BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Stemona21_contig00010829
         (1452 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29879.3| unnamed protein product [Vitis vinifera]              642   0.0  
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...   642   0.0  
emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]   630   e-178
ref|XP_006850181.1| hypothetical protein AMTR_s00022p00245030 [A...   618   e-174
ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I sub...   610   e-172
ref|XP_003559192.1| PREDICTED: DNA-directed RNA polymerase I sub...   604   e-170
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...   598   e-168
dbj|BAD35511.1| putative RNA polymerase A(I) large subunit [Oryz...   597   e-168
gb|EEE66008.1| hypothetical protein OsJ_21959 [Oryza sativa Japo...   597   e-168
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub...   590   e-166
gb|ACN85301.1| putative RNA polymerase A(I) large subunit [Oryza...   585   e-164
ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I sub...   583   e-164
gb|EOY09357.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma ca...   582   e-163
gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Th...   582   e-163
gb|EMS52925.1| DNA-directed RNA polymerase I subunit rpa1 [Triti...   580   e-163
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub...   580   e-163
gb|EOY09358.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma ca...   580   e-163
gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Th...   580   e-163
ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Me...   579   e-163
ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I sub...   578   e-162

>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score =  642 bits (1655), Expect = 0.0
 Identities = 330/516 (63%), Positives = 399/516 (77%), Gaps = 32/516 (6%)
 Frame = -1

Query: 1452 QKTVNVLYDSSKGFGKSDKET-SGIRQYLEKKDGILRQKIMGKRVNHACRSVISPDPYLA 1276
            Q+++NVL+D     G+  ++T SGI Q LEKK+G+ RQK+MGKRVN ACRSVISPDPYLA
Sbjct: 398  QQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLA 457

Query: 1275 VNEIGIPPYFAERLTYPERVTPWNVCKLRDAVINGT-----ATHYKDKDRIYKLQ-SRNM 1114
            VNEIGIPPYFA RLTYPE+VTPWNV KLRDA+ING      ATHY DK    KL  ++ M
Sbjct: 458  VNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNKKM 517

Query: 1113 RLAVARKLPTSQGVLTQTCKGPESEFEGKIVYRHLQDGDIVLVNRQPTLHKPSMMAHLVR 934
            R++++RKLP+S+GV+ Q  +  ++EFEGKIVYRHLQDGDIVLVNRQPTLHKPS+MAH+VR
Sbjct: 518  RISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVR 577

Query: 933  VLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANKQYIVPTSGDPI 754
            VLKGEKT+RMHYANCSTYNADFDGDEMNVHFPQDEISRAEA NIVNAN QYIVP+ GDPI
Sbjct: 578  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPI 637

Query: 753  RGLIQDHIVSAVLLTMKDRFLTCEEYHQLLHASCVPAAATSSLGNFGQKVSVLRASDDIQ 574
            RGLIQDHIVSAVLLT KD FLT E+Y+QLL++S + + + S +G  G+KVSVL + D++Q
Sbjct: 638  RGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGLSSGSGSFIGKPGKKVSVLDSEDEMQ 697

Query: 573  SSPPAIWKPKRLWTGKQVLSAILCHITKGRKPFTMVKDGRIPKEYFG------------- 433
               PAIWKP+ LW+GKQV++A+L HIT+GRKPFT  KDG+IP+EYFG             
Sbjct: 698  PLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKD 757

Query: 432  ------------KDYTERSLSIYNNEFIHGMIDKAQFGKYGLVHIVHELYGADTAGTLLS 289
                        K + E  L I+ NE + G+IDKAQF KYGLVH+V ELYG++TAG LLS
Sbjct: 758  PGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLS 817

Query: 288  VFSRLFTLFLQMHGFSCGVDDLLIVQDSDLERKRILEKSEVQSEEVHVRFIANASGDIDQ 109
            V SRLFT+FLQMHGF+CGVDDLLI  + D+ RK  L+KSE   E VH +FI +  G ID 
Sbjct: 818  VLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSNHGKIDP 877

Query: 108  MNLQKEIERTIRSNGESATARLDRMMSSALNLITSE 1
            + LQ E+E+ I SNGE+A  RLDRMM + LN +TS+
Sbjct: 878  VKLQVEVEKIILSNGEAAITRLDRMMKNELNELTSK 913


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score =  642 bits (1655), Expect = 0.0
 Identities = 330/516 (63%), Positives = 399/516 (77%), Gaps = 32/516 (6%)
 Frame = -1

Query: 1452 QKTVNVLYDSSKGFGKSDKET-SGIRQYLEKKDGILRQKIMGKRVNHACRSVISPDPYLA 1276
            Q+++NVL+D     G+  ++T SGI Q LEKK+G+ RQK+MGKRVN ACRSVISPDPYLA
Sbjct: 469  QQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLA 528

Query: 1275 VNEIGIPPYFAERLTYPERVTPWNVCKLRDAVINGT-----ATHYKDKDRIYKLQ-SRNM 1114
            VNEIGIPPYFA RLTYPE+VTPWNV KLRDA+ING      ATHY DK    KL  ++ M
Sbjct: 529  VNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNKKM 588

Query: 1113 RLAVARKLPTSQGVLTQTCKGPESEFEGKIVYRHLQDGDIVLVNRQPTLHKPSMMAHLVR 934
            R++++RKLP+S+GV+ Q  +  ++EFEGKIVYRHLQDGDIVLVNRQPTLHKPS+MAH+VR
Sbjct: 589  RISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVR 648

Query: 933  VLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANKQYIVPTSGDPI 754
            VLKGEKT+RMHYANCSTYNADFDGDEMNVHFPQDEISRAEA NIVNAN QYIVP+ GDPI
Sbjct: 649  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPI 708

Query: 753  RGLIQDHIVSAVLLTMKDRFLTCEEYHQLLHASCVPAAATSSLGNFGQKVSVLRASDDIQ 574
            RGLIQDHIVSAVLLT KD FLT E+Y+QLL++S + + + S +G  G+KVSVL + D++Q
Sbjct: 709  RGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGLSSGSGSFIGKPGKKVSVLDSEDEMQ 768

Query: 573  SSPPAIWKPKRLWTGKQVLSAILCHITKGRKPFTMVKDGRIPKEYFG------------- 433
               PAIWKP+ LW+GKQV++A+L HIT+GRKPFT  KDG+IP+EYFG             
Sbjct: 769  PLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKD 828

Query: 432  ------------KDYTERSLSIYNNEFIHGMIDKAQFGKYGLVHIVHELYGADTAGTLLS 289
                        K + E  L I+ NE + G+IDKAQF KYGLVH+V ELYG++TAG LLS
Sbjct: 829  PGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLS 888

Query: 288  VFSRLFTLFLQMHGFSCGVDDLLIVQDSDLERKRILEKSEVQSEEVHVRFIANASGDIDQ 109
            V SRLFT+FLQMHGF+CGVDDLLI  + D+ RK  L+KSE   E VH +FI +  G ID 
Sbjct: 889  VLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSNHGKIDP 948

Query: 108  MNLQKEIERTIRSNGESATARLDRMMSSALNLITSE 1
            + LQ E+E+ I SNGE+A  RLDRMM + LN +TS+
Sbjct: 949  VKLQVEVEKIILSNGEAAITRLDRMMKNELNELTSK 984


>emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]
          Length = 1350

 Score =  630 bits (1626), Expect = e-178
 Identities = 330/534 (61%), Positives = 399/534 (74%), Gaps = 50/534 (9%)
 Frame = -1

Query: 1452 QKTVNVLYDSSKGFGKSDKET-SGIRQYLEKKDGILRQKIMGKRVNHACRSVISPDPYLA 1276
            Q+++NVL+D     G+  ++T SGI Q LEKK+G+ RQK+MGKRVN ACRSVISPDPYLA
Sbjct: 517  QQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLA 576

Query: 1275 VNEIGIPPYFAERLTYPERVTPWNVCKLRDAVINGT-----ATHYKDKDRIYKLQ-SRNM 1114
            VNEIGIPPYFA RLTYPE+VTPWNV KLRDA+ING      ATHY DK    KL  ++ M
Sbjct: 577  VNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNKKM 636

Query: 1113 RLAVARKLPTSQGVLTQTCKGPESEFEGKIVYRHLQDGDIVLVNRQPTLHKPSMMAHLVR 934
            R++++RKLP+S+GV+ Q  +  ++EFEGKIVYRHLQDGDIVLVNRQPTLHKPS+MAH+VR
Sbjct: 637  RISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVR 696

Query: 933  VLKGEKTIRMHYANC------------------STYNADFDGDEMNVHFPQDEISRAEAL 808
            VLKGEKT+RMHYANC                  STYNADFDGDEMNVHFPQDEISRAEA 
Sbjct: 697  VLKGEKTLRMHYANCRVESEHISMLDLDDCSDSSTYNADFDGDEMNVHFPQDEISRAEAY 756

Query: 807  NIVNANKQYIVPTSGDPIRGLIQDHIVSAVLLTMKDRFLTCEEYHQLLHASCVPAAATSS 628
            NIVNAN QYIVP+ GDPIRGLIQDHIVSAVLLT KD FLT E+Y+QLL++S + + + S 
Sbjct: 757  NIVNANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGLSSGSGSF 816

Query: 627  LGNFGQKVSVLRASDDIQSSPPAIWKPKRLWTGKQVLSAILCHITKGRKPFTMVKDGRIP 448
            +G  G+KVSVL + D++Q   PAIWKP+ LW+GKQV++A+L HIT+GRKPFT  KDG+IP
Sbjct: 817  IGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIP 876

Query: 447  KEYFG-------------------------KDYTERSLSIYNNEFIHGMIDKAQFGKYGL 343
            +EYFG                         K + E  L I+ NE + G+IDKAQF KYGL
Sbjct: 877  REYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGL 936

Query: 342  VHIVHELYGADTAGTLLSVFSRLFTLFLQMHGFSCGVDDLLIVQDSDLERKRILEKSEVQ 163
            VH+V ELYG++TAG LLSV SRLFT+FLQMHGF+CGVDDLLI  + D+ RK  L+KSE  
Sbjct: 937  VHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENI 996

Query: 162  SEEVHVRFIANASGDIDQMNLQKEIERTIRSNGESATARLDRMMSSALNLITSE 1
             E VH +FI +  G ID + LQ E+E+ I SNGE+A  RLDRMM + LN +TS+
Sbjct: 997  GELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKNELNELTSK 1050


>ref|XP_006850181.1| hypothetical protein AMTR_s00022p00245030 [Amborella trichopoda]
            gi|548853779|gb|ERN11762.1| hypothetical protein
            AMTR_s00022p00245030 [Amborella trichopoda]
          Length = 1600

 Score =  618 bits (1593), Expect = e-174
 Identities = 308/501 (61%), Positives = 383/501 (76%), Gaps = 17/501 (3%)
 Frame = -1

Query: 1452 QKTVNVLYDSSKGFGKSDKETSGIRQYLEKKDGILRQKIMGKRVNHACRSVISPDPYLAV 1273
            Q  V++L+DS K  GK  +  SGIRQ LEKK+G+ RQ +MGKRVN ACRSVISPDP+LAV
Sbjct: 326  QTNVDLLFDSDKASGKKGELESGIRQLLEKKEGLFRQNMMGKRVNFACRSVISPDPFLAV 385

Query: 1272 NEIGIPPYFAERLTYPERVTPWNVCKLRDAVINGTATH-----YKDKD---------RIY 1135
            NEIGIPPYFA++LTYPE+VTPWN  +LR AV+NG   H     Y D+             
Sbjct: 386  NEIGIPPYFAKKLTYPEKVTPWNAERLRQAVLNGPEIHPGATLYHDEQGNTNLADNLNDS 445

Query: 1134 KLQSRNMRLAVARKLPTSQGVLTQTC--KGPESEFEGKIVYRHLQDGDIVLVNRQPTLHK 961
            K ++ N R ++A+KL ++ G ++     KG  S FEGK+VYRH+QDGDIVLVNRQPTLHK
Sbjct: 446  KYKNENRRNSIAKKLLSTPGAVSTDVSGKGFNSNFEGKVVYRHIQDGDIVLVNRQPTLHK 505

Query: 960  PSMMAHLVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANKQY 781
            PSMMAH+ R+LKGEKT+RMHYANCS+YNADFDGDEMNVHFPQDEI+RAEA NIVNAN+QY
Sbjct: 506  PSMMAHVARILKGEKTLRMHYANCSSYNADFDGDEMNVHFPQDEIARAEAYNIVNANEQY 565

Query: 780  IVPTSGDPIRGLIQDHIVSAVLLTMKDRFLTCEEYHQLLHASCVPAAATS-SLGNFGQKV 604
            IVPTSG+PIRGLIQDHIVSAVLLT KD FLT EEYH LL+++CV   A     GN  +K+
Sbjct: 566  IVPTSGEPIRGLIQDHIVSAVLLTKKDTFLTQEEYHHLLYSACVSTVAPDFKHGNLSKKI 625

Query: 603  SVLRASDDIQSSPPAIWKPKRLWTGKQVLSAILCHITKGRKPFTMVKDGRIPKEYFGKDY 424
            S++++ ++I+   PAIWKPK LWTGKQV+S IL H+T+G+ PFT+ + GRIP  YFGK  
Sbjct: 626  SLVKSDEEIRPLLPAIWKPKPLWTGKQVISTILDHVTRGQPPFTVKRAGRIPAGYFGKKN 685

Query: 423  TERSLSIYNNEFIHGMIDKAQFGKYGLVHIVHELYGADTAGTLLSVFSRLFTLFLQMHGF 244
             E  + ++ NE +HG+IDKAQFGK+GLVH VHELYGA  AG L SVF+RLFT +LQMHGF
Sbjct: 686  GEYKVLVHKNELVHGVIDKAQFGKFGLVHAVHELYGASAAGRLFSVFTRLFTAYLQMHGF 745

Query: 243  SCGVDDLLIVQDSDLERKRILEKSEVQSEEVHVRFIANASGDIDQMNLQKEIERTIRSNG 64
            +CGVDDLL+ Q ++++R+R L++SE   + VH  FI     ++D + +Q  IE+ +R  G
Sbjct: 746  TCGVDDLLVRQCAEMDRRRKLDESETIGDHVHSWFIGAKDAEMDPIRMQAAIEKLVRGKG 805

Query: 63   ESATARLDRMMSSALNLITSE 1
            ESA ARLDRMMSSALN +TSE
Sbjct: 806  ESAIARLDRMMSSALNRLTSE 826


>ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Setaria
            italica]
          Length = 1682

 Score =  610 bits (1572), Expect = e-172
 Identities = 323/504 (64%), Positives = 381/504 (75%), Gaps = 20/504 (3%)
 Frame = -1

Query: 1452 QKTVNVLYDSSKGFGKSDKETSGIRQYLEKKDGILRQKIMGKRVNHACRSVISPDPYLAV 1273
            Q++VNVLYDSSKG  KS+K   GIRQ LEKK+GILRQK+MGKRVN+ACRSVISPDPYLAV
Sbjct: 409  QRSVNVLYDSSKGIVKSEKNAHGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAV 468

Query: 1272 NEIGIPPYFAERLTYPERVTPWNVCKLRDAVINGT-----ATHYKDKDRIYKLQSRNM-R 1111
            NEIGIPP FA RLTYPE+VTPWN  KL++AV NG      ATHY+D   IYKLQ+    R
Sbjct: 469  NEIGIPPVFATRLTYPEKVTPWNAKKLQEAVRNGADIHPGATHYRDNSNIYKLQAAPAKR 528

Query: 1110 LAVARKLPTSQGVLTQTCKGPESEFEGKIVYRHLQDGDIVLVNRQPTLHKPSMMAHLVRV 931
             A+A+ LP S+G ++Q  K P  EFE K+VYRHLQDGDIVLVNRQPTLHKPSMMAH VRV
Sbjct: 529  RAIAKMLPASRGSISQPGKDPNCEFESKVVYRHLQDGDIVLVNRQPTLHKPSMMAHFVRV 588

Query: 930  LKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANKQYIVPTSGDPIR 751
            L GEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEA+NIV+ANKQYI P SGD +R
Sbjct: 589  LPGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAMNIVDANKQYIGPRSGDAVR 648

Query: 750  GLIQDHIVSAVLLTMKDRFLTCEEYHQLLHASCVPAAATSSLG--NFGQKVSVLRASDDI 577
            GLIQDHIV AVLLT +D  L+ EEY QL++ SCVP    S+ G    G KVS ++  D +
Sbjct: 649  GLIQDHIVGAVLLTKQDTLLSREEYSQLVYGSCVP----SNWGPRQPGIKVSAIKDDDAL 704

Query: 576  QSSPPAIWKPKRLWTGKQVLSAILCHITKGRKPFTMVKDGRIPKEY-----FGKDYTERS 412
                PAI KPK LWTGKQV++ IL H+TKGR PFT+ + G+I +E+     F +  +ER 
Sbjct: 705  GFVLPAILKPKPLWTGKQVITTILNHLTKGRSPFTVEQKGKISEEHLTPKKFEESESERK 764

Query: 411  LS-------IYNNEFIHGMIDKAQFGKYGLVHIVHELYGADTAGTLLSVFSRLFTLFLQM 253
            ++       I NNE I GMIDKAQFG+YG+VH VHELYGADTAG LLS FSRLFTLFLQ 
Sbjct: 765  IAISELVLYIKNNELIKGMIDKAQFGQYGIVHTVHELYGADTAGILLSTFSRLFTLFLQF 824

Query: 252  HGFSCGVDDLLIVQDSDLERKRILEKSEVQSEEVHVRFIANASGDIDQMNLQKEIERTIR 73
            HGF+CGVDDLL+ Q +D  R+ I+ +S+  SE+ H  FI       D   LQ E+E+ IR
Sbjct: 825  HGFTCGVDDLLLCQKADEARRSIISESDKYSEKAHGTFIKTGK---DGEELQMEVEKVIR 881

Query: 72   SNGESATARLDRMMSSALNLITSE 1
             +GESAT  +DR +S+AL+ ITS+
Sbjct: 882  RDGESATVNMDREISNALSNITSD 905


>ref|XP_003559192.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like
            [Brachypodium distachyon]
          Length = 1868

 Score =  604 bits (1558), Expect = e-170
 Identities = 313/501 (62%), Positives = 380/501 (75%), Gaps = 17/501 (3%)
 Frame = -1

Query: 1452 QKTVNVLYDSSKGFGKSDKETSGIRQYLEKKDGILRQKIMGKRVNHACRSVISPDPYLAV 1273
            Q +VN+ YDSSKGFG  D + +GIRQ L+KK G++RQK+MGKRVNH+CR+VISPDP+LAV
Sbjct: 606  QTSVNLFYDSSKGFGNGDGDGNGIRQLLDKKGGVIRQKMMGKRVNHSCRTVISPDPFLAV 665

Query: 1272 NEIGIPPYFAERLTYPERVTPWNVCKLRDAVINGT-----ATHYKDKDRIYKLQS-RNMR 1111
            NEIGIPP  A ++TYPE V P N  KL++A+ NG      ATHYK    +YKLQ  R+ R
Sbjct: 666  NEIGIPPQAALKMTYPENVMPCNAKKLQEAINNGCGIHPGATHYKVNKNMYKLQDDRSKR 725

Query: 1110 LAVARKLPTSQGVLTQTCKGPESEFEGKIVYRHLQDGDIVLVNRQPTLHKPSMMAHLVRV 931
             A+A+ LP S+G ++Q  K P+ EFE K+VYRHLQDGDIVLVNRQPTLHKPSMMAH VRV
Sbjct: 726  RAIAKMLPASRGSISQPGKDPKCEFESKVVYRHLQDGDIVLVNRQPTLHKPSMMAHFVRV 785

Query: 930  LKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANKQYIVPTSGDPIR 751
            L GEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEA+NIV+ANKQYI P SGD +R
Sbjct: 786  LPGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAMNIVDANKQYIGPRSGDAVR 845

Query: 750  GLIQDHIVSAVLLTMKDRFLTCEEYHQLLHASCVPAAATSSLGNFGQKVSVLRASDDIQS 571
            GLIQDHIVSAVLLT  D F++ EEY QL++ SCV  ++T S    G++VSV++  D ++ 
Sbjct: 846  GLIQDHIVSAVLLTKLDTFISREEYSQLVYGSCV--SSTRSPCQSGKRVSVMKDGDILEL 903

Query: 570  SPPAIWKPKRLWTGKQVLSAILCHITKGRKPFTMVKDGRIPKEYF-----------GKDY 424
             PPAI KPK LWTGKQV++ IL H+TKG  PFT+ K G+IP +Y             KD 
Sbjct: 904  LPPAILKPKPLWTGKQVITTILNHLTKGHPPFTVEKKGKIPVKYLIPKERHGDKDNAKD- 962

Query: 423  TERSLSIYNNEFIHGMIDKAQFGKYGLVHIVHELYGADTAGTLLSVFSRLFTLFLQMHGF 244
            +E+ L I++NE I GMIDK QFG YG+VH V+ELYGA+TAG LLS+FSRLFTLFLQ+HGF
Sbjct: 963  SEQVLYIHDNELIKGMIDKDQFGNYGIVHTVYELYGAETAGRLLSIFSRLFTLFLQLHGF 1022

Query: 243  SCGVDDLLIVQDSDLERKRILEKSEVQSEEVHVRFIANASGDIDQMNLQKEIERTIRSNG 64
            +CG+DDLL+ Q+SD +R   L  SE  SEEVH +F      D D + LQ E+E+ +R  G
Sbjct: 1023 TCGIDDLLLFQESDKQRTETLMTSEKCSEEVHRKFTCAGDYDEDPLKLQMEVEKVVRRIG 1082

Query: 63   ESATARLDRMMSSALNLITSE 1
            ESAT  LD+MM SALN + SE
Sbjct: 1083 ESATDTLDKMMLSALNGLQSE 1103


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score =  598 bits (1541), Expect = e-168
 Identities = 314/515 (60%), Positives = 382/515 (74%), Gaps = 32/515 (6%)
 Frame = -1

Query: 1452 QKTVNVLYDSSKGFGKSDKETS-GIRQYLEKKDGILRQKIMGKRVNHACRSVISPDPYLA 1276
            Q+++N L+DS    G   +E + GI Q LEKK+G+ RQK+MGKRVN+ACRSVISPDPY+ 
Sbjct: 397  QQSINTLFDSKTAKGPGQREGAPGICQLLEKKEGLFRQKMMGKRVNYACRSVISPDPYIG 456

Query: 1275 VNEIGIPPYFAERLTYPERVTPWNVCKLRDAVINGT-----ATHYKDKDRIYKLQ-SRNM 1114
            VNEIGIPP FA +LTYPERVTPWN+ KLR+AVING+     ATHY DK  I KL  +R  
Sbjct: 457  VNEIGIPPCFAVKLTYPERVTPWNIAKLRNAVINGSECHPGATHYVDKLSINKLPPARKA 516

Query: 1113 RLAVARKLPTSQGVLTQTCKGPESEFEGKIVYRHLQDGDIVLVNRQPTLHKPSMMAHLVR 934
            R++++RKLP+S+G +TQ  KG E EFEGKIVYRHLQDGD+VLVNRQPTLHKPS+MAH+VR
Sbjct: 517  RISISRKLPSSRGAVTQAGKGSECEFEGKIVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 576

Query: 933  VLKGEKTIRMHYANCS-TYNADFDGDEMNVHFPQDEISRAEALNIVNANKQYIVPTSGDP 757
            VLKGEKT+RMHYANCS TYNADFDGDEMNVHFPQDE+SRAEA NIVNAN Q++ P++G+P
Sbjct: 577  VLKGEKTLRMHYANCSITYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQFVRPSNGEP 636

Query: 756  IRGLIQDHIVSAVLLTMKDRFLTCEEYHQLLHASCVPAAATSSL-GNFGQKVSVLRASDD 580
            +RGLIQDHIVSAVLLT KD FL+ +E++QLL++S V     +S  G  GQKV   R+ D+
Sbjct: 637  LRGLIQDHIVSAVLLTKKDTFLSQDEFNQLLYSSGVSTVGPNSFHGRPGQKVLWSRSEDE 696

Query: 579  IQSSPPAIWKPKRLWTGKQVLSAILCHITKGRKPFTMVKDGRIPKEYF------------ 436
            IQ+ PPAIWKPK LWTGKQV++AIL HIT    PFT+ KD +IP  +F            
Sbjct: 697  IQTLPPAIWKPKPLWTGKQVITAILNHITSDHPPFTVEKDAKIPSNFFKSRANEDKPCQE 756

Query: 435  ---------GKDYTERSLSIYNNEFIHGMIDKAQFGKYGLVHIVHELYGADTAGTLLSVF 283
                      K+  E  + +Y NE + G+IDK QFG+YGLVH VHEL G+ TAG LLSV 
Sbjct: 757  EKSDKDAPAEKEPDEEKMLVYKNELVRGVIDKGQFGEYGLVHTVHELLGSHTAGILLSVL 816

Query: 282  SRLFTLFLQMHGFSCGVDDLLIVQDSDLERKRILEKSEVQSEEVHVRFIA--NASGDIDQ 109
            SRLFT +LQMHGF+CGVDDLLI+ + D ERK+ LE  E   E VH  FI   +    ID 
Sbjct: 817  SRLFTAYLQMHGFTCGVDDLLILTNKDEERKKQLEWCEKSGEAVHRNFIGIKDEKIKIDP 876

Query: 108  MNLQKEIERTIRSNGESATARLDRMMSSALNLITS 4
            + +Q  IE+TIRS+G+SA A LDR MS+ LN  TS
Sbjct: 877  VAMQLNIEKTIRSDGDSALAYLDRQMSNELNTKTS 911


>dbj|BAD35511.1| putative RNA polymerase A(I) large subunit [Oryza sativa Japonica
            Group]
          Length = 1748

 Score =  597 bits (1540), Expect = e-168
 Identities = 298/455 (65%), Positives = 360/455 (79%), Gaps = 17/455 (3%)
 Frame = -1

Query: 1452 QKTVNVLYDSSKGFGKSDKETSGIRQYLEKKDGILRQKIMGKRVNHACRSVISPDPYLAV 1273
            Q+ VNVLYDSSKG  K++K  +GIRQ LEKK+GILRQK+MGKRVN+ACRSVISPDPYLAV
Sbjct: 399  QRNVNVLYDSSKGLSKNEKNANGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAV 458

Query: 1272 NEIGIPPYFAERLTYPERVTPWNVCKLRDAVINGT-----ATHYKDKDRIYKLQSRN-MR 1111
            NEIGIPP FA RLTYPE+VTPWN  KL++A+ NG      ATHY+D + +YKLQ+    R
Sbjct: 459  NEIGIPPVFATRLTYPEKVTPWNARKLQEAINNGADIHPGATHYRDNNNMYKLQAAPPKR 518

Query: 1110 LAVARKLPTSQGVLTQTCKGPESEFEGKIVYRHLQDGDIVLVNRQPTLHKPSMMAHLVRV 931
             A+A+ LP S+G ++Q  K P+ EFE K+VYRHLQDGD+VLVNRQPTLHKPSMMAH+VRV
Sbjct: 519  RAIAKMLPASRGSISQPGKDPKCEFESKVVYRHLQDGDVVLVNRQPTLHKPSMMAHVVRV 578

Query: 930  LKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANKQYIVPTSGDPIR 751
            L GEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEA+NIV+ANKQYI P SGD +R
Sbjct: 579  LPGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAINIVDANKQYIGPRSGDAVR 638

Query: 750  GLIQDHIVSAVLLTMKDRFLTCEEYHQLLHASCVPAAATSSLGNFGQKVSVLRASDDIQS 571
            GLIQDHI+ AVLLT  D FL+ EEY+QL++ S +  ++T   G FG+K+S++   D ++ 
Sbjct: 639  GLIQDHIIGAVLLTKLDTFLSREEYNQLVYGSVL--SSTRRSGQFGKKISIIMDDDALEP 696

Query: 570  SPPAIWKPKRLWTGKQVLSAILCHITKGRKPFTMVKDGRIPKEYFGKDY----------- 424
             PPAIWKPK LWTGKQV++ IL H+TKGR PFT+ K GRI KEY   +            
Sbjct: 697  VPPAIWKPKPLWTGKQVITTILNHVTKGRPPFTVEKKGRIEKEYLIPEERNGDKVKTINP 756

Query: 423  TERSLSIYNNEFIHGMIDKAQFGKYGLVHIVHELYGADTAGTLLSVFSRLFTLFLQMHGF 244
            +E+ L +++NE I GMIDKAQFG YG+VH VHELYG +TAG LLS FSRLFT+ LQ+HGF
Sbjct: 757  SEQVLYVHDNELIKGMIDKAQFGNYGIVHTVHELYGPETAGVLLSSFSRLFTMVLQLHGF 816

Query: 243  SCGVDDLLIVQDSDLERKRILEKSEVQSEEVHVRF 139
            +CGVDDLL+ Q+SD+ R+ IL KSE  S+ VH+ F
Sbjct: 817  TCGVDDLLLSQESDMTREEILGKSEKHSKIVHINF 851


>gb|EEE66008.1| hypothetical protein OsJ_21959 [Oryza sativa Japonica Group]
          Length = 994

 Score =  597 bits (1540), Expect = e-168
 Identities = 298/455 (65%), Positives = 360/455 (79%), Gaps = 17/455 (3%)
 Frame = -1

Query: 1452 QKTVNVLYDSSKGFGKSDKETSGIRQYLEKKDGILRQKIMGKRVNHACRSVISPDPYLAV 1273
            Q+ VNVLYDSSKG  K++K  +GIRQ LEKK+GILRQK+MGKRVN+ACRSVISPDPYLAV
Sbjct: 181  QRNVNVLYDSSKGLSKNEKNANGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAV 240

Query: 1272 NEIGIPPYFAERLTYPERVTPWNVCKLRDAVINGT-----ATHYKDKDRIYKLQSRN-MR 1111
            NEIGIPP FA RLTYPE+VTPWN  KL++A+ NG      ATHY+D + +YKLQ+    R
Sbjct: 241  NEIGIPPVFATRLTYPEKVTPWNARKLQEAINNGADIHPGATHYRDNNNMYKLQAAPPKR 300

Query: 1110 LAVARKLPTSQGVLTQTCKGPESEFEGKIVYRHLQDGDIVLVNRQPTLHKPSMMAHLVRV 931
             A+A+ LP S+G ++Q  K P+ EFE K+VYRHLQDGD+VLVNRQPTLHKPSMMAH+VRV
Sbjct: 301  RAIAKMLPASRGSISQPGKDPKCEFESKVVYRHLQDGDVVLVNRQPTLHKPSMMAHVVRV 360

Query: 930  LKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANKQYIVPTSGDPIR 751
            L GEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEA+NIV+ANKQYI P SGD +R
Sbjct: 361  LPGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAINIVDANKQYIGPRSGDAVR 420

Query: 750  GLIQDHIVSAVLLTMKDRFLTCEEYHQLLHASCVPAAATSSLGNFGQKVSVLRASDDIQS 571
            GLIQDHI+ AVLLT  D FL+ EEY+QL++ S +  ++T   G FG+K+S++   D ++ 
Sbjct: 421  GLIQDHIIGAVLLTKLDTFLSREEYNQLVYGSVL--SSTRRSGQFGKKISIIMDDDALEP 478

Query: 570  SPPAIWKPKRLWTGKQVLSAILCHITKGRKPFTMVKDGRIPKEYFGKDY----------- 424
             PPAIWKPK LWTGKQV++ IL H+TKGR PFT+ K GRI KEY   +            
Sbjct: 479  VPPAIWKPKPLWTGKQVITTILNHVTKGRPPFTVEKKGRIEKEYLIPEERNGDKVKTINP 538

Query: 423  TERSLSIYNNEFIHGMIDKAQFGKYGLVHIVHELYGADTAGTLLSVFSRLFTLFLQMHGF 244
            +E+ L +++NE I GMIDKAQFG YG+VH VHELYG +TAG LLS FSRLFT+ LQ+HGF
Sbjct: 539  SEQVLYVHDNELIKGMIDKAQFGNYGIVHTVHELYGPETAGVLLSSFSRLFTMVLQLHGF 598

Query: 243  SCGVDDLLIVQDSDLERKRILEKSEVQSEEVHVRF 139
            +CGVDDLL+ Q+SD+ R+ IL KSE  S+ VH+ F
Sbjct: 599  TCGVDDLLLSQESDMTREEILGKSEKHSKIVHINF 633


>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
            max]
          Length = 1651

 Score =  590 bits (1520), Expect = e-166
 Identities = 310/508 (61%), Positives = 375/508 (73%), Gaps = 25/508 (4%)
 Frame = -1

Query: 1452 QKTVNVLYDSSKGFGKSDKETSGIRQYLEKKDGILRQKIMGKRVNHACRSVISPDPYLAV 1273
            Q++VN+L+D+    GK D  T GI Q LEKK+GI RQK+MGKRVN ACRSVISPDPYLAV
Sbjct: 389  QQSVNMLFDNKTASGKRDVAT-GICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAV 447

Query: 1272 NEIGIPPYFAERLTYPERVTPWNVCKLRDAVINGT-----ATHYKDKDRIYKLQSRNMRL 1108
            NEIGIPPYFA RL+YPERVTPWNV KLR+A++NG      ATHY DK  I KL  +   L
Sbjct: 448  NEIGIPPYFALRLSYPERVTPWNVVKLRNAILNGPESHPGATHYADKVSIVKLPPKGKLL 507

Query: 1107 AV-ARKLPTSQGVLTQTCKGPESEFEGKIVYRHLQDGDIVLVNRQPTLHKPSMMAHLVRV 931
            ++ +RKLPTS+GV+    K  + EFEGK+VYRHL+DGD+VLVNRQPTLHKPS+MAH+VRV
Sbjct: 508  SLTSRKLPTSRGVILHQGKISDHEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHIVRV 567

Query: 930  LKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANKQYIVPTSGDPIR 751
            LKGEKT+RMHYANCSTYNADFDGDE+NVHFPQDEISRAEA NIVNAN QY+ PTSGDPIR
Sbjct: 568  LKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIR 627

Query: 750  GLIQDHIVSAVLLTMKDRFLTCEEYHQLLHASCVPAAATSSL-GNFGQKVSVLRASDDIQ 574
             LIQDHIVSA LLT KD FL+ EE++QLL++S V  A   S  G  GQKV +  +  ++ 
Sbjct: 628  ALIQDHIVSAALLTKKDTFLSYEEFNQLLYSSGVSMAGLGSFYGKHGQKVFISNSESEMF 687

Query: 573  SSPPAIWKPKRLWTGKQVLSAILCHITKGRKPFTMVKDGRIPKEYF------GKDYTERS 412
              PPAIWKP+ LWTGKQV+SA+L +IT+G  PFT  K+ +IP  +F      GK YTE +
Sbjct: 688  LFPPAIWKPEPLWTGKQVISALLYYITRGSPPFTAEKNAKIPSNFFKTQIRKGKRYTEDT 747

Query: 411  -----------LSIYNNEFIHGMIDKAQFGKYGLVHIVHELYGADTAGTLLSVFSRLFTL 265
                       L IY N+ + G++DKAQFG YG++H V ELYG++ AG LLS  SRLFT 
Sbjct: 748  SKKKDKPDEDKLLIYKNDLVRGVVDKAQFGDYGMIHTVQELYGSNVAGNLLSALSRLFTT 807

Query: 264  FLQMHGFSCGVDDLLIVQDSDLERKRILEKSEVQSEEVHVRFIANASGD-IDQMNLQKEI 88
            FLQMHGF+CGVDDL++ +  D+ER   L+  E+  + VH  FI   + D ID + LQ  I
Sbjct: 808  FLQMHGFTCGVDDLMLTEGKDVERMNQLKSCEIIGDSVHREFIGVKNSDNIDPVTLQLNI 867

Query: 87   ERTIRSNGESATARLDRMMSSALNLITS 4
            E+ IRSNGE+A   LDR M+S LN  TS
Sbjct: 868  EKKIRSNGEAALT-LDRKMTSNLNSRTS 894


>gb|ACN85301.1| putative RNA polymerase A(I) large subunit [Oryza coarctata]
          Length = 1830

 Score =  585 bits (1508), Expect = e-164
 Identities = 304/485 (62%), Positives = 359/485 (74%), Gaps = 50/485 (10%)
 Frame = -1

Query: 1452 QKTVNVLYDSSKGFGKSDKETSGIRQYLEKKDGILRQKIMGKRVNHACRSVISPDPYLAV 1273
            Q++VNVLYDSSKG  KS+K  +GIRQ LEKK+GILRQK+MGKRVN+ACRSVISPDPYLAV
Sbjct: 390  QRSVNVLYDSSKGLAKSEKNANGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLAV 449

Query: 1272 NEIGIPPYFAERLTYPERVTPWNVCKLRDAVINGT-----ATHYKDKDRIYKLQSRN-MR 1111
            NEIGIPP FA RLTYPE+VTPWN  KL++A+ NG      ATHY+D + +YKLQ+    R
Sbjct: 450  NEIGIPPVFATRLTYPEKVTPWNARKLQEAINNGADIHPGATHYRDNNNMYKLQAAPPKR 509

Query: 1110 LAVARKLPTSQGVLTQTCKGPESEFEGKIVYRHLQDGDIVLVNRQPTLHKPSMMAHLVRV 931
             A+A+ LP S+G ++Q  K P+ EFE K+VYRHLQDGDIVLVNRQPTLHKPSMMAH VRV
Sbjct: 510  RAIAKMLPASRGSISQPGKDPKCEFESKVVYRHLQDGDIVLVNRQPTLHKPSMMAHFVRV 569

Query: 930  LKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANKQYIVPTSGDPIR 751
            L GEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEA+NIV+ANKQYI P SGD +R
Sbjct: 570  LPGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAINIVDANKQYIGPRSGDAVR 629

Query: 750  GLIQDHIVSAVLLTMKDRFLTCEEYHQLLHASCVPAAATSSLGNFGQKVSVLRASDDIQS 571
            GLIQDHIV AVLLT  D FL+ EEY+QL++ SCV ++A  S G FG+K+S++   D ++ 
Sbjct: 630  GLIQDHIVGAVLLTKLDTFLSREEYNQLVYGSCVLSSARRS-GQFGKKISIIMDDDVLEP 688

Query: 570  SPPAIWKPKRLWTGKQVLSAILCHITKGRKPFTMVKDGRIPKEYF-------GKDYT--- 421
             PPAIWKPK LWTGKQV++ IL H+TKG  PFT+ + G+I KEY         KD T   
Sbjct: 689  VPPAIWKPKPLWTGKQVITTILNHVTKGHPPFTVEQQGKISKEYLIPKKCDGAKDKTRVP 748

Query: 420  -ERSLSIYNNEFIHGMIDKAQFGKYGLVHIVHELYGADTAGTLLSVFSRLFT-------- 268
             E  L +++NE I GMIDKAQFGKYG+VH VHELYG +TAG LLS FSRLFT        
Sbjct: 749  SELVLYVHDNELIKGMIDKAQFGKYGIVHTVHELYGPETAGVLLSAFSRLFTIVLQIRGF 808

Query: 267  -------------------------LFLQMHGFSCGVDDLLIVQDSDLERKRILEKSEVQ 163
                                     +F Q+HGF+CGVDDLL+ Q+SD  RK IL  SE +
Sbjct: 809  VELGITNSKKSWIQSCAKRGELRTFIFFQLHGFTCGVDDLLLCQESDKLRKEILAGSEKE 868

Query: 162  SEEVH 148
            S+ VH
Sbjct: 869  SKRVH 873


>ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            tuberosum]
          Length = 1675

 Score =  583 bits (1503), Expect = e-164
 Identities = 305/501 (60%), Positives = 371/501 (74%), Gaps = 23/501 (4%)
 Frame = -1

Query: 1452 QKTVNVLYDSSKGFGKSDKET-SGIRQYLEKKDGILRQKIMGKRVNHACRSVISPDPYLA 1276
            Q++VNVL+DS    G   K+  SGI Q LEKK+GI RQK+MGKRVN ACRSVISPDPYL+
Sbjct: 405  QQSVNVLFDSKTASGPGQKDVGSGICQMLEKKEGIFRQKMMGKRVNFACRSVISPDPYLS 464

Query: 1275 VNEIGIPPYFAERLTYPERVTPWNVCKLRDAVINGTATH-----YKDKDRIYKLQS-RNM 1114
            VNEIGIPPYFA RLTYPER+TPWN  K+RDAVING   H     + D+    KL S + M
Sbjct: 465  VNEIGIPPYFALRLTYPERLTPWNAVKMRDAVINGPENHPGAVSFADRIATVKLPSNKKM 524

Query: 1113 RLAVARKLPTSQGVLTQTCKGPESEFEGKIVYRHLQDGDIVLVNRQPTLHKPSMMAHLVR 934
            R+A++RKLP+S+G +TQ+ +  E EFEGK+VYRHLQDGD+VLVNRQPTLHKPS+MAH+VR
Sbjct: 525  RVAISRKLPSSRGAVTQSGRNNEYEFEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 584

Query: 933  VLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANKQYIVPTSGDPI 754
            VLKGEKT+RMHYANCSTYNADFDGDEMNVHFPQDEISRAEA NIVNAN+QYIVPT GD +
Sbjct: 585  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTV 644

Query: 753  RGLIQDHIVSAVLLTMKDRFLTCEEYHQLLHASCVPAAATS-SLGNFGQKVSVLRASDDI 577
            RGLIQDHIV AV+LTMK+ FLT  E++QLL+ S V AA  + + GN   KVSV+     +
Sbjct: 645  RGLIQDHIVGAVILTMKNTFLTLHEFNQLLYGSGVFAAGPAPTSGNHSNKVSVVDFEGVV 704

Query: 576  QSSPPAIWKPKRLWTGKQVLSAILCHITKGRKPFTMVKDGRIPKEYF------------- 436
            Q+  PA+WKPK LWTGKQV++A+L H+TKG  P T+   G+IP  YF             
Sbjct: 705  QTVLPAVWKPKPLWTGKQVITALLNHLTKGCAPCTVKNKGKIPYPYFLSESRLVEYQSRE 764

Query: 435  -GKDYT-ERSLSIYNNEFIHGMIDKAQFGKYGLVHIVHELYGADTAGTLLSVFSRLFTLF 262
              +D T E    I+ NE + G+IDKAQFGK+GLVH + ELYG++ AG LLS  SRLFT+F
Sbjct: 765  EQEDRTAENEFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLSALSRLFTIF 824

Query: 261  LQMHGFSCGVDDLLIVQDSDLERKRILEKSEVQSEEVHVRFIANASGDIDQMNLQKEIER 82
            LQ+HGF+CGVDDL+I+   D+ RK  LE  +V  EE H  F+    G+I  + LQ EIE+
Sbjct: 825  LQLHGFTCGVDDLVILPHYDIRRKEELEGDDV-GEEAHCDFVKFKRGEIGPLELQLEIEK 883

Query: 81   TIRSNGESATARLDRMMSSAL 19
             + SN E+ATA LD  M + L
Sbjct: 884  AMSSNKEAATAALDMKMKNKL 904


>gb|EOY09357.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma cacao]
          Length = 1400

 Score =  582 bits (1500), Expect = e-163
 Identities = 307/518 (59%), Positives = 376/518 (72%), Gaps = 39/518 (7%)
 Frame = -1

Query: 1452 QKTVNVLYDSSKGFGKSDKETSGIRQYLEKKDGILRQKIMGKRVNHACRSVISPDPYLAV 1273
            Q++VN+L+DS     +    +SGI Q LEKK+G+ RQK+MGKRVN ACRSVISPDPYLAV
Sbjct: 114  QQSVNLLFDSKTAMSQGRDVSSGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAV 173

Query: 1272 NEIGIPPYFAERLTYPERVTPWNVCKLRDAVINGT-----ATHYKDKDRIYKLQ-SRNMR 1111
            NEIGIPPYFA RLTYPERVTPWNV KLR+A+ING+     ATHY DK    +L  S+  R
Sbjct: 174  NEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLPPSQKAR 233

Query: 1110 LAVARKLPTSQGVLTQTCKGPESEFEGKIVYRHLQDGDIVLVNRQPTLHKPSMMAHLVRV 931
            ++++RKLP+S+G + Q  K  + EFEGKIV RHLQDGD+VLVNRQPTLHKPS+MAH+VRV
Sbjct: 234  ISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRV 293

Query: 930  LKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANKQYIVPTSGDPIR 751
            LKGEKTIRMHYANCSTYNADFDGDE+NVHFPQDEISRAEA NIVNAN QY+ P++G+PIR
Sbjct: 294  LKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIR 353

Query: 750  GLIQDHIVSAVLLTMKDRFLTCEEYHQLLHASCVPAAATSSL-GNFGQKVSVLRASDDIQ 574
             LIQDHIVSAVLLT +D FL+ +E++QLL++S V + A +S  G  GQKV V  + + + 
Sbjct: 354  ALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGML 413

Query: 573  SSPPAIWKPKRLWTGKQVLSAILCHITKGRKPFTMVKDGRIPKEYF-------------- 436
               PAI KPK LWTGKQV+S++L HIT+GR PFT+ K  +IP+++F              
Sbjct: 414  PIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREE 473

Query: 435  -----------------GKDYTERSLSIYNNEFIHGMIDKAQFGKYGLVHIVHELYGADT 307
                              K+  E  + IY N+ + G+IDKAQF  YGLVH V ELYG++T
Sbjct: 474  NQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNT 533

Query: 306  AGTLLSVFSRLFTLFLQMHGFSCGVDDLLIVQDSDLERKRILEKSEVQSEEVHVR-FIAN 130
            AG LLSVFSRLFT+FLQMHGF+CGVDDLLI++D D+ERK+ LE  E +  E H   F   
Sbjct: 534  AGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGVK 593

Query: 129  ASGDIDQMNLQKEIERTIRSNGESATARLDRMMSSALN 16
             + +     LQ EIERTIR +GE+A   LDR M S LN
Sbjct: 594  VNSETAPTELQLEIERTIRRDGETALTALDRKMISVLN 631


>gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score =  582 bits (1500), Expect = e-163
 Identities = 307/518 (59%), Positives = 376/518 (72%), Gaps = 39/518 (7%)
 Frame = -1

Query: 1452 QKTVNVLYDSSKGFGKSDKETSGIRQYLEKKDGILRQKIMGKRVNHACRSVISPDPYLAV 1273
            Q++VN+L+DS     +    +SGI Q LEKK+G+ RQK+MGKRVN ACRSVISPDPYLAV
Sbjct: 406  QQSVNLLFDSKTAMSQGRDVSSGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAV 465

Query: 1272 NEIGIPPYFAERLTYPERVTPWNVCKLRDAVINGT-----ATHYKDKDRIYKLQ-SRNMR 1111
            NEIGIPPYFA RLTYPERVTPWNV KLR+A+ING+     ATHY DK    +L  S+  R
Sbjct: 466  NEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLPPSQKAR 525

Query: 1110 LAVARKLPTSQGVLTQTCKGPESEFEGKIVYRHLQDGDIVLVNRQPTLHKPSMMAHLVRV 931
            ++++RKLP+S+G + Q  K  + EFEGKIV RHLQDGD+VLVNRQPTLHKPS+MAH+VRV
Sbjct: 526  ISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRV 585

Query: 930  LKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANKQYIVPTSGDPIR 751
            LKGEKTIRMHYANCSTYNADFDGDE+NVHFPQDEISRAEA NIVNAN QY+ P++G+PIR
Sbjct: 586  LKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIR 645

Query: 750  GLIQDHIVSAVLLTMKDRFLTCEEYHQLLHASCVPAAATSSL-GNFGQKVSVLRASDDIQ 574
             LIQDHIVSAVLLT +D FL+ +E++QLL++S V + A +S  G  GQKV V  + + + 
Sbjct: 646  ALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGML 705

Query: 573  SSPPAIWKPKRLWTGKQVLSAILCHITKGRKPFTMVKDGRIPKEYF-------------- 436
               PAI KPK LWTGKQV+S++L HIT+GR PFT+ K  +IP+++F              
Sbjct: 706  PIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREE 765

Query: 435  -----------------GKDYTERSLSIYNNEFIHGMIDKAQFGKYGLVHIVHELYGADT 307
                              K+  E  + IY N+ + G+IDKAQF  YGLVH V ELYG++T
Sbjct: 766  NQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNT 825

Query: 306  AGTLLSVFSRLFTLFLQMHGFSCGVDDLLIVQDSDLERKRILEKSEVQSEEVHVR-FIAN 130
            AG LLSVFSRLFT+FLQMHGF+CGVDDLLI++D D+ERK+ LE  E +  E H   F   
Sbjct: 826  AGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGVK 885

Query: 129  ASGDIDQMNLQKEIERTIRSNGESATARLDRMMSSALN 16
             + +     LQ EIERTIR +GE+A   LDR M S LN
Sbjct: 886  VNSETAPTELQLEIERTIRRDGETALTALDRKMISVLN 923


>gb|EMS52925.1| DNA-directed RNA polymerase I subunit rpa1 [Triticum urartu]
          Length = 1915

 Score =  580 bits (1496), Expect = e-163
 Identities = 301/502 (59%), Positives = 367/502 (73%), Gaps = 18/502 (3%)
 Frame = -1

Query: 1452 QKTVNVLYDSSKGFGKSDKETSGIRQYLEKKDGILRQKIMGKRVNHACRSVISPDPYLAV 1273
            Q +VN+ YDSSKG  KSDK+  G+RQ ++KK GI+RQKIMGKRVNH+CR+VISPDP+LAV
Sbjct: 616  QTSVNLFYDSSKGLVKSDKDGHGVRQLVDKKTGIVRQKIMGKRVNHSCRTVISPDPFLAV 675

Query: 1272 NEIGIPPYFAERLTYPERVTPWNVCKLRDAVINGT-----ATHYKDKDRIYKLQS-RNMR 1111
            NEIGIPP  A +LTYPE+VTPWN   LR A+ NG      ATHYK  + +YKLQ+  + R
Sbjct: 676  NEIGIPPAAASKLTYPEKVTPWNAKNLRGAIRNGAEIHPGATHYKVNNNLYKLQADHSKR 735

Query: 1110 LAVARKLPTSQGVLTQTCKGPESEFEGKIVYRHLQDGDIVLVNRQPTLHKPSMMAHLVRV 931
               A+ L  S+G ++Q  K P  EFE K+VYRH+QDGDIVLVNRQPTLHKPSMMAH+VRV
Sbjct: 736  HPTAKTLLASRGSISQPGKDPRCEFESKVVYRHIQDGDIVLVNRQPTLHKPSMMAHVVRV 795

Query: 930  LKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANKQYIVPTSGDPIR 751
            L GEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEA+NIV+ANKQYI P SG+ +R
Sbjct: 796  LPGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAINIVDANKQYIGPRSGEAVR 855

Query: 750  GLIQDHIVSAVLLTMKDRFLTCEEYHQLLHASCVPAAATSSLGNFGQKVSVLRASDDIQS 571
            GLIQDHIV AVLLT  D FL+ EEY QL++ SCV  ++T      G++VS++   D ++ 
Sbjct: 856  GLIQDHIVGAVLLTKVDTFLSREEYSQLVYGSCV--SSTRGPCQSGKRVSIVNDDDTLEL 913

Query: 570  SPPAIWKPKRLWTGKQVLSAILCHITKGRKPFTMVKDGRIPKEYFG------------KD 427
             PPA  KP+R WTGKQV++ IL H+TKG  PFT+   G+I  +Y              +D
Sbjct: 914  LPPAFVKPER-WTGKQVITTILNHLTKGHPPFTVEMKGKISVQYLTAKVRHVAEGEKLRD 972

Query: 426  YTERSLSIYNNEFIHGMIDKAQFGKYGLVHIVHELYGADTAGTLLSVFSRLFTLFLQMHG 247
              E  L I +NE + GMIDK QFG +G+VH VHELYGADTAG LLS+FSRLFTLFLQ HG
Sbjct: 973  PEELVLYIRHNELLKGMIDKNQFGNHGIVHTVHELYGADTAGRLLSIFSRLFTLFLQFHG 1032

Query: 246  FSCGVDDLLIVQDSDLERKRILEKSEVQSEEVHVRFIANASGDIDQMNLQKEIERTIRSN 67
            F+CG+DDLL+ Q+S+ ER   L KSE  SEE H +F+     D D + LQ  IE+ +R  
Sbjct: 1033 FTCGIDDLLLSQESNNERTDFLSKSEEHSEEAHKKFLCKKDVDTDLVELQMNIEKVVRRI 1092

Query: 66   GESATARLDRMMSSALNLITSE 1
            GESA   LD+ M S LN +T++
Sbjct: 1093 GESANVALDKAMLSELNGLTTK 1114


>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            lycopersicum]
          Length = 1677

 Score =  580 bits (1495), Expect = e-163
 Identities = 302/501 (60%), Positives = 369/501 (73%), Gaps = 23/501 (4%)
 Frame = -1

Query: 1452 QKTVNVLYDSSKGFGKSDKET-SGIRQYLEKKDGILRQKIMGKRVNHACRSVISPDPYLA 1276
            Q++VNVL+DS    G   K+  SGI Q LEKK+GI RQK+MGKRVN ACRSVISPDPYL+
Sbjct: 405  QQSVNVLFDSKTASGPGQKDVGSGICQMLEKKEGIFRQKMMGKRVNFACRSVISPDPYLS 464

Query: 1275 VNEIGIPPYFAERLTYPERVTPWNVCKLRDAVINGTATH-----YKDKDRIYKLQS-RNM 1114
            VNEIGIPPYFA RLTYPER+TPWN  K+RDAVING   H     + D+    KL S + M
Sbjct: 465  VNEIGIPPYFASRLTYPERLTPWNAVKMRDAVINGPENHPGAISFADRIATVKLPSNKKM 524

Query: 1113 RLAVARKLPTSQGVLTQTCKGPESEFEGKIVYRHLQDGDIVLVNRQPTLHKPSMMAHLVR 934
            R+A++RKLP+S+G +TQ+ +  E EFEGK+VYRHLQDGD+VLVNRQPTLHKPS+MAH+VR
Sbjct: 525  RVAISRKLPSSRGAVTQSGRNNEYEFEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 584

Query: 933  VLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANKQYIVPTSGDPI 754
            VLKGEKT+RMHYANCSTYNADFDGDEMNVHFPQDEISRAEA NIVNAN+QYIVPT GD +
Sbjct: 585  VLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTV 644

Query: 753  RGLIQDHIVSAVLLTMKDRFLTCEEYHQLLHASCVPAAATS-SLGNFGQKVSVLRASDDI 577
            RGLIQDHIV AV+LTMK+ FL+  E++QLL+ S V AA  + + GN   KVS++     +
Sbjct: 645  RGLIQDHIVGAVILTMKNTFLSLHEFNQLLYGSGVFAAGPAPTSGNHSNKVSIVDFEGVV 704

Query: 576  QSSPPAIWKPKRLWTGKQVLSAILCHITKGRKPFTMVKDGRIPKEYF------------- 436
            Q+  PA+WKPK LWTGKQV++A+L H+T G  P T+   G+IP  YF             
Sbjct: 705  QTVLPAVWKPKPLWTGKQVITALLNHLTNGCPPCTVKNKGKIPYAYFLSESRLVEYQSRE 764

Query: 435  -GKDYT-ERSLSIYNNEFIHGMIDKAQFGKYGLVHIVHELYGADTAGTLLSVFSRLFTLF 262
              +D T E    I+ NE + G+IDKAQFGK+GLVH + ELYG++ AG LLS  SRLFT+F
Sbjct: 765  EQEDRTAENEFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLSALSRLFTIF 824

Query: 261  LQMHGFSCGVDDLLIVQDSDLERKRILEKSEVQSEEVHVRFIANASGDIDQMNLQKEIER 82
            LQ+HGF+CG+DDL+I+   D+ RK  LE  +V  EE H  F+    G+I  + LQ EIE+
Sbjct: 825  LQLHGFTCGIDDLVILPHYDIRRKEELEGDDV-GEEAHCDFVKFKRGEIGPLELQLEIEK 883

Query: 81   TIRSNGESATARLDRMMSSAL 19
             I SN E ATA LD  M + L
Sbjct: 884  AISSNKEVATAALDMKMKNKL 904


>gb|EOY09358.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma cacao]
          Length = 1397

 Score =  580 bits (1494), Expect = e-163
 Identities = 306/517 (59%), Positives = 374/517 (72%), Gaps = 38/517 (7%)
 Frame = -1

Query: 1452 QKTVNVLYDSSKGFGKSDKETSGIRQYLEKKDGILRQKIMGKRVNHACRSVISPDPYLAV 1273
            Q++VN+L+DS     +    +SGI Q LEKK+G+ RQK+MGKRVN ACRSVISPDPYLAV
Sbjct: 114  QQSVNLLFDSKTAMSQGRDVSSGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAV 173

Query: 1272 NEIGIPPYFAERLTYPERVTPWNVCKLRDAVINGT-----ATHYKDKDRIYKLQ-SRNMR 1111
            NEIGIPPYFA RLTYPERVTPWNV KLR+A+ING+     ATHY DK    +L  S+  R
Sbjct: 174  NEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLPPSQKAR 233

Query: 1110 LAVARKLPTSQGVLTQTCKGPESEFEGKIVYRHLQDGDIVLVNRQPTLHKPSMMAHLVRV 931
            ++++RKLP+S+G + Q  K  + EFEGKIV RHLQDGD+VLVNRQPTLHKPS+MAH+VRV
Sbjct: 234  ISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRV 293

Query: 930  LKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANKQYIVPTSGDPIR 751
            LKGEKTIRMHYANCSTYNADFDGDE+NVHFPQDEISRAEA NIVNAN QY+ P++G+PIR
Sbjct: 294  LKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIR 353

Query: 750  GLIQDHIVSAVLLTMKDRFLTCEEYHQLLHASCVPAAATSSL-GNFGQKVSVLRASDDIQ 574
             LIQDHIVSAVLLT +D FL+ +E++QLL++S V + A +S  G  GQKV V  + + + 
Sbjct: 354  ALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGML 413

Query: 573  SSPPAIWKPKRLWTGKQVLSAILCHITKGRKPFTMVKDGRIPKEYF-------------- 436
               PAI KPK LWTGKQV+S++L HIT+GR PFT+ K  +IP+++F              
Sbjct: 414  PIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREE 473

Query: 435  -----------------GKDYTERSLSIYNNEFIHGMIDKAQFGKYGLVHIVHELYGADT 307
                              K+  E  + IY N+ + G+IDKAQF  YGLVH V ELYG++T
Sbjct: 474  NQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNT 533

Query: 306  AGTLLSVFSRLFTLFLQMHGFSCGVDDLLIVQDSDLERKRILEKSEVQSEEVHVRFIANA 127
            AG LLSVFSRLFT+FLQMHGF+CGVDDLLI++D D+ERK+ LE  E +  E H       
Sbjct: 534  AGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGVK 593

Query: 126  SGDIDQMNLQKEIERTIRSNGESATARLDRMMSSALN 16
                 +  LQ EIERTIR +GE+A   LDR M S LN
Sbjct: 594  VN--SETELQLEIERTIRRDGETALTALDRKMISVLN 628


>gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score =  580 bits (1494), Expect = e-163
 Identities = 306/517 (59%), Positives = 374/517 (72%), Gaps = 38/517 (7%)
 Frame = -1

Query: 1452 QKTVNVLYDSSKGFGKSDKETSGIRQYLEKKDGILRQKIMGKRVNHACRSVISPDPYLAV 1273
            Q++VN+L+DS     +    +SGI Q LEKK+G+ RQK+MGKRVN ACRSVISPDPYLAV
Sbjct: 406  QQSVNLLFDSKTAMSQGRDVSSGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAV 465

Query: 1272 NEIGIPPYFAERLTYPERVTPWNVCKLRDAVINGT-----ATHYKDKDRIYKLQ-SRNMR 1111
            NEIGIPPYFA RLTYPERVTPWNV KLR+A+ING+     ATHY DK    +L  S+  R
Sbjct: 466  NEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLPPSQKAR 525

Query: 1110 LAVARKLPTSQGVLTQTCKGPESEFEGKIVYRHLQDGDIVLVNRQPTLHKPSMMAHLVRV 931
            ++++RKLP+S+G + Q  K  + EFEGKIV RHLQDGD+VLVNRQPTLHKPS+MAH+VRV
Sbjct: 526  ISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRV 585

Query: 930  LKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANKQYIVPTSGDPIR 751
            LKGEKTIRMHYANCSTYNADFDGDE+NVHFPQDEISRAEA NIVNAN QY+ P++G+PIR
Sbjct: 586  LKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIR 645

Query: 750  GLIQDHIVSAVLLTMKDRFLTCEEYHQLLHASCVPAAATSSL-GNFGQKVSVLRASDDIQ 574
             LIQDHIVSAVLLT +D FL+ +E++QLL++S V + A +S  G  GQKV V  + + + 
Sbjct: 646  ALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGML 705

Query: 573  SSPPAIWKPKRLWTGKQVLSAILCHITKGRKPFTMVKDGRIPKEYF-------------- 436
               PAI KPK LWTGKQV+S++L HIT+GR PFT+ K  +IP+++F              
Sbjct: 706  PIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREE 765

Query: 435  -----------------GKDYTERSLSIYNNEFIHGMIDKAQFGKYGLVHIVHELYGADT 307
                              K+  E  + IY N+ + G+IDKAQF  YGLVH V ELYG++T
Sbjct: 766  NQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNT 825

Query: 306  AGTLLSVFSRLFTLFLQMHGFSCGVDDLLIVQDSDLERKRILEKSEVQSEEVHVRFIANA 127
            AG LLSVFSRLFT+FLQMHGF+CGVDDLLI++D D+ERK+ LE  E +  E H       
Sbjct: 826  AGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGVK 885

Query: 126  SGDIDQMNLQKEIERTIRSNGESATARLDRMMSSALN 16
                 +  LQ EIERTIR +GE+A   LDR M S LN
Sbjct: 886  VN--SETELQLEIERTIRRDGETALTALDRKMISVLN 920


>ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355509045|gb|AES90187.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1628

 Score =  579 bits (1493), Expect = e-163
 Identities = 305/510 (59%), Positives = 373/510 (73%), Gaps = 27/510 (5%)
 Frame = -1

Query: 1452 QKTVNVLYDSSKGFGKSDKETSGIRQYLEKKDGILRQKIMGKRVNHACRSVISPDPYLAV 1273
            Q +VN+L+D+     +S K+ SGI Q L+KK+GI RQK+MGKRVN+ACRSVISPDPYLAV
Sbjct: 372  QGSVNLLFDNKTSL-RSQKDASGICQLLDKKEGIFRQKMMGKRVNYACRSVISPDPYLAV 430

Query: 1272 NEIGIPPYFAERLTYPERVTPWNVCKLRDAVINGTATH-----YKDKDRIYKLQS-RNMR 1111
            NEIGIPPYFA RLTYPERVTPWN  KL DA++NG  TH     Y DK    +LQ  +++R
Sbjct: 431  NEIGIPPYFALRLTYPERVTPWNSAKLMDAILNGPDTHPGAILYTDKTSTLRLQKDKSLR 490

Query: 1110 LAVARKLPTSQGVLTQTCKGPESEFEGKIVYRHLQDGDIVLVNRQPTLHKPSMMAHLVRV 931
             + +R+L +S+GV+    K  E EFEGK+VYRHL+DGD+VLVNRQPTLHKPS+MAH+VRV
Sbjct: 491  SSTSRRLQSSRGVIMHHGKIHEHEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRV 550

Query: 930  LKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANKQYIVPTSGDPIR 751
            LKGEKT+RMHYANCSTYNADFDGDE+NVHFPQDEISRAEA NIVNAN QY+ PTSGDPIR
Sbjct: 551  LKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIR 610

Query: 750  GLIQDHIVSAVLLTMKDRFLTCEEYHQLLHASCVPAAATSSLGNF----GQKVSVLRASD 583
             LIQDHIVSA LLT KD FL+C+E++QLL++S V   + + +G+F    GQKV +  +  
Sbjct: 611  ALIQDHIVSAALLTKKDTFLSCQEFNQLLYSSGV---SMTGMGSFSCKPGQKVLMSNSES 667

Query: 582  DIQSSPPAIWKPKRLWTGKQVLSAILCHITKGRKPFTMVKDGRIPKEYF----------- 436
            ++   PPAI+KP+ LWTGKQV+SA+LC+ITKGR PFT+ K+ +IP  +F           
Sbjct: 668  EMFLFPPAIFKPEPLWTGKQVISALLCYITKGRPPFTVEKNAKIPSSFFKTQTGEIKKHT 727

Query: 435  -----GKDYTERSLSIYNNEFIHGMIDKAQFGKYGLVHIVHELYGADTAGTLLSVFSRLF 271
                  KD  E  L IY N+ + G++DKAQFG YG+VH V E YG++TAG LLS  SRLF
Sbjct: 728  KDTSRKKDELEDKLLIYRNDLVRGVVDKAQFGDYGMVHTVQEFYGSNTAGILLSALSRLF 787

Query: 270  TLFLQMHGFSCGVDDLLIVQDSDLERKRILEKSEVQSEEVHVRFI-ANASGDIDQMNLQK 94
            T FLQMHGF+CGVDDLLI    D ER   LE  E   + VH  FI    S +ID + +Q 
Sbjct: 788  TNFLQMHGFTCGVDDLLIKVGKDSERLNQLESCEEIGDIVHREFIGVMESENIDPITMQL 847

Query: 93   EIERTIRSNGESATARLDRMMSSALNLITS 4
             +E+ IRSNGE+A   LDR M S LN  TS
Sbjct: 848  NVEKKIRSNGEAAITYLDRKMISNLNSRTS 877


>ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1660

 Score =  578 bits (1489), Expect = e-162
 Identities = 304/509 (59%), Positives = 369/509 (72%), Gaps = 26/509 (5%)
 Frame = -1

Query: 1452 QKTVNVLYDSSKGFGKSDKE-TSGIRQYLEKKDGILRQKIMGKRVNHACRSVISPDPYLA 1276
            Q++VN+L+D+    G+S K+  +GI Q LEKK+GI RQK+MGKRVN+ACRSVISPDPYLA
Sbjct: 382  QRSVNLLFDNKTASGESQKDLVTGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLA 441

Query: 1275 VNEIGIPPYFAERLTYPERVTPWNVCKLRDAVINGTATH-----YKDKDRIYKLQ-SRNM 1114
            VNEIGIPPYFA RLTYPERVTPWNV +LR+A++NG  TH     Y DK    KL   R  
Sbjct: 442  VNEIGIPPYFALRLTYPERVTPWNVVELRNAILNGPETHPGATLYADKTSTLKLPLDRRS 501

Query: 1113 RLAVARKLPTSQGVLTQTCKGPESEFEGKIVYRHLQDGDIVLVNRQPTLHKPSMMAHLVR 934
            R   +R+L +S+GV+    K  ++EFEGK+VYRHL+DGD+VLVNRQPTLHKPS+MAH+VR
Sbjct: 502  RSLTSRRLQSSRGVIMHNGKIHDNEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVR 561

Query: 933  VLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANKQYIVPTSGDPI 754
            VLKGEKT+RMHYANCSTYNADFDGDE+NVHFPQDEISRAEA NIVNAN QY+ PTSGDPI
Sbjct: 562  VLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPI 621

Query: 753  RGLIQDHIVSAVLLTMKDRFLTCEEYHQLLHASCVPAAATSSL-GNFGQKVSVLRASDDI 577
            R LIQDHIVSA LLT KD FL+CEE++QLL++S V         G  GQK+ +  +  ++
Sbjct: 622  RALIQDHIVSAALLTKKDTFLSCEEFNQLLYSSGVSMTGMGPFPGKPGQKIFMSNSDSEM 681

Query: 576  QSSPPAIWKPKRLWTGKQVLSAILCHITKGRKPFTMVKDGRIPKEYF------GKDYT-- 421
               PPAI+KP+ LWTGKQV+SA+L +ITKG  PFT+ K+ +IP  +F      GK  T  
Sbjct: 682  FLFPPAIFKPEPLWTGKQVISALLYYITKGSPPFTVEKNAKIPSSFFKTRMREGKKRTKD 741

Query: 420  ---------ERSLSIYNNEFIHGMIDKAQFGKYGLVHIVHELYGADTAGTLLSVFSRLFT 268
                     E  L IY N+ + G++DKAQFG YG+VH V E YG++TAG LLS  SRLFT
Sbjct: 742  TSIKKDEPDEDKLLIYKNDLVRGVVDKAQFGDYGIVHTVQEFYGSNTAGFLLSALSRLFT 801

Query: 267  LFLQMHGFSCGVDDLLIVQDSDLERKRILEKSEVQSEEVHVRFIANASGD-IDQMNLQKE 91
             FLQMHGF+CGVDDLL+ +  D ER   LE  E   + VH  FI    GD ID + +Q  
Sbjct: 802  NFLQMHGFTCGVDDLLLTEGKDSERTNQLESCEEIGDIVHREFIGVMEGDNIDPITMQLN 861

Query: 90   IERTIRSNGESATARLDRMMSSALNLITS 4
            +E+ IRSNGE+A   LDR M S LN  TS
Sbjct: 862  VEKKIRSNGEAAITYLDRKMISNLNSRTS 890