BLASTX nr result
ID: Stemona21_contig00010644
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Stemona21_contig00010644
(4236 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g... 2064 0.0
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s... 2034 0.0
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S... 2025 0.0
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s... 1998 0.0
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s... 1957 0.0
ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III s... 1842 0.0
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s... 1835 0.0
ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [A... 1763 0.0
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s... 1751 0.0
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s... 1750 0.0
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s... 1745 0.0
gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao] 1735 0.0
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s... 1731 0.0
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [... 1704 0.0
ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Sela... 1702 0.0
ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi... 1689 0.0
ref|XP_002531828.1| DNA-directed RNA polymerase III largest subu... 1683 0.0
gb|ESW04135.1| hypothetical protein PHAVU_011G070100g [Phaseolus... 1677 0.0
ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citr... 1675 0.0
ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III s... 1673 0.0
>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
Japonica Group] gi|38347455|emb|CAD41360.2|
OSJNBa0076N16.24 [Oryza sativa Japonica Group]
gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
Japonica Group] gi|116310339|emb|CAH67354.1|
OSIGBa0130B08.14 [Oryza sativa Indica Group]
gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|218195112|gb|EEC77539.1| hypothetical protein
OsI_16437 [Oryza sativa Indica Group]
Length = 1383
Score = 2064 bits (5348), Expect = 0.0
Identities = 1010/1384 (72%), Positives = 1179/1384 (85%), Gaps = 7/1384 (0%)
Frame = -2
Query: 4148 MSRREEKLRCTKEPYIEDVGPRRIKSIRFGMLSGDEIRKLAEVQVWTNRFYDASVKPVPH 3969
M+R EEKLRCTKEP+IEDVG RRIKSIRF M SG+E+R+ AEVQVW +R Y+ +KPVP+
Sbjct: 1 MARPEEKLRCTKEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVPN 60
Query: 3968 GLLDPRMGAPNKSSSCSTCHGSHQDCPGHFGYLKLTLPVFNVGYFNSILNILKCICKSCA 3789
GLLD RMGA NK CSTCHGS +CPGHFGYLKL LPVFNVG+FN IL++LKCICKSC+
Sbjct: 61 GLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCS 120
Query: 3788 RILIADKDRIDYLKKMRNPKIDIAQKNAFVKKIRDRCKAGRCPRCGSINGTMKKAKASLA 3609
R+L+ +KDR+++LKKMRNPK D QK+A +KK+RD+CK RCP CG ING KK +A L
Sbjct: 121 RVLLMEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGVAKKGRAGLI 180
Query: 3608 VVEDFSKFAGARSEDYHRGAAATKDKAPAPVQTLNMLNAVSVLALFKRMPDEDCELLNLH 3429
++ D SK +E+ + K+K + + ML+ VL+LFKRM DEDCELLNL
Sbjct: 181 ILHDCSKTLDGSTEELRDALSHKKEKLS--ISAVRMLDPAIVLSLFKRMTDEDCELLNLG 238
Query: 3428 DRPEKMIVTNIPVPPLAIRPSVFVDYGKSTNEDSLTSILRNVINTNSLLREDIEGGAPAF 3249
DRPEK+IVT I VPP+ IRPSVFV G+ +NEDS+T IL+++ NTNS+L+E+++ G
Sbjct: 239 DRPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFM 298
Query: 3248 KCLECWLHLQTQVVEYVNSDAPGLQDSKHRGIIQRLKGKQGRFRCNLSGKRAEFTGRTVI 3069
KC +CW HLQ QVVEY+NSDAP L +S+HRG++QRLKGK GRFR NLSGKR E+TGRTVI
Sbjct: 299 KCFDCWQHLQLQVVEYINSDAPSLPESQHRGLVQRLKGKTGRFRGNLSGKRTEYTGRTVI 358
Query: 3068 SPDPNLKITEVGIPILMARVLTYPERVSHHNIEKLRQCVRNGPFKYPGANYVELPDGTRI 2889
SPDPNL+ITEV IPILMARVLTYPERVS++NIEKLRQC+RNGP K+PGAN++ PDGT++
Sbjct: 359 SPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFIIQPDGTKL 418
Query: 2888 FLKFAEKKNVASDLKYGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNE 2709
LK+ +++ A DLKYG +VERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNE
Sbjct: 419 HLKYCDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNE 478
Query: 2708 SVCNPYNADFDGDEMNLHVPQTEEARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSY 2529
SVCNPYNADFDGDEMNLHVPQTEEARTEAL LMGVQNNLCTPKNGEILVASTQDFLTSS+
Sbjct: 479 SVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 538
Query: 2528 LITRRDTFYDRATFSLICSYMGDGMDAIDLPTPSIIKPVELWTGKQVFSVLIRPNAGTRV 2349
L+TR+D FYDR++FSL+CSY+GD M+ IDLPTP++IKP+ELWTGKQ+FSVL+RPNA T+V
Sbjct: 539 LVTRKDNFYDRSSFSLLCSYLGDAMENIDLPTPALIKPIELWTGKQLFSVLVRPNACTKV 598
Query: 2348 YLNLTVKEKIFSKPVGVC---PTMCPKDGFVYFRNSELISGQLGKTTLGNGNKDGLFSVL 2178
+LNLTVKEKI+ P G MCP DGFVYFRNSEL+SGQ+GK TLGNGNKDG+FS L
Sbjct: 599 FLNLTVKEKIYKTPKGSTLEPEAMCPNDGFVYFRNSELLSGQVGKATLGNGNKDGMFSTL 658
Query: 2177 LRDYNSHAAACCMNRLAKLSARWIGNHGFSIGIDDVQPGEHLTQQKKQKIDDGYRECHKF 1998
+RDYNSHAAA CMNRLAK SAR+IGNHGFSIG+DDVQPGEHL Q+KK KID GY++CH
Sbjct: 659 VRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNQEKKMKIDGGYKDCHDL 718
Query: 1997 ISLYNEGKLNLQPGCDSAQTLELNITSVLNQIRGQAGDVCMNTLHWRNSPLIMSQCGSKG 1818
I+ Y++G L LQPGC++AQTLE +IT VLN+IR +AG VCMNTLHWRNSPLIMSQCGSKG
Sbjct: 719 IASYSKGALRLQPGCNAAQTLEQSITRVLNEIREEAGKVCMNTLHWRNSPLIMSQCGSKG 778
Query: 1817 SPINISQMIACVGQQSVGGRRAPNGFINRTLPHFPINSKTPAAKGFVANSFYTGLTATEF 1638
SPINISQM+ACVGQQSVGGRRAPNGFI+RTLPHFPINSKTPAAKGFVANSFYTGLTATEF
Sbjct: 779 SPINISQMVACVGQQSVGGRRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYTGLTATEF 838
Query: 1637 FFHTMGGREGLVDTAVKTAETGYMSRRLIKGLEDLSLYYDLTVRNASGGVVQFLYGDDGM 1458
FFHTMGGREGLVDTAVKTAETGYMSRRL+KGLEDLS++YD TVRNASGG+VQFLYGDDGM
Sbjct: 839 FFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDGM 898
Query: 1457 DPAKMEGKDGLPLNLDQLFSKVMATCPSRGDEALSPSEILQIMDERFSKYDASSEGHSSA 1278
DPAKMEGKDG PLNLDQLF KVMATCP RG LSP EILQI++++ S++DASS+ S
Sbjct: 899 DPAKMEGKDGKPLNLDQLFMKVMATCPQRGQNTLSPGEILQILNDKLSEHDASSDDGCSE 958
Query: 1277 AFEKLISGFLQERVAALKKTRSTLKLDEDNVGKRDTSIMENVAAKVSGVSLKQLQVFLDI 1098
F++L++ FL++R+ LK TR L LDED+VG+R +S E++AA +SG+S+KQLQVFLD
Sbjct: 959 KFKQLLTYFLEDRIKLLKSTRRALLLDEDHVGERHSSFEESIAANISGISVKQLQVFLDT 1018
Query: 1097 CFSRYQLKKLEPXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGA 918
C SRY LKK+E GEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN A
Sbjct: 1019 CLSRYHLKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAA 1078
Query: 917 KKISTPIITATLLSDHDDTVARIVKGSIEKTVLGEVAKAIKIVLKSSQPYIAVTLDTDRI 738
KKISTPIITA LLS+ D ARIVKGS+EK VLGEVA+AIKIVLKSSQP + V LD RI
Sbjct: 1079 KKISTPIITAELLSEKDVLSARIVKGSMEKAVLGEVAEAIKIVLKSSQPNLVVKLDMQRI 1138
Query: 737 VSLQMRISSDSVKHSILNHPKIKLKPDRVHIMSASKLRIFSSEADRSKLQYELHTLKAML 558
+L M IS+DSV+ SILNHPKIKLK + V ++ SKLRI+ + D+SKL YELH LK+ML
Sbjct: 1139 EALHMGISADSVQLSILNHPKIKLKSEHVRVIDKSKLRIYPAGIDKSKLLYELHHLKSML 1198
Query: 557 PKVIVKGIPTVERAVINKQG----GKYNLLVEGTNLLAVMGSPGIDPCKTRSNHVIEVQE 390
PKVIVKGIPTVERAVI++ G +Y LLVEGTNLLAVMG+PG+D KT+SNH++EV
Sbjct: 1199 PKVIVKGIPTVERAVISETGEENDKRYKLLVEGTNLLAVMGTPGVDAMKTKSNHIMEVNR 1258
Query: 389 TLGIEAARKCIINEIQYTMSSHGMSIDTRHMMLLADLMTYKGEVLGITRFGISKMKESVL 210
TLGIEAAR+ II+EIQYTM SHGM+ID+RHMMLLADLMTYKGE+LGITR+GI+KMK SVL
Sbjct: 1259 TLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTYKGEILGITRYGIAKMKSSVL 1318
Query: 209 MLASFEKTSEHLFNASFNGRDDEIEGVSECIIMGIPMKLGTGILKVQQRVEQLPELKYAP 30
MLASFEKT+EHLFNAS++GR+D+IEGVSECIIMGIPM+LGTGILKV+QR++ LPE KY P
Sbjct: 1319 MLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRLDHLPEFKYQP 1378
Query: 29 DPIL 18
DPIL
Sbjct: 1379 DPIL 1382
>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
brachyantha]
Length = 1389
Score = 2034 bits (5269), Expect = 0.0
Identities = 995/1394 (71%), Positives = 1174/1394 (84%), Gaps = 17/1394 (1%)
Frame = -2
Query: 4148 MSRREEKLRCTKEPYIEDVGPRRIKSIRFGMLSGDEIRKLAEVQVWTNRFYDASVKPVPH 3969
M+R EEKLRCTKEP+IED G RRIKSIRF M SG+E+R+ AEVQVW +R Y+ ++PVP+
Sbjct: 1 MARPEEKLRCTKEPFIEDAGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNQEMRPVPN 60
Query: 3968 GLLDPRMGAPNKSSSCSTCHGSHQDCPGHFGYLKLTLPVFNVGYFNSILNILKCICKSCA 3789
GLLD RMGA NK CSTCHGS +CPGHFGYLKL LPVFNVG+FN IL++LKCICK C+
Sbjct: 61 GLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKGCS 120
Query: 3788 RILIADKDRIDYLKKMRNPKIDIAQKNAFVKKIRDRCKAGRCPRCGSINGTMKKAKASLA 3609
R+L+ +KDR+++LKKMRNPK D QK+A +KK+RD+CK RCP CG ING KK +A L
Sbjct: 121 RVLLVEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGVAKKGRAGLI 180
Query: 3608 VVEDFSKFAGARSEDYHRGAAATKDKAPAPVQTLNMLNAVSVLALFKRMPDEDCELLNLH 3429
++ D SK +E+ + K+K ++ML+ +VL+LFKRM DEDCELLNL
Sbjct: 181 ILHDCSKTLDGSTEELKEALSHKKEKLS--FSAVHMLDPATVLSLFKRMTDEDCELLNLG 238
Query: 3428 DRPEKMIVTNIPVPPLAIRPSVFVDYGKSTNEDSLTSILRNVINTNSLLREDIEGGAPAF 3249
DRPEK+IVT I VPP+ IRPSVFV G+ +NEDS+T IL+++ NTNS+L+E+++ G
Sbjct: 239 DRPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFM 298
Query: 3248 KCLECWLHLQTQVVEYVNSDAPGLQDSKHRGIIQRLKGKQGRFRCNLSGKRAEFTGRTVI 3069
KC +CW HLQ QVVEY+NSDAP L +S+HRG++QRLKGK GRFR NLSGKR E+TGRTVI
Sbjct: 299 KCFDCWQHLQLQVVEYINSDAPSLPESQHRGLVQRLKGKTGRFRGNLSGKRTEYTGRTVI 358
Query: 3068 SPDPNLKITEVGIPILMARVLTYPERVSHHNIEKLRQCVRNGPFKYPGANYVELPDGTRI 2889
SPDPNL+ITEV IPILMARVLTYPERVS++NIEKLRQC+RNGP K+PGAN++ DGT++
Sbjct: 359 SPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFIIQTDGTKL 418
Query: 2888 FLKFAEKKNVASDLKYGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNE 2709
LK+ +++ A DLKYG +VERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNE
Sbjct: 419 HLKYCDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNE 478
Query: 2708 SVCNPYNADFDGDEMNLHVPQTEEARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSY 2529
SVCNPYNADFDGDEMNLHVPQTEEARTEAL LMGVQNNLCTPKNGEILVASTQDFLTSS+
Sbjct: 479 SVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 538
Query: 2528 LITRRDTFYDRATFSLICSYMGDGMDAIDLPTPSIIKPVELWTGKQVFSVLIRPNAGTRV 2349
L+TR+D FYDR++F+L+CSY+GD M+ IDLPTP+++KP+ELWTGKQ+FSVL+RPNA T+V
Sbjct: 539 LVTRKDNFYDRSSFTLLCSYLGDAMENIDLPTPALVKPIELWTGKQLFSVLVRPNACTKV 598
Query: 2348 YLNLTVKEKIFSKPVGVCPTMCPKDGFVYFRNSELISGQLGKTTLGNGNKDGLFSVLLRD 2169
+LNLTVKEKI+SK TMCP DGFVYFRNSEL+SGQ+GK TLGNGNKDG+FS+L+RD
Sbjct: 599 FLNLTVKEKIYSKS---RETMCPNDGFVYFRNSELLSGQVGKKTLGNGNKDGMFSILVRD 655
Query: 2168 YNSHAAACCMNRLAKLSARWIGNHGFSIGIDDVQPGEHLTQQKKQKIDDGYRECHKFISL 1989
YNSHAAA CMNRLAK SAR+IGNHGFSIG+DDV+PGEHL QQKK+KID+GY+ECH I+
Sbjct: 656 YNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVRPGEHLDQQKKKKIDEGYKECHDLITS 715
Query: 1988 YNEGKLNLQPGCDSAQTLELNITSVLNQIRGQAGDVCMNTLHWRNSPLIMSQCGSKGSPI 1809
+++G L LQPGC++AQTLE IT VLN+IR AG++CM+TLHWRNSPLIMSQCGSKGSPI
Sbjct: 716 FSKGALTLQPGCNAAQTLEHKITHVLNKIREAAGNICMDTLHWRNSPLIMSQCGSKGSPI 775
Query: 1808 NISQMIACVGQQSVGGRRAPNGFINRTLPHFPINSKTPAAKGFVANSFYTGLT------- 1650
NISQM+ CVGQQSVGG RAPNGFI+RTLPHFPINSKTPAAKGFVANSFY GLT
Sbjct: 776 NISQMVVCVGQQSVGGHRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYNGLTATEFFFH 835
Query: 1649 ----------ATEFFFHTMGGREGLVDTAVKTAETGYMSRRLIKGLEDLSLYYDLTVRNA 1500
ATEFFFHTMGGREGLVDTAVKTAETGYMSRRL+KGLEDLS++YD TVRNA
Sbjct: 836 TMGGIYIVLPATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNA 895
Query: 1499 SGGVVQFLYGDDGMDPAKMEGKDGLPLNLDQLFSKVMATCPSRGDEALSPSEILQIMDER 1320
SGG+VQFLYGDDGMDPAKMEG+DG PLNLDQLF KVMATCP RG LSP EILQI++++
Sbjct: 896 SGGIVQFLYGDDGMDPAKMEGEDGKPLNLDQLFMKVMATCPQRGQNTLSPGEILQILNDK 955
Query: 1319 FSKYDASSEGHSSAAFEKLISGFLQERVAALKKTRSTLKLDEDNVGKRDTSIMENVAAKV 1140
S++DASS+ S F++L+ FL++R+ LK TR L LDE++VGK D+SI E++AA +
Sbjct: 956 LSEHDASSDDGCSEKFKQLLKDFLEDRIKLLKSTRRALCLDENHVGK-DSSIEESIAANI 1014
Query: 1139 SGVSLKQLQVFLDICFSRYQLKKLEPXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNV 960
SG+S KQLQVFLD C SRY KK+E GEPGTQMTLKTFHFAGVASMNV
Sbjct: 1015 SGISAKQLQVFLDTCLSRYHSKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNV 1074
Query: 959 TLGVPRIKEIINGAKKISTPIITATLLSDHDDTVARIVKGSIEKTVLGEVAKAIKIVLKS 780
TLGVPRIKEIIN AKKISTPIITA LLS D AR+VKGS+EK VLGEVA+ IKIVLKS
Sbjct: 1075 TLGVPRIKEIINAAKKISTPIITAELLSGKDVLSARVVKGSMEKAVLGEVAEDIKIVLKS 1134
Query: 779 SQPYIAVTLDTDRIVSLQMRISSDSVKHSILNHPKIKLKPDRVHIMSASKLRIFSSEADR 600
SQP + V LD RI L M IS+DSV+ SILNHP+IKLK + V ++ +KLR++ + D+
Sbjct: 1135 SQPNLVVKLDMQRIEDLHMGISADSVQLSILNHPRIKLKSEHVRVIDKAKLRVYPTAIDK 1194
Query: 599 SKLQYELHTLKAMLPKVIVKGIPTVERAVINKQGGKYNLLVEGTNLLAVMGSPGIDPCKT 420
SKL YELH LK+MLPKVIVKGIPTVERAVI++ G KY+LLVEGTNLLAVMG+PG+D KT
Sbjct: 1195 SKLLYELHNLKSMLPKVIVKGIPTVERAVISQTGDKYSLLVEGTNLLAVMGTPGVDAMKT 1254
Query: 419 RSNHVIEVQETLGIEAARKCIINEIQYTMSSHGMSIDTRHMMLLADLMTYKGEVLGITRF 240
+SNH++EV TLGIEAAR+ II+EIQYTM+SHGM+ID+RHMMLLADLMTYKGE+LGITR+
Sbjct: 1255 KSNHIMEVNRTLGIEAARRSIIDEIQYTMTSHGMNIDSRHMMLLADLMTYKGEILGITRY 1314
Query: 239 GISKMKESVLMLASFEKTSEHLFNASFNGRDDEIEGVSECIIMGIPMKLGTGILKVQQRV 60
GI+KMK SVLMLASFEKT+EHLFNAS++GR+D+IEGVSECIIMGIPM+LGTGILKV+QR+
Sbjct: 1315 GIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRL 1374
Query: 59 EQLPELKYAPDPIL 18
+ LPE KY PDPIL
Sbjct: 1375 DHLPEFKYQPDPIL 1388
>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
gi|241937900|gb|EES11045.1| hypothetical protein
SORBIDRAFT_06g021120 [Sorghum bicolor]
Length = 1391
Score = 2025 bits (5246), Expect = 0.0
Identities = 998/1392 (71%), Positives = 1168/1392 (83%), Gaps = 15/1392 (1%)
Frame = -2
Query: 4148 MSRREEKLRCTKEPYIEDVGPRRIKSIRFGMLSGDEIRKLAEVQVWTNRFYDASVKPVPH 3969
M++ EEKLRCTKEP+IEDVG RRIKSIRF +LSG EIRK AEVQVW NR Y +KPVP+
Sbjct: 1 MAKPEEKLRCTKEPFIEDVGTRRIKSIRFSVLSGSEIRKSAEVQVWNNRIYGHDMKPVPN 60
Query: 3968 GLLDPRMGAPNKSSSCSTCHGSHQDCPGHFGYLKLTLPVFNVGYFNSILNILKCICKSCA 3789
GLLDPRMG PNK CSTCHG DCPGHFGYLKL LPVFNVG+FN IL++LKCICKSC+
Sbjct: 61 GLLDPRMGVPNKREKCSTCHGEFSDCPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCS 120
Query: 3788 RILIADKDRIDYLKKMRNPKIDIAQKNAFVKKIRDRCKAGRCPRCGSINGTMKKAKASLA 3609
R+L+ +KDR ++LKKMRNP+ D QK+A +KK+RD+CK CPRC NG +KK +A L
Sbjct: 121 RVLLFEKDRREFLKKMRNPRADALQKSATMKKVRDKCKLSCCPRCDYRNGVVKKGRAGLI 180
Query: 3608 VVEDFSKFAGARSEDYHRGAAATKDKAPAPVQTLNMLNAVSVLALFKRMPDEDCELLNLH 3429
VV D SK +E+ K+K A ++ +L+ +VL+LF+RM DEDCELLNL
Sbjct: 181 VVHDCSKVLDGHTEELKNALQNKKEKVSA--NSVRVLDPATVLSLFRRMTDEDCELLNLG 238
Query: 3428 DRPEKMIVTNIPVPPLAIRPSVFVDYGKSTNEDSLTSILRNVINTNSLLREDIEGGAPAF 3249
DRPEK+IV+ I VPP+ IRPSV V +++NEDS+T IL++++NTNS+L+E + G P
Sbjct: 239 DRPEKLIVSEIAVPPVPIRPSVVVGSSRTSNEDSITVILKSIVNTNSILKETLHTGGPFT 298
Query: 3248 KCLECWLHLQTQVVEYVNSDAPGLQDSKHRGIIQRLKGKQGRFRCNLSGKRAEFTGRTVI 3069
KC +CW +LQ QVVEYVNSDAP L DS+HRG++QRLKGK GRFR NLSGKR E+TGRTVI
Sbjct: 299 KCFDCWQYLQLQVVEYVNSDAPCLPDSQHRGLVQRLKGKTGRFRGNLSGKRTEYTGRTVI 358
Query: 3068 SPDPNLKITEVGIPILMARVLTYPERVSHHNIEKLRQCVRNGPFKYPGANYVELPDGTRI 2889
SPDPNLKITEV IP+LMARVLTYPERVS++NIEKLRQC+RNGPFKYPGAN+V PDG +
Sbjct: 359 SPDPNLKITEVAIPVLMARVLTYPERVSNYNIEKLRQCIRNGPFKYPGANFVTQPDGMKQ 418
Query: 2888 FLKFAEKKNVASDLKYGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNE 2709
LK+ +++ A DLK G IVERHLEDGD+VLFNRQPSLHRMSIMSHRARIMPWRTLRFNE
Sbjct: 419 SLKYGDRRITARDLKCGCIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFNE 478
Query: 2708 SVCNPYNADFDGDEMNLHVPQTEEARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSY 2529
SVCNPYNADFDGDEMNLHVPQTEEARTEAL LMGVQNNLCTPKNGEILVASTQDFLTSS+
Sbjct: 479 SVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 538
Query: 2528 LITRRDTFYDRATFSLICSYMGDGMDAIDLPTPSIIKPVELWTGKQVFSVLIRPNAGTRV 2349
L+TR+DTFYDR++F+L+CSY+GD M+ IDLPTP++IKP+ELWTGKQ+FSVL+RPNA TRV
Sbjct: 539 LVTRKDTFYDRSSFTLLCSYLGDAMENIDLPTPALIKPIELWTGKQLFSVLVRPNAHTRV 598
Query: 2348 YLNLTVKEKIFSKPVG--------VC--PTMCPKDGFVYFRNSELISGQLGKTTLGNGNK 2199
+LNL V+EKI+SK G +C TMCP DG+VYFRNSEL+SGQ+GK TLGNGNK
Sbjct: 599 FLNLAVQEKIYSKKKGKKEAGEETMCGRETMCPNDGYVYFRNSELLSGQVGKATLGNGNK 658
Query: 2198 DGLFSVLLRDYNSHAAACCMNRLAKLSARWIGNHGFSIGIDDVQPGEHLTQQKKQKIDDG 2019
DGL+SVLLRDYNSHAAA CMNRLAK SAR+IGNHGFSIG+DDVQPGEHL +QKK++ID G
Sbjct: 659 DGLYSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNRQKKKEIDGG 718
Query: 2018 YRECHKFISLYNEGKLNLQPGCDSAQTLELNITSVLNQIRGQAGDVCMNTLHWRNSPLIM 1839
Y++CH ISL+ +G L L PGC++AQTLE NIT VLN+IR AG+VCM+TLHWRNSPLIM
Sbjct: 719 YKKCHDLISLFAKGALALHPGCNAAQTLEHNITGVLNEIRSIAGNVCMDTLHWRNSPLIM 778
Query: 1838 SQCGSKGSPINISQMIACVGQQSVGGRRAPNGFINRTLPHFPINSKTPAAKGFVANSFYT 1659
SQCGSKGSPINISQM+ACVGQQSVGGRRAP+GF+NRTLPHFPINSKTPAAKGFVANSFYT
Sbjct: 779 SQCGSKGSPINISQMVACVGQQSVGGRRAPDGFLNRTLPHFPINSKTPAAKGFVANSFYT 838
Query: 1658 GLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLIKGLEDLSLYYDLTVRNASGGVVQF 1479
GLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRL+KGLEDLS++YD TVRNASGG+VQF
Sbjct: 839 GLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQF 898
Query: 1478 LYGDDGMDPAKMEGKDGLPLNLDQLFSKVMATCPSRGDEALSPSEILQIMDERFSKYDAS 1299
LYGDDGMDPAKMEGKDG+PLNLDQLF KVMATCP RG + LSP I Q+++++ ++D S
Sbjct: 899 LYGDDGMDPAKMEGKDGMPLNLDQLFMKVMATCPQRGSDTLSPEAIKQMLEDKLLQHDTS 958
Query: 1298 SEGHSSAAFEKLISGFLQERVAALKKTRSTLKLDEDNVGKRDTSIMENVAAKVSGVSLKQ 1119
S+G S F+K ++ FL +R+ +K TR L L ED+V K+D+ + E+VAA +SG+S KQ
Sbjct: 959 SDGGCSEEFKKNLTEFLDKRIELMKCTRRALHLHEDHVEKKDSCVEESVAAIISGISAKQ 1018
Query: 1118 LQVFLDICFSRYQLKKLEPXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRI 939
LQVFLD C SRYQ KK+E GEPGTQMTLKTFHFAGVASMNVTLGVPRI
Sbjct: 1019 LQVFLDTCLSRYQSKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRI 1078
Query: 938 KEIINGAKKISTPIITATLLSDHDDTVARIVKGSIEKTVLGEVAKAIKIVLKSSQPYIAV 759
KEIIN A+KISTPIITA LLS D ARIVKGS+EK VLGEVA AI+IVLKSSQP + V
Sbjct: 1079 KEIINAARKISTPIITAQLLSKKDVLSARIVKGSMEKAVLGEVAVAIQIVLKSSQPNLIV 1138
Query: 758 TLDTDRIVSLQMRISSDSVKHSILNHPKIKLKPDRVHIMSASKLRIFSSEADRSKLQYEL 579
LD I SL M IS+DSV+ SILNHPKIKLK + V ++ +KLRI+ + D+ KLQ EL
Sbjct: 1139 KLDMQLIESLHMGISADSVQLSILNHPKIKLKSEHVRVIDRAKLRIYPAGTDKRKLQLEL 1198
Query: 578 HTLKAMLPKVIVKGIPTVERAVINK-----QGGKYNLLVEGTNLLAVMGSPGIDPCKTRS 414
H LK++LPKVIVKGIPTVER VI++ + +Y LLVEGTNLLAVMG+PG+D KT+S
Sbjct: 1199 HNLKSILPKVIVKGIPTVERVVIDEVKVKNETERYQLLVEGTNLLAVMGTPGVDATKTKS 1258
Query: 413 NHVIEVQETLGIEAARKCIINEIQYTMSSHGMSIDTRHMMLLADLMTYKGEVLGITRFGI 234
NH++E +TLGIEAAR+ II+EIQYTM SHGM+ID RHMMLLADLMTYKGE+LGITR+GI
Sbjct: 1259 NHIMETNQTLGIEAARRSIIDEIQYTMKSHGMNIDRRHMMLLADLMTYKGEILGITRYGI 1318
Query: 233 SKMKESVLMLASFEKTSEHLFNASFNGRDDEIEGVSECIIMGIPMKLGTGILKVQQRVEQ 54
+KMK SVLMLASFEKTSEHLFNAS++GR+D+IEGVSECIIMGIPM+LGTGILKV+QR++
Sbjct: 1319 AKMKSSVLMLASFEKTSEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRLDH 1378
Query: 53 LPELKYAPDPIL 18
+PE KY PDPIL
Sbjct: 1379 VPEFKYQPDPIL 1390
>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Setaria
italica]
Length = 1397
Score = 1998 bits (5175), Expect = 0.0
Identities = 989/1398 (70%), Positives = 1164/1398 (83%), Gaps = 21/1398 (1%)
Frame = -2
Query: 4148 MSRREEKLRCTKEPYIEDVGPRRIKSIRFGMLSGDEIRKLAEVQVWTNRFYDASVKPVPH 3969
M++ EEKLRCTKEP+IEDVG RRIKSIRF +LSG EIRK AEVQVW +R Y+ +KPVP+
Sbjct: 1 MAKPEEKLRCTKEPFIEDVGARRIKSIRFSVLSGSEIRKSAEVQVWNSRIYEHDMKPVPN 60
Query: 3968 GLLDPRMGAPNKSSS---CSTCHGSHQDCPGHFGYLKLTLPVFNVGYFNSILNILKCICK 3798
GLLD RMG +K + CSTCHG +CPGHFGYLKL LPVFNVG+FN IL++LKCICK
Sbjct: 61 GLLDMRMGLASKKDTELKCSTCHGPFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICK 120
Query: 3797 SCARILIADKDRIDYLKKMRNPKIDIAQKNAFVKKIRDRCKAGRCPRCGSINGTMKKAKA 3618
C+R+L+A+KDR ++LKKMRNP+ D QK+A +KK+RD+CK CPRC NG +KK +
Sbjct: 121 GCSRVLLAEKDRREFLKKMRNPRADALQKSAIMKKVRDKCKLTCCPRCEYKNGVVKKGRV 180
Query: 3617 SLAVVEDFSKFAGARSEDYHRGAAATKDKAPAPVQTLNMLNAVSVLALFKRMPDEDCELL 3438
L V+ D SK +E+ K+K ++ ML+ + L+LF+RM DEDCELL
Sbjct: 181 GLIVIHDCSKILDGHTEELKNALQHKKEKVST--SSVRMLDPATALSLFRRMVDEDCELL 238
Query: 3437 NLHDRPEKMIVTNIPVPPLAIRPSVFVDYGKSTNEDSLTSILRNVINTNSLLREDIEGGA 3258
NL DRPEK+IVT I VPP+ IRPSV V +++NEDS+T+IL++++NTNS+L+E ++ G
Sbjct: 239 NLGDRPEKLIVTEIAVPPVPIRPSVVVGNTRTSNEDSITAILKSIVNTNSILKETLQTGG 298
Query: 3257 PAFKCLECWLHLQTQVVEYVNSDAPGLQDSKHRGIIQRLKGKQGRFRCNLSGKRAEFTGR 3078
KC +CW LQ QVVE+VNSDAP L +S+HRG++QRLKGK GRFR NLSGKR E+TGR
Sbjct: 299 LFSKCFDCWQQLQLQVVEFVNSDAPCLPESQHRGLVQRLKGKTGRFRGNLSGKRTEYTGR 358
Query: 3077 TVISPDPNLKITEVGIPILMARVLTYPERVSHHNIEKLRQCVRNGPFKYPGANYVELPDG 2898
TVISPDPNL+ITEV IP+LMARVLTYPERVS++N+EKLRQC+RNGP+K+PGAN++ PDG
Sbjct: 359 TVISPDPNLRITEVAIPVLMARVLTYPERVSNYNLEKLRQCIRNGPYKHPGANFIITPDG 418
Query: 2897 TRIFLKFAEKKNVASDLKYGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLR 2718
T++ LK+ +++ A DLK GY VERHLEDGD+VLFNRQPSLHRMSIMSHRARIMPWRTLR
Sbjct: 419 TKLSLKYGDRRIHARDLKCGYTVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLR 478
Query: 2717 FNESVCNPYNADFDGDEMNLHVPQTEEARTEALTLMGVQNNLCTPKNGEILVASTQDFLT 2538
FNESVCNPYNADFDGDEMNLHVPQTEEARTEAL LMGVQNNLCTPKNGEILVASTQDFLT
Sbjct: 479 FNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT 538
Query: 2537 SSYLITRRDTFYDRATFSLICSYMGDGMDAIDLPTPSIIKPVELWTGKQVFSVLIRPNAG 2358
SS+L+TR+D FYDR++F+L+CSY+GD M+ IDLPTP++IKP+ELWTGKQ+FSVL+RPNA
Sbjct: 539 SSFLVTRKDAFYDRSSFALLCSYVGDAMENIDLPTPALIKPIELWTGKQLFSVLVRPNAR 598
Query: 2357 TRVYLNLTVKEKIFSKPVG-----------VC--PTMCPKDGFVYFRNSELISGQLGKTT 2217
T+V+LNL VKEKI+SK +C TMCP DG+VYFRNSEL+SGQ+GK T
Sbjct: 599 TKVFLNLAVKEKIYSKKKEKKEGEEEEKETMCGRETMCPNDGYVYFRNSELLSGQVGKAT 658
Query: 2216 LGNGNKDGLFSVLLRDYNSHAAACCMNRLAKLSARWIGNHGFSIGIDDVQPGEHLTQQKK 2037
LGNGNKDG++SVLLRDYNSHAAA CMNRLAK SAR+IGNHGFSIG+DDVQPGEHL +QKK
Sbjct: 659 LGNGNKDGIYSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNRQKK 718
Query: 2036 QKIDDGYRECHKFISLYNEGKLNLQPGCDSAQTLELNITSVLNQIRGQAGDVCMNTLHWR 1857
+KID+GY++CH ISL+ +G L L PGC++AQTLE IT VLN+IR AG+VCM+TLHWR
Sbjct: 719 KKIDEGYKQCHDLISLFAKGALALHPGCNAAQTLEHKITGVLNEIRTAAGNVCMDTLHWR 778
Query: 1856 NSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFINRTLPHFPINSKTPAAKGFV 1677
NSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAP+GFI+RTLPHFPINSKTPAAKGFV
Sbjct: 779 NSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRTLPHFPINSKTPAAKGFV 838
Query: 1676 ANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLIKGLEDLSLYYDLTVRNAS 1497
ANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRL+KGLEDLS++YD TVRNAS
Sbjct: 839 ANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNAS 898
Query: 1496 GGVVQFLYGDDGMDPAKMEGKDGLPLNLDQLFSKVMATCPSRGDEALSPSEILQIMDERF 1317
GG+VQFLYGDDGMDPAKMEGKDG PLNLDQLF KV ATCP RG + LSP +I Q+++++
Sbjct: 899 GGIVQFLYGDDGMDPAKMEGKDGTPLNLDQLFMKVTATCPHRGLDTLSPDDIKQMLEDKL 958
Query: 1316 SKYDASSEGHSSAAFEKLISGFLQERVAALKKTRSTLKLDEDNVGKRDTSIMENVAAKVS 1137
+++ SS+G S F++ + FL+ER+ LK TR L LDE +VGK D+ I E +AA +S
Sbjct: 959 TQHKTSSDGGCSEEFKECLKKFLEERIQLLKCTRKALHLDEKHVGKNDSCIEEIIAANIS 1018
Query: 1136 GVSLKQLQVFLDICFSRYQLKKLEPXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVT 957
G+S KQLQVFLD CFSRY K +E GEPGTQMTLKTFHFAGVASMNVT
Sbjct: 1019 GISAKQLQVFLDTCFSRYNSKAIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVT 1078
Query: 956 LGVPRIKEIINGAKKISTPIITATLLSDHDDTVARIVKGSIEKTVLGEVAKAIKIVLKSS 777
LGVPRIKEIIN AKKISTPIIT LLS D ARIVKG++EK VLGEVA AIKIVLKSS
Sbjct: 1079 LGVPRIKEIINAAKKISTPIITTELLSRKDVLSARIVKGAMEKAVLGEVASAIKIVLKSS 1138
Query: 776 QPYIAVTLDTDRIVSLQMRISSDSVKHSILNHPKIKLKPDRVHIMSASKLRIFSSEADRS 597
QP + V LD I +L M IS+DSV+ SILNHPKIKLK + V ++ +KLRI+ + D+S
Sbjct: 1139 QPNLVVKLDMQLIEALHMGISADSVQLSILNHPKIKLKSEHVRVIDRAKLRIYPAGTDKS 1198
Query: 596 KLQYELHTLKAMLPKVIVKGIPTVERAVIN---KQG--GKYNLLVEGTNLLAVMGSPGID 432
KLQ ELH LKAMLPKVIVKGIPTVER VI+ K+G KYNLLVEGTNLLAVMG+PG+D
Sbjct: 1199 KLQLELHNLKAMLPKVIVKGIPTVERVVIDERKKEGKLEKYNLLVEGTNLLAVMGTPGVD 1258
Query: 431 PCKTRSNHVIEVQETLGIEAARKCIINEIQYTMSSHGMSIDTRHMMLLADLMTYKGEVLG 252
T+SNH++E+ TLGIEAAR+ II+EIQYTM SHGM+ID RHMMLLADLMTYKGEVLG
Sbjct: 1259 ARNTKSNHIMEMNSTLGIEAARRSIIDEIQYTMKSHGMNIDVRHMMLLADLMTYKGEVLG 1318
Query: 251 ITRFGISKMKESVLMLASFEKTSEHLFNASFNGRDDEIEGVSECIIMGIPMKLGTGILKV 72
ITR+GI+KMK SVLMLASFEKTSEHLFNAS++GR+DEIEGVSECIIMGIPM+LGTGILKV
Sbjct: 1319 ITRYGIAKMKTSVLMLASFEKTSEHLFNASYSGREDEIEGVSECIIMGIPMQLGTGILKV 1378
Query: 71 QQRVEQLPELKYAPDPIL 18
+QR++ LPELKY PDPIL
Sbjct: 1379 RQRLDHLPELKYQPDPIL 1396
>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1392
Score = 1957 bits (5071), Expect = 0.0
Identities = 971/1394 (69%), Positives = 1145/1394 (82%), Gaps = 17/1394 (1%)
Frame = -2
Query: 4148 MSRREEKLRCTKEPYIEDVGPRRIKSIRFGMLSGDEIRKLAEVQVWTNRFYDASVKPVPH 3969
M+R EEKLRCTKEP++EDVG RRIKS+RF M SG EIR+ AE QVW NR Y +KPVP+
Sbjct: 1 MARPEEKLRCTKEPFVEDVGTRRIKSMRFSMFSGKEIRQSAETQVWNNRIYGNDMKPVPN 60
Query: 3968 GLLDPRMGAPNKSSSCSTCHGSHQDCPGHFGYLKLTLPVFNVGYFNSILNILKCICKSCA 3789
GLLDPRMGA NK C+TCHGS+ +CPGHFGYLKL LPVFNVG+FN+IL++LK ICK C+
Sbjct: 61 GLLDPRMGAANKFGECATCHGSYHECPGHFGYLKLVLPVFNVGFFNNILDVLKSICKGCS 120
Query: 3788 RILIADKDRIDYLKKMRNPKIDIAQKNAFVKKIRDRCKAGRCPRCGSINGTMKKAKASLA 3609
RIL+ +KD+ ++LKKMRNP+++ K A +KK+RD+CK RCP CG ING KK + L
Sbjct: 121 RILLHEKDQREFLKKMRNPRLEPLHKAALMKKVRDKCKLSRCPSCGYINGVAKKGRPGLL 180
Query: 3608 VVEDFSKFAGARSEDYHRGAAATKDKAPAPVQTLNMLNAVSVLALFKRMPDEDCELLNLH 3429
+V D SK +E+ + K+K + +++ L+ +VL+LFKRM DEDCELLNL
Sbjct: 181 IVHDCSKTLDGSTEELRSALSHKKEKLS--ISSVHTLDPATVLSLFKRMTDEDCELLNLG 238
Query: 3428 DRPEKMIVTNIPVPPLAIRPSVFVDYGKSTNEDSLTSILRNVINTNSLLREDIEGGAPAF 3249
DRPEK+I+T I VPP+ IRPSVFV G+ +NED +T ILRN++NTNS+L+ ++ G P
Sbjct: 239 DRPEKLIITEIAVPPVPIRPSVFVGGGRMSNEDGITCILRNIVNTNSILKGILQNGDPLM 298
Query: 3248 KCLECWLHLQTQVVEYVNSDAPGLQDSKHRGIIQRLKGKQGRFRCNLSGKRAEFTGRTVI 3069
KC +CW LQ QVVEY+NSDAP L D ++RG++QRLKGK GRFR NLSGKR E+TGRTVI
Sbjct: 299 KCFDCWQLLQLQVVEYINSDAPSLTDPQNRGLVQRLKGKTGRFRGNLSGKRTEYTGRTVI 358
Query: 3068 SPDPNLKITEVGIPILMARVLTYPERVSHHNIEKLRQCVRNGPFKYPGANYVELPDGTRI 2889
SPDPNL+ITEV IP+LMARVLTYPERVS++NIEKLRQC+RNGP K+PGAN+V PDGT++
Sbjct: 359 SPDPNLRITEVAIPVLMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFVTQPDGTKL 418
Query: 2888 FLKFAEKKNVASDLKYGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNE 2709
LK+ +++ A DLKYG IVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNE
Sbjct: 419 HLKYCDRRIAARDLKYGCIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNE 478
Query: 2708 SVCNPYNADFDGDEMNLHVPQTEEARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSY 2529
SVCNPYNADFDGDEMNLHVPQTEEARTEAL LMGVQNNLCTPKNGEILVASTQDFLTSS+
Sbjct: 479 SVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 538
Query: 2528 LITRRDTFYDRATFSLICSYMGDGMDAIDLPTPSIIKPVELWTGKQVFSVLIRPNAGTRV 2349
LITR+D FYDR+ F+L+CSY+GD M+ IDLPTP+IIKP+ELWTGKQ+FSVL+RPNA T+V
Sbjct: 539 LITRKDNFYDRSYFTLLCSYLGDAMENIDLPTPAIIKPLELWTGKQLFSVLVRPNACTKV 598
Query: 2348 YLNLTVKEKIFSK-------PVGVC-PTMCPKDGFVYFRNSELISGQLGKTTLGNGNKDG 2193
YLNLTV+EKI+ K V V TMCP DG+VYFRNSEL+SGQ+GK TLGNGNKDG
Sbjct: 599 YLNLTVEEKIYMKRRERDKNAVSVLEETMCPNDGYVYFRNSELLSGQVGKKTLGNGNKDG 658
Query: 2192 LFSVLLRDYNSHAAACCMNRLAKLSARWIGNHGFSIGIDDVQPGEHLTQQKKQKIDDGYR 2013
+FSVL+RDYNSHAAA CMNRLAK SAR+IGNHGFSIG+DDVQPGE L Q+KK+ ID GY
Sbjct: 659 MFSVLVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGESLNQKKKKTIDQGYT 718
Query: 2012 ECHKFISLYNEGK--LNLQPGCDSAQTLELNITSVLNQIRGQAGDVCMNTLHWRNSPLIM 1839
ECH I++Y++G L PGC+ AQTLE+ ++++LNQ+R +AG+ CMNTLHWRNSPLIM
Sbjct: 719 ECHDLIAVYSKGAPGAELHPGCNRAQTLEVRVSAILNQLREKAGEHCMNTLHWRNSPLIM 778
Query: 1838 SQCGSKGSPINISQMIACVGQQSVGGRRAPNGFINRTLPHFPINSKTPAAKGFVANSFYT 1659
SQCGSKGSPINISQM+ CVGQQSVGGRRAP+GFI+RTLPHFPI+SKTPAAKGFVANSFYT
Sbjct: 779 SQCGSKGSPINISQMVVCVGQQSVGGRRAPDGFIDRTLPHFPIHSKTPAAKGFVANSFYT 838
Query: 1658 GLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLIKGLEDLSLYYDLTVRNASGGVVQF 1479
GLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRL+KGLEDLS++YD TVRNAS G+VQF
Sbjct: 839 GLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASSGIVQF 898
Query: 1478 LYGDDGMDPAKMEGKDGLPLNLDQLFSKVMATCPSRGDEALSPSEILQIMDERFSKYDAS 1299
+YGDDGMDP KMEGK G PLNLDQLF KV ATCP RG + LSP I+Q+++++ S+ D S
Sbjct: 899 VYGDDGMDPVKMEGKGGSPLNLDQLFMKVKATCPQRGHDMLSPEAIMQMLNDKLSEQDMS 958
Query: 1298 SEGHSSAAFEKLISGFLQERVAALKKTRSTLKLDEDNVGKRDTSIMENVAAKVSGVSLKQ 1119
S G S F++L++ F ++R+ L+ TR TL LDED+VG +D+SI E +AA +SG+S KQ
Sbjct: 959 S-GGCSDKFKELLTKFFEDRIKMLRSTRRTLHLDEDHVGMKDSSIEERIAANISGISAKQ 1017
Query: 1118 LQVFLDICFSRYQLKKLEPXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRI 939
LQVFLD C SRY K +E GEPGTQMTLKTFHFAGVASMNVTLGVPRI
Sbjct: 1018 LQVFLDTCLSRYHSKIIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRI 1077
Query: 938 KEIINGAKKISTPIITATLLSDHDDTVARIVKGSIEKTVLGEVAKAIKIVLKSSQPYIAV 759
KEIIN AK ISTPIITA LLS D + A VK +EK VLGEVA IKIVLKSSQP + V
Sbjct: 1078 KEIINAAKNISTPIITAELLSGQDMSFAVKVKRYVEKVVLGEVAAVIKIVLKSSQPNLVV 1137
Query: 758 TLDTDRIVSL-QMRISSDSVKHSILNHPKIKLKPDRVHIMSASKLRIFSSEADRSKLQYE 582
LD RI + M ISSDSV+ SI+ HPKIKLK + V ++ +KLRI+ + D+SKLQ E
Sbjct: 1138 KLDMQRIEAQGYMGISSDSVQQSIIRHPKIKLKSEHVRVIDGAKLRIYPTGTDKSKLQLE 1197
Query: 581 LHTLKAMLPKVIVKGIPTVERAVIN------KQGGKYNLLVEGTNLLAVMGSPGIDPCKT 420
LHTLK+MLPKVIVKGIPTVERAV+N K +YNLLVEGTNLL V+G+PG+D KT
Sbjct: 1198 LHTLKSMLPKVIVKGIPTVERAVVNPVKRPDKTLDRYNLLVEGTNLLKVLGTPGVDAKKT 1257
Query: 419 RSNHVIEVQETLGIEAARKCIINEIQYTMSSHGMSIDTRHMMLLADLMTYKGEVLGITRF 240
+SNH++EV +TLGIEAAR+ II+EI+YT S+ M ID RHMMLLADLMTYKGEVLGITRF
Sbjct: 1258 KSNHIMEVNQTLGIEAARRSIIDEIRYTFESNNMIIDQRHMMLLADLMTYKGEVLGITRF 1317
Query: 239 GISKMKESVLMLASFEKTSEHLFNASFNGRDDEIEGVSECIIMGIPMKLGTGILKVQQRV 60
GI KMK SVLMLASFEKT EHLFNAS++GR+DEIEGVSECIIMGIPM LG+GILKV+QR+
Sbjct: 1318 GIVKMKSSVLMLASFEKTLEHLFNASYSGREDEIEGVSECIIMGIPMTLGSGILKVRQRL 1377
Query: 59 EQLPELKYAPDPIL 18
+ LPE Y PD I+
Sbjct: 1378 DHLPEFNYQPDAII 1391
>ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1400
Score = 1842 bits (4772), Expect = 0.0
Identities = 930/1402 (66%), Positives = 1114/1402 (79%), Gaps = 24/1402 (1%)
Frame = -2
Query: 4151 AMSRREEKLRCTKEPYIEDVGPRRIKSIRFGMLSGDEIRKLAEVQVWTNRFYDASVKPVP 3972
A R EEKLRCTKEP+++D P+RIKS+RF LSG EIR+ A QVW R YD+S+KPVP
Sbjct: 3 AQWRPEEKLRCTKEPFVDDASPQRIKSMRFCTLSGKEIRQSAAAQVWNTRIYDSSLKPVP 62
Query: 3971 HGLLDPRMGAPNKSSSCSTCHGSHQDCPGHFGYLKLTLPVFNVGYFNSILNILKCICKSC 3792
+GLLDPRMGA +K C+TCHGS+ +CPGHFGY+KL LPVFNVGYFN IL +LKCICK C
Sbjct: 63 NGLLDPRMGASDKCGECATCHGSYTECPGHFGYIKLALPVFNVGYFNKILAVLKCICKGC 122
Query: 3791 ARILIADKDRIDYLKKMRNPKIDIAQKNAFVKKIRDRCKAGRCPRCGSINGTMKKA---- 3624
+R+L+ + ++LKKMRNP+ D +++ + K+RD+C+ RC CG ING +KK
Sbjct: 123 SRVLLTENIHQEFLKKMRNPRAD---RSSIMIKVRDKCRPSRCSWCGYINGIVKKEGRRA 179
Query: 3623 -KASLAVVEDFSKFAGARSEDYHRGAAATKDKAPAPVQTLNMLNAVSVLALFKRMPDEDC 3447
K ++ +V D SK A +E+ + K+K + +++ L+ V+VL+LF+R+ DEDC
Sbjct: 180 LKQTVVIVHDCSKNLDASTEEVRSVLSHKKEKLS--ITSVHTLDPVTVLSLFRRITDEDC 237
Query: 3446 ELLNLHDRPEKMIVTNIPVPPLAIRPSVFVDYGKSTNEDSLTSILRNVINTNSLLREDIE 3267
ELL + +RPE +I+T+I VPP+ IRPS FV +NEDS+TSILRN++N NS L+ I+
Sbjct: 238 ELLAIGERPENLIITDIAVPPVPIRPSRFVAGTTMSNEDSITSILRNIVNANSHLKLTIQ 297
Query: 3266 GGAPAFKCLECWLHLQTQVVEYVNSDAPGLQDSKHRGIIQRLKGKQGRFRCNLSGKRAEF 3087
G KC W LQ V+EY+NSDA LQDSK G+IQRLKGK GRFR NLSGKR E
Sbjct: 298 DGQVPMKCFTWWEQLQDNVIEYINSDASSLQDSKDCGLIQRLKGKTGRFRGNLSGKRTEH 357
Query: 3086 TGRTVISPDPNLKITEVGIPILMARVLTYPERVSHHNIEKLRQCVRNGPFKYPGANYVEL 2907
TGRTVISPDPNL+ITEV IP+LMARVLTYPERV+++NIEKLRQC+RNGP K+PGAN++
Sbjct: 358 TGRTVISPDPNLRITEVAIPVLMARVLTYPERVTYYNIEKLRQCIRNGPHKHPGANFIIQ 417
Query: 2906 PDGTRIFLKFAEKKNVASDLKYGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWR 2727
PD T++ L + ++ A DLKYG IVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWR
Sbjct: 418 PDETKLHLNYCDRSRAARDLKYGCIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWR 477
Query: 2726 TLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALTLMGVQNNLCTPKNGEILVASTQD 2547
TLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEA LMGVQ+NLCTPKNGEILVASTQD
Sbjct: 478 TLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAFLLMGVQSNLCTPKNGEILVASTQD 537
Query: 2546 FLTSSYLITRRDTFYDRATFSLICSYMGDGMDAIDLPTPSIIKPVELWTGKQVFSVLIRP 2367
FLTSS+L+TR+DTFYDR+ F+L+CSY+GD M+ IDLPTP+IIKPVELWTGKQ+FSVL+RP
Sbjct: 538 FLTSSFLVTRKDTFYDRSYFTLLCSYLGDAMENIDLPTPAIIKPVELWTGKQLFSVLVRP 597
Query: 2366 NAGTRVYLNLTVKEKIF-------SKPVGVC-PTMCPKDGFVYFRNSELISGQLGKTTLG 2211
NA T+V+LNLTV+EK++ K + V TMCP DGFVYFRNSEL+SGQLGK TLG
Sbjct: 598 NACTKVFLNLTVEEKVYIKHKERDKKAITVLEETMCPNDGFVYFRNSELLSGQLGKKTLG 657
Query: 2210 NGNKDGLFSVLLRDYNSHAAACCMNRLAKLSARWIGNHGFSIGIDDVQPGEHLTQQKKQK 2031
NGNK+G+FSVLLRDYNSHAAA CMNRLAK SAR+IGNHGFSIG+DDVQPG+ L ++KK
Sbjct: 658 NGNKEGMFSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGQSLNKKKKVI 717
Query: 2030 IDDGYRECHKFISLYNEGKLNLQPGCDSAQTLELNITSVLNQIRGQAGDVCMNTLHWRNS 1851
ID+GY EC+K I+LY++G L QPGC AQTLE I+ VLN++R AGD CM+TLHWRNS
Sbjct: 718 IDEGYEECNKLIALYSKGHLKPQPGCSRAQTLESQISCVLNKLRETAGDDCMSTLHWRNS 777
Query: 1850 PLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFINRTLPHFPINSKTPAAKGFVAN 1671
PLIMSQCGSKGSPINISQM+ CVGQQSVGG RAPNGFI+RTLPHFPINSKTPAAKGFVAN
Sbjct: 778 PLIMSQCGSKGSPINISQMVVCVGQQSVGGCRAPNGFIDRTLPHFPINSKTPAAKGFVAN 837
Query: 1670 SFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLIKGLEDLSLYYDLTVRNASGG 1491
SFYTGLTA+EFFFHTMGGREGLVDTAVKTA+TGY+SRRL+KGLEDLS++YD TVRNASGG
Sbjct: 838 SFYTGLTASEFFFHTMGGREGLVDTAVKTADTGYLSRRLMKGLEDLSVFYDQTVRNASGG 897
Query: 1490 VVQFLYGDDGMDPAKMEGKDGLPLNLDQLFSKVMATCPSRGDEALSPSEILQIMDERFSK 1311
+VQF+YGDDGMDP KMEGK G PLNLDQLF KV ATCP RG + LSP ILQ+ ++ K
Sbjct: 898 IVQFVYGDDGMDPVKMEGKGGSPLNLDQLFMKVKATCPQRGHDTLSPDVILQMFNDTLFK 957
Query: 1310 YDASSEGHSSAAFEKLISGFLQERVAALKKTRSTLKLDEDNVGKRDTSIMENVAAKVSGV 1131
+ SS G S +++++ FL++RV L+ TR L +DED+VG+RD+S+ E +AA +SG+
Sbjct: 958 QETSS-GRCSDKLKEMLTKFLEDRVKMLRSTRRALHIDEDHVGRRDSSVEECIAADISGI 1016
Query: 1130 SLKQLQVFLDICFSRYQLKKLEPXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLG 951
S KQLQVFLD CFSRY K +E GEPGTQMTLKTFHFAGVASMNVTLG
Sbjct: 1017 SAKQLQVFLDTCFSRYHSKIIEAGASVGPIGAHSIGEPGTQMTLKTFHFAGVASMNVTLG 1076
Query: 950 VPRIKEIINGAKKISTPIITATLLSDHDDTVARIVKGSIEKTVLGEVAKAIKIVLKSSQP 771
VPRIKEIIN AKK STPIIT LLS D + A VK SIEK VLGEVA AI IV K +
Sbjct: 1077 VPRIKEIINAAKKTSTPIITTELLSGQDKSFAVKVKSSIEKVVLGEVAAAINIVFKETDS 1136
Query: 770 YIAVTLDTDRIVSL-QMRISSDSVKHSILNHPKI----KLKPDRVHIMSASKLRIFSSEA 606
+ V LD +RI + M ISSDSV+ SILNH +I KL + V ++ +KLRI ++
Sbjct: 1137 NLVVKLDMERIEAQGYMGISSDSVRLSILNHRRIRLELKLTSEHVCVVDQAKLRIHAAGK 1196
Query: 605 DRSKLQYELHTLKAMLPKVIVKGIPTVERAVIN------KQGGKYNLLVEGTNLLAVMGS 444
+S L ELH LK+MLPKVIVKGIPTVERAV+N K +YNLLVEGTNLLAV+G+
Sbjct: 1197 GKSGLLLELHNLKSMLPKVIVKGIPTVERAVVNPVFRHDKTFDRYNLLVEGTNLLAVLGT 1256
Query: 443 PGIDPCKTRSNHVIEVQETLGIEAARKCIINEIQYTMSSHGMSIDTRHMMLLADLMTYKG 264
PG+D KT+SNH++EV +TLGIEAAR+ II+EI+YT ++ M ID RHMMLLAD+MT KG
Sbjct: 1257 PGVDAKKTKSNHIMEVSQTLGIEAARRSIIDEIRYTFENNNMMIDLRHMMLLADVMTSKG 1316
Query: 263 EVLGITRFGISKMKESVLMLASFEKTSEHLFNASFNGRDDEIEGVSECIIMGIPMKLGTG 84
EVL +T GI+KMK SVLMLASFE+T +HLFNAS+ GR DEIEGVSEC+IMG+PMK GTG
Sbjct: 1317 EVLPMTAHGIAKMKTSVLMLASFERTMDHLFNASYAGRVDEIEGVSECVIMGMPMKPGTG 1376
Query: 83 ILKVQQRVEQLPELKYAPDPIL 18
ILKV+QR+ LPE +Y PDP++
Sbjct: 1377 ILKVKQRLPDLPEFQYQPDPLV 1398
>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
vinifera]
Length = 1383
Score = 1835 bits (4754), Expect = 0.0
Identities = 925/1386 (66%), Positives = 1105/1386 (79%), Gaps = 13/1386 (0%)
Frame = -2
Query: 4136 EEKLRCTKEPYIEDVGPRRIKSIRFGMLSGDEIRKLAEVQVWTNRFYDASVKPVPHGLLD 3957
++ ++ TKEPYIEDVGPR+I+SIRF + S EI K AEVQVW +YDA+ KP+ +GLLD
Sbjct: 2 KDGIQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLLD 61
Query: 3956 PRMGAPNKSSSCSTCHGSHQDCPGHFGYLKLTLPVFNVGYFNSILNILKCICKSCARILI 3777
PRMG NK+ +C+TC G+ +DCPGH GYL L LPV+NVGY ++I++ILKCICKSC+R+L+
Sbjct: 62 PRMGPANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVLL 121
Query: 3776 ADKDRIDYLKKMRNPKIDIAQKNAFVKKIRDRC-------KAGRCPRCGSINGTMKKAKA 3618
+K DYLKKMR+ K++ +K +KKI +C KA +C RCG +NG +KKA +
Sbjct: 122 DEKASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAVS 181
Query: 3617 SLAVVEDFSKFAGARSEDYHRGAAATKDKAPAPVQTLNMLNAVSVLALFKRMPDEDCELL 3438
L ++ D SK A E+ + TK+ + A +++LN V VL+LFKRM DEDC+LL
Sbjct: 182 VLGIIHDRSKIADGSLEECSSAISHTKE-SKASFSVVDILNPVKVLSLFKRMMDEDCDLL 240
Query: 3437 NLHDRPEKMIVTNIPVPPLAIRPSVFVDYGKSTNEDSLTSILRNVINTNSLLREDIEGGA 3258
NL +RPEK+++TNI VPP+AIRPSVF+D G +NE+ +T L+ +I N+ L ++++
Sbjct: 241 NLAERPEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTG 300
Query: 3257 PAFKCLECWLHLQTQVVEYVNSDAPGLQDSKHR-----GIIQRLKGKQGRFRCNLSGKRA 3093
KCL W +LQ +V +Y+NSD G+ + G +QRLKGKQGRFR NLSGKR
Sbjct: 301 STSKCLAGWDYLQIEVAQYINSDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRV 360
Query: 3092 EFTGRTVISPDPNLKITEVGIPILMARVLTYPERVSHHNIEKLRQCVRNGPFKYPGANYV 2913
E+TGRTVISPDPNLKITEV IPILMA++L+YPERVSHHNIEKLRQC+ NGPFKYPGA +
Sbjct: 361 EYTGRTVISPDPNLKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGPFKYPGAKLI 420
Query: 2912 ELPDGTRIFLKFAEKKNVASDLKYGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMP 2733
PDG+ L F+ +K A +LKYGYIVERHLEDGD+VLFNRQPSLHRMSIM HRARIMP
Sbjct: 421 RYPDGSMRSLMFSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 480
Query: 2732 WRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALTLMGVQNNLCTPKNGEILVAST 2553
WRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEAL LMGVQNNLCTPKNGEILVAST
Sbjct: 481 WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVAST 540
Query: 2552 QDFLTSSYLITRRDTFYDRATFSLICSYMGDGMDAIDLPTPSIIKPVELWTGKQVFSVLI 2373
QDFLTSS+LITR+DTFYDRA FSL+CSYMGDGMD +DLPTP+IIKPVELWTGKQ+F+VL+
Sbjct: 541 QDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPAIIKPVELWTGKQLFNVLL 600
Query: 2372 RPNAGTRVYLNLTVKEKIFSKPVGVCPTMCPKDGFVYFRNSELISGQLGKTTLGNGNKDG 2193
RP+A RVYLNLTV EK ++K G TMCP DGFVYFRNSELISGQLGK TLGNGNKDG
Sbjct: 601 RPHANVRVYLNLTVMEKTYNKRRGK-ETMCPSDGFVYFRNSELISGQLGKATLGNGNKDG 659
Query: 2192 LFSVLLRDYNSHAAACCMNRLAKLSARWIGNHGFSIGIDDVQPGEHLTQQKKQKIDDGYR 2013
LFSVLLRDYN+HAAA CMNRLAKLSARWIGNHGFSIGIDDVQPG L QK ++I++GY
Sbjct: 660 LFSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGGLLNDQKSKRIEEGYE 719
Query: 2012 ECHKFISLYNEGKLNLQPGCDSAQTLELNITSVLNQIRGQAGDVCMNTLHWRNSPLIMSQ 1833
CH+ I YN+GKL LQPGC++AQTLE IT VLN+IR +VCM LHWRNSPLIMSQ
Sbjct: 720 NCHELIQQYNKGKLKLQPGCNAAQTLEAEITGVLNKIRETTANVCMEELHWRNSPLIMSQ 779
Query: 1832 CGSKGSPINISQMIACVGQQSVGGRRAPNGFINRTLPHFPINSKTPAAKGFVANSFYTGL 1653
CGSKGSPINISQMIACVGQQSVGGRRAP+GFI+RTLPHFP SKTP AKGFVA+SFYTGL
Sbjct: 780 CGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRTLPHFPRKSKTPDAKGFVASSFYTGL 839
Query: 1652 TATEFFFHTMGGREGLVDTAVKTAETGYMSRRLIKGLEDLSLYYDLTVRNASGGVVQFLY 1473
TATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLS+ YD TVRNA+G +VQFLY
Sbjct: 840 TATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSIQYDETVRNANGSIVQFLY 899
Query: 1472 GDDGMDPAKMEGKDGLPLNLDQLFSKVMATCPSRGDEALSPSEILQIMDERFSKYDASSE 1293
GDDGMDPA+MEGKDG PLN ++LF KV ATCP+ + +LS +I + + +R +++ S+E
Sbjct: 900 GDDGMDPARMEGKDGFPLNFNRLFLKVKATCPAGENASLSALQIEETV-KRLKEHNTSAE 958
Query: 1292 GHSSAAFEKLISGFLQERVAALKKTRSTLKLDEDNVGKRDTSIMENVAAKVSGVSLKQLQ 1113
G S AF+ +SGFL+E K TR L L ++VG+ + I E A +SG++ KQLQ
Sbjct: 959 G-CSDAFKTNLSGFLEECKEKFKNTREALGLHGEHVGEENLDIQEKFAKNISGITSKQLQ 1017
Query: 1112 VFLDICFSRYQLKKLEPXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIKE 933
VFLD C SRYQLK++E GEPGTQMTLKTFHFAGVASMNVTLGVPRIKE
Sbjct: 1018 VFLDTCISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKE 1077
Query: 932 IINGAKKISTPIITATLLSDHDDTVARIVKGSIEKTVLGEVAKAIKIVLKSSQPYIAVTL 753
IINGAK+ISTPIITA L +++ AR+VKG IE+T LG+VAK+IKIVL S IAV L
Sbjct: 1078 IINGAKRISTPIITAALECNNNVKTARMVKGRIERTTLGQVAKSIKIVLTSRLALIAVAL 1137
Query: 752 DTDRIVSLQMRISSDSVKHSILNHPKIKLKPDRVHIMSASKLRIFSSEADRSKLQYELHT 573
D + I + Q+ I S+ V+ SIL + +IKLK + ++ A KL + + DRS + +ELH
Sbjct: 1138 DMEGIQASQLSIDSNIVRESILRNRRIKLKQQHIKVLDAGKLEV-HPQGDRSTIHFELHA 1196
Query: 572 LKAMLPKVIVKGIPTVERAVINKQGG-KYNLLVEGTNLLAVMGSPGIDPCKTRSNHVIEV 396
LK +LP V+VKGI TVERAVINK KYNLLVEGT L VMG+ G+ +T SNH+IEV
Sbjct: 1197 LKNLLPTVVVKGIETVERAVINKDNKVKYNLLVEGTGLQTVMGTEGVIGRETTSNHIIEV 1256
Query: 395 QETLGIEAARKCIINEIQYTMSSHGMSIDTRHMMLLADLMTYKGEVLGITRFGISKMKES 216
Q+TLGIEAARKCIINEIQYTM+SHGMSID RHMMLLADLMT++GEVLGITRFGI KM +S
Sbjct: 1257 QQTLGIEAARKCIINEIQYTMASHGMSIDIRHMMLLADLMTFRGEVLGITRFGIQKMDKS 1316
Query: 215 VLMLASFEKTSEHLFNASFNGRDDEIEGVSECIIMGIPMKLGTGILKVQQRVEQLPELKY 36
VLMLASFEKT++HLFNAS +GRDD+IEGVSECIIMGIPM+LGTGILKV+QR++Q+PEL Y
Sbjct: 1317 VLMLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQLGTGILKVRQRLQQVPELSY 1376
Query: 35 APDPIL 18
DPI+
Sbjct: 1377 GLDPII 1382
>ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [Amborella trichopoda]
gi|548832896|gb|ERM95665.1| hypothetical protein
AMTR_s00023p00196820 [Amborella trichopoda]
Length = 1383
Score = 1763 bits (4566), Expect = 0.0
Identities = 900/1388 (64%), Positives = 1080/1388 (77%), Gaps = 11/1388 (0%)
Frame = -2
Query: 4148 MSRREEKLRCTKEPYIEDVGPRRIKSIRFGMLSGDEIRKLAEVQVWTNRFYDAS-VKPVP 3972
M +E TK+P++ED+GPR+IKS++F MLSG EI K AE QV+ +Y+ + +KP
Sbjct: 1 MDSEKEAFNFTKKPFVEDIGPRKIKSVQFCMLSGPEIVKAAETQVYKRDYYNRTDLKPAE 60
Query: 3971 HGLLDPRMGAPNKSSSCSTCHGSHQDCPGHFGYLKLTLPVFNVGYFNSILNILKCICKSC 3792
HG+LD RMG KS SC+TC G Q CPGHFGYLKL LPVF+VGYF + + +L+CICKSC
Sbjct: 61 HGVLDTRMGFSTKSGSCATCFGDFQTCPGHFGYLKLALPVFHVGYFRTTIIVLQCICKSC 120
Query: 3791 ARILIADKDRIDYLKKMRNPKIDIAQKNAFVKKIRDRCKAGR-CPRCGSINGTMKKAKAS 3615
ARIL+ +++R +LKK+RNP+ ++ QKN FVKK+ D+CK R CPRCG NG +KKA +
Sbjct: 121 ARILLFEEERKQFLKKIRNPRAELHQKNDFVKKVIDKCKRVRICPRCGDYNGVVKKAGPT 180
Query: 3614 LAVVEDFSKFAGARSEDYHRGAAATKDKAPAPVQTLNMLNAVSVLALFKRMPDEDCELLN 3435
+ D SK + + A + + + + L LALF+RM DEDC+LL
Sbjct: 181 FRISHDRSKANYDKLTKECKTAISQTKYSNSDFNMVENLTPQRALALFERMVDEDCDLLY 240
Query: 3434 LHDRPEKMIVTNIPVPPLAIRPSVFVDYGKSTNEDSLTSILRNVINTNSLLREDIEGGAP 3255
L+DRPEK+I+T+I VPP IRP+ G NE+ LT+ L ++ N L + + G
Sbjct: 241 LYDRPEKLIITHIAVPPAGIRPTY--QSGSRLNENELTTKLWEIVQINHTLIDHVNKGNL 298
Query: 3254 AFKCLECWLHLQTQVVEYVNSDAPGL----QDSKHRG-IIQRLKGKQGRFRCNLSGKRAE 3090
++ W+ LQ +V Y+NS+ P L Q SK G ++QRLKGKQGRFR NL GKR +
Sbjct: 299 PQYYMDTWVLLQVRVALYINSELPSLPLNYQPSKFEGGLVQRLKGKQGRFRSNLEGKRVD 358
Query: 3089 FTGRTVISPDPNLKITEVGIPILMARVLTYPERVSHHNIEKLRQCVRNGPFKYPGANYVE 2910
FTGRTVISPDPNLKITEV IP LMA++LTY ERV+ HNIEKLRQCVRNGP KYPGAN+V
Sbjct: 359 FTGRTVISPDPNLKITEVAIPRLMAQILTYKERVTIHNIEKLRQCVRNGPVKYPGANFV- 417
Query: 2909 LPDGTRIFLKFAEKKNVASDLKYGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPW 2730
+ G + L++ KK A +LK+G VERHLEDG+IVLFNRQPSLHRMSIM HRAR+MPW
Sbjct: 418 ISGGDTLSLRYGNKKRKADELKFGDFVERHLEDGEIVLFNRQPSLHRMSIMCHRARVMPW 477
Query: 2729 RTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALTLMGVQNNLCTPKNGEILVASTQ 2550
RTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEAL LMGVQ+NLCTPKNGEILVASTQ
Sbjct: 478 RTLRFNESVCNPYNADFDGDEMNIHVPQTEEARTEALMLMGVQHNLCTPKNGEILVASTQ 537
Query: 2549 DFLTSSYLITRRDTFYDRATFSLICSYMGDGMDAIDLPTPSIIKPVELWTGKQVFSVLIR 2370
DFLTSSYLITR+DTFYDRATFSL+CSYMGDGM+ IDLPTP+++KPVELWTGKQ+FSVLIR
Sbjct: 538 DFLTSSYLITRKDTFYDRATFSLMCSYMGDGMENIDLPTPALLKPVELWTGKQLFSVLIR 597
Query: 2369 PNAGTRVYLNLTVKEKIFSKPVGVCPTMCPKDGFVYFRNSELISGQLGKTTLGNGNKDGL 2190
P+A +VY+NL++ EK +SK TMC DGFVY RNSELISGQLGK TLGNGNKDGL
Sbjct: 598 PHAHMKVYVNLSLMEKNYSKGG---ETMCANDGFVYIRNSELISGQLGKATLGNGNKDGL 654
Query: 2189 FSVLLRDYNSHAAACCMNRLAKLSARWIGNHGFSIGIDDVQPGEHLTQQKKQKIDDGYRE 2010
FSVLLRDYNSHAAA CMNRLAKLSARWIGNHGFSIGIDDV PG HLT+QK+++I GY
Sbjct: 655 FSVLLRDYNSHAAASCMNRLAKLSARWIGNHGFSIGIDDVLPGSHLTKQKEEQIKGGYSN 714
Query: 2009 CHKFISLYNEGKLNLQPGCDSAQTLELNITSVLNQIRGQAGDVCMNTLHWRNSPLIMSQC 1830
C FI Y++GKL+L+PGC++AQTLE IT VLN IR A VCM LHWRNSPLIMSQC
Sbjct: 715 CDAFIDAYDKGKLSLKPGCNAAQTLEAEITRVLNGIRDAAAKVCMEELHWRNSPLIMSQC 774
Query: 1829 GSKGSPINISQMIACVGQQSVGGRRAPNGFINRTLPHFPINSKTPAAKGFVANSFYTGLT 1650
GSKGSPINISQMIACVGQQSVGGRRAPNGFI+R+LPHFP N KTPAAKGFVANSFYTGLT
Sbjct: 775 GSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKTPAAKGFVANSFYTGLT 834
Query: 1649 ATEFFFHTMGGREGLVDTAVKTAETGYMSRRLIKGLEDLSLYYDLTVRNASGGVVQFLYG 1470
A EFFFHTMGGREGLVDTAVKTA+TGY+SRRLIK LEDLS +YD TVRN+SG ++QF YG
Sbjct: 835 AAEFFFHTMGGREGLVDTAVKTADTGYLSRRLIKSLEDLSTHYDDTVRNSSGTIIQFSYG 894
Query: 1469 DDGMDPAKMEGKDGLPLNLDQLFSKVMATCPSRGDEALSPSEILQIMDERFSKYDASSEG 1290
DDGMDPAKMEGK G+PLNLD+LF K+ ATCP+ +LSPSEI I+++R SK+D + E
Sbjct: 895 DDGMDPAKMEGKSGVPLNLDRLFMKIKATCPASVSASLSPSEISTIVNDRLSKHDMTPER 954
Query: 1289 HSSAAFEKLISGFLQERVAALKKTRSTLKLDEDNVGKRDTSIMENVAAKVSGVSLKQLQV 1110
S AF++ +S F+++R+ A+KKTR+ L LDED V K S +E+VAA +SG+S +QL+V
Sbjct: 955 GCSMAFKEELSNFIKKRMDAIKKTRNMLGLDEDCVDKEKFSGLEHVAANISGISRQQLRV 1014
Query: 1109 FLDICFSRYQLKKLEPXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEI 930
FL+ C SRY LK++E GEPGTQMTLKTFHFAGVASMN+TLGVPRIKEI
Sbjct: 1015 FLETCISRYHLKRIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEI 1074
Query: 929 INGAKKISTPIITATLLSDHDDTVARIVKGSIEKTVLGEVAKAIKIVLKSSQPYIAVTLD 750
+ +KKISTPIITATL+ D+D+ ARIVKG IEKT+LGEVAK +KI + +Q I +TLD
Sbjct: 1075 LGASKKISTPIITATLVCDNDEKSARIVKGRIEKTLLGEVAKTVKISVTPTQASINITLD 1134
Query: 749 TDRIVSLQMRISSDSVKHSILNHPKIKLKPDRVHIMSA----SKLRIFSSEADRSKLQYE 582
RI +LQM I + +V SI + K K+ ++ + KL+I E R ++ Y
Sbjct: 1135 MKRIEALQMAIDAKTVADSISENLKAKVSRTKLKVKPTFTLPDKLKILLPEIGRKEVLYS 1194
Query: 581 LHTLKAMLPKVIVKGIPTVERAVINKQGGKYNLLVEGTNLLAVMGSPGIDPCKTRSNHVI 402
LH L+++LPK+IVKGIPTVERAVIN GK NLLVEGTNLLAVMG+PG+D T SNH++
Sbjct: 1195 LHLLQSLLPKIIVKGIPTVERAVINNVKGKLNLLVEGTNLLAVMGTPGVDGRNTTSNHIV 1254
Query: 401 EVQETLGIEAARKCIINEIQYTMSSHGMSIDTRHMMLLADLMTYKGEVLGITRFGISKMK 222
EV+ TLGIEAARK II+EIQYTM SHGMSID RHMMLLADLMT++G VLGI RFGI+KMK
Sbjct: 1255 EVEGTLGIEAARKSIIDEIQYTMKSHGMSIDLRHMMLLADLMTFRGLVLGIQRFGITKMK 1314
Query: 221 ESVLMLASFEKTSEHLFNASFNGRDDEIEGVSECIIMGIPMKLGTGILKVQQRVEQLPEL 42
ESVLMLASFE+T++ LF+A+ GR D I GVSECIIMG+PM++GTGIL VQQR EQL +L
Sbjct: 1315 ESVLMLASFERTADILFDATTRGRVDTIAGVSECIIMGVPMQIGTGILSVQQRPEQLAKL 1374
Query: 41 KYAPDPIL 18
Y PDPI+
Sbjct: 1375 TYGPDPII 1382
>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
X1 [Solanum tuberosum]
Length = 1394
Score = 1751 bits (4535), Expect = 0.0
Identities = 893/1400 (63%), Positives = 1075/1400 (76%), Gaps = 23/1400 (1%)
Frame = -2
Query: 4148 MSRREEKLRCTKEPYIEDVGPRRIKSIRFGMLSGDEIRKLAEVQVWTNRFYDASVKPVPH 3969
M R + L+ TK+PYIEDVGPR+IKSI+F + S EI K AEV+V+ +Y+++ KP+ +
Sbjct: 1 MKRIQNSLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVYLGLYYESTKKPIQN 60
Query: 3968 GLLDPRMGAPNKSSSCSTCHGSHQDCPGHFGYLKLTLPVFNVGYFNSILNILKCICKSCA 3789
GLLDPRMG PNK+ C TCHG+ ++CPGH+GYL L LPV+NVGY ++++ILKCICK C+
Sbjct: 61 GLLDPRMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCS 120
Query: 3788 RILIADKDRIDYLKKMRNPKIDIAQKNAFVKKIRDRC-------KAGRCPRCGSINGTMK 3630
IL+ DK+R D LKKMRNP+ + +K+ KK+ RC K C +CG +NG +K
Sbjct: 121 SILLDDKERRDILKKMRNPRTEFLKKSELHKKVVKRCNAMAGGQKTATCSKCGYMNGMVK 180
Query: 3629 KAKASLAVVEDFSKFAGARSEDYHRGAAATKDKAPAPVQTLNMLNAVSVLALFKRMPDED 3450
K + + + G R D A + K + A V L+ V +LFK M DED
Sbjct: 181 KLQLKITHEQ------GNRILDEINVAISDKRELRASVSVPPELDPKVVYSLFKNMSDED 234
Query: 3449 CELLNLHDRPEKMIVTNIPVPPLAIRPSVFVDYGKSTNEDSLTSILRNVINTNSLLREDI 3270
CELL L DRPEK++VT+IPVPP+AIRPSVFVD G +NE+ +T L+ +I N+ L +++
Sbjct: 235 CELLYLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEM 294
Query: 3269 EGGAPAFKCLECWLHLQTQVVEYVNSDAPGLQ-----DSKHRGIIQRLKGKQGRFRCNLS 3105
+P K L W+ LQ +V +Y+NSD G+ G QRLKGKQGRFR NLS
Sbjct: 295 SDSSPV-KSLNLWIDLQMEVAQYINSDVRGVPLHMQAQRPLSGFTQRLKGKQGRFRGNLS 353
Query: 3104 GKRAEFTGRTVISPDPNLKITEVGIPILMARVLTYPERVSHHNIEKLRQCVRNGPFKYPG 2925
GKR E+TGRTVISPDPNLKITEV IPILMA++LTYPERVS HNIEKLRQCVRNGP KYPG
Sbjct: 354 GKRVEYTGRTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPNKYPG 413
Query: 2924 ANYVELPDGTRIFLKFAEKKNVASDLKYGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRA 2745
A ++ PDG+ I L F +K A +LK+GYIV+RHLEDGDIVLFNRQPSLHRMSIMSHRA
Sbjct: 414 AKFIRHPDGSEISLMFTSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRA 473
Query: 2744 RIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALTLMGVQNNLCTPKNGEIL 2565
RIMPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEAL LMGVQNNLCTPK+GEIL
Sbjct: 474 RIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEIL 533
Query: 2564 VASTQDFLTSSYLITRRDTFYDRATFSLICSYMGDGMDAIDLPTPSIIKPVELWTGKQVF 2385
VASTQDFLTSS+LITR+DTFY+RA+FSLICSYMGD MD DLP+P+ IKPVELWTGKQ+F
Sbjct: 534 VASTQDFLTSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQLF 593
Query: 2384 SVLIRPNAGTRVYLNLTVKEKIFSKPVGVCPTMCPKDGFVYFRNSELISGQLGKTTLGNG 2205
+L+RP + RVY+NLTV EK +S G TMCP DGFVYFRNSELISGQLGK TLGNG
Sbjct: 594 HMLLRPYSKMRVYVNLTVTEKSYS---GKGETMCPSDGFVYFRNSELISGQLGKATLGNG 650
Query: 2204 NKDGLFSVLLRDYNSHAAACCMNRLAKLSARWIGNHGFSIGIDDVQPGEHLTQQKKQKID 2025
NKDGL+SVLLRDY SHAAA CMNRLAKLSARWIGNHGFSIGIDDV PGE+L +QK+ +I
Sbjct: 651 NKDGLYSVLLRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENLVKQKQGEIH 710
Query: 2024 DGYRECHKFISLYNEGKLNLQPGCDSAQTLELNITSVLNQIRGQAGDVCMNTLHWRNSPL 1845
Y++C I+ +NEGKL +QPGCD+AQTLE +T LN++R G +CM L WRNSPL
Sbjct: 711 RNYKKCEDCITQFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALDWRNSPL 770
Query: 1844 IMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFINRTLPHFPINSKTPAAKGFVANSF 1665
IMSQCGSKGSPINISQMIACVGQQSVGGRRAP+GFI+R+LPHFP SK PAAKGFVA+SF
Sbjct: 771 IMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSF 830
Query: 1664 YTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLIKGLEDLSLYYDLTVRNASGGVV 1485
+ GL+ATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDL++YYD TVRNAS +V
Sbjct: 831 FDGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIV 890
Query: 1484 QFLYGDDGMDPAKMEGKDGLPLNLDQLFSKVMATCPSRGDEALSPSEILQIMDERFSKYD 1305
QF+YGDDGMDP++ME K G PLN +LF KV ATCP G+++LS SEI +I++ER S +D
Sbjct: 891 QFMYGDDGMDPSQMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVNERLSYHD 950
Query: 1304 ASSEGHSSAAFEKLISGFLQERVA-ALKKTRSTLKLDEDNVGKRDTSIMENVAAKVSGVS 1128
+ EG S AF +S FL + +A LK R +L L E+ D +E +A +SG++
Sbjct: 951 MTPEGGCSEAFRSSLSDFLIKNLAETLKNLRESLLLGEEQYEGDDRGYLEKIALNISGIT 1010
Query: 1127 LKQLQVFLDICFSRYQLKKLEPXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGV 948
+QLQVFL+ C SRY LK+LE GEPGTQMTLKTFHFAGVASMNVTLGV
Sbjct: 1011 KRQLQVFLNTCISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGV 1070
Query: 947 PRIKEIINGAKKISTPIITATLLSDHDDTVARIVKGSIEKTVLGEVAKAIKIVLKSSQPY 768
PRIKEIIN AKKI+TPIIT LLS + T AR++K IEKT+LG+VAK++KIVL S
Sbjct: 1071 PRIKEIINAAKKITTPIITTKLLSAANLTAARMIKARIEKTLLGQVAKSVKIVLASRLAS 1130
Query: 767 IAVTLDTDRIVSLQMRISSDSVKHSILNHPKIKLKPDRVHIMSASKLRIFSSEADRSKLQ 588
IA++LD + I Q+ I + +VK SIL KIKLK ++ +++ KL +F +A++ KL
Sbjct: 1131 IAISLDMETIQVSQLCIDAYTVKQSILQTSKIKLKEHQIKVLNPRKLEVF-PQANKDKLH 1189
Query: 587 YELHTLKAMLPKVIVKGIPTVERAVINKQ----------GGKYNLLVEGTNLLAVMGSPG 438
+ELH LK LP V+VKGI TV+RAV+NK+ G Y LLVEGT LLAVMG G
Sbjct: 1190 FELHRLKNKLPAVVVKGITTVQRAVVNKEQQKDRKNDVKGETYELLVEGTGLLAVMGIEG 1249
Query: 437 IDPCKTRSNHVIEVQETLGIEAARKCIINEIQYTMSSHGMSIDTRHMMLLADLMTYKGEV 258
+D T+SNH++EVQ TLGIEAAR II+EI YTMSSHGM+ID RHMMLLADLMTYKGEV
Sbjct: 1250 VDGRYTKSNHIMEVQNTLGIEAARVSIIDEINYTMSSHGMTIDLRHMMLLADLMTYKGEV 1309
Query: 257 LGITRFGISKMKESVLMLASFEKTSEHLFNASFNGRDDEIEGVSECIIMGIPMKLGTGIL 78
LGITR G+ KMK+SVLMLASFEKT++HLFNAS NGRDD+IEGV+ECIIMGIPM +GTG+
Sbjct: 1310 LGITRHGVQKMKDSVLMLASFEKTTDHLFNASVNGRDDKIEGVTECIIMGIPMTIGTGMF 1369
Query: 77 KVQQRVEQLPELKYAPDPIL 18
K++QRVEQ+ EL Y PDPI+
Sbjct: 1370 KLRQRVEQV-ELNYQPDPII 1388
>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Solanum
lycopersicum]
Length = 1390
Score = 1750 bits (4533), Expect = 0.0
Identities = 894/1400 (63%), Positives = 1078/1400 (77%), Gaps = 23/1400 (1%)
Frame = -2
Query: 4148 MSRREEKLRCTKEPYIEDVGPRRIKSIRFGMLSGDEIRKLAEVQVWTNRFYDASVKPVPH 3969
M+R +E L+ TK+PYIEDVGPR+IKSI+F + S EI KLAEV+V+ +Y+++ KP+ +
Sbjct: 1 MNRAQESLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKLAEVEVYLGLYYESTKKPIQN 60
Query: 3968 GLLDPRMGAPNKSSSCSTCHGSHQDCPGHFGYLKLTLPVFNVGYFNSILNILKCICKSCA 3789
GLLDPRMG PNKS C TCHG+ ++CPGH+GYL L LPV+NVGY ++++ILKCICK C+
Sbjct: 61 GLLDPRMGPPNKSGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCS 120
Query: 3788 RILIADKDRIDYLKKMRNPKIDIAQKNAFVKKIRDRC-------KAGRCPRCGSINGTMK 3630
IL+ DK+R D LKKMRNP+ + +K+ K++ RC K C +CG +NG +K
Sbjct: 121 SILLDDKERRDILKKMRNPRTEFLKKSELHKRVVKRCNAMAGGQKTATCSKCGYMNGMVK 180
Query: 3629 KAKASLAVVEDFSKFAGARSEDYHRGAAATKDKAPAPVQTLNMLNAVSVLALFKRMPDED 3450
K + + + G R D A + K + A V ++ V +LFK M DED
Sbjct: 181 KLQLKITHEQ------GNRILDEINVAISDKRELRASVSVPPEIDPKVVYSLFKNMSDED 234
Query: 3449 CELLNLHDRPEKMIVTNIPVPPLAIRPSVFVDYGKSTNEDSLTSILRNVINTNSLLREDI 3270
CELL L DRPEK++VT+IPVPP+AIRPSVFVD G +NE+ +T L+ +I N+ L +++
Sbjct: 235 CELLYLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEM 294
Query: 3269 EGGAPAFKCLECWLHLQTQVVEYVNSDAPG--LQDSKHR---GIIQRLKGKQGRFRCNLS 3105
+P K L W+ LQ +V +Y+NSD G LQ R G QRLKGKQGRFR NLS
Sbjct: 295 SDSSPV-KSLNQWIDLQMEVAQYINSDVRGVPLQMQPPRPLSGFTQRLKGKQGRFRGNLS 353
Query: 3104 GKRAEFTGRTVISPDPNLKITEVGIPILMARVLTYPERVSHHNIEKLRQCVRNGPFKYPG 2925
GKR E+TGRTVISPDPNLKITEV IPILMA++LTYPERVS HNIEKLRQCVRNGP KYPG
Sbjct: 354 GKRVEYTGRTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPNKYPG 413
Query: 2924 ANYVELPDGTRIFLKFAEKKNVASDLKYGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRA 2745
A ++ PDG + L F+ +K A +LK+GYIV+RHLEDGDIVLFNRQPSLHRMSIMSHRA
Sbjct: 414 AKFIRHPDGNEMSLMFSSRKRYADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRA 473
Query: 2744 RIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALTLMGVQNNLCTPKNGEIL 2565
RIMPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEAL LMGVQNNLCTPK+GEIL
Sbjct: 474 RIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEIL 533
Query: 2564 VASTQDFLTSSYLITRRDTFYDRATFSLICSYMGDGMDAIDLPTPSIIKPVELWTGKQVF 2385
VASTQDFLTSS+LITR+DTFY+RA+FSLICSYMGD MD DLP+P+ IKPVELWTGKQ+F
Sbjct: 534 VASTQDFLTSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQLF 593
Query: 2384 SVLIRPNAGTRVYLNLTVKEKIFSKPVGVCPTMCPKDGFVYFRNSELISGQLGKTTLGNG 2205
VL+RP + RVY+NLT+ EK +S G TMC DGFVYFRNSELISGQLGK TLGNG
Sbjct: 594 HVLLRPYSKMRVYVNLTLTEKSYS---GKGETMCSSDGFVYFRNSELISGQLGKATLGNG 650
Query: 2204 NKDGLFSVLLRDYNSHAAACCMNRLAKLSARWIGNHGFSIGIDDVQPGEHLTQQKKQKID 2025
NKDGL+SVLLRDY SHAAA CMNRLAKLSARWIGNHGFSIGIDDV PGE+L +QK+ +I
Sbjct: 651 NKDGLYSVLLRDYESHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENLVKQKQGEIH 710
Query: 2024 DGYRECHKFISLYNEGKLNLQPGCDSAQTLELNITSVLNQIRGQAGDVCMNTLHWRNSPL 1845
Y++C I+ +NEGKL +QPGCD+AQTLE +T LN++R G +CM L WRNSPL
Sbjct: 711 RNYKKCEDCITQFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALDWRNSPL 770
Query: 1844 IMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFINRTLPHFPINSKTPAAKGFVANSF 1665
IMSQCGSKGSPINISQMIACVGQQSVGGRRAP+GFI+R+LPHFP SK PAAKGFVA+SF
Sbjct: 771 IMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSF 830
Query: 1664 YTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLIKGLEDLSLYYDLTVRNASGGVV 1485
+ GL+ATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDL++YYD TVRNAS +V
Sbjct: 831 FDGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIV 890
Query: 1484 QFLYGDDGMDPAKMEGKDGLPLNLDQLFSKVMATCPSRGDEALSPSEILQIMDERFSKYD 1305
QF+YGDDGMDP++ME K G PLN +LF KV ATCP G+++LS SEI +I++ER S +D
Sbjct: 891 QFMYGDDGMDPSRMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVNERLSYHD 950
Query: 1304 ASSEGHSSAAFEKLISGFLQERVA-ALKKTRSTLKLDEDNVGKRDTSIMENVAAKVSGVS 1128
+ EG S AF +S FL + +A LK R +L L E+ D +E + +SG++
Sbjct: 951 MTPEGGCSEAFRASLSDFLIKSLAETLKNLRESLLLGEEQYEGDDRGYLEKIVLNISGIT 1010
Query: 1127 LKQLQVFLDICFSRYQLKKLEPXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGV 948
KQLQVFL+ C SRY LK+LE GEPGTQMTLKTFHFAGVASMNVTLGV
Sbjct: 1011 KKQLQVFLNTCISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGV 1070
Query: 947 PRIKEIINGAKKISTPIITATLLSDHDDTVARIVKGSIEKTVLGEVAKAIKIVLKSSQPY 768
PRIKEIIN AKKI+TPIITA LLS + T AR++K IEKT+LG+VAK++KIVL S
Sbjct: 1071 PRIKEIINAAKKITTPIITAKLLSAGNLTAARMIKARIEKTLLGQVAKSVKIVLASRLAS 1130
Query: 767 IAVTLDTDRIVSLQMRISSDSVKHSILNHPKIKLKPDRVHIMSASKLRIFSSEADRSKLQ 588
IA++LD + I Q+ I + +VK SIL KIKLK ++ +++ KL +F +A++ KL
Sbjct: 1131 IAISLDMETIQVSQLCIDAYTVKQSILQTSKIKLKEHQIKVLNPRKLEVF-PQANKDKLH 1189
Query: 587 YELHTLKAMLPKVIVKGIPTVERAVINKQ----------GGKYNLLVEGTNLLAVMGSPG 438
+ELH LK LP V+VKGI TV+RAV+NK+ G Y LLVEGT LLAVMG G
Sbjct: 1190 FELHRLKNKLPAVVVKGITTVQRAVVNKEQQKDRKNDVKGETYELLVEGTGLLAVMGIEG 1249
Query: 437 IDPCKTRSNHVIEVQETLGIEAARKCIINEIQYTMSSHGMSIDTRHMMLLADLMTYKGEV 258
+D T+SNH++EVQ TLGIEAAR II+EI YTMSSHGM+ID RHMMLLADLMTYKGEV
Sbjct: 1250 VDGRYTKSNHIMEVQHTLGIEAARVSIIDEINYTMSSHGMTIDLRHMMLLADLMTYKGEV 1309
Query: 257 LGITRFGISKMKESVLMLASFEKTSEHLFNASFNGRDDEIEGVSECIIMGIPMKLGTGIL 78
LGITR G+ KMK+SVLMLASFEKT++HLFNAS NGRDD+IEGV+ECIIMGIPM +GTG+
Sbjct: 1310 LGITRHGVQKMKDSVLMLASFEKTTDHLFNASVNGRDDKIEGVTECIIMGIPMTIGTGMF 1369
Query: 77 KVQQRVEQLPELKYAPDPIL 18
K++QRVE + EL Y PDP++
Sbjct: 1370 KLRQRVEHV-ELNYQPDPMM 1388
>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
sativus]
Length = 1400
Score = 1745 bits (4520), Expect = 0.0
Identities = 893/1404 (63%), Positives = 1071/1404 (76%), Gaps = 32/1404 (2%)
Frame = -2
Query: 4133 EKLRCTKEPYIEDVGPRRIKSIRFGMLSGDEIRKLAEVQVWTNRFYDASVKPVPHGLLDP 3954
E L TK+PYIEDVGPR+IKS++F SG EI KLAEVQV+ +YD + KP+ GLLDP
Sbjct: 7 EGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDGGLLDP 66
Query: 3953 RMGAPNKSSSCSTCHGSHQDCPGHFGYLKLTLPVFNVGYFNSILNILKCICKSCARILIA 3774
RMG NK C+TCH + DCPGH+GY+ L LPVFNVGYF +IL ILKCICKSC+RIL+
Sbjct: 67 RMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLE 126
Query: 3773 DKDRIDYLKKMRNPKIDIAQKNAFVKKIRDRC-------KAGRCPRCGSINGTMKKAKAS 3615
+K D+L+KMRNPK++ +K VKKI +C K+ RC RCG +NG++KKA +
Sbjct: 127 EKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGSVKKAVSM 186
Query: 3614 LAVVE--DFSKFAGARSEDYHRGAAATKDKAPAPVQTLNMLNAVSVLALFKRMPDEDCEL 3441
L ++ SK AG SED +AP V ++LN VL LF+RM DEDCEL
Sbjct: 187 LGILHYRARSKDAGVVSEDL---------RAPYNVSN-DILNPFRVLCLFQRMSDEDCEL 236
Query: 3440 LNLHDRPEKMIVTNIPVPPLAIRPSVFVDYGKSTNEDSLTSILRNVINTNSLLREDIEGG 3261
L L +RPEK+I+TN+ VPP+AIRPSV +D G +NE+ +T L+ +I N+ + +++
Sbjct: 237 LFLSNRPEKLIITNVLVPPIAIRPSVIMD-GSQSNENDITERLKRIIQQNASVSQELSTS 295
Query: 3260 APAFKCLECWLHLQTQVVEYVNSDAPGLQDSKH-----RGIIQRLKGKQGRFRCNLSGKR 3096
KCLE W LQ++V + +NSD G+ S G +QRLKGKQGRFR NL GKR
Sbjct: 296 NSQAKCLESWDMLQSEVAQLINSDVRGIPFSMQVSKPLAGFVQRLKGKQGRFRGNLCGKR 355
Query: 3095 AEFTGRTVISPDPNLKITEVGIPILMARVLTYPERVSHHNIEKLRQCVRNGPFKYPGANY 2916
EFTGRTVISPDPNLKITEV +PI MAR+LTYPERV+ HNIEKLRQCV NGP KYPGA
Sbjct: 356 VEFTGRTVISPDPNLKITEVAVPIHMARILTYPERVTRHNIEKLRQCVSNGPDKYPGARM 415
Query: 2915 VELPDGTRIFLKFAEKKNVASDLKYGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIM 2736
+ DG+ L + +K +A +LKYG IVERHLEDGD+VLFNRQPSLHRMSIM HR R+M
Sbjct: 416 LRHLDGSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVM 475
Query: 2735 PWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALTLMGVQNNLCTPKNGEILVAS 2556
PWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEA+ LMGVQNNLCTPKNGEILVAS
Sbjct: 476 PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVAS 535
Query: 2555 TQDFLTSSYLITRRDTFYDRATFSLICSYMGDGMDAIDLPTPSIIKPVELWTGKQVFSVL 2376
TQDFLTSS+LITR+DTFYDRA FSL+CSYMGDGMD +DLPTP+++KP+ELWTGKQ+FSVL
Sbjct: 536 TQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALVKPIELWTGKQLFSVL 595
Query: 2375 IRPNAGTRVYLNLTVKEKIFSKPVG---VCPTMCPKDGFVYFRNSELISGQLGKTTLGNG 2205
+RP+A +VYLNLTVKEK +SK G TMCP DGFVYFRNSELISGQ+GK TLGNG
Sbjct: 596 VRPHASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNG 655
Query: 2204 NKDGLFSVLLRDYNSHAAACCMNRLAKLSARWIGNHGFSIGIDDVQPGEHLTQQKKQKID 2025
NKDGL+SVLLRDY +HAAA CMNRLAKLSARWIGNHGFSIGIDDVQPG+ L ++K+ I
Sbjct: 656 NKDGLYSVLLRDYKAHAAAVCMNRLAKLSARWIGNHGFSIGIDDVQPGDQLVKKKQTTIL 715
Query: 2024 DGYRECHKFISLYNEGKLNLQPGCDSAQTLELNITSVLNQIRGQAGDVCMNTLHWRNSPL 1845
+GYR+C K I+L+N G L + GCD+AQ+LE IT +LN IR +VCM LHWRNSPL
Sbjct: 716 EGYRDCDKQINLFNTGNLPPEAGCDAAQSLESKITQILNGIREATANVCMQNLHWRNSPL 775
Query: 1844 IMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFINRTLPHFPINSKTPAAKGFVANSF 1665
IMSQCGSKGSPINISQM+ACVGQQSVGGRRAP+GFI+R+LPHF +KTPAAKGFVANSF
Sbjct: 776 IMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAAKGFVANSF 835
Query: 1664 YTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLIKGLEDLSLYYDLTVRNASGGVV 1485
Y+GLTATEFFFHTMGGREGLVDTAVKTA+TGYMSRRLIK LEDLS++YD +VRNA G +V
Sbjct: 836 YSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGCIV 895
Query: 1484 QFLYGDDGMDPAKMEGKDGLPLNLDQLFSKVMATCPSRGDEALSPSEILQIMDERFSKYD 1305
QF YGDDGMDPA+MEGK G PLN ++LF K ATCPS G++ LSPSE + +++R SK D
Sbjct: 896 QFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPSDGNKILSPSEFSETVEDRLSKDD 955
Query: 1304 ASSEGHSSAAFEKLISGFLQERVAALKKTRSTLKLDEDNV--------GKRDTSIMEN-V 1152
AS E S AF + FL + V A KK+ TL D ++ D ++ N V
Sbjct: 956 ASPECGCSPAFVGSLKIFLNKYVEAQKKSWGTLLADNESAVDKSIISSSDNDNIVIRNKV 1015
Query: 1151 AAKVSGVSLKQLQVFLDICFSRYQLKKLEPXXXXXXXXXXXXGEPGTQMTLKTFHFAGVA 972
++GV+ +QLQVFLD C SRY KK+E GEPGTQMTLKTFHFAGVA
Sbjct: 1016 VQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVA 1075
Query: 971 SMNVTLGVPRIKEIINGAKKISTPIITATLLSDHDDTVARIVKGSIEKTVLGEVAKAIKI 792
SMNVTLGVPRIKEIINGAK+ISTPI+TA L D + +AR+VK IEKT LG++AK I+I
Sbjct: 1076 SMNVTLGVPRIKEIINGAKRISTPIVTAALTHDDNVNIARMVKARIEKTNLGQIAKCIQI 1135
Query: 791 VLKSSQPYIAVTLDTDRIVSLQMRISSDSVKHSILNHPKIKLKPDRVHIMSASKLRIFSS 612
V+ S I + LD ++I ++ + ++ VK +IL PK+KLK + ++++ KLR+
Sbjct: 1136 VMSSRSALIEIKLDMEKIRDAELYVDANVVKQAILVTPKLKLKHEHINVLDDRKLRVLPQ 1195
Query: 611 EADRSKLQYELHTLKAMLPKVIVKGIPTVERAVINKQ------GGKYNLLVEGTNLLAVM 450
+ADR+KL + LH LK MLP V+VKGI TV RAVI ++ K++LLVEGT L AVM
Sbjct: 1196 DADRNKLHFNLHFLKNMLPGVVVKGIKTVGRAVIKEEKDKARNAKKFSLLVEGTGLQAVM 1255
Query: 449 GSPGIDPCKTRSNHVIEVQETLGIEAARKCIINEIQYTMSSHGMSIDTRHMMLLADLMTY 270
G+ G+D C T+SNH+IEVQ+ LGIEAARKCII EI+YTM SHGMSID RHMMLL DLMT+
Sbjct: 1256 GTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMTF 1315
Query: 269 KGEVLGITRFGISKMKESVLMLASFEKTSEHLFNASFNGRDDEIEGVSECIIMGIPMKLG 90
+GEVLGITRFGI KM +SVLMLASFEKT++HLFNAS NGRDD+IEGVSEC+IMGIPM LG
Sbjct: 1316 RGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPLG 1375
Query: 89 TGILKVQQRVEQLPELKYAPDPIL 18
TG+LKV+QRV +L Y P IL
Sbjct: 1376 TGMLKVRQRVSVPQQLPYGPPAIL 1399
>gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao]
Length = 1395
Score = 1735 bits (4493), Expect = 0.0
Identities = 888/1398 (63%), Positives = 1063/1398 (76%), Gaps = 31/1398 (2%)
Frame = -2
Query: 4118 TKEPYIEDVGPRRIKSIRFGMLSGDEIRKLAEVQVWTNRFYDASVKPVPHGLLDPRMGAP 3939
TK PYIEDVGPR+IKSI+F MLS EI K AEVQV+ +YD +P+ GLLDPRMG
Sbjct: 6 TKRPYIEDVGPRKIKSIQFSMLSDSEIAKAAEVQVYQALYYDPKSRPIEGGLLDPRMGPA 65
Query: 3938 NKSSSCSTCHGSHQDCPGHFGYLKLTLPVFNVGYFNSILNILKCICKSCARILIADKDRI 3759
NKS C+TCHG+ DCPGH+GYL L LPV+NVGY ++IL+ILKCICKSC+RI++ +K
Sbjct: 66 NKSGKCATCHGNFADCPGHYGYLSLALPVYNVGYLSTILDILKCICKSCSRIILDEKLCK 125
Query: 3758 DYLKKMRNPKIDIAQKNAFVKKIRDRC------KAGRCPRCGSINGTMKKAKASLAVVED 3597
DYLK+MR+PKID +K +K I +C KA +C RCG +NGT+KKA A L ++ D
Sbjct: 126 DYLKRMRSPKIDALKKGDIMKSIVKKCSAMASSKAVKCWRCGYVNGTVKKAVAMLGIIHD 185
Query: 3596 FSKFAGARSEDYHRGAAATKDKAPAPVQTLNMLNAVSVLALFKRMPDEDCELLNLHDRPE 3417
SK E++ + TK+ + +LN V VL+LFKRM D DCELL L DRPE
Sbjct: 186 RSKINDNSLEEFRSAISHTKESKASFNVATYVLNPVKVLSLFKRMTDLDCELLYLSDRPE 245
Query: 3416 KMIVTNIPVPPLAIRPSVFVDYGKSTNEDSLTSILRNVINTNSLLREDIEGGAPAFKCLE 3237
K+I+TNI VPP+ IRPSV +D G +NE+ +T L+ +I N+ LR+++ AFKCL
Sbjct: 246 KLIITNIAVPPIPIRPSVIMD-GSQSNENDITERLKRIIQANASLRQELVETNAAFKCLG 304
Query: 3236 CWLHLQTQVVEYVNSDAPGLQDSKH-----RGIIQRLKGKQGRFRCNLSGKRAEFTGRTV 3072
W LQ +V +Y+NSD G+ S G +QR+KGK GRFR NLSGKR E+TGRTV
Sbjct: 305 GWEMLQVEVAQYINSDVRGVPFSMQVSKPLSGFVQRIKGKHGRFRGNLSGKRVEYTGRTV 364
Query: 3071 ISPDPNLKITEVGIPILMARVLTYPERVSHHNIEKLRQCVRNGPFKYPGANYVELPDGTR 2892
ISPDPNLKITEV IPI MAR+LTYPERVS+HNIEKLRQCVRNGP KYPGA V PDG+
Sbjct: 365 ISPDPNLKITEVAIPIHMARILTYPERVSNHNIEKLRQCVRNGPSKYPGARMVRYPDGSA 424
Query: 2891 IFLKFAEKKNVASDLKYGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFN 2712
L +K +A +LK+G +V+RHLEDGDIVLFNRQPSLHRMSIM HRARIMPWRTLRFN
Sbjct: 425 RLLIGDYRKRLADELKFGCVVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRTLRFN 484
Query: 2711 ESVCNPYNADFDGDEMNLHVPQTEEARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSS 2532
ESVCNPYNADFDGDEMN+HVPQTEEARTEAL LMGVQNNLCTPKNGEILVASTQDFLTSS
Sbjct: 485 ESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSS 544
Query: 2531 YLITRRDTFYDRATFSLICSYMGDGMDAIDLPTPSIIKPVELWTGKQVFSVLIRPNAGTR 2352
+LITR+D FYDRA FSLICSYMGDGMD IDLPTP+++KP+ELWTGKQ+FSVL+RP+A R
Sbjct: 545 FLITRKDIFYDRAAFSLICSYMGDGMDLIDLPTPALLKPIELWTGKQLFSVLLRPHASVR 604
Query: 2351 VYLNLTVKEKIFSKPVGV--------CPTMCPKDGFVYFRNSELISGQLGKTTLGNGNKD 2196
VYLNL VKE+ +SK + TMCP DGFVY RNSELI GQLGK TLGNGNKD
Sbjct: 605 VYLNLIVKERNYSKKIIKRIGNKEIEVETMCPDDGFVYIRNSELICGQLGKATLGNGNKD 664
Query: 2195 GLFSVLLRDYNSHAAACCMNRLAKLSARWIGNHGFSIGIDDVQPGEHLTQQKKQKIDDGY 2016
GL+SVLLRDYN+HAAA CMNRLAKLSARWIGNHGFSIGIDDVQPG+ L +K I Y
Sbjct: 665 GLYSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGKRLNDEKALTISGDY 724
Query: 2015 RECHKFISLYNEGKLNLQPGCDSAQTLELNITSVLNQIRGQAGDVCMNTLHWRNSPLIMS 1836
++C + I +NEGKL +PG D+AQTLE N+T++LN IR + G VCM LHWRNSPLIMS
Sbjct: 725 KKCDEEIQTFNEGKLKPKPGYDAAQTLEANVTAILNNIRDKTGKVCMKELHWRNSPLIMS 784
Query: 1835 QCGSKGSPINISQMIACVGQQSVGGRRAPNGFINRTLPHFPINSKTPAAKGFVANSFYTG 1656
QCGSKGS INISQMIACVGQQSVGGRRAPNGFI+R+LPHF SKTPAAKGFVANSFY+G
Sbjct: 785 QCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRSLPHFHRGSKTPAAKGFVANSFYSG 844
Query: 1655 LTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLIKGLEDLSLYYDLTVRNASGGVVQFL 1476
LTATEFFFHTM GREGLVDTAVKTAETGYMSRRLIK LEDLS++YD TVRNASG +VQF+
Sbjct: 845 LTATEFFFHTMAGREGLVDTAVKTAETGYMSRRLIKALEDLSIHYDNTVRNASGCIVQFI 904
Query: 1475 YGDDGMDPAKMEGKDGLPLNLDQLFSKVMATCPSRGDEALSPSEILQIMDERFSKYDASS 1296
YGDDGMDPA MEGK G PLN D+L KV ATCP + L I+Q+++E+ +K+D +
Sbjct: 905 YGDDGMDPACMEGKSGFPLNFDRLLMKVKATCPPIEQKCLHVGSIMQMLEEQLAKHDPA- 963
Query: 1295 EGHSSAAFEKLISGFLQERVAALKKTRSTLKLDEDNVGKRDTSIMENVAAKVSGVSLKQL 1116
G S AF+K + GFL+ + L + + N + + I+E V K+SG+S +QL
Sbjct: 964 -GVCSEAFKKSLKGFLKSQTNELDRVMKLV-----NNCAQKSEILEKVGHKISGISDRQL 1017
Query: 1115 QVFLDICFSRYQLKKLEPXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIK 936
+VF+ C SRY+ K +E GEPGTQMTLKTFHFAGVASMN+T GVPRIK
Sbjct: 1018 EVFVSTCISRYRSKVIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIK 1077
Query: 935 EIINGAKKISTPIITATLLSDHDDTVARIVKGSIEKTVLGEVAKAIKIVLKSSQPYIAVT 756
EIIN AK+ISTP+ITA L D + +A+IVKG IEKTVLG+VAK+IKIV+ S + +T
Sbjct: 1078 EIINAAKRISTPVITAELEFDDNPNIAQIVKGRIEKTVLGQVAKSIKIVITSRSASVVIT 1137
Query: 755 LDTDRIVSLQMRISSDSVKHSILNHPKIKLKPDRVHIMSASKLRIFSSEADRSKLQYELH 576
LD + I+ ++ I ++ VK SIL PKIKLK V ++ KL + ADRS++ +ELH
Sbjct: 1138 LDMEIILDAELYIDANIVKESILQTPKIKLKEQHVKVLDGRKLEVV-PPADRSQIHFELH 1196
Query: 575 TLKAMLPKVIVKGIPTVERAVI---NKQGGK---------YNLLVEGTNLLAVMGSPGID 432
+LK +LP V+VKGI TVER V+ NK+ + LLVEGT L AVMG GID
Sbjct: 1197 SLKNLLPLVVVKGIKTVERTVVYDKNKEKKNQKEEETTKHFQLLVEGTGLQAVMGIEGID 1256
Query: 431 PCKTRSNHVIEVQETLGIEAARKCIINEIQYTMSSHGMSIDTRHMMLLADLMTYKGEVLG 252
+T SNHV+E+++ LGIEAARKCII+EI TM HGM+ID RHMMLLAD+MT++GEVLG
Sbjct: 1257 GRRTWSNHVMEMEQILGIEAARKCIIDEIAQTMEHHGMTIDRRHMMLLADVMTFRGEVLG 1316
Query: 251 ITRFGISKMKESVLMLASFEKTSEHLFNASFNGRDDEIEGVSECIIMGIPMKLGTGILKV 72
ITRFGI KM +S+LMLASFE+T++HLFNA+ NGRDD+IEGV+ECIIMGIPM++GTGILKV
Sbjct: 1317 ITRFGIQKMDKSILMLASFERTADHLFNAAVNGRDDKIEGVTECIIMGIPMQIGTGILKV 1376
Query: 71 QQRVEQLPELKYAPDPIL 18
QRV+ P L+Y PDP+L
Sbjct: 1377 IQRVDPPPMLRYGPDPVL 1394
>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
X1 [Citrus sinensis] gi|568870034|ref|XP_006488217.1|
PREDICTED: DNA-directed RNA polymerase III subunit
rpc1-like isoform X2 [Citrus sinensis]
Length = 1404
Score = 1731 bits (4483), Expect = 0.0
Identities = 893/1408 (63%), Positives = 1064/1408 (75%), Gaps = 31/1408 (2%)
Frame = -2
Query: 4148 MSRREEKLRCTKEPYIEDVGPRRIKSIRFGMLSGDEIRKLAEVQVWTNRFYDASVKPVPH 3969
+ ++ + + TK+PYIEDVGPR+I+SI+F M+S EI K AEVQV+ ++Y ++ P+
Sbjct: 5 LQQKSQSIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRVPIEG 64
Query: 3968 GLLDPRMGAPNKSSSCSTCHGSHQDCPGHFGYLKLTLPVFNVGYFNSILNILKCICKSCA 3789
GLLDPRMG NKS +C+TCHG +CPGH+GYL L LPV+NVGY ++IL+ILKCICK C+
Sbjct: 65 GLLDPRMGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLSTILDILKCICKYCS 124
Query: 3788 RILIADKDRIDYLKKMRNPKIDIAQKNAFVKKIRDRC-----KAGRCPRCGSINGTMKKA 3624
R+L+ +K DYLKKMRNPK++ +K +K I +C KA +CPRCG ING +KKA
Sbjct: 125 RLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKA 184
Query: 3623 KASLAVVEDFSKFAGARSEDYHRGAAATKDKAPAPVQTLNMLNAVSVLALFKRMPDEDCE 3444
A L ++ D SK + E + TK+ A +LN V+VL LFKRM D DCE
Sbjct: 185 VAVLGIIHDRSKVTESLQE-FASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCE 243
Query: 3443 LLNLHDRPEKMIVTNIPVPPLAIRPSVFVDYGKSTNEDSLTSILRNVINTNSLLREDIEG 3264
+L L +RPEK+I+TNI VPP+AIRPSV +D G +NE+ +T L+ +I TN+ L++++
Sbjct: 244 VLYLSERPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLKRIIQTNASLQQELVE 302
Query: 3263 GAPAFKCLECWLHLQTQVVEYVNSDAPGLQDSKH-----RGIIQRLKGKQGRFRCNLSGK 3099
AFK L W LQ +V +Y+NSD G+ S G +QRLKGKQGRFR NLSGK
Sbjct: 303 ANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGK 362
Query: 3098 RAEFTGRTVISPDPNLKITEVGIPILMARVLTYPERVSHHNIEKLRQCVRNGPFKYPGAN 2919
R E+TGRTVISPDPNLKITEV IPI MAR+LTYPERVS HNIEKLRQC++NGP KYPGA
Sbjct: 363 RVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGAR 422
Query: 2918 YVELPDGTRIFLKFAEKKNVASDLKYGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARI 2739
+ PDGT L + +A +LK G IV+RHLEDGD+VLFNRQPSLHRMSIM HRARI
Sbjct: 423 MIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARI 482
Query: 2738 MPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALTLMGVQNNLCTPKNGEILVA 2559
MPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEAL LMGVQNNLCTPKNGEILVA
Sbjct: 483 MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVA 542
Query: 2558 STQDFLTSSYLITRRDTFYDRATFSLICSYMGDGMDAIDLPTPSIIKPVELWTGKQVFSV 2379
STQDFLTSS+LITR+DTFYDRA FSL+C YMGDGMD +DLPTP+I+KPVELWTGKQ+FSV
Sbjct: 543 STQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSV 602
Query: 2378 LIRPNAGTRVYLNLTVKEKIFSKPVGVCP--------TMCPKDGFVYFRNSELISGQLGK 2223
LIRP+A RVY+NLTVKEK +S + TMCP DGFVYFRNSELISGQLGK
Sbjct: 603 LIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGK 662
Query: 2222 TTLGNGNKDGLFSVLLRDYNSHAAACCMNRLAKLSARWIGNHGFSIGIDDVQPGEHLTQQ 2043
TLGNGNKDGL+SVLLRDY +HA + CMNRLAKLSARWIGNHGFSIGIDDVQP + L+ +
Sbjct: 663 ATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDK 722
Query: 2042 KKQKIDDGYRECHKFISLYNEGKLNLQPGCDSAQTLELNITSVLNQIRGQAGDVCMNTLH 1863
K + I + Y C+ I YNEGKL L+PGCD+AQTLE IT +LN+IR AG CM +L
Sbjct: 723 KGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLP 782
Query: 1862 WRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFINRTLPHFPINSKTPAAKG 1683
WRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAPNGFI+R+LPHFP +K PAAKG
Sbjct: 783 WRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKG 842
Query: 1682 FVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLIKGLEDLSLYYDLTVRN 1503
FVANSFY+GL+ATEFFFHTMGGREGLVDTAVKTA+TGYMSRRLIK LEDLS+ YD +VRN
Sbjct: 843 FVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRN 902
Query: 1502 ASGGVVQFLYGDDGMDPAKMEGKDGLPLNLDQLFSKVMATCPSRGDEALSPSEILQIMDE 1323
A G +VQFLYGDDGMDPA MEGK G PLN D+L KV ATCP G LSP ++ +I+++
Sbjct: 903 AGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEK 962
Query: 1322 RFSKYDASSEGHSSAAFEKLISGFLQERVAALKKTRSTLKLDEDNVGKRDTSIMENVAAK 1143
+ + Y S S AF + F + + L K +K ED + I+E V K
Sbjct: 963 QLAAYGKES---CSEAFLNSLRKFFEGQQDKLDK---KIKFVEDIGWDDKSQILEEVTHK 1016
Query: 1142 VSGVSLKQLQVFLDICFSRYQLKKLEPXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMN 963
SG++ KQL+VF+ CFSRY +K++E GEPGTQMTLKTFHFAGVASMN
Sbjct: 1017 TSGITEKQLEVFIQTCFSRYHVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN 1076
Query: 962 VTLGVPRIKEIINGAKKISTPIITATLLSDHDDTVARIVKGSIEKTVLGEVAKAIKIVLK 783
+T GVPRIKEIINGAK+ISTPIITA L + ++ AR+VKG IEKT+LG+VAK+IKIV+
Sbjct: 1077 ITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMT 1136
Query: 782 SSQPYIAVTLDTDRIVSLQMRISSDSVKHSILNHPKIKLKPDRVHIMSASKLRIFSSEAD 603
S I + LD + I + I++D VK SI+ PKIKLK + ++ KL IF D
Sbjct: 1137 SRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIF-PPVD 1195
Query: 602 RSKLQYELHTLKAMLPKVIVKGIPTVERAVI------------NKQGGKYNLLVEGTNLL 459
+SK+ +EL++LK +LP VIVKGI TVER VI N + KY LLVEGT L
Sbjct: 1196 KSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQ 1255
Query: 458 AVMGSPGIDPCKTRSNHVIEVQETLGIEAARKCIINEIQYTMSSHGMSIDTRHMMLLADL 279
AVMG+ GID CKT+SNH+ EVQ+TLGIEAAR CII+EI TM +HGMSID RHMMLLADL
Sbjct: 1256 AVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADL 1315
Query: 278 MTYKGEVLGITRFGISKMKESVLMLASFEKTSEHLFNASFNGRDDEIEGVSECIIMGIPM 99
MT++GEVLGITRFGI KM +SVLMLASFEKT++HLFNAS NGRDD IEGVSECIIMGIPM
Sbjct: 1316 MTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPM 1375
Query: 98 KLGTGILKVQQRVEQLPELKY-APDPIL 18
LGTGILK++QR P LKY APDPI+
Sbjct: 1376 PLGTGILKIRQRDAVPPMLKYGAPDPIM 1403
>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 1394
Score = 1704 bits (4412), Expect = 0.0
Identities = 883/1397 (63%), Positives = 1063/1397 (76%), Gaps = 35/1397 (2%)
Frame = -2
Query: 4148 MSRREEKLRCTKEPYIEDVGPRRIKSIRFGMLSGDEIRKLAEVQVWTNRFYDASVKPVPH 3969
M +R + + TK+PYIEDVGPRRIKSI+F +SG +I K +E QV ++YDA+ K +
Sbjct: 1 MQQRAQDIIYTKQPYIEDVGPRRIKSIQFSTMSGSDILKASECQVHLGQYYDANKKAIVG 60
Query: 3968 GLLDPRMGAPNKSSSCSTCHGSHQDCPGHFGYLKLTLPVFNVGYFNSILNILKCICKSCA 3789
GLLD RMGAPNK +C TC GS DCPGHFGYL L LPV+NVGY ++IL+ILKCICKSC+
Sbjct: 61 GLLDTRMGAPNKHGTCQTCGGSFTDCPGHFGYLNLVLPVYNVGYLSTILDILKCICKSCS 120
Query: 3788 RILIADKDRIDYLKKMRNPKIDIAQKNAFVKKIRDRC------KAGRCPRCGSINGTMKK 3627
R+L+ +K R YLK+MRNP+ + +KN +K+I +C KA +C RCG +NG +KK
Sbjct: 121 RVLVDEKLRKSYLKRMRNPRTEPLKKNELMKEIVKKCSSMASSKAVKCLRCGYMNGMVKK 180
Query: 3626 AKASLAVVEDFSKFAGARSEDYHRGAAATKD-KAPAPVQTLNMLNAVSVLALFKRMPDED 3450
A + + ++ D SK E+ T++ +AP + T +LN V VL+LF+RM +ED
Sbjct: 181 AGSVVGIIHDRSKLIDGYLEECKSAIGHTREARAPIGLATY-ILNPVRVLSLFQRMVEED 239
Query: 3449 CELLNLHDRPEKMIVTNIPVPPLAIRPSVFVDYGKSTNEDSLTSILRNVINTNSLLR-ED 3273
CELL L RPEK+I+T I VPP++IRPSVF + G +NE+ +T L+ +I N+ LR E
Sbjct: 240 CELLYLQGRPEKLIITTIAVPPISIRPSVFTE-GSQSNENDITERLKQIIQFNAKLRLEL 298
Query: 3272 IEGGAPAFKCLECWLHLQTQVVEYVNSDAPGLQDSKH----RGIIQRLKGKQGRFRCNLS 3105
+EG K L W LQ V Y+NSD D + G +QRL GKQGRFR NL+
Sbjct: 299 LEGRRTGIKYLIGWDELQAVVTLYINSDVRIPLDMQVGRPLSGFVQRLTGKQGRFRQNLA 358
Query: 3104 GKRAEFTGRTVISPDPNLKITEVGIPILMARVLTYPERVSHHNIEKLRQCVRNGPFKYPG 2925
GKR EFTGRTVISPDPNLKITEV IPI MAR+LTYPERV+HHNIEKLRQCV NG +KYPG
Sbjct: 359 GKRVEFTGRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCVNNGSYKYPG 418
Query: 2924 ANYVELPDGTRIFLKFAEKKNVASDLKYGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRA 2745
A V PDG+ L +K +A +LK G IV RHLEDGD+VLFNRQPSLHRMSIM HRA
Sbjct: 419 ARMVTYPDGSSKMLTGNYRKRIAEELKSGCIVHRHLEDGDVVLFNRQPSLHRMSIMCHRA 478
Query: 2744 RIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALTLMGVQNNLCTPKNGEIL 2565
RIMPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEA LMGVQNNLCTPKNGEIL
Sbjct: 479 RIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAFLLMGVQNNLCTPKNGEIL 538
Query: 2564 VASTQDFLTSSYLITRRDTFYDRATFSLICSYMGDGMDAIDLPTPSIIKPVELWTGKQVF 2385
VASTQDFLTSS+LITR+DTFYDRA FSL+CSYM DGMD +DLPTPS++KP+ELWTGKQ+F
Sbjct: 539 VASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMNDGMDLVDLPTPSVLKPIELWTGKQLF 598
Query: 2384 SVLIRPNAGTRVYLNLTVKEKIFSKP----VGVCPTMCPKDGFVYFRNSELISGQLGKTT 2217
SVL+RP+A RVY+NL +KEK +S+P TMCP DG+VYFRNSELISGQLGK T
Sbjct: 599 SVLLRPHANVRVYVNLILKEKNYSRPNKEHKKERETMCPNDGYVYFRNSELISGQLGKAT 658
Query: 2216 LGNGNKDGLFSVLLRDYNSHAAACCMNRLAKLSARWIGNHGFSIGIDDVQPGEHLTQQKK 2037
LGNGNKDGL+S+LLRDYN++AAA CMNRLAKLSARWIGNHGFSIGIDDVQPG+ L +K
Sbjct: 659 LGNGNKDGLYSILLRDYNAYAAATCMNRLAKLSARWIGNHGFSIGIDDVQPGKKLIDEKG 718
Query: 2036 QKIDDGYRECHKFISLYNEGKLNLQPGCDSAQTLELNITSVLNQIRGQAGDVCMNTLHWR 1857
+ I +GYR C+K I+ YN G+L L+ GCD+ QTLE IT LN++R +AGDVCM LHWR
Sbjct: 719 KTISNGYRHCNKLIADYNGGRLALKSGCDATQTLETEITERLNKLREEAGDVCMKELHWR 778
Query: 1856 NSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFINRTLPHFPINSKTPAAKGFV 1677
NSPLIMSQCGSKGSPINISQMIACVGQQSVGG RAP+GFI+R+LPHFP SKTPAAKGFV
Sbjct: 779 NSPLIMSQCGSKGSPINISQMIACVGQQSVGGSRAPDGFIDRSLPHFPRKSKTPAAKGFV 838
Query: 1676 ANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLIKGLEDLSLYYDLTVRNAS 1497
ANSFY+GL+ATEFFFHTMGGREGLVDTAVKTA+TGYM+RRL KGLEDL + YD TV++A
Sbjct: 839 ANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMARRLSKGLEDLCVQYDNTVQDAG 898
Query: 1496 GGVVQFLYGDDGMDPAKMEGKDGLPLNLDQLFSKVMATCPSRGDEALSPSEILQIMDERF 1317
GG+VQFLYGDDG+DPA MEGK G+PLN D+LF KV ATC + DE LSPS+I I+
Sbjct: 899 GGIVQFLYGDDGLDPAIMEGKAGVPLNFDRLFMKVKATCGAEEDEYLSPSDISNIVQSLL 958
Query: 1316 SKYDASSEGHSSAAFEKLISGFL---QERVAALKKTRSTLKLDE-DNVGKRD--TSIMEN 1155
K++ + +G S +F K +S FL +R+ L K ++++ +N+ + T I +N
Sbjct: 959 LKHNGTLDGICSESFRKSLSSFLGDQAKRLECLMKLVDGVEVENFENIKNVEGLTGISKN 1018
Query: 1154 ---VAAKVSGVSLKQLQVFLDICFSRYQLKKLEPXXXXXXXXXXXXGEPGTQMTLKTFHF 984
+A KVSG++ KQL+VFL C RY K++EP GEPGTQMTLKTFHF
Sbjct: 1019 TEKIAQKVSGITEKQLEVFLKTCLDRYVWKRIEPGTAIGAIGAQSIGEPGTQMTLKTFHF 1078
Query: 983 AGVASMNVTLGVPRIKEIINGAKKISTPIITATLLSDHDDTVARIVKGSIEKTVLGEVAK 804
AGVASMN+T GVPRIKEIINGAK+ISTPIIT L + + ARI+KG I+KTVLG+VAK
Sbjct: 1079 AGVASMNITQGVPRIKEIINGAKRISTPIITVELEHNSNVNAARIIKGRIQKTVLGQVAK 1138
Query: 803 AIKIVLKSSQPYIAVTLDTDRIVSLQMRISSDSVKHSILNHPKIKLKPDRVHIMSASKLR 624
+IKIV+ S + VTLD I Q+ + ++ V+ IL PKIK K R++++ KL
Sbjct: 1139 SIKIVMTSRSASVKVTLDMKTIREAQLSLDANIVRELILETPKIKRKLQRINVLEDGKLE 1198
Query: 623 IFSSEADRSKLQYELHTLKAMLPKVIVKGIPTVERAVI---------NKQGG-KYNLLVE 474
+F DR+KL +ELH+LK MLP V+VKGI TVER VI N QGG KYN+ VE
Sbjct: 1199 VFPG-GDRNKLHFELHSLKNMLPAVVVKGIKTVERVVIAQKKLDDAENDQGGPKYNMFVE 1257
Query: 473 GTNLLAVMGSPGIDPCKTRSNHVIEVQETLGIEAARKCIINEIQYTMSSHGMSIDTRHMM 294
G L AVMG+ G+D KT+SNH+IEVQETLGIEAARKCII+EI+ TM SHGMSID RHMM
Sbjct: 1258 GMGLQAVMGTEGVDGRKTKSNHIIEVQETLGIEAARKCIIDEIKGTMESHGMSIDIRHMM 1317
Query: 293 LLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTSEHLFNASFNGRDDEIEGVSECII 114
LLAD+MT +G VLGITRFGI KM +SVLMLASFEKTS+HLFNAS G+DD+IEGVSECII
Sbjct: 1318 LLADVMTSRGVVLGITRFGIQKMDKSVLMLASFEKTSDHLFNASVKGKDDKIEGVSECII 1377
Query: 113 MGIPMKLGTGILKVQQR 63
MGIP+ +GTG+LK+QQR
Sbjct: 1378 MGIPVAIGTGVLKIQQR 1394
>ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Selaginella moellendorffii]
gi|300146624|gb|EFJ13293.1| hypothetical protein
SELMODRAFT_446351 [Selaginella moellendorffii]
Length = 1393
Score = 1702 bits (4408), Expect = 0.0
Identities = 869/1383 (62%), Positives = 1057/1383 (76%), Gaps = 17/1383 (1%)
Frame = -2
Query: 4118 TKEPYIEDVGPRRIKSIRFGMLSGDEIRKLAEVQVWTNRFYDASV-KPVPHGLLDPRMGA 3942
TK +++D GPR+IKS+RF +S +E+ K AEVQ++ + Y KP+P+G+LD R+G
Sbjct: 19 TKGLHLDDAGPRKIKSMRFSTMSSEEVTKTAEVQIFEHSLYQLPERKPLPYGVLDTRLGT 78
Query: 3941 PNKSSSCSTCHGSHQDCPGHFGYLKLTLPVFNVGYFNSILNILKCICK---SCARILIAD 3771
NK C+TC G DCPGHFGY+KL LPVF++GYF I+ IL+CICK S ++ +
Sbjct: 79 SNKKGQCTTCDGKLADCPGHFGYIKLELPVFHIGYFKDIIVILQCICKASFSLLEVVASQ 138
Query: 3770 KDRIDYLKKMRNPKIDIAQKNAFVKKIRDRCKAGR-CPRCGSINGTMKKAKASLAVVED- 3597
++R + ++M+NP+ +I +K ++KKI D CK R CPRCG ING +KK ++L ++ D
Sbjct: 139 EERQKWQRRMQNPRSEILRKKEYLKKINDLCKKVRACPRCGDINGVVKKLGSTLKIIHDK 198
Query: 3596 FSKFAGARSEDYHRGAAATKDKAPAPVQTLNM---LNAVSVLALFKRMPDEDCELLNLHD 3426
++K A E H+ A K N+ L + VL LF+++ EDC +L+L D
Sbjct: 199 YAKNYEAFEEMAHKFDDAVKVNKEMKGYMKNIQEDLTPLKVLGLFEKIIGEDCVVLDLVD 258
Query: 3425 RPEKMIVTNIPVPPLAIRPSVFVDYGKSTNEDSLTSILRNVINTNSLLREDIEGGAPAFK 3246
RPE++IV ++PVPP+AIRPSV +D +NED +T L ++I N+ +R +E G K
Sbjct: 259 RPEQLIVQHMPVPPVAIRPSVEMDAAVGSNEDDVTIKLMHIIEQNNQIRACLESGLSIAK 318
Query: 3245 CLECWLHLQTQVVEYVNSDAPGLQDSKH-----RGIIQRLKGKQGRFRCNLSGKRAEFTG 3081
C+E W LQ QV Y+NS+ PGL + RG +QRLKGKQGRFR NLSGKR +FTG
Sbjct: 319 CMEIWDFLQIQVAMYINSELPGLPPNMQTGKPLRGFVQRLKGKQGRFRGNLSGKRVDFTG 378
Query: 3080 RTVISPDPNLKITEVGIPILMARVLTYPERVSHHNIEKLRQCVRNGPFKYPGANYVELPD 2901
RTVISPDPNLK++EV +PILMA+ LTYPE+VS HNIEKLRQ V NG K+PGAN+V PD
Sbjct: 379 RTVISPDPNLKVSEVAVPILMAQTLTYPEKVSAHNIEKLRQRVINGKEKHPGANFVVFPD 438
Query: 2900 GTRIFLKFAEKKNVASDLKYGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 2721
G + FLKF ++K +AS+LKYG +VERHLEDGDIVLFNRQPSLHRMSIM HRAR+MPWRTL
Sbjct: 439 GVKRFLKFGDRKRIASELKYGDVVERHLEDGDIVLFNRQPSLHRMSIMCHRARVMPWRTL 498
Query: 2720 RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALTLMGVQNNLCTPKNGEILVASTQDFL 2541
RFNESVCNPYNADFDGDEMN+HVPQTEEARTEALTLMGVQNNLCTPKNGEILVASTQDFL
Sbjct: 499 RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALTLMGVQNNLCTPKNGEILVASTQDFL 558
Query: 2540 TSSYLITRRDTFYDRATFSLICSYMGDGMDAIDLPTPSIIKPVELWTGKQVFSVLIRPNA 2361
TSS+LITRRDTFYDR F+L+CSYMGD ++ IDLPTP+I+KPVELWTGKQ+F VLIRP+A
Sbjct: 559 TSSFLITRRDTFYDRGQFALMCSYMGDAVEHIDLPTPAILKPVELWTGKQLFGVLIRPSA 618
Query: 2360 GTRVYLNLTVKEKIFSKPVGVCPTMCPKDGFVYFRNSELISGQLGKTTLGNGNKDGLFSV 2181
+V+LN V EK K TMCPKDG+V+F+NSELI GQLGK TLGNG+KDGLF+V
Sbjct: 619 RIKVFLNFVVCEKNHKKGT---ETMCPKDGYVFFKNSELICGQLGKGTLGNGSKDGLFTV 675
Query: 2180 LLRDYNSHAAACCMNRLAKLSARWIGNHGFSIGIDDVQPGEHLTQQKKQKIDDGYRECHK 2001
LLRDY AAA CMNRLAKLSARWIGNHGFSIGIDDVQPG LT +K+++I +GYR C K
Sbjct: 676 LLRDYGEQAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGSRLTVEKEKRIAEGYRACDK 735
Query: 2000 FISLYNEGKLNLQPGCDSAQTLELNITSVLNQIRGQAGDVCMNTLHWRNSPLIMSQCGSK 1821
ISL+N+G+L LQPGCD+AQTLE IT LN+IR AG VC+N LHWRNSPLIMSQCGSK
Sbjct: 736 HISLFNKGQLTLQPGCDAAQTLESEITGELNKIREAAGQVCVNELHWRNSPLIMSQCGSK 795
Query: 1820 GSPINISQMIACVGQQSVGGRRAPNGFINRTLPHFPINSKTPAAKGFVANSFYTGLTATE 1641
GS INISQMIACVGQQSV G RAPNGFI R+LPHFP N KTP AKGFVANSFY+GLTATE
Sbjct: 796 GSVINISQMIACVGQQSVSGHRAPNGFIERSLPHFPRNDKTPQAKGFVANSFYSGLTATE 855
Query: 1640 FFFHTMGGREGLVDTAVKTAETGYMSRRLIKGLEDLSLYYDLTVRNASGGVVQFLYGDDG 1461
F FHTMGGREGLVDTAVKTAETGYMSRRL+K LEDLS YD TVRN+SG +VQ +YGDD
Sbjct: 856 FIFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSCQYDGTVRNSSGVIVQLIYGDDS 915
Query: 1460 MDPAKMEGKDGLPLNLDQLFSKVMATCPSRGDEALSPSEILQIMDERFSKYDASSEGHSS 1281
MDP MEG++G PLNLD++ K ATCP AL PSE+ +I++ +FS+ D S S
Sbjct: 916 MDPVSMEGQNGTPLNLDRVLMKAKATCPRGTTPALPPSELWKIVESKFSQ-DGS---ECS 971
Query: 1280 AAFEKLISGFLQERVAALKKTRSTLKLDEDNVGKRDTSIMENVAAKVSGVSLKQLQVFLD 1101
AF + FL++ + TR L L D+ G D ENVAA VSG++ +QL+VFL+
Sbjct: 972 TAFLDSLRKFLRKEFDTISSTRKRLSLPLDDFGNVDD---ENVAANVSGLTSRQLEVFLN 1028
Query: 1100 ICFSRYQLKKLEPXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIING 921
C RY KKL+P GEPGTQMTLKTFHFAGVASMN+TLGVPRIKEIIN
Sbjct: 1029 TCIGRYHRKKLDPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINA 1088
Query: 920 AKKISTPIITATLLSDHDDTVARIVKGSIEKTVLGEVAKAIKIVLKSSQPYIAVTLDTDR 741
+KKISTPIITA L+S++D ARIVKG IEKT LG+VAK+IKIVL+ Q ++++ LD DR
Sbjct: 1089 SKKISTPIITAKLVSENDVKAARIVKGRIEKTALGDVAKSIKIVLRPGQAFVSIKLDMDR 1148
Query: 740 IVSLQMRISSDSVKHSILNHPKI---KLKPDRVHIMSASKLRIFSSEADRSKLQYELHTL 570
I SLQ+ I +++V ++L PKI KLK V + + + + E+DR K+ + LH+L
Sbjct: 1149 IYSLQLDIRAETVAEAVLKFPKIKSMKLKEQHVKVNDDRSISLTTPESDRKKMLFALHSL 1208
Query: 569 KAMLPKVIVKGIPTVERAVINKQGGKYNLLVEGTNLLAVMGSPGIDPCKTRSNHVIEVQE 390
+ MLPKVIVKGIPTVERAVIN++ GKYNLLVEGTNL AVMG+ G+D +T SNH+ E E
Sbjct: 1209 QNMLPKVIVKGIPTVERAVINQEKGKYNLLVEGTNLKAVMGTEGVDGRETTSNHIFETVE 1268
Query: 389 TLGIEAARKCIINEIQYTMSSHGMSIDTRHMMLLADLMTYKGEVLGITRFGISKMKESVL 210
LGIEAAR II EIQYTM SHGMSID RHMMLLAD+MTY+GE+LGITRFG++KMK+SVL
Sbjct: 1269 VLGIEAARNGIIKEIQYTMGSHGMSIDQRHMMLLADVMTYRGEILGITRFGMAKMKDSVL 1328
Query: 209 MLASFEKTSEHLFNASFNGRDDEIEGVSECIIMGIPMKLGTGILKVQQRVEQLPELKYAP 30
MLASFEKT++HLF AS +GR D+IEGVSECIIMGIPM LGTG+ KV+Q+V ++P+L Y P
Sbjct: 1329 MLASFEKTTDHLFAASVHGRTDQIEGVSECIIMGIPMPLGTGLFKVRQKVGRIPKLIYGP 1388
Query: 29 DPI 21
P+
Sbjct: 1389 PPL 1391
>ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi|162691719|gb|EDQ78080.1|
predicted protein [Physcomitrella patens]
Length = 1397
Score = 1689 bits (4373), Expect = 0.0
Identities = 864/1386 (62%), Positives = 1062/1386 (76%), Gaps = 19/1386 (1%)
Frame = -2
Query: 4118 TKEPYIEDVGPRRIKSIRFGMLSGDEIRKLAEVQVWTNRFYDASVK-PVPHGLLDPRMGA 3942
+K P+IEDVGPR+I+SIRFG +S +I K +E+ V+ + Y + P P+ ++D R+G
Sbjct: 15 SKRPFIEDVGPRKIESIRFGTMSKQDIVKASELHVYESMLYTMPERNPAPYSVVDTRLGT 74
Query: 3941 PNKSSSCSTCHGSHQDCPGHFGYLKLTLPVFNVGYFNSILNILKCICKSCARILIADKDR 3762
NK CSTC G DCPGHFG+ KL +PVF++GY +IL IL+CICKSCARIL+ +++
Sbjct: 75 TNKKGECSTCFGKLADCPGHFGHTKLEMPVFHIGYLKNILQILQCICKSCARILMPEEEC 134
Query: 3761 IDYLKKMRNPKIDIAQKNAFVKKIRDRCKAGR-CPRCGSINGTMKK-AKASLAVVED-FS 3591
L+KMRNP+I++ Q+ A +KK+ DRCK R C RCG NG +KK A+ + ++ D +
Sbjct: 135 KLILRKMRNPRIEVLQRRAVLKKVIDRCKRVRVCTRCGDYNGVVKKMAQPPVKLIHDKYG 194
Query: 3590 KFAGARSEDYHRGAAATKDKAPAPVQTLNM----LNAVSVLALFKRMPDEDCELLNLHDR 3423
K + E A K K P +N L+ + VL LF+ M ++DCE+L+L +R
Sbjct: 195 KALDLKEEMIVSLEDAMKCK-PELKNCINRVYDNLDPMRVLQLFESMIEQDCEVLDLAER 253
Query: 3422 PEKMIVTNIPVPPLAIRPSVFVDYGKSTNEDSLTSILRNVINTNSLLREDIEGGAPAFKC 3243
PEK+IVT++ VPP+AIRPSV ++ +NED +T L ++N N+ LR +E G A K
Sbjct: 254 PEKLIVTHLIVPPVAIRPSVEMESAAGSNEDDITVRLLGILNCNNSLRTCVEQGLAAEKT 313
Query: 3242 LECWLHLQTQVVEYVNSDAP------GLQDSKHRGIIQRLKGKQGRFRCNLSGKRAEFTG 3081
+E W LQ+QV + +NS+ P + RG +QRLKGKQGRFR NLSGKR +FTG
Sbjct: 314 METWELLQSQVSQLINSETPVPRSEQPTSGKQPRGFVQRLKGKQGRFRGNLSGKRVDFTG 373
Query: 3080 RTVISPDPNLKITEVGIPILMARVLTYPERVSHHNIEKLRQCVRNGPFKYPGANYVELPD 2901
RTVISPDPNLKITEV +P+LMA++LTYPE+VS +NI+KLR + NG K+PGAN++ PD
Sbjct: 374 RTVISPDPNLKITEVAVPLLMAQLLTYPEKVSRYNIDKLRGRIINGMTKHPGANFIIFPD 433
Query: 2900 GTRIFLKFAEKKNVASDLKYGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 2721
G +++LKF +++ A++LKYG IVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTL
Sbjct: 434 GNKLYLKFGDRRRYAAELKYGDIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 493
Query: 2720 RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALTLMGVQNNLCTPKNGEILVASTQDFL 2541
RFNESVCNPYNADFDGDEMNLHVPQTEEARTEAL LMGV NNLCTPKNGEILVASTQDFL
Sbjct: 494 RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVANNLCTPKNGEILVASTQDFL 553
Query: 2540 TSSYLITRRDTFYDRATFSLICSYMGDGMDAIDLPTPSIIKPVELWTGKQVFSVLIRPNA 2361
TSSYL TR+DTFYDRATF+ C YMGD + IDLPTPSIIKP+ELWTGKQ+FSVL+RPNA
Sbjct: 554 TSSYLFTRKDTFYDRATFTQACVYMGDAAENIDLPTPSIIKPMELWTGKQLFSVLVRPNA 613
Query: 2360 GTRVYLNLTVKEKIFSKPVGVCPTMCPKDGFVYFRNSELISGQLGKTTLGNGNKDGLFSV 2181
TRV++NL EK + K +MCP DG+VYFRNSELI GQLGK TLGNGNKDGLF+V
Sbjct: 614 KTRVFVNLVSYEKNYDKKANK-GSMCPTDGYVYFRNSELICGQLGKATLGNGNKDGLFTV 672
Query: 2180 LLRDYNSHAAACCMNRLAKLSARWIGNHGFSIGIDDVQPGEHLTQQKKQKIDDGYRECHK 2001
LLRDY + AAA CMNRLAKLSARWIGNHGFSIGIDDV P + L ++K+++I GY C +
Sbjct: 673 LLRDYGNEAAAVCMNRLAKLSARWIGNHGFSIGIDDVAPSDRLNREKEKQITKGYNACDQ 732
Query: 2000 FISLYNEGKLNLQPGCDSAQTLELNITSVLNQIRGQAGDVCMNTLHWRNSPLIMSQCGSK 1821
I LY +GKL LQPGC++AQTLE +T LN+IR AG+VC + LHWRNSPLIMS+CGSK
Sbjct: 733 HIQLYKKGKLELQPGCNAAQTLESAVTGELNKIREAAGNVCKDELHWRNSPLIMSECGSK 792
Query: 1820 GSPINISQMIACVGQQSVGGRRAPNGFINRTLPHFPINSKTPAAKGFVANSFYTGLTATE 1641
GS INISQM+ACVGQQSVGG+RAPNGFI+RTLPHFP + +TP KGFVANSFY+GL+ATE
Sbjct: 793 GSFINISQMVACVGQQSVGGKRAPNGFIDRTLPHFPRHDRTPQGKGFVANSFYSGLSATE 852
Query: 1640 FFFHTMGGREGLVDTAVKTAETGYMSRRLIKGLEDLSLYYDLTVRNASGGVVQFLYGDDG 1461
FFFHTMGGREGLVDTAVKTAETGYMSRRL+K LEDLS YD TVRN+SGG+VQ LYGDDG
Sbjct: 853 FFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSAQYDGTVRNSSGGIVQLLYGDDG 912
Query: 1460 MDPAKMEGKDGLPLNLDQLFSKVMATCPSRGDEALSPSEILQIMDERFSKYDASSEGHSS 1281
MDP MEGKDG P NLD++ K ATCPS G L P+EI ++ +ER +K D +SE +
Sbjct: 913 MDPVYMEGKDGAPFNLDRMLMKTKATCPSYGQLGLPPTEIEKLFNERLTKPDMTSE--TV 970
Query: 1280 AAFEKLISGFLQERVAALKKTRSTLKLDEDNVGKRDTSIMENVAAKVSGVSLKQ-----L 1116
AF+ + F+ + TR+ L L D G D +++E+ A +SG++ +Q L
Sbjct: 971 GAFKTSLKKFMDSCIKDNISTRTKLGLPLDCNGGPDQTLLESTATYISGLTSRQLEICLL 1030
Query: 1115 QVFLDICFSRYQLKKLEPXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIK 936
QVFLD C RY +K++EP GEPGTQMTLKTFHFAGVASMN+TLGVPRIK
Sbjct: 1031 QVFLDTCIKRYHMKRVEPGAAVGAVGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIK 1090
Query: 935 EIINGAKKISTPIITATLLSDHDDTVARIVKGSIEKTVLGEVAKAIKIVLKSSQPYIAVT 756
EIIN +K ISTPIITA L+S +D+ ARIVKG IEKT LGEVAK+IK VL++SQ I+V
Sbjct: 1091 EIINASKNISTPIITAVLVSGNDEKAARIVKGRIEKTTLGEVAKSIKTVLRASQAIISVK 1150
Query: 755 LDTDRIVSLQMRISSDSVKHSILNHPKIKLKPDRVHIMSASKLRIFSSEADRSKLQYELH 576
LD RI +LQ+ I+SD+V +I+ PKIKLK + I+ KL + + D+ KL + LH
Sbjct: 1151 LDMKRIDALQLDINSDTVALAIVQTPKIKLKHVNIRIVDRDKLIVIPPDQDKGKLYFYLH 1210
Query: 575 TLKAMLPKVIVKGIPTVERAVINKQGGKYNLLVEGTNLLAVMGSPGIDPCKTRSNHVIEV 396
+L MLPKVIVKGIP+VERAVINK+ G YNLLVEGTNL AVMG G++ T+SNHVIE
Sbjct: 1211 SLCNMLPKVIVKGIPSVERAVINKEKGVYNLLVEGTNLKAVMGISGVNGKLTKSNHVIEA 1270
Query: 395 QETLGIEAARKCIINEIQYTMSSHGMSIDTRHMMLLADLMTYKGEVLGITRFGISKMKES 216
++TLGIEAAR II+EIQYTM SHGM+ID RHMMLLAD+MTYKGEVLGITRFGI+KMK+S
Sbjct: 1271 EQTLGIEAARNVIIDEIQYTMGSHGMTIDARHMMLLADVMTYKGEVLGITRFGIAKMKDS 1330
Query: 215 VLMLASFEKTSEHLFNASFNGRDDEIEGVSECIIMGIPMKLGTGILKVQQRVEQLPELKY 36
VLMLASFEKT++HLF+A+ +GR D+IEGVSECIIMGIPM +GTG+ K++Q+VE+LP+L Y
Sbjct: 1331 VLMLASFEKTTDHLFDAAIHGRVDKIEGVSECIIMGIPMPIGTGLFKIRQKVEKLPKLSY 1390
Query: 35 APDPIL 18
P P+L
Sbjct: 1391 GPTPLL 1396
>ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
communis] gi|223528524|gb|EEF30548.1| DNA-directed RNA
polymerase III largest subunit, putative [Ricinus
communis]
Length = 1383
Score = 1683 bits (4358), Expect = 0.0
Identities = 883/1388 (63%), Positives = 1054/1388 (75%), Gaps = 41/1388 (2%)
Frame = -2
Query: 4058 MLSGDEIRKLAEVQVWTNRFYDASVKPVPHGLLDPRMG-APNKSSSCSTCHGSHQDCPGH 3882
M+SG EI K AE QV +YD++ KP+ GLLDPR+G A +SS+C TC +CPGH
Sbjct: 1 MMSGAEILKAAECQVHLGSYYDSTRKPIQAGLLDPRLGPATKQSSACETCGADFHECPGH 60
Query: 3881 FGYLKLTLPVFNVGYFNSILNILKCICKSCARILIADKDRIDYLKKMRNPKIDIAQKNAF 3702
FGYL L LPVFNVGY ++IL+ILKCICKSC+RIL +K LKKMRNP+I+ +K+
Sbjct: 61 FGYLNLVLPVFNVGYMSNILDILKCICKSCSRILYDEKLCKADLKKMRNPRIEHLRKSEL 120
Query: 3701 VKKIRDRC------KAGRCPRCGSINGTMKKAKASLAVVEDFSKFAGARSEDYHRGAAAT 3540
VKKI +C KA +C RCG +NG +KKA + L+++ D +K E+ A T
Sbjct: 121 VKKIVKKCSSMTSNKAVKCTRCGDMNGMVKKAGSVLSIIHDRAKLVDGYLEECRSAIAHT 180
Query: 3539 KD-KAPAPVQTLNMLNAVSVLALFKRMPDEDCELLNLHDRPEKMIVTNIPVPPLAIRPSV 3363
K+ +AP + T +L V VL+LFKR+P+EDCE+L L+DRPEK+I+TNI VPP++IRPSV
Sbjct: 181 KESRAPISLATY-ILTPVKVLSLFKRIPEEDCEVLGLYDRPEKLIITNIAVPPISIRPSV 239
Query: 3362 FVDYGKSTNEDSLTSILRNVINTNSLLR-EDIEGGAPAFKCLECWLHLQTQVVEYVNSDA 3186
F D G +NE+ +T L+ +I N+ LR E +EG K L+ W LQ V Y+NSD
Sbjct: 240 FTD-GLQSNENDITERLKQIIQANASLRMELLEGRMSVNKYLDSWDGLQAAVALYMNSDV 298
Query: 3185 P---GLQDSKH-RGIIQRLKGKQGRFRCNLSGKRAEFTGRTVISPDPNLKITEVGIPILM 3018
++ K G +QRLKGKQGRFR NLSGKR EFTGRTVISPDPNLKITEV IPI M
Sbjct: 299 RVPNNVEVGKPLSGFVQRLKGKQGRFRGNLSGKRVEFTGRTVISPDPNLKITEVAIPIHM 358
Query: 3017 ARVLTYPERVSHHNIEKLRQCVRNGPFKYPGANYVELPDGTRIFLKFAEKKNVASDLKYG 2838
AR+L+YPERVSHHNIEKLRQ V NGP KYPGA+ V PDG+ L + +K +A +L +G
Sbjct: 359 ARILSYPERVSHHNIEKLRQLVSNGPQKYPGASTVRYPDGSSKRLIGSYRKTIAEELTFG 418
Query: 2837 YIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPYNADFDGDEMNL 2658
IV+RHLEDGD+VLFNRQPSLHRMSIM HRARIMPWRTLRFNESVCNPYNADFDGDEMN+
Sbjct: 419 CIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNM 478
Query: 2657 HVPQTEEARTEALTLMGV-QNNLCTPKNGEILVASTQDFLTSSYLITRRDTFYDRATFSL 2481
HVPQTEEARTEAL LMGV QNNLCTPKNGEILVASTQDFLTSS+LITRRDTFYDRA FSL
Sbjct: 479 HVPQTEEARTEALLLMGVSQNNLCTPKNGEILVASTQDFLTSSFLITRRDTFYDRAAFSL 538
Query: 2480 ICSYMGDGMDAIDLPTPSIIKPVELWTGKQVFSVLIRPNAGTRVYLNLTVKEKIFSKPVG 2301
+CSYM DGMD IDLPTP+I+KP+ELWTGKQ+FSVL+RPNA RVY+NL V+EKI+SKP
Sbjct: 539 MCSYMNDGMDLIDLPTPAILKPIELWTGKQLFSVLLRPNANVRVYVNLIVREKIYSKPKK 598
Query: 2300 ----VCPTMCPKDGFVYFRNSELISGQLGKTTLGNGNKDGLFSVLLRDYNSHAAACCMNR 2133
TMCP DGFVY RNSELISGQLGK TLGNGNKDGL+S+LLRDYN HAAA CMNR
Sbjct: 599 GDKREKETMCPNDGFVYIRNSELISGQLGKATLGNGNKDGLYSILLRDYNPHAAATCMNR 658
Query: 2132 LAKLS--ARWIGNHGFSIGIDDVQPGEHLTQQKKQKIDDGYRECHKFISLYNEGKLNLQP 1959
LAKL ARWIGNHGFSIGIDDVQPG+ L K + I +GY++C K I YNEGKL L+P
Sbjct: 659 LAKLRQVARWIGNHGFSIGIDDVQPGKKLIDGKGKTISNGYQQCDKLIEQYNEGKLLLKP 718
Query: 1958 GCDSAQTLELNITSVLNQIRGQAGDVCMNTLHWRNSPLIMSQCGSKGSPINISQMIACVG 1779
GCD+ QTLE IT LN++R +AGDVCM LHWRNSPLIMSQCGSKGS INISQM+ACVG
Sbjct: 719 GCDATQTLESEITEKLNKLREEAGDVCMKELHWRNSPLIMSQCGSKGSVINISQMVACVG 778
Query: 1778 QQSVGGRRAPNGFINRTLPHFPINSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVD 1599
QQSVGGRRAP+GFI+R+LPHFP SKTPAAKGFVANSFY+GL ATEFFFHTM GREGLVD
Sbjct: 779 QQSVGGRRAPDGFIDRSLPHFPRKSKTPAAKGFVANSFYSGLMATEFFFHTMAGREGLVD 838
Query: 1598 TAVKTAETGYMSRRLIKGLEDLSLYYDLTVRNASGGVVQFLYGDDGMDPAKMEGKDGLPL 1419
TAVKTA+TGYMSRRLIKGLEDLS+ YD TVRNASG +VQFLYGDDG+DPA MEGK G+PL
Sbjct: 839 TAVKTADTGYMSRRLIKGLEDLSIQYDNTVRNASGCIVQFLYGDDGLDPASMEGKGGVPL 898
Query: 1418 NLDQLFSKVMATCPSRGDEALSPSEILQIMDERFSKYDASSEGHSSAAFEKLISGFLQER 1239
NLD+LFSKV ATCP R ++ LSP +I +++ K+D + G S AF+K ++ FL
Sbjct: 899 NLDRLFSKVKATCPVREEDYLSPLDISDVVENLLLKHDMALGGICSEAFKKSLTSFLGSH 958
Query: 1238 VAALKKTRSTLKLDE-------DNVG----KRDTSIMENVAAKVSGVSLKQLQVFLDICF 1092
K+ S +KL + +N+ + ++ I+E +A K+ GVS +Q++VF+ C
Sbjct: 959 A---KRLESMMKLADGVEDPTSENIQTGGIRGNSKIIERLAHKIFGVSERQIEVFVKTCI 1015
Query: 1091 SRYQLKKLEPXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKK 912
+RY K++EP GEPGTQMTLKTFHFAGVASMN+T GVPRIKEIINGAKK
Sbjct: 1016 NRYLWKRVEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKK 1075
Query: 911 ISTPIITATLLSDHDDTVARIVKGSIEKTVLGEVAKAIKIVLKSSQPYIAVTLDTDRIVS 732
ISTPIITA L + + T ARI KG I+KTVLG+VAK+IKIV+ S + +TLD I +
Sbjct: 1076 ISTPIITAELEQNTNVTAARIAKGRIQKTVLGQVAKSIKIVMTSRSASVVITLDMKTIQN 1135
Query: 731 LQMRISSDSVKHSILNHPKIKLKPDRVHIMSASKLRIFSSEADRSKLQYELHTLKAMLPK 552
Q+ + ++ VK +IL P+IKLKP + ++ KL + DR ++ +ELH LK +LP
Sbjct: 1136 AQLSLDANIVKEAILRTPRIKLKPQHIKVLDTRKLEVIPL-GDRERVHFELHNLKNLLPS 1194
Query: 551 VIVKGIPTVERAVI--NKQGGK--------YNLLVEGTNLLAVMGSPGIDPCKTRSNHVI 402
+IV+GI TVERAVI K GK YN+LVEG L VMG+ G+D CKT SNHV+
Sbjct: 1195 IIVQGIKTVERAVIAQKKHDGKANDQELPTYNMLVEGMGLDLVMGTEGVDGCKTTSNHVM 1254
Query: 401 EVQETLGIEAARKCIINEIQYTMSSHGMSIDTRHMMLLADLMTYKGEVLGITRFGISKMK 222
EVQ+ LGIEAARKCII+EI TM HGMSID RHMMLL DLMT+KGEVLGITRFGI KM
Sbjct: 1255 EVQKFLGIEAARKCIIDEINQTMEHHGMSIDIRHMMLLGDLMTFKGEVLGITRFGIQKMD 1314
Query: 221 ESVLMLASFEKTSEHLFNASFNGRDDEIEGVSECIIMGIPMKLGTGILKVQQRVEQLPEL 42
+SVLMLASFEKT++HL++A+ GRDD+IEGVSECIIMGIPM++GTGILKVQQRV+ P L
Sbjct: 1315 KSVLMLASFEKTADHLYHAAVFGRDDKIEGVSECIIMGIPMQIGTGILKVQQRVDPPPVL 1374
Query: 41 KYAPDPIL 18
Y D I+
Sbjct: 1375 NYGSDSII 1382
>gb|ESW04135.1| hypothetical protein PHAVU_011G070100g [Phaseolus vulgaris]
Length = 1392
Score = 1677 bits (4342), Expect = 0.0
Identities = 855/1393 (61%), Positives = 1049/1393 (75%), Gaps = 19/1393 (1%)
Frame = -2
Query: 4139 REEKLRCTKEPYIEDVGPRRIKSIRFGMLSGDEIRKLAEVQVWTNRFYDASVKPVPHGLL 3960
R E + TKEP++ED GPR+IK+++F MLS EI KL EVQVW +YD+ KP+ GLL
Sbjct: 5 RTEGITFTKEPFMEDAGPRKIKNMKFSMLSDSEISKLGEVQVWKGSYYDSFKKPIHGGLL 64
Query: 3959 DPRMGAPNKSSSCSTCHGSHQDCPGHFGYLKLTLPVFNVGYFNSILNILKCICKSCARIL 3780
DPRMG NKS C+TCHG+ DCPGH+GYL L LPVFNVGY SI+ ILKCICK CARIL
Sbjct: 65 DPRMGPANKSLGCATCHGNFHDCPGHYGYLNLALPVFNVGYLGSIVEILKCICKGCARIL 124
Query: 3779 IADKDRIDYLKKMRNPKIDIAQKNAFVKK--IRDRCKAGRCPRCGSINGTMKKAKASLAV 3606
+ + R +LKKMR+ K K FVK I+D K CPRCG ING++KK ASL +
Sbjct: 125 LDEDTRKKHLKKMRSSKKSELDKMDFVKVRIIKDCSKVVNCPRCGYINGSVKKLPASLII 184
Query: 3605 VEDFSKFAGARSEDYHRGAAATKDKAPAPVQTLNMLNAVSVLALFKRMPDEDCELLNLHD 3426
+ D SK E+ + KD + +LN VL+LF++M DEDCELL + +
Sbjct: 185 MHDCSKCKNNIVEELESTLSRIKDSKATANVSNRILNPFQVLSLFRKMLDEDCELLYVAE 244
Query: 3425 RPEKMIVTNIPVPPLAIRPSVFVDYGKSTNEDSLTSILRNVINTNSLLREDIEGGAPAFK 3246
RPEK+I+TNI VPP+AIRPSV +D S NE+ +T L+N+I N++LR++++ + + K
Sbjct: 245 RPEKLIITNIVVPPIAIRPSVVMDESLS-NENDITERLKNIIQANAVLRQELQESSVSSK 303
Query: 3245 CLECWLHLQTQVVEYVNSDAPGL----QDSKH-RGIIQRLKGKQGRFRCNLSGKRAEFTG 3081
L+ W LQ +V +++NS+ G+ Q +K G +QRLKGK GRFR NLSGKR E+TG
Sbjct: 304 FLDGWEILQNEVAQFINSEVRGIPFYMQSTKQLAGFVQRLKGKHGRFRGNLSGKRVEYTG 363
Query: 3080 RTVISPDPNLKITEVGIPILMARVLTYPERVSHHNIEKLRQCVRNGPFKYPGANYVELPD 2901
RTVISPDPNLKI+EV IPILMA +LTYPERV+HHNIEKLRQCVRNGP KYPGA +
Sbjct: 364 RTVISPDPNLKISEVAIPILMASILTYPERVTHHNIEKLRQCVRNGPDKYPGARMLRRDG 423
Query: 2900 GTRIFLKFAEKKNVASDLKYGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 2721
G LK +K A +L+ G IV+RHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTL
Sbjct: 424 GHSWSLKVLCRKRAADELRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 483
Query: 2720 RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALTLMGVQNNLCTPKNGEILVASTQDFL 2541
RFNESVCNPYNADFDGDEMNLHVPQTEEARTEA+ LMGVQNNLCTPKNGEILVASTQDFL
Sbjct: 484 RFNESVCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFL 543
Query: 2540 TSSYLITRRDTFYDRATFSLICSYMGDGMDAIDLPTPSIIKPVELWTGKQVFSVLIRPNA 2361
TSS+L+TR+DTFYDR+ F+ IC+++GDG+D IDLPTP+I+KPVELW+GKQ+FS+L+RP+A
Sbjct: 544 TSSFLVTRKDTFYDRSAFTNICTFIGDGLDLIDLPTPAIVKPVELWSGKQLFSLLLRPHA 603
Query: 2360 GTRVYLNLTVKEKIFSK---PVGVCPTMCPKDGFVYFRNSELISGQLGKTTLGNGNKDGL 2190
+VY+NLTVKEK ++K T+CP DGFVYFRN+ELISGQ+GK TLGNGNKDGL
Sbjct: 604 NFKVYVNLTVKEKTYTKLDDKKRELKTLCPNDGFVYFRNTELISGQIGKVTLGNGNKDGL 663
Query: 2189 FSVLLRDYNSHAAACCMNRLAKLSARWIGNHGFSIGIDDVQPGEHLTQQKKQKIDDGYRE 2010
FSVLLRDY +HAAA CMNRLAKLSARWIGNHGFSIGIDDVQP E L ++K + + +GY++
Sbjct: 664 FSVLLRDYKAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKEILIKKKDETLSEGYKK 723
Query: 2009 CHKFISLYNEGKLNLQPGCDSAQTLELNITSVLNQIRGQAGDVCMNTLHWRNSPLIMSQC 1830
C I +N+GKL L GCD+ QTLE IT VLN +R AG VCM TLHWRNSPLIMSQC
Sbjct: 724 CDNHIQAFNKGKLELLAGCDAPQTLETQITGVLNGLRDMAGKVCMQTLHWRNSPLIMSQC 783
Query: 1829 GSKGSPINISQMIACVGQQSVGGRRAPNGFINRTLPHFPINSKTPAAKGFVANSFYTGLT 1650
GSKGSPINISQM+ACVGQQSVGGRRAPNGF++R+LPHFP+N+KTPAAKGFVANSFY+GL+
Sbjct: 784 GSKGSPINISQMVACVGQQSVGGRRAPNGFLDRSLPHFPLNAKTPAAKGFVANSFYSGLS 843
Query: 1649 ATEFFFHTMGGREGLVDTAVKTAETGYMSRRLIKGLEDLSLYYDLTVRNASGGVVQFLYG 1470
ATEFFFHTMGGREGLVDTAVKTA+TGYMSR+L+K +EDL L+YD TVRNA G +VQF YG
Sbjct: 844 ATEFFFHTMGGREGLVDTAVKTADTGYMSRQLMKSMEDLFLHYDYTVRNAGGSIVQFCYG 903
Query: 1469 DDGMDPAKMEGKDGLPLNLDQLFSKVMATCPSR-GDEALSPSEILQIMDERFSKYDASSE 1293
DDGMDP MEGK+G PLN ++LF K A CP++ DE LS S++ +++ E+ S++ S E
Sbjct: 904 DDGMDPGGMEGKNGKPLNFERLFLKSKAICPNKDDDEVLSSSDVCKVVQEKLSEFGVSRE 963
Query: 1292 GHSSAAFEKLISGFLQERVAALKK-TRSTLKLDEDNVGKRDTSIMENVAAKVSGVSLKQL 1116
L GF + V +L+ + KL E+ ++ I++ ++SG++ QL
Sbjct: 964 VEKGV----LEVGFSADFVQSLQSFIKDNTKLTEETFTDDNSQILKKFGERISGITRAQL 1019
Query: 1115 QVFLDICFSRYQLKKLEPXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIK 936
+VFL+IC SRY KK+E GEPGTQMTLKTFHFAGVASMNVTLGVPR+K
Sbjct: 1020 EVFLNICLSRYHSKKIEAGAPVGATGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRVK 1079
Query: 935 EIINGAKKISTPIITATLLSDHDDTVARIVKGSIEKTVLGEVAKAIKIVLKSSQPYIAVT 756
EI+NG KKISTPIITA L ARIVKG IEKT LG+VAK+IK+V+ S + +T
Sbjct: 1080 EIMNGNKKISTPIITAILERTDCANTARIVKGRIEKTNLGQVAKSIKVVVTSRLASVVIT 1139
Query: 755 LDTDRIVSLQMRISSDSVKHSILNHPKIKLKPDRVHIMSASKLRIFSSEADRSKLQYELH 576
LD +RI + I ++ VK SIL K KLKP+ + I+ KLR+ + DRSKL ++L+
Sbjct: 1140 LDMERIQDAHLNIDANIVKESILQTKKAKLKPEHIKILDVKKLRVVPQDGDRSKLHFQLN 1199
Query: 575 TLKAMLPKVIVKGIPTVERAVINKQ------GGKYNLLVEGTNLLAVMGSPGIDPCKTRS 414
LK +LP V+VKGI T +R VI+K+ K+ LLVEGT VMG G+D CKT S
Sbjct: 1200 YLKNLLPSVVVKGIKTADRVVISKEEDKITKAEKFKLLVEGTGFREVMGVEGVDGCKTVS 1259
Query: 413 NHVIEVQETLGIEAARKCIINEIQYTM-SSHGMSIDTRHMMLLADLMTYKGEVLGITRFG 237
NH+ EV++TLGIEAAR+CI+ EI+Y M +HGM+IDTRHMMLLAD+MT G +LGI RFG
Sbjct: 1260 NHIHEVRDTLGIEAARECIVKEIKYVMVDTHGMNIDTRHMMLLADVMTATGHILGINRFG 1319
Query: 236 ISKMKESVLMLASFEKTSEHLFNASFNGRDDEIEGVSECIIMGIPMKLGTGILKVQQRVE 57
ISKM +SVLMLASFE+T++ LF AS GRDD I GVSE IIMGIP+ +GTG++KV+QR+E
Sbjct: 1320 ISKMGKSVLMLASFERTADILFQASVRGRDDSIGGVSESIIMGIPITIGTGMIKVKQRLE 1379
Query: 56 QLPELKYAPDPIL 18
LP+L + PIL
Sbjct: 1380 -LPDLPHGASPIL 1391
>ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citrus clementina]
gi|557526635|gb|ESR37941.1| hypothetical protein
CICLE_v10027681mg [Citrus clementina]
Length = 1397
Score = 1675 bits (4337), Expect = 0.0
Identities = 877/1423 (61%), Positives = 1045/1423 (73%), Gaps = 46/1423 (3%)
Frame = -2
Query: 4148 MSRREEKLRCTKEPYIEDVGPRRIKSIRFGMLSGDEIRKLAEVQVWTNRFYDASVKPVPH 3969
+ ++ + + TK+PYIEDVGPR+I+SI+F M+S EI K AEVQV+ ++Y ++ P+
Sbjct: 5 LQQKSQSIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRVPIEG 64
Query: 3968 GLLDPRM---------------GAPNKSSSCSTCHGSHQDCPGHFGYLKLTLPVFNVGYF 3834
GLLDPRM G NKS +C+TCHG +CPGH+GYL L LPV+NVGY
Sbjct: 65 GLLDPRMEKIIFLQRLFFHGFQGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYL 124
Query: 3833 NSILNILKCICKSCARILIADKDRIDYLKKMRNPKIDIAQKNAFVKKIRDRC-----KAG 3669
++IL+ILKCICK C+R+L+ +K DYLKKMRNPK++ +K +K I +C KA
Sbjct: 125 STILDILKCICKYCSRLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMASKAV 184
Query: 3668 RCPRCGSINGTMKKAKASLAVVEDFSKFAGARSEDYHRGAAATKDKAPAPVQTLNMLNAV 3489
+CPRCG ING +KKA A L ++ D SK + E + TK+ A +LN V
Sbjct: 185 KCPRCGYINGMVKKAVAVLGIIHDRSKVTESLQE-FASAITHTKESKAAVNVATYILNPV 243
Query: 3488 SVLALFKRMPDEDCELLNLHDRPEKMIVTNIPVPPLAIRPSVFVDYGKSTNEDSLTSILR 3309
+VL LFKRM D DCE+L L +RPEK+I+TNI VPP+AIRPSV +D G +NE+ +T L+
Sbjct: 244 NVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLK 302
Query: 3308 NVINTNSLLREDIEGGAPAFKCLECWLHLQTQVVEYVNSDAPGLQDSKH-----RGIIQR 3144
+I TN+ L++++ AFK L W LQ +V +Y+NSD G+ S G +QR
Sbjct: 303 RIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQR 362
Query: 3143 LKGKQGRFRCNLSGKRAEFTGRTVISPDPNLKITEVGIPILMARVLTYPERVSHHNIEKL 2964
LKGKQGRFR NLSGKR E+TGRTVISPDPNLKITEV IPI MAR+LTYPERVS HNIEKL
Sbjct: 363 LKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKL 422
Query: 2963 RQCVRNGPFKYPGANYVELPDGTRIFLKFAEKKNVASDLKYGYIVERHLEDGDIVLFNRQ 2784
RQC++NGP KYPGA + PDGT L + +A +LK G IV+RHLEDGD+VLFNRQ
Sbjct: 423 RQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQ 482
Query: 2783 PSLHRMSIMSHRARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALTLMGV 2604
PSLHRMSIM HRARIMPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEAL LMGV
Sbjct: 483 PSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGV 542
Query: 2603 QNNLCTPKNGEILVASTQDFLTSSYLITRRDTFYDRATFSLICSYMGDGMDAIDLPTPSI 2424
QNNLCTPKNGEILVASTQDFLTSS+LITR+DTFYDRA FSL+C YMGDGMD +DLPTP+I
Sbjct: 543 QNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAI 602
Query: 2423 IKPVELWTGKQVFSVLIRPNAGTRVYLNLTVKEKIFSKPV--------GVCPTMCPKDGF 2268
+KPVELWTGKQ+FSVLIRP+A RVY+NLTVKEK +S + TMCP DGF
Sbjct: 603 LKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGF 662
Query: 2267 VYFRNSELISGQLGKTTLGNGNKDGLFSVLLRDYNSHAAACCMNRLAKLSARWIGNHGFS 2088
VYFRNSELISGQLGK TLG CMNRLAKLSARWIGNHGFS
Sbjct: 663 VYFRNSELISGQLGKATLG----------------------CMNRLAKLSARWIGNHGFS 700
Query: 2087 IGIDDVQPGEHLTQQKKQKIDDGYRECHKFISLYNEGKLNLQPGCDSAQTLELNITSVLN 1908
IGIDDVQP + L+ +K + I + Y C+ I YNEGKL L+PGCD+AQTLE IT +LN
Sbjct: 701 IGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILN 760
Query: 1907 QIRGQAGDVCMNTLHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFINRT 1728
+IR AG CM +L WRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAPNGFI+R+
Sbjct: 761 RIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRS 820
Query: 1727 LPHFPINSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLIK 1548
LPHFP +K PAAKGFVANSFY+GL+ATEFFFHTMGGREGLVDTAVKTA+TGYMSRRLIK
Sbjct: 821 LPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIK 880
Query: 1547 GLEDLSLYYDLTVRNASGGVVQFLYGDDGMDPAKMEGKDGLPLNLDQLFSKVMATCPSRG 1368
LEDLS+ YD +VRNA G +VQFLYGDDGMDPA MEGK G PLN D+L KV ATCP G
Sbjct: 881 ALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAG 940
Query: 1367 DEALSPSEILQIMDERFSKYDASSEGHSSAAFEKLISGFLQERVAALKKTRSTLKLDEDN 1188
LSP ++ +I++++ + Y S S AF + F + + L K +K ED
Sbjct: 941 QRYLSPQQVSEIVEKQLAAYGKES---CSEAFLNSLRKFFEGQQDKLDK---KIKFVEDI 994
Query: 1187 VGKRDTSIMENVAAKVSGVSLKQLQVFLDICFSRYQLKKLEPXXXXXXXXXXXXGEPGTQ 1008
+ I+E V K SG++ KQL+VF+ CFSRY +K++E GEPGTQ
Sbjct: 995 GWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYHVKRVEAGTAIGAIGAQSIGEPGTQ 1054
Query: 1007 MTLKTFHFAGVASMNVTLGVPRIKEIINGAKKISTPIITATLLSDHDDTVARIVKGSIEK 828
MTLKTFHFAGVASMN+T GVPRIKEIINGAK+ISTPIITA L + ++ AR+VKG IEK
Sbjct: 1055 MTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEK 1114
Query: 827 TVLGEVAKAIKIVLKSSQPYIAVTLDTDRIVSLQMRISSDSVKHSILNHPKIKLKPDRVH 648
T+LG+VAK+IKIV+ S I + LD + I + I++D VK SI+ PKIKLK +
Sbjct: 1115 TLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIK 1174
Query: 647 IMSASKLRIFSSEADRSKLQYELHTLKAMLPKVIVKGIPTVERAVI------------NK 504
++ KL IF D+SK+ +EL++LK +LP VIVKGI TVER VI N
Sbjct: 1175 VLDFRKLEIF-PPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENG 1233
Query: 503 QGGKYNLLVEGTNLLAVMGSPGIDPCKTRSNHVIEVQETLGIEAARKCIINEIQYTMSSH 324
+ KY LLVEGT L AVMG+ GID CKT+SNH+ EVQ+TLGIEAAR CII+EI TM +H
Sbjct: 1234 EKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAH 1293
Query: 323 GMSIDTRHMMLLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTSEHLFNASFNGRDD 144
GMSID RHMMLLADLMT++GEVLGITRFGI KM +SVLMLASFEKT++HLFNAS NGRDD
Sbjct: 1294 GMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDD 1353
Query: 143 EIEGVSECIIMGIPMKLGTGILKVQQRVEQLPELKY-APDPIL 18
IEGVSECIIMGIPM LGTGILK++QR P LKY APDPI+
Sbjct: 1354 RIEGVSECIIMGIPMPLGTGILKIRQRDAVPPMLKYGAPDPIM 1396
>ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Glycine
max]
Length = 1391
Score = 1673 bits (4333), Expect = 0.0
Identities = 864/1392 (62%), Positives = 1045/1392 (75%), Gaps = 18/1392 (1%)
Frame = -2
Query: 4139 REEKLRCTKEPYIEDVGPRRIKSIRFGMLSGDEIRKLAEVQVWTNRFYDASVKPVPHGLL 3960
R E + TKEP++ED GPR+IK+++F LS EI K+AEVQVW +YD+ KP+ GLL
Sbjct: 5 RTEGITFTKEPFMEDTGPRKIKNMKFSTLSESEISKIAEVQVWKGSYYDSFKKPIHGGLL 64
Query: 3959 DPRMGAPNKSSSCSTCHGSHQDCPGHFGYLKLTLPVFNVGYFNSILNILKCICKSCARIL 3780
DPRMG NKS C+TC G+ DCPGH+GYL L LPVFNVGY ++I+ ILKCICK CARIL
Sbjct: 65 DPRMGPANKSLVCATCDGNFHDCPGHYGYLNLALPVFNVGYLSTIVEILKCICKGCARIL 124
Query: 3779 IADKDRIDYLKKMRNPKIDIAQKNAFVKK--IRDRCKAGRCPRCGSINGTMKKAKASLAV 3606
+ + R +LKKMR+ K K FVK I+D K CPRCG ING++KK ASL +
Sbjct: 125 LDEDTRKKHLKKMRSSKKSELDKIDFVKVRVIKDCSKVVNCPRCGYINGSVKKLPASLTI 184
Query: 3605 VEDFSKFAGARSEDYHRGAAATKDKAPAPVQTLNMLNAVSVLALFKRMPDEDCELLNLHD 3426
+ D SK E+ + KD + +LN VL+LFKRM DEDCELL + +
Sbjct: 185 IHDCSKCRNYIVEELDSALSRMKDSRATTNVSNRILNPFQVLSLFKRMLDEDCELLYVAE 244
Query: 3425 RPEKMIVTNIPVPPLAIRPSVFVDYGKSTNEDSLTSILRNVINTNSLLREDIEGGAPAFK 3246
RPEK+I+TN+ VPP+AIRPSV +D S NE+ +T L+N+I N++LR++++ + K
Sbjct: 245 RPEKLIMTNVVVPPIAIRPSVVMDESLS-NENDITERLKNIIQANAVLRQELQESTFSSK 303
Query: 3245 CLECWLHLQTQVVEYVNSDAPGL----QDSKH-RGIIQRLKGKQGRFRCNLSGKRAEFTG 3081
L+ W LQ +V +++NSD G+ Q +K G +QRLKGK GRFR NLSGKR E+TG
Sbjct: 304 FLDGWDILQNEVAQFINSDVRGIPFYMQPTKQLAGFVQRLKGKHGRFRGNLSGKRVEYTG 363
Query: 3080 RTVISPDPNLKITEVGIPILMARVLTYPERVSHHNIEKLRQCVRNGPFKYPGANYVELPD 2901
RTVISPDPNLKI+EV IPI MAR+LTYPERV+HHNIEKLRQCVRNGP KYPGA +
Sbjct: 364 RTVISPDPNLKISEVAIPIHMARILTYPERVTHHNIEKLRQCVRNGPDKYPGARMLRRDG 423
Query: 2900 GTRIFLKFAEKKNVASDLKYGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 2721
G LK +K A +L+ G IV+RHLEDGDIVLFNRQPSLHRMSIM HRARIMPWRTL
Sbjct: 424 GHSWSLKVLCRKRAADELRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRTL 483
Query: 2720 RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALTLMGVQNNLCTPKNGEILVASTQDFL 2541
RFNESVCNPYNADFDGDEMNLHVPQTEEARTEA+ LMGV+NNLCTPKNGEILVASTQDFL
Sbjct: 484 RFNESVCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVENNLCTPKNGEILVASTQDFL 543
Query: 2540 TSSYLITRRDTFYDRATFSLICSYMGDGMDAIDLPTPSIIKPVELWTGKQVFSVLIRPNA 2361
TSS+LITR+DTFYDR+TFSLICSY+GDGMD IDLPTP+I+KPVELW+GKQ+FS+++RP+A
Sbjct: 544 TSSFLITRKDTFYDRSTFSLICSYIGDGMDPIDLPTPAIVKPVELWSGKQLFSIILRPHA 603
Query: 2360 GTRVYLNLTVKEKIFSKPVGV------CPTMCPKDGFVYFRNSELISGQLGKTTLGNGNK 2199
RVY+NLTVKE+ +++ + T+CP DGFVYFRNSELISGQ+GK TLGNGNK
Sbjct: 604 NMRVYVNLTVKERNYTEDKKIKDKKIEWKTLCPNDGFVYFRNSELISGQVGKVTLGNGNK 663
Query: 2198 DGLFSVLLRDYNSHAAACCMNRLAKLSARWIGNHGFSIGIDDVQPGEHLTQQKKQKIDDG 2019
DGLFSVLLRDY +HAAA CMNRLAKLSARWIGNHGFSIGIDDVQP E L +K + I +G
Sbjct: 664 DGLFSVLLRDYRAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKEILINKKDETISEG 723
Query: 2018 YRECHKFISLYNEGKLNLQPGCDSAQTLELNITSVLNQIRGQAGDVCMNTLHWRNSPLIM 1839
YREC K I +N+GKL L GCD+AQTLE IT VLN +R AG VCM TLHWRNSPLIM
Sbjct: 724 YRECDKHIEAFNKGKLELLAGCDAAQTLETRITGVLNGLRDTAGKVCMQTLHWRNSPLIM 783
Query: 1838 SQCGSKGSPINISQMIACVGQQSVGGRRAPNGFINRTLPHFPINSKTPAAKGFVANSFYT 1659
SQCGSKGS INISQM+ACVGQQSVGGRR PNGFI+R+LPHFP SKTPAAKGFVANSFY+
Sbjct: 784 SQCGSKGSSINISQMVACVGQQSVGGRRTPNGFIDRSLPHFPRKSKTPAAKGFVANSFYS 843
Query: 1658 GLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLIKGLEDLSLYYDLTVRNASGGVVQF 1479
GL+ATEFFFHTMGGREGLVDTAVKTA+TGYMSR+L+K LEDL L+YD TVRNA G +VQF
Sbjct: 844 GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRQLMKSLEDLFLHYDYTVRNAGGSIVQF 903
Query: 1478 LYGDDGMDPAKMEGKDGLPLNLDQLFSKVMATCPS-RGDEALSPSEILQIMDERFSKYDA 1302
YGDDGMDPA MEGK+G PLN ++LF K A CP+ DE LS S++ +++ E+ S++D
Sbjct: 904 CYGDDGMDPAGMEGKNGKPLNFERLFLKSKAICPNDEDDEILSSSDVSKVVHEKLSEFDM 963
Query: 1301 SSEGHSSAAFEKLISGFLQERVAALKK-TRSTLKLDEDNVGKRDTSIMENVAAKVSGVSL 1125
S FE GF + V +L+ + KL E+ + ++ ++SG++
Sbjct: 964 SRLA-EKGVFE---VGFSADFVESLQSFIKDNAKLTEEGFTDEHSQNLKKFGQRISGITR 1019
Query: 1124 KQLQVFLDICFSRYQLKKLEPXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVP 945
KQL VFL+IC SRY KK+E GEPGTQMTLKTFHFAGVASMNVTLGVP
Sbjct: 1020 KQLDVFLNICLSRYHSKKMEAGAPVGATGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVP 1079
Query: 944 RIKEIINGAKKISTPIITATLLSDHDDTVARIVKGSIEKTVLGEVAKAIKIVLKSSQPYI 765
R+KEI+NG KKISTPIITA L D + ARIVKG IEKT LG+VAK+IK+V+ S +
Sbjct: 1080 RVKEIMNGNKKISTPIITAILERDDNANTARIVKGRIEKTNLGQVAKSIKVVMTSRSASV 1139
Query: 764 AVTLDTDRIVSLQMRISSDSVKHSILNHPKIKLKPDRVHIMSASKLRIFSSEADRSKLQY 585
+TLD RI + I ++ VK SIL K KLKP+ + I+ KL + + DRSK+ +
Sbjct: 1140 VITLDMKRIQDAHLNIDANIVKESILRTKKTKLKPEHIKILDIKKLEVVPQDVDRSKIHF 1199
Query: 584 ELHTLKAMLPKVIVKGIPTVERAVINK--QGGKYNLLVEGTNLLAVMGSPGIDPCKTRSN 411
+LH LK +LP V+VKGI TV+R VI+K + K+ LLVEGT VMG GID KT SN
Sbjct: 1200 QLHYLKNLLPTVVVKGIKTVDRVVISKDTKAEKFRLLVEGTGFREVMGVEGIDGRKTVSN 1259
Query: 410 HVIEVQETLGIEAARKCIINEIQYTM-SSHGMSIDTRHMMLLADLMTYKGEVLGITRFGI 234
H+ EV++TLGIEAAR+ I+ EI+YTM +HGM+ID RHMMLLAD+MT G +LGI RFGI
Sbjct: 1260 HIHEVRDTLGIEAARESIVKEIKYTMVDTHGMNIDIRHMMLLADMMTATGHILGINRFGI 1319
Query: 233 SKMKESVLMLASFEKTSEHLFNASFNGRDDEIEGVSECIIMGIPMKLGTGILKVQQRVEQ 54
SKM +SVLMLASFE+T++ LF AS GRDD I GVSE IIMGIP+++GTG++KV+QR++
Sbjct: 1320 SKMGKSVLMLASFERTADILFQASVRGRDDSIGGVSESIIMGIPIQIGTGMIKVKQRLDP 1379
Query: 53 LPELKYAPDPIL 18
PEL + PIL
Sbjct: 1380 -PELPHGTSPIL 1390