAIACYSGYNQE
Sbjct: 742  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 801

Query: 2721 DSVIMNQSSIDRGFFRSLLFRSYRDEEKRMGALLKEDFGCPNRENTIGMRHGCYDKLDQD 2900
            DSVIMNQSSIDRGFFRSL FRSYRDEEK+MG L+KEDFG P+R NT+GMRHG YDKLD D
Sbjct: 802  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNTMGMRHGSYDKLDDD 861

Query: 2901 GLAAPGTRISGGDVIIGKTTSIPQDDSQGQASRYTHCDHSTSLRHGESGMVDQVLLTTNA 3080
            GLA PGTR+SG DVIIGKTT I Q+++QGQA RYT  DHS SLRH E+GMVDQVLLTTNA
Sbjct: 862  GLAPPGTRVSGEDVIIGKTTPISQEEAQGQALRYTRRDHSISLRHSETGMVDQVLLTTNA 921

Query: 3081 DGLRLVKVRIRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 3260
            DGLR VKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP
Sbjct: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981

Query: 3261 SRMTIGQLIECIMGKVTTSVGREGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 3440
            SRMTIGQLIECIMGKV   +G+EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG
Sbjct: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1041

Query: 3441 RRLSAMIFMGPTYYQRLKHMVEDKIQSRGRGPVQILTRQPVXXXXXXXXXXXXXXXXDCM 3620
            RRLSAMIF+GPTYYQRLKHMV+DKI SRGRGPVQILTRQP                 DCM
Sbjct: 1042 RRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101

Query: 3621 IAHGAALFLKERLLEQSDVSKVHVCERCGLIAIANLKKKTTECRGCKRRSDIVQVCIPYA 3800
            IAHGAA FLKERL +QSD  +VHVCERCGLIAIANLKK + ECRGCK ++DIVQV IPYA
Sbjct: 1102 IAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYA 1161

Query: 3801 CKLLFQELMAMAIAPRMLTKELNTSKDQKK 3890
            CKLLFQELMAMAIAPRMLTKE+ ++KDQKK
Sbjct: 1162 CKLLFQELMAMAIAPRMLTKEIKSAKDQKK 1191


>gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia x hybrida]
          Length = 1195

 Score = 1449 bits (3751), Expect = 0.0
 Identities = 713/870 (81%), Positives = 768/870 (88%), Gaps = 1/870 (0%)
 Frame = +3

Query: 1284 QVALDYIGKRGATVGVTREKRIKYAKEILQNEMLPHVAIGEYCETKKAYYFGYVIHRLLL 1463
            QVALDYIGKRGATVGVT+EKRIKYAKEILQ EMLPHV +GEYCETKKAYYFGY+IHRLLL
Sbjct: 323  QVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLL 382

Query: 1464 CALGRRAEDDRDHYGNKRLDLAGPLFGGLFRTLFRKLARDMKSYVQKCVDSGKDFNLQFS 1643
            CALGRRAEDDRDHYGNKRLDLAGPL GGLFR LFRKL RD++SYVQKCVD+GKD NLQF+
Sbjct: 383  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFA 442

Query: 1644 INAKTITSGLKYSLATGNWGQANQVGTRAGISQVLNRLTYASTLSHLRRLNSPIGREGKL 1823
            I AKTITSGLKYSLATGNWGQAN  GTRAG+SQVLNRLTYASTLSHLRRLNSPIGREGKL
Sbjct: 443  IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 502

Query: 1824 VKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSVADPXXXXXXXXXXXXXXX 2003
             KPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGS A P               
Sbjct: 503  AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEXGTENFEE 562

Query: 2004 XSPADISQSTKIFVNGCWIGIHRNPKVLVKTLRQLRRQGDINIFVGIIRDIRLKEVRLRT 2183
             SPA I Q+TKIFV+G W+GIHR+P +LV+TLR+LRR+ D+N  VG++RDIRLKE+R+ T
Sbjct: 563  ISPAVIPQATKIFVBGTWMGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYT 622

Query: 2184 DYGRCSRPLFIVEKQRLLIKKKDIQALQQKDTSGKG-WHRFLEKGLIEYIDTEEEEFTMI 2360
            DYGRCSRPLFIVEKQ+LLIKKKDIQ LQQ++T  +G WH  + KG IEYIDTEEEE TMI
Sbjct: 623  DYGRCSRPLFIVEKQKLLIKKKDIQQLQQRETPEEGGWHDLVAKGYIEYIDTEEEETTMI 682

Query: 2361 SMMINDLVNARQNAEEAYCETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSTMGKQ 2540
            SM INDLV A  N E+AY +TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS MGKQ
Sbjct: 683  SMTINDLVQASINPEDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 742

Query: 2541 AMGLYATNYHLRMDTLAYVLYYPQKPLVTTQAMAYLHFRQLPAGINAIVAIACYSGYNQE 2720
            AMG+Y TNY  RMDTLAYVLYYPQKPLVTT+AM +LHFRQLPAGINAIVAI+CYSGYNQE
Sbjct: 743  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQE 802

Query: 2721 DSVIMNQSSIDRGFFRSLLFRSYRDEEKRMGALLKEDFGCPNRENTIGMRHGCYDKLDQD 2900
            DSVIMNQSSIDRGFFRSL FRSYRDEEK+MG L+KEDFG P+R +T+GMRHG YDKLD D
Sbjct: 803  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDD 862

Query: 2901 GLAAPGTRISGGDVIIGKTTSIPQDDSQGQASRYTHCDHSTSLRHGESGMVDQVLLTTNA 3080
            GLA PGTR+SG DVIIGKTT I QDD+QGQASRYT  DHSTSLRH E+GMVDQVLLTTNA
Sbjct: 863  GLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNA 922

Query: 3081 DGLRLVKVRIRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 3260
            DGLR VKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIP
Sbjct: 923  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIP 982

Query: 3261 SRMTIGQLIECIMGKVTTSVGREGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 3440
            SRMTIGQLIECIMGKV   +G+EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG
Sbjct: 983  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1042

Query: 3441 RRLSAMIFMGPTYYQRLKHMVEDKIQSRGRGPVQILTRQPVXXXXXXXXXXXXXXXXDCM 3620
            RRL AMIF+GPTYYQRLKHMV+DKI SRGRGPVQILTRQP                 DCM
Sbjct: 1043 RRLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1102

Query: 3621 IAHGAALFLKERLLEQSDVSKVHVCERCGLIAIANLKKKTTECRGCKRRSDIVQVCIPYA 3800
            IAHGAA FLKERL +QSD  +VHVCERCGLIAIANLKK + ECRGCK ++DIVQV IPYA
Sbjct: 1103 IAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 1162

Query: 3801 CKLLFQELMAMAIAPRMLTKELNTSKDQKK 3890
            CKLLFQELMAMAIAPRMLTK++  ++DQKK
Sbjct: 1163 CKLLFQELMAMAIAPRMLTKDVKQARDQKK 1192


>ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1193

 Score = 1448 bits (3749), Expect = 0.0
 Identities = 713/872 (81%), Positives = 765/872 (87%), Gaps = 1/872 (0%)
 Frame = +3

Query: 1284 QVALDYIGKRGATVGVTREKRIKYAKEILQNEMLPHVAIGEYCETKKAYYFGYVIHRLLL 1463
            QVALDYIGKRGATVGVT+EKRIKYAKEILQ EMLPHV +GEYCETKKAYYFGY+IHRLLL
Sbjct: 322  QVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLL 381

Query: 1464 CALGRRAEDDRDHYGNKRLDLAGPLFGGLFRTLFRKLARDMKSYVQKCVDSGKDFNLQFS 1643
            CALGRRAEDDRDHYGNKRLDLAGPL GGLFR LFRKL RD++ YVQKCVD+GKD NLQF+
Sbjct: 382  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFA 441

Query: 1644 INAKTITSGLKYSLATGNWGQANQVGTRAGISQVLNRLTYASTLSHLRRLNSPIGREGKL 1823
            I AKTITSGLKYSLATGNWGQAN  GTRAG+SQVLNRLTYASTLSHLRRLNSPIGREGKL
Sbjct: 442  IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 501

Query: 1824 VKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSVADPXXXXXXXXXXXXXXX 2003
             KPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGS A P               
Sbjct: 502  AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 561

Query: 2004 XSPADISQSTKIFVNGCWIGIHRNPKVLVKTLRQLRRQGDINIFVGIIRDIRLKEVRLRT 2183
             SPA I Q+TKIFVNGCW+GIHR+P +LV+TLR+LRR+ D+N  VG++RDI LKE+R+ T
Sbjct: 562  ISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRVDVNTEVGVVRDIILKELRIYT 621

Query: 2184 DYGRCSRPLFIVEKQRLLIKKKDIQALQQKDT-SGKGWHRFLEKGLIEYIDTEEEEFTMI 2360
            DYGRCSRPLFIV+KQRLLIKKKDI ALQQ+++    GWH  + KG IEYIDTEEEE TMI
Sbjct: 622  DYGRCSRPLFIVDKQRLLIKKKDIHALQQRESPEDGGWHDLVSKGFIEYIDTEEEETTMI 681

Query: 2361 SMMINDLVNARQNAEEAYCETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSTMGKQ 2540
            SM INDLV AR N E+AY  TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS MGKQ
Sbjct: 682  SMTINDLVQARINPEDAYAGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 741

Query: 2541 AMGLYATNYHLRMDTLAYVLYYPQKPLVTTQAMAYLHFRQLPAGINAIVAIACYSGYNQE 2720
            AMG+Y TNY  RMDTLAYVLYYPQKPLVTT+AM +LHFRQLPAGINAIVAIACYSGYNQE
Sbjct: 742  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 801

Query: 2721 DSVIMNQSSIDRGFFRSLLFRSYRDEEKRMGALLKEDFGCPNRENTIGMRHGCYDKLDQD 2900
            DSVIMNQSSIDRGFFRSL FRSYRDEEK+MG L+KEDFG P+R NT+GMRHG YDKLD D
Sbjct: 802  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDD 861

Query: 2901 GLAAPGTRISGGDVIIGKTTSIPQDDSQGQASRYTHCDHSTSLRHGESGMVDQVLLTTNA 3080
            GLA PGTR+SG DVIIGKTT I Q+++QGQA RYT  DHS SLRH E+G+VDQVLLTTNA
Sbjct: 862  GLAPPGTRVSGEDVIIGKTTPISQEEAQGQALRYTRRDHSISLRHSETGIVDQVLLTTNA 921

Query: 3081 DGLRLVKVRIRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 3260
            DGLR VKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP
Sbjct: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981

Query: 3261 SRMTIGQLIECIMGKVTTSVGREGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 3440
            SRMTIGQLIECIMGKV   +G+EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG
Sbjct: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1041

Query: 3441 RRLSAMIFMGPTYYQRLKHMVEDKIQSRGRGPVQILTRQPVXXXXXXXXXXXXXXXXDCM 3620
            RRLSAMIF+GPTYYQRLKHMV+DKI SRGRGPVQILTRQP                 DCM
Sbjct: 1042 RRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101

Query: 3621 IAHGAALFLKERLLEQSDVSKVHVCERCGLIAIANLKKKTTECRGCKRRSDIVQVCIPYA 3800
            IAHGAA FLKERL +QSD  +VHVCERCGLIAIANLKK + ECRGCK ++DIVQV IPYA
Sbjct: 1102 IAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYA 1161

Query: 3801 CKLLFQELMAMAIAPRMLTKELNTSKDQKKGA 3896
            CKLLFQELMAMAIAPRMLTKE+ T+  +KKGA
Sbjct: 1162 CKLLFQELMAMAIAPRMLTKEVKTTNQKKKGA 1193


>ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1192

 Score = 1447 bits (3747), Expect = 0.0
 Identities = 713/872 (81%), Positives = 768/872 (88%), Gaps = 1/872 (0%)
 Frame = +3

Query: 1284 QVALDYIGKRGATVGVTREKRIKYAKEILQNEMLPHVAIGEYCETKKAYYFGYVIHRLLL 1463
            QVALDYIGKRGATVGVT+EKRIKYAKEILQ EMLPHV +GEYCETKKAYYFGY+IHRLLL
Sbjct: 322  QVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLL 381

Query: 1464 CALGRRAEDDRDHYGNKRLDLAGPLFGGLFRTLFRKLARDMKSYVQKCVDSGKDFNLQFS 1643
            CALGRRAEDDRDHYGNKRLDLAGPL GGLFR LFRKL RD++ YVQKCVD+GKD NLQF+
Sbjct: 382  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFA 441

Query: 1644 INAKTITSGLKYSLATGNWGQANQVGTRAGISQVLNRLTYASTLSHLRRLNSPIGREGKL 1823
            I AKTITSGLKYSLATGNWGQAN  GTRAG+SQVLNRLTYASTLSHLRRLNSPIGREGKL
Sbjct: 442  IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 501

Query: 1824 VKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSVADPXXXXXXXXXXXXXXX 2003
             KPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGS A P               
Sbjct: 502  AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 561

Query: 2004 XSPADISQSTKIFVNGCWIGIHRNPKVLVKTLRQLRRQGDINIFVGIIRDIRLKEVRLRT 2183
             SPA I Q+TKIFVNGCW+GIHR+P +LV+TL++LRR+ D+N  VG++RDIRLKE+R+ T
Sbjct: 562  ISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLKKLRRRVDVNTEVGVVRDIRLKELRIYT 621

Query: 2184 DYGRCSRPLFIVEKQRLLIKKKDIQALQQKDT-SGKGWHRFLEKGLIEYIDTEEEEFTMI 2360
            DYGRCSRPLFIV+KQRLLIKKKDI ALQQ+++    GWH  + KG IEYIDTEEEE TMI
Sbjct: 622  DYGRCSRPLFIVDKQRLLIKKKDIHALQQRESPEDGGWHDLVSKGFIEYIDTEEEETTMI 681

Query: 2361 SMMINDLVNARQNAEEAYCETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSTMGKQ 2540
            SM INDLV AR N E+AY +TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS MGKQ
Sbjct: 682  SMTINDLVQARINPEDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 741

Query: 2541 AMGLYATNYHLRMDTLAYVLYYPQKPLVTTQAMAYLHFRQLPAGINAIVAIACYSGYNQE 2720
            AMG+Y TNY  RMDTLAYVLYYPQKPLVTT+AM +LHFRQLPAGINAIV+IACYSGYNQE
Sbjct: 742  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVSIACYSGYNQE 801

Query: 2721 DSVIMNQSSIDRGFFRSLLFRSYRDEEKRMGALLKEDFGCPNRENTIGMRHGCYDKLDQD 2900
            DSVIMNQSSIDRGFFRSL FRSYRDEEK+MG L+KEDFG P+R NT+GMRHG YDKLD D
Sbjct: 802  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDD 861

Query: 2901 GLAAPGTRISGGDVIIGKTTSIPQDDSQGQASRYTHCDHSTSLRHGESGMVDQVLLTTNA 3080
            GLA PGTR+SG DVIIGKTT I Q+++QGQA RYT  DHS SLRH E+G+VDQVLLTTNA
Sbjct: 862  GLAPPGTRVSGEDVIIGKTTPISQEEAQGQALRYTRRDHSISLRHSETGIVDQVLLTTNA 921

Query: 3081 DGLRLVKVRIRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 3260
            DGLR VKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP
Sbjct: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981

Query: 3261 SRMTIGQLIECIMGKVTTSVGREGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 3440
            SRMTIGQLIECIMGKV   +G+EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG
Sbjct: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1041

Query: 3441 RRLSAMIFMGPTYYQRLKHMVEDKIQSRGRGPVQILTRQPVXXXXXXXXXXXXXXXXDCM 3620
            RRLSAMIF+GPTYYQRLKHMV+DKI SRGRGPVQILTRQP                 DCM
Sbjct: 1042 RRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101

Query: 3621 IAHGAALFLKERLLEQSDVSKVHVCERCGLIAIANLKKKTTECRGCKRRSDIVQVCIPYA 3800
            IAHGAA FLKERL +QSD  +VHVCERCGLIAIANLKK + ECRGCK ++DIVQV IPYA
Sbjct: 1102 IAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYA 1161

Query: 3801 CKLLFQELMAMAIAPRMLTKELNTSKDQKKGA 3896
            CKLLFQELMAMAIAPRMLTKE+ T+ +QKKGA
Sbjct: 1162 CKLLFQELMAMAIAPRMLTKEVKTT-NQKKGA 1192


>ref|XP_004499217.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cicer
            arietinum]
          Length = 1194

 Score = 1447 bits (3746), Expect = 0.0
 Identities = 709/870 (81%), Positives = 767/870 (88%), Gaps = 1/870 (0%)
 Frame = +3

Query: 1284 QVALDYIGKRGATVGVTREKRIKYAKEILQNEMLPHVAIGEYCETKKAYYFGYVIHRLLL 1463
            QVALDYIGKRGATVGVT+EKRIKYAK+ILQ EMLPHV +GEYCETKKAYYFGY+IHRLLL
Sbjct: 322  QVALDYIGKRGATVGVTKEKRIKYAKDILQREMLPHVGVGEYCETKKAYYFGYIIHRLLL 381

Query: 1464 CALGRRAEDDRDHYGNKRLDLAGPLFGGLFRTLFRKLARDMKSYVQKCVDSGKDFNLQFS 1643
            CALGRRAEDDRDHYGNKRLDLAGPL GGLFR LFRKL RD++ YVQKCVD+GKD NLQF+
Sbjct: 382  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFA 441

Query: 1644 INAKTITSGLKYSLATGNWGQANQVGTRAGISQVLNRLTYASTLSHLRRLNSPIGREGKL 1823
            I AKTITSGLKYSLATGNWGQAN  GTRAG+SQVLNRLTYASTLSHLRRLNSPIGREGKL
Sbjct: 442  IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 501

Query: 1824 VKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSVADPXXXXXXXXXXXXXXX 2003
             KPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGS A P               
Sbjct: 502  AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 561

Query: 2004 XSPADISQSTKIFVNGCWIGIHRNPKVLVKTLRQLRRQGDINIFVGIIRDIRLKEVRLRT 2183
             SPA I Q+TKIFVNGCW+GIHR+P +LV+TLR+LRR+ D+N  VG++RDIRLKE+R+ T
Sbjct: 562  ISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRVDVNTEVGVVRDIRLKELRIYT 621

Query: 2184 DYGRCSRPLFIVEKQRLLIKKKDIQALQQKDTSGKG-WHRFLEKGLIEYIDTEEEEFTMI 2360
            DYGRCSRPLFIV+KQRLLIKKKDI +LQQ+++  +G WH  + KG IEYIDTEEEE TMI
Sbjct: 622  DYGRCSRPLFIVDKQRLLIKKKDIHSLQQRESPEEGGWHDLVSKGFIEYIDTEEEETTMI 681

Query: 2361 SMMINDLVNARQNAEEAYCETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSTMGKQ 2540
            SM INDLV AR N EEAY +TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS MGKQ
Sbjct: 682  SMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 741

Query: 2541 AMGLYATNYHLRMDTLAYVLYYPQKPLVTTQAMAYLHFRQLPAGINAIVAIACYSGYNQE 2720
            AMG+Y TNY  RMDTLAYVLYYPQKPLVTT+AM +LHFRQLPAGINAIVAI+CYSGYNQE
Sbjct: 742  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQE 801

Query: 2721 DSVIMNQSSIDRGFFRSLLFRSYRDEEKRMGALLKEDFGCPNRENTIGMRHGCYDKLDQD 2900
            DSVIMNQSSIDRGFFRSL FRSYRDEEK+MG L+KEDFG P+R NT+GMRHG YDKLD D
Sbjct: 802  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDD 861

Query: 2901 GLAAPGTRISGGDVIIGKTTSIPQDDSQGQASRYTHCDHSTSLRHGESGMVDQVLLTTNA 3080
            GLA PGTR+SG DVIIGKTT + Q+++QGQA+RY+  DHS SLRH E+G+VDQVLLTTNA
Sbjct: 862  GLAPPGTRVSGEDVIIGKTTPLSQEEAQGQAARYSKRDHSISLRHSETGIVDQVLLTTNA 921

Query: 3081 DGLRLVKVRIRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 3260
            DGLR VKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP
Sbjct: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981

Query: 3261 SRMTIGQLIECIMGKVTTSVGREGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 3440
            SRMTIGQLIECIMGKV   +G+EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG
Sbjct: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1041

Query: 3441 RRLSAMIFMGPTYYQRLKHMVEDKIQSRGRGPVQILTRQPVXXXXXXXXXXXXXXXXDCM 3620
            RRLSAMIF+GPTYYQRLKHMV+DKI SRGRGPVQILTRQP                 DCM
Sbjct: 1042 RRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101

Query: 3621 IAHGAALFLKERLLEQSDVSKVHVCERCGLIAIANLKKKTTECRGCKRRSDIVQVCIPYA 3800
            IAHGAA FLKERL +QSD  +VHVCE CGLIAIANLKK + ECRGCK ++DIVQV IPYA
Sbjct: 1102 IAHGAAHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYA 1161

Query: 3801 CKLLFQELMAMAIAPRMLTKELNTSKDQKK 3890
            CKLLFQELMAMAIAPRMLTKE+ + KDQKK
Sbjct: 1162 CKLLFQELMAMAIAPRMLTKEIKSIKDQKK 1191


>gb|EXC18122.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
          Length = 1193

 Score = 1446 bits (3744), Expect = 0.0
 Identities = 713/871 (81%), Positives = 765/871 (87%), Gaps = 2/871 (0%)
 Frame = +3

Query: 1284 QVALDYIGKRGATVGVTREKRIKYAKEILQNEMLPHVAIGEYCETKKAYYFGYVIHRLLL 1463
            QVALDYIGKRGATVGVT+EKRIKYAKEILQ EMLPHV  GE+CETKKAYYFGY+IHRLLL
Sbjct: 320  QVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGTGEFCETKKAYYFGYIIHRLLL 379

Query: 1464 CALGRRAEDDRDHYGNKRLDLAGPLFGGLFRTLFRKLARDMKSYVQKCVDSGKDFNLQFS 1643
            CALGRRAEDDRDHYGNKRLDLAGPL GGLFR LFRKL RD++ YVQKCVD+GKD NLQF+
Sbjct: 380  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFA 439

Query: 1644 INAKTITSGLKYSLATGNWGQANQVGTRAGISQVLNRLTYASTLSHLRRLNSPIGREGKL 1823
            I AKTITSGLKYSLATGNWGQAN  GTRAG+SQVLNRLTYASTLSHLRRLNSPIGREGKL
Sbjct: 440  IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 499

Query: 1824 VKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSVADPXXXXXXXXXXXXXXX 2003
             KPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGS A P               
Sbjct: 500  AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 559

Query: 2004 XSPADISQSTKIFVNGCWIGIHRNPKVLVKTLRQLRRQGDINIFVGIIRDIRLKEVRLRT 2183
             SPA I Q+TKIFVNGCW+GIHR+P +LVKTLR+LRR+ D+N  VG++RDIRLKE+R+ T
Sbjct: 560  ISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYT 619

Query: 2184 DYGRCSRPLFIVEKQRLLIKKKDIQALQQKDTSGK-GWHRFLEKGLIEYIDTEEEEFTMI 2360
            DYGRCSRPLFIVEKQRLLIKK+DI+ALQQ++T  + GWH  +  G IEYIDTEEEE TMI
Sbjct: 620  DYGRCSRPLFIVEKQRLLIKKRDIRALQQRETPEEAGWHDLVSNGFIEYIDTEEEETTMI 679

Query: 2361 SMMINDLVNARQNAEEAYCETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSTMGKQ 2540
            SM INDLV AR N EEAY ETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS MGKQ
Sbjct: 680  SMTINDLVQARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 739

Query: 2541 AMGLYATNYHLRMDTLAYVLYYPQKPLVTTQAMAYLHFRQLPAGINAIVAIACYSGYNQE 2720
            AMG+Y TNY  RMDTLAYVLYYPQKPLVTT+AM +LHFRQLPAGINAIVAIACYSGYNQE
Sbjct: 740  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 799

Query: 2721 DSVIMNQSSIDRGFFRSLLFRSYRDEEKRMGALLKEDFGCPNRENTIGMRHGCYDKLDQD 2900
            DSVIMNQS+IDRGFFRSL FRSYRDEEK+MG L+KEDFG P+R NT+GMRHG YDKLD D
Sbjct: 800  DSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 859

Query: 2901 GLAAPGTRISGGDVIIGKTTSIPQDDSQGQ-ASRYTHCDHSTSLRHGESGMVDQVLLTTN 3077
            GLA PGTR+SG DVIIGKTT I QD++QGQ ASRYT  DHS SLRH E+G+VDQVLLTTN
Sbjct: 860  GLAPPGTRVSGEDVIIGKTTPIAQDEAQGQAASRYTRRDHSISLRHSENGIVDQVLLTTN 919

Query: 3078 ADGLRLVKVRIRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 3257
            ADGLR VKVR+RS+RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI
Sbjct: 920  ADGLRFVKVRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 979

Query: 3258 PSRMTIGQLIECIMGKVTTSVGREGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 3437
            PSRMTIGQLIECIMGKV   +G+EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT
Sbjct: 980  PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 1039

Query: 3438 GRRLSAMIFMGPTYYQRLKHMVEDKIQSRGRGPVQILTRQPVXXXXXXXXXXXXXXXXDC 3617
            GRRL+AMIF+GPTYYQRLKHMV+DKI SRGRGPVQILTRQP                 DC
Sbjct: 1040 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1099

Query: 3618 MIAHGAALFLKERLLEQSDVSKVHVCERCGLIAIANLKKKTTECRGCKRRSDIVQVCIPY 3797
            MIAHGAA FLKERL +QSD  +VHVCERCGLIAIANLKK + ECRGCK ++DIVQV IPY
Sbjct: 1100 MIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPY 1159

Query: 3798 ACKLLFQELMAMAIAPRMLTKELNTSKDQKK 3890
            ACKLLFQELMAMAIAPRMLTK++    DQKK
Sbjct: 1160 ACKLLFQELMAMAIAPRMLTKDVKPLNDQKK 1190


>gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
          Length = 1200

 Score = 1446 bits (3743), Expect = 0.0
 Identities = 709/872 (81%), Positives = 766/872 (87%), Gaps = 1/872 (0%)
 Frame = +3

Query: 1284 QVALDYIGKRGATVGVTREKRIKYAKEILQNEMLPHVAIGEYCETKKAYYFGYVIHRLLL 1463
            QVALDYIGKRG+TVGVT+EKRIKYAKEILQ EMLPHV +GEYCETKKAYYFGY+IHRLLL
Sbjct: 328  QVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLL 387

Query: 1464 CALGRRAEDDRDHYGNKRLDLAGPLFGGLFRTLFRKLARDMKSYVQKCVDSGKDFNLQFS 1643
            CALGRRAEDDRDHYGNKRLDLAGPL GGLFR LFRKL RD++SYVQKCVD+GKD NLQF 
Sbjct: 388  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFX 447

Query: 1644 INAKTITSGLKYSLATGNWGQANQVGTRAGISQVLNRLTYASTLSHLRRLNSPIGREGKL 1823
            I AKTITSGLKYSLATGNWGQAN  GTRAG+SQVLNRLTYASTLSHLRRL+SPIGREGKL
Sbjct: 448  IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLBSPIGREGKL 507

Query: 1824 VKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSVADPXXXXXXXXXXXXXXX 2003
             KPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGS A P               
Sbjct: 508  AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 567

Query: 2004 XSPADISQSTKIFVNGCWIGIHRNPKVLVKTLRQLRRQGDINIFVGIIRDIRLKEVRLRT 2183
             SPA I Q+TKIFVNG W+GIHRNP +LV TLR+LRR+ D+N  VG++RDIRLKE+R+ T
Sbjct: 568  ISPAVIPQATKIFVNGLWVGIHRNPDMLVSTLRRLRRRVDVNTEVGVVRDIRLKELRIYT 627

Query: 2184 DYGRCSRPLFIVEKQRLLIKKKDIQALQQKDTSGKG-WHRFLEKGLIEYIDTEEEEFTMI 2360
            DYGRCSRPLFIVEKQRLLIKKKD+QALQQ+++   G WH  + KG IEYIDTEEEE TMI
Sbjct: 628  DYGRCSRPLFIVEKQRLLIKKKDVQALQQRESPDDGGWHELVAKGFIEYIDTEEEETTMI 687

Query: 2361 SMMINDLVNARQNAEEAYCETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSTMGKQ 2540
            SM INDL++A+ N  EAY +TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS MGKQ
Sbjct: 688  SMTINDLLSAKVNPTEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 747

Query: 2541 AMGLYATNYHLRMDTLAYVLYYPQKPLVTTQAMAYLHFRQLPAGINAIVAIACYSGYNQE 2720
            AMG+Y TNY  RMDTLAYVLYYPQKPLVTT+AM +LHFRQLPAGINAIVAIACYSGYNQE
Sbjct: 748  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 807

Query: 2721 DSVIMNQSSIDRGFFRSLLFRSYRDEEKRMGALLKEDFGCPNRENTIGMRHGCYDKLDQD 2900
            DSVIMNQSSIDRGFFRSL FRSYRDEEK+MG L+KEDFG P+R NT+GMRHG YDKLD D
Sbjct: 808  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 867

Query: 2901 GLAAPGTRISGGDVIIGKTTSIPQDDSQGQASRYTHCDHSTSLRHGESGMVDQVLLTTNA 3080
            GLA PGTR SG DVIIGKTT I  DD+QGQA+RYT  DHSTSLRH E+GMVDQVLLTTNA
Sbjct: 868  GLAPPGTRCSGEDVIIGKTTPISPDDAQGQAARYTKRDHSTSLRHSETGMVDQVLLTTNA 927

Query: 3081 DGLRLVKVRIRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 3260
            DGLR VKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDIIVNPHAIP
Sbjct: 928  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIP 987

Query: 3261 SRMTIGQLIECIMGKVTTSVGREGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 3440
            SRMTIGQLIECIMGKV   +G+EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG
Sbjct: 988  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1047

Query: 3441 RRLSAMIFMGPTYYQRLKHMVEDKIQSRGRGPVQILTRQPVXXXXXXXXXXXXXXXXDCM 3620
            RRLS+MIF+GPTYYQRLKHMV+DKI SRGRGPVQILTRQP                 DCM
Sbjct: 1048 RRLSSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1107

Query: 3621 IAHGAALFLKERLLEQSDVSKVHVCERCGLIAIANLKKKTTECRGCKRRSDIVQVCIPYA 3800
            IAHGAA FLKERL +QSD  ++HVCE+CGLIAIANLKK + ECRGCK ++DIVQV IPYA
Sbjct: 1108 IAHGAAHFLKERLFDQSDAYRIHVCEQCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 1167

Query: 3801 CKLLFQELMAMAIAPRMLTKELNTSKDQKKGA 3896
            CKLLFQELM+MAIAPRMLTK++  SK+Q+K A
Sbjct: 1168 CKLLFQELMSMAIAPRMLTKDIKQSKEQRKKA 1199