BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Stemona21_contig00010570
         (2199 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...   640   0.0  
gb|EXB82802.1| RNA polymerase-associated protein RTF1-like prote...   640   0.0  
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   639   e-180
gb|EMJ18830.1| hypothetical protein PRUPE_ppa002666mg [Prunus pe...   637   e-180
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein...   632   e-178
gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao...   630   e-178
gb|ESW31293.1| hypothetical protein PHAVU_002G226300g [Phaseolus...   629   e-177
ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein...   624   e-176
ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein...   621   e-175
ref|XP_002305685.1| plus-3 domain-containing family protein [Pop...   620   e-175
ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein...   620   e-174
ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citr...   617   e-174
ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein...   615   e-173
ref|XP_002316628.2| plus-3 domain-containing family protein [Pop...   614   e-173
ref|XP_006853567.1| hypothetical protein AMTR_s00032p00242160 [A...   597   e-168
ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein...   591   e-166
ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutr...   588   e-165
ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp....   588   e-165
ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein...   587   e-165
ref|XP_006300844.1| hypothetical protein CARUB_v10019938mg [Caps...   585   e-164

>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
            gi|223541691|gb|EEF43239.1| RNA polymerase-associated
            protein RTF1, putative [Ricinus communis]
          Length = 660

 Score =  640 bits (1651), Expect = 0.0
 Identities = 368/678 (54%), Positives = 437/678 (64%), Gaps = 8/678 (1%)
 Frame = +1

Query: 160  MADLENMLLEAAGRTGSSTRKNQSRSQQKWRRDNHYXXXXXXXXXXXGR----YNKRKPS 327
            MADLEN+LLEAAGRTG+S R   +    + RR+  Y                 Y+ RKPS
Sbjct: 1    MADLENLLLEAAGRTGTSGRNRNALPPSRRRREGSYSDGGSDSRDDDSDDDRGYSSRKPS 60

Query: 328  GSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXXXX--LSIGSDLYKDDEDREVLQK 501
            GSQVPLKKR DP E+                            +G DLYK+++DR  L +
Sbjct: 61   GSQVPLKKRLDPTERDDDQGSQDEGDYDDGNSDREGDSSDGSDVGEDLYKNEDDRRKLAQ 120

Query: 502  LPELQREMILTERSMXXXXXXXXXXXXXXXXXXXXEQKXXXXXXXXXXXXXXXXXXTDRT 681
            + EL+REMIL+ER+                      +                   +   
Sbjct: 121  MSELEREMILSERADKKGDKNLTERIRSKRESERTTRSRKETPPLPSSRGVRTSARSADR 180

Query: 682  TAAKSDALNELRAKRMRQQDPEGYRRSRDMLGGGSSLSTREDSPPKHKKVMPMPLSPASD 861
             AAK DALNEL+A+R++QQDPE +R+ RD    GS   +R  SP K K+     LS    
Sbjct: 181  AAAKDDALNELKARRLKQQDPEAHRKLRDASRRGSG--SRGFSPIKRKRFTSASLS---- 234

Query: 862  STGNDSGGQSDGEEDRFPNDMKLVDSVDD-EPSSLKPLNFEDVKEITIRRRKLAKWLMEP 1038
            S+ ++S  +S  E++    D  + DS DD EP S  P  F+D++EITIRR KLAKW MEP
Sbjct: 235  SSSSESESRSHSEDEGSTGDGGMADSDDDGEPGSQGP-TFDDIREITIRRSKLAKWFMEP 293

Query: 1039 FFEEIIVGCFVRVGIGTTRSGKARYRLCIVRNVDASDPDRQYKFEGYTTHKYLNCVWGTE 1218
            +FEE+IVGCFVRVGIG ++SG   YRLC+VRNVDA+DPDR YK E  TT+KYLN +WG E
Sbjct: 294  WFEELIVGCFVRVGIGRSKSGPI-YRLCLVRNVDAADPDRPYKLENKTTYKYLNVIWGNE 352

Query: 1219 SSAARWQMAMISDSEPTLEEFNDWFSEVERTGGRMPIRQEVYEKKEAIQKINTFVYSAAT 1398
            SSAARWQMAMISDS PT +E+  W  EVER+GGRMP +Q++ EKKEAI+K NTFVYSAAT
Sbjct: 353  SSAARWQMAMISDSAPTEDEYKQWVREVERSGGRMPTKQDILEKKEAIRKSNTFVYSAAT 412

Query: 1399 VKQMLQEKKSASSRPVNVAAEKDRLRKEMEVAENRRDEVEVERIRTRLKELEQMSRLAKQ 1578
            VKQMLQEKKSASSRP+NVAAEKDRLR+E+EVA++++D+ EVERIR R++ELE  SR  + 
Sbjct: 413  VKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSKQDDAEVERIRARIQELE-ASRQTQG 471

Query: 1579 IDSKAVRLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSINYYVSKTXX 1758
             D+KA+RLAEMNRKNRAENF+NASELKPVNTSLKAGEAGYDPFSRRWTRS NYYVSK   
Sbjct: 472  KDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPAG 531

Query: 1759 XXXXXXXXXXXXST-TVANGVMMANGVMNGLXXXXXXXXXXXXXXXXXXXXXXXXGKLVD 1935
                         T  VAN    A GV                            GKLVD
Sbjct: 532  GDAAAATNNEASGTVAVANKTESAAGV---------SAEAGMAATAAALEAAADAGKLVD 582

Query: 1936 TSAPVDQGTESNTLHNFELPISLAALQKFGGPQGAHLGFMARKQRIEAMIGYKVPDNDGR 2115
            T+APVDQGTESNTLHNFELPISL ALQKFGG QGA  GFMARKQRIEA IG +V +ND +
Sbjct: 583  TAAPVDQGTESNTLHNFELPISLTALQKFGGAQGAQAGFMARKQRIEATIGCRVSENDEK 642

Query: 2116 RHALTLTVSDYKRRRGLL 2169
            RH LTLTVSDYKRRRGLL
Sbjct: 643  RHVLTLTVSDYKRRRGLL 660


>gb|EXB82802.1| RNA polymerase-associated protein RTF1-like protein [Morus notabilis]
          Length = 658

 Score =  640 bits (1650), Expect = 0.0
 Identities = 366/676 (54%), Positives = 430/676 (63%), Gaps = 6/676 (0%)
 Frame = +1

Query: 160  MADLENMLLEAAGRTGSSTRKNQSRSQQKWRRDNHYXXXXXXXXXXXGR----YNKRKPS 327
            MA+LEN+LLEAAGRT S+ R   S    + RR+  Y                 Y  RKPS
Sbjct: 1    MAELENLLLEAAGRTRSAGRNRHSIPPSRRRREGSYSDGGSDSRDDDSDDDRGYANRKPS 60

Query: 328  GSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXXXXLSIGSDLYKDDEDREVLQKLP 507
            GSQVPLKKR DP E                           +GSDLYKDD+DR  L ++ 
Sbjct: 61   GSQVPLKKRLDPTEMDDDQGSEEEGDDDRGSDREGDSES-DVGSDLYKDDDDRRKLAEMT 119

Query: 508  ELQREMILTERSMXXXXXXXXXXXXXXXXXXXXEQKXXXXXXXXXXXXXXXXXXTDRTTA 687
            ELQREMIL +R+                       +                   DR  A
Sbjct: 120  ELQREMILLDRASKKEDKNLKEKLRPKWDNKGKATQSRKETPLPSSRVRSSARSADRA-A 178

Query: 688  AKSDALNELRAKRMRQQDPEGYRRSRDMLGGGSSLSTREDSPPKHKKVMPMPLSPASDST 867
            AK DALNELRAKR++QQDPE + + RD   GGS   +R     K K      LS +S S 
Sbjct: 179  AKDDALNELRAKRLKQQDPEAHGKLRDASRGGSG--SRNLLHNKRKSYTATSLSSSSQS- 235

Query: 868  GNDSGGQSDGEEDRFPNDMKLVDSVDDE--PSSLKPLNFEDVKEITIRRRKLAKWLMEPF 1041
              DS  +S  E++    D  ++DS D+   P S + L F+D+KE+T+RR KLAKWLMEPF
Sbjct: 236  --DSESESQSEDEGSTGDGGMIDSDDERGIPGS-EGLTFDDIKEVTVRRSKLAKWLMEPF 292

Query: 1042 FEEIIVGCFVRVGIGTTRSGKARYRLCIVRNVDASDPDRQYKFEGYTTHKYLNCVWGTES 1221
            FEE+IVGCFVRVGIG ++SG   YRLC+VRNVDAS+PDRQYK +   THKYLN VWG E+
Sbjct: 293  FEELIVGCFVRVGIGRSKSGPI-YRLCMVRNVDASEPDRQYKLDNKITHKYLNVVWGNEN 351

Query: 1222 SAARWQMAMISDSEPTLEEFNDWFSEVERTGGRMPIRQEVYEKKEAIQKINTFVYSAATV 1401
            SAARWQMAM+SDS P  EEF  W  EVER+GGRMP + ++ +KKE+I+KINTFVYSAATV
Sbjct: 352  SAARWQMAMVSDSVPNEEEFKQWVREVERSGGRMPTKHDILDKKESIKKINTFVYSAATV 411

Query: 1402 KQMLQEKKSASSRPVNVAAEKDRLRKEMEVAENRRDEVEVERIRTRLKELEQMSRLAKQI 1581
            KQMLQEKKSAS+RP+N+A EKDRLR+E+EVA+++ DEVEV+RI+TRL+ELE  SR AKQ 
Sbjct: 412  KQMLQEKKSASARPLNIALEKDRLRRELEVAQSKNDEVEVDRIKTRLQELE-ASRKAKQT 470

Query: 1582 DSKAVRLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSINYYVSKTXXX 1761
            D+KA+RLAEMNRKNR ENFKNASELKPVNT LKAGEAGYDPFSRRWTRS NYYV K    
Sbjct: 471  DAKAIRLAEMNRKNRVENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVGK---- 526

Query: 1762 XXXXXXXXXXXSTTVANGVMMANGVMNGLXXXXXXXXXXXXXXXXXXXXXXXXGKLVDTS 1941
                            N     +   NG                         GKLVDT+
Sbjct: 527  ---PGEVKEDSGANAGNNGASTDAENNG-RHGIVAAEAGIAATEAALEAAADAGKLVDTN 582

Query: 1942 APVDQGTESNTLHNFELPISLAALQKFGGPQGAHLGFMARKQRIEAMIGYKVPDNDGRRH 2121
            APVDQGT SN LHNFELPISL+ LQKFGGPQGA  GFMARKQRIEA +G +VP+NDGRRH
Sbjct: 583  APVDQGTVSNMLHNFELPISLSVLQKFGGPQGAQAGFMARKQRIEATVGCRVPENDGRRH 642

Query: 2122 ALTLTVSDYKRRRGLL 2169
            ALTL+V DYKRRRGLL
Sbjct: 643  ALTLSVGDYKRRRGLL 658


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Glycine max] gi|571466984|ref|XP_006583809.1| PREDICTED:
            RNA polymerase-associated protein RTF1 homolog isoform X2
            [Glycine max]
          Length = 656

 Score =  639 bits (1649), Expect = e-180
 Identities = 368/676 (54%), Positives = 435/676 (64%), Gaps = 6/676 (0%)
 Frame = +1

Query: 160  MADLENMLLEAAGRTGSSTRKNQSRSQQKWRRDNHYXXXXXXXXXXXG----RYNKRKPS 327
            MADLEN+LLEAAGRTG++ R   S    + R D  Y                 Y  RKPS
Sbjct: 1    MADLENLLLEAAGRTGTAGRNRHSLPSSRRRHDGAYSDGGSDSRDEDSDDELNYASRKPS 60

Query: 328  GSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXXXXLS-IGSDLYKDDEDREVLQKL 504
            GSQVPLKKR DP E+                         S IG DLYKD++DR  L ++
Sbjct: 61   GSQVPLKKRLDPTERDDDLGSQEEADDDGRSDCDGDSSDESNIGDDLYKDEDDRRKLSEM 120

Query: 505  PELQREMILTERSMXXXXXXXXXXXXXXXXXXXXEQKXXXXXXXXXXXXXXXXXXTDRTT 684
             ELQREMIL++R+                                           DR+ 
Sbjct: 121  TELQREMILSDRATKKDDKNLLGKIASKREKGKVAVPRKQSPPMSSSRMRASARSADRS- 179

Query: 685  AAKSDALNELRAKRMRQQDPEGYRRSRDMLGGGSSLSTREDSPPKHKKVMPMPLSPASDS 864
             AK+DALNELRAKR++QQDPE +RR R+      +  +R  SPPK K   P   +  S S
Sbjct: 180  -AKNDALNELRAKRLKQQDPEAHRRLRE---ASRNAGSRHFSPPKRK---PFTSTSLSSS 232

Query: 865  TGNDSGGQSDGEEDRFPNDMKLVDSVDDEP-SSLKPLNFEDVKEITIRRRKLAKWLMEPF 1041
            + ++S  +S  +++    D  +VDS DD   +  +  +F+DVKEITIRR KLAKW MEPF
Sbjct: 233  SHSESESRSHSDDEGSTGDGGIVDSDDDRALAGSEGPSFQDVKEITIRRSKLAKWFMEPF 292

Query: 1042 FEEIIVGCFVRVGIGTTRSGKARYRLCIVRNVDASDPDRQYKFEGYTTHKYLNCVWGTES 1221
            FEE+IVGCFVRVGIG +++G   YRLC+V+NVDAS+PDRQYK E  TT+KYLN VWG ES
Sbjct: 293  FEELIVGCFVRVGIGRSKTGPI-YRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNES 351

Query: 1222 SAARWQMAMISDSEPTLEEFNDWFSEVERTGGRMPIRQEVYEKKEAIQKINTFVYSAATV 1401
            SAARWQMAM+SDS P  EEF  W  EV+R+GGRMP +Q+V EKK+AIQK  TFVYSAATV
Sbjct: 352  SAARWQMAMVSDSAPLEEEFKQWVKEVDRSGGRMPSKQDVLEKKQAIQKAITFVYSAATV 411

Query: 1402 KQMLQEKKSASSRPVNVAAEKDRLRKEMEVAENRRDEVEVERIRTRLKELEQMSRLAKQI 1581
            KQMLQEKKSAS+RP+NVAAEKDRLR+E+E+A+++ DE EVERI+TRL ELE  SR AKQ 
Sbjct: 412  KQMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKYDEAEVERIKTRLLELE-ASRQAKQK 470

Query: 1582 DSKAVRLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSINYYVSKTXXX 1761
            D+KA++LAEMNRKNR ENFKNASE+KPVNT LKAGEAGYDPFSRRWTRS NYY +K    
Sbjct: 471  DAKALKLAEMNRKNRFENFKNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYAAK---- 526

Query: 1762 XXXXXXXXXXXSTTVANGVMMANGVMNGLXXXXXXXXXXXXXXXXXXXXXXXXGKLVDTS 1941
                            NG +   G  NG                         GKLVDTS
Sbjct: 527  ----PGEKAAAGNNSVNGNVAGAG-SNG-TGAPVTAEAGMVATAAALEAAAGAGKLVDTS 580

Query: 1942 APVDQGTESNTLHNFELPISLAALQKFGGPQGAHLGFMARKQRIEAMIGYKVPDNDGRRH 2121
            APVDQGTESN LHNFELPISLA LQKFGG QGA  GFMARKQ+IEA +G++V +NDGRRH
Sbjct: 581  APVDQGTESNMLHNFELPISLALLQKFGGAQGAQAGFMARKQKIEATVGFRVSENDGRRH 640

Query: 2122 ALTLTVSDYKRRRGLL 2169
            ALTLTVSDYKRRRGLL
Sbjct: 641  ALTLTVSDYKRRRGLL 656


>gb|EMJ18830.1| hypothetical protein PRUPE_ppa002666mg [Prunus persica]
          Length = 646

 Score =  637 bits (1642), Expect = e-180
 Identities = 371/678 (54%), Positives = 435/678 (64%), Gaps = 8/678 (1%)
 Frame = +1

Query: 160  MADLENMLLEAAGRTGSSTRKNQSRSQQKWRRDNHYXXXXXXXXXXX---GR-YNKRKPS 327
            MADLEN+LLEAAGRT S+ +   S S  + RR   Y              GR Y  RKPS
Sbjct: 1    MADLENLLLEAAGRTSSAGKSRHSHSSSRRRRGGSYSDGGSDSRGDDSDDGRGYASRKPS 60

Query: 328  GSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXXXXLS-IGSDLYKDDEDREVLQKL 504
            G+QVPLKKR DP E                          S +GSDLYKD++DR  L ++
Sbjct: 61   GTQVPLKKRLDPTEMDDEQGSQEEGDYNDSGSDRGGDSNESDVGSDLYKDEDDRRKLAEM 120

Query: 505  PELQREMILTERSMXXXXXXXXXXXXXXXXXXXXEQKXXXXXXXXXXXXXXXXXXTDRTT 684
             ELQRE+IL++R+                                           DR  
Sbjct: 121  SELQRELILSDRAQKKDDKSLKEKFRPKKETPPLPSSRVRSSARS----------ADRA- 169

Query: 685  AAKSDALNELRAKRMRQQDPEGYRRSRDMLGGGSSLSTREDSPPKHKKVMPMPLSPASDS 864
            AAK DALNELRAKR++QQDPE +R+ RD   G S   +R  S    K    +  S +S S
Sbjct: 170  AAKDDALNELRAKRLKQQDPEAHRKLRDASRGSSG--SRSFSHMTRKSFTAVGRSSSSQS 227

Query: 865  TGNDSGGQSDGEEDRFPNDMKLVDSVDDEPSSLKPLNFEDVKEITIRRRKLAKWLMEPFF 1044
               DS  +S  E+D    +  ++DS DDE S  + L F+D+KEITIRR KLAKWLMEPFF
Sbjct: 228  ---DSDSRSHSEDDGSTGEDPMMDS-DDERS--EGLTFDDIKEITIRRSKLAKWLMEPFF 281

Query: 1045 EEIIVGCFVRVGIGTTRSGKARYRLCIVRNVDASDPDRQYKFEGYTTHKYLNCVWGTESS 1224
            EE+IVGCFVRVGIG ++SG   YRLC+VRNVDASDPDR+YK E  TTHKYLN VWG E+S
Sbjct: 282  EELIVGCFVRVGIGRSKSGPI-YRLCMVRNVDASDPDRKYKLENKTTHKYLNVVWGNENS 340

Query: 1225 AARWQMAMISDSEPTLEEFNDWFSEVERTGGRMPIRQEVYEKKEAIQKINTFVYSAATVK 1404
            AARWQMAMISDS P  EEF  W  EVER+GGR+P +Q+V EKKEAI+KINTFVYSAATVK
Sbjct: 341  AARWQMAMISDSAPLEEEFKQWVREVERSGGRLPSKQDVLEKKEAIKKINTFVYSAATVK 400

Query: 1405 QMLQEKKSASSRPVNVAAEKDRLRKEMEVAENRRDEVEVERIRTRLKELEQMSRLAKQID 1584
            QM++EKKSASSRP+N+A EKDRLR+E+EVA+++ D+ EVERI+TRL++LE   R ++  D
Sbjct: 401  QMIEEKKSASSRPLNIALEKDRLRRELEVAQSKHDDAEVERIKTRLQQLE-ARRQSQGKD 459

Query: 1585 SKAVRLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSINYYVSKTXXXX 1764
            SKAVRLAEMNRKNR ENFKNASELKPV T LKAGEAGYDPFSRRWTRS NYYVSK     
Sbjct: 460  SKAVRLAEMNRKNRVENFKNASELKPVKTGLKAGEAGYDPFSRRWTRSRNYYVSKPGEQK 519

Query: 1765 XXXXXXXXXXSTTV---ANGVMMANGVMNGLXXXXXXXXXXXXXXXXXXXXXXXXGKLVD 1935
                             +NG  +   V  G+                        GKL+D
Sbjct: 520  GEAEAIVDADGALADIESNGTAVVGAVRAGM-----------AATAAALEAAAGAGKLID 568

Query: 1936 TSAPVDQGTESNTLHNFELPISLAALQKFGGPQGAHLGFMARKQRIEAMIGYKVPDNDGR 2115
            TSAPVD GTESN +HNFELPISLA LQKFGGPQGA  GF+ARKQRIEA +G +VP+NDGR
Sbjct: 569  TSAPVDFGTESNLMHNFELPISLATLQKFGGPQGAQEGFLARKQRIEATVGCRVPENDGR 628

Query: 2116 RHALTLTVSDYKRRRGLL 2169
            RHALTLTVSDYKRR GLL
Sbjct: 629  RHALTLTVSDYKRRMGLL 646


>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
            max]
          Length = 656

 Score =  632 bits (1630), Expect = e-178
 Identities = 362/678 (53%), Positives = 430/678 (63%), Gaps = 8/678 (1%)
 Frame = +1

Query: 160  MADLENMLLEAAGRTGSSTRKNQSRSQQKWRRDNHYXXXXXXXXXXXG----RYNKRKPS 327
            MADLEN+LLEAAGRTG++ R   S    + R D  Y                 Y  RKPS
Sbjct: 1    MADLENLLLEAAGRTGTAGRNRHSLPPSRRRHDGAYSDGGSDSRDDDSDDELNYASRKPS 60

Query: 328  GSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXXXXLS-IGSDLYKDDEDREVLQKL 504
            GSQVPLKKR DP E+                         S IG DLYKD++DR  L ++
Sbjct: 61   GSQVPLKKRLDPTERDDDLGSQEEADDDGRSDHDGDSSDESNIGDDLYKDEDDRRKLSEM 120

Query: 505  PELQREMILTERSMXXXXXXXXXXXXXXXXXXXXEQKXXXXXXXXXXXXXXXXXXTDRTT 684
             ELQREMIL++R+                                           DR+ 
Sbjct: 121  TELQREMILSDRATKKDDKNLLGKIASKREKGKAAAPRKQSPPMSSSRMRASARSADRS- 179

Query: 685  AAKSDALNELRAKRMRQQDPEGYRRSRDMLGGGSSLSTREDSPPKHKKVMPMPLSPASDS 864
             AK+DALNELRAKR++QQDPE +RR R+      +   R  SPPK K      LS +S S
Sbjct: 180  -AKNDALNELRAKRLKQQDPEAHRRLRE---ASRNAGPRHFSPPKRKTFTSTSLSSSSHS 235

Query: 865  TGNDSGGQSDGEEDRFPNDMKLVDSVDDEP-SSLKPLNFEDVKEITIRRRKLAKWLMEPF 1041
               +S  +S  +++    D  + DS DD   +  +  +F+D+KEITIRR KLAKW MEPF
Sbjct: 236  ---ESESRSHSDDEGSTGDGGIADSDDDRALAGSEGPSFQDIKEITIRRSKLAKWFMEPF 292

Query: 1042 FEEIIVGCFVRVGIGTTRSGKARYRLCIVRNVDASDPDRQYKFEGYTTHKYLNCVWGTES 1221
            FEE+IVGCFVRVGIG +++G   YRLC+V+NVDAS+PDRQYK E  TT+KYLN VWG ES
Sbjct: 293  FEELIVGCFVRVGIGRSKTGPI-YRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNES 351

Query: 1222 SAARWQMAMISDSEPTLEEFNDWFSEVERTGGRMPIRQEVYEKKEAIQKINTFVYSAATV 1401
            SAARWQMAM+SDS P  EEF  W  EV+ +GGRMP +Q+V EKK+AIQK  TFVYSAATV
Sbjct: 352  SAARWQMAMVSDSAPMEEEFKQWVKEVDCSGGRMPSKQDVLEKKQAIQKAITFVYSAATV 411

Query: 1402 KQMLQEKKSASSRPVNVAAEKDRLRKEMEVAENRRDEVEVERIRTRLKELEQMSRLAKQI 1581
            KQMLQEKKSAS+RP+NVAAEKDRLR+E+E+A+++ DE EVERI+TRL+ELE  SR AKQ 
Sbjct: 412  KQMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKHDEAEVERIKTRLQELE-ASRQAKQK 470

Query: 1582 DSKAVRLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSINYYVSKTXXX 1761
            D+KA++LAEMNRKNR ENFKNASELKPVN  LKAGEAGYDPFSRRWTRS NYY +K    
Sbjct: 471  DAKALKLAEMNRKNRFENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYAAK---- 526

Query: 1762 XXXXXXXXXXXSTTVANGVMMAN--GVMNGLXXXXXXXXXXXXXXXXXXXXXXXXGKLVD 1935
                            N ++  N  G  +                          GKLVD
Sbjct: 527  --------PGEKAAAGNNIVNGNVAGAGSNATGAPVTAEAGMVATAAALEAAAGAGKLVD 578

Query: 1936 TSAPVDQGTESNTLHNFELPISLAALQKFGGPQGAHLGFMARKQRIEAMIGYKVPDNDGR 2115
            TSAPVDQGTESN LHNFELPISLA LQK+GG  GA  GFMARKQRIE+ +G++V +NDGR
Sbjct: 579  TSAPVDQGTESNMLHNFELPISLALLQKYGGAPGAQAGFMARKQRIESTVGFRVSENDGR 638

Query: 2116 RHALTLTVSDYKRRRGLL 2169
            RHALTLTVSDYKRRRGLL
Sbjct: 639  RHALTLTVSDYKRRRGLL 656


>gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao]
            gi|508781058|gb|EOY28314.1| PAF1 complex component
            isoform 1 [Theobroma cacao]
          Length = 660

 Score =  630 bits (1626), Expect = e-178
 Identities = 361/677 (53%), Positives = 431/677 (63%), Gaps = 7/677 (1%)
 Frame = +1

Query: 160  MADLENMLLEAAGRTGSSTRKNQSRSQQKWRRDNHYXXXXXXXXXXXGR----YNKRKPS 327
            MADLEN+LLEAAGRTG+  R   S    + RR+  Y                 Y  RKPS
Sbjct: 1    MADLENLLLEAAGRTGTGGRNRHSLPPSRRRREGSYSDGGSDSRDDDSDDDHGYASRKPS 60

Query: 328  GSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXXXX--LSIGSDLYKDDEDREVLQK 501
            GSQVPLKKR DP E+                            +G DLYK+++DR  L +
Sbjct: 61   GSQVPLKKRLDPAERDDDQGSQEEGDYDDGVSVHEGDSSDESDVGDDLYKNEDDRRKLAQ 120

Query: 502  LPELQREMILTERSMXXXXXXXXXXXXXXXXXXXXEQKXXXXXXXXXXXXXXXXXXTDRT 681
            + EL+RE+IL+ER+                      +                   +   
Sbjct: 121  MTELERELILSERADKRGDKKFTEKIRSKRENDRPSRSRKETPPLPSSRGVRSSARSADR 180

Query: 682  TAAKSDALNELRAKRMRQQDPEGYRRSRDMLGGGSSLSTREDSPPKHKKVMPMPLSPASD 861
             AAK DALNELRAKR++QQDPE +R+ RD   G S   +R  SP K K   P   S  S 
Sbjct: 181  AAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSSG--SRGLSPVKRK---PFTASSLSS 235

Query: 862  STGNDSGGQSDGEEDRFPNDMKLVDSVDDEP-SSLKPLNFEDVKEITIRRRKLAKWLMEP 1038
            S+ +DS  +S+ E++    D  +VDS DD          F+D+KEITIRR KLAKW MEP
Sbjct: 236  SSQSDSESRSNSEDEGSTGDGGMVDSDDDRGMQGPDGPTFDDIKEITIRRSKLAKWFMEP 295

Query: 1039 FFEEIIVGCFVRVGIGTTRSGKARYRLCIVRNVDASDPDRQYKFEGYTTHKYLNCVWGTE 1218
            FFEE+IVGC+VRVGIG ++SG   YRLC+VRNVDA++P+R YK E  TT+KYLN VWG E
Sbjct: 296  FFEELIVGCYVRVGIGRSKSGPI-YRLCMVRNVDATEPERTYKLENKTTYKYLNVVWGNE 354

Query: 1219 SSAARWQMAMISDSEPTLEEFNDWFSEVERTGGRMPIRQEVYEKKEAIQKINTFVYSAAT 1398
            SSAARWQMAMISDS P  EEF     E+ER+GGRMP +Q+V EKKEA+QK  TFVYSAAT
Sbjct: 355  SSAARWQMAMISDSPPQEEEFRQLIRELERSGGRMPSKQDVLEKKEALQKAKTFVYSAAT 414

Query: 1399 VKQMLQEKKSASSRPVNVAAEKDRLRKEMEVAENRRDEVEVERIRTRLKELEQMSRLAKQ 1578
            VKQMLQEKKS SSRP+N+AAEKDRLR+++E+A+++ DE EVERI+ RL++LE  SR A++
Sbjct: 415  VKQMLQEKKSTSSRPLNIAAEKDRLRRDLEIAQSKHDEAEVERIKMRLQQLE-ASRQAQE 473

Query: 1579 IDSKAVRLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSINYYVSKTXX 1758
             D+KAVRLAEMNRKNRAENFKNASELKPVNT LKAGEAGYDPFSRRWTRS NYYV+K   
Sbjct: 474  KDAKAVRLAEMNRKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVAK--- 530

Query: 1759 XXXXXXXXXXXXSTTVANGVMMANGVMNGLXXXXXXXXXXXXXXXXXXXXXXXXGKLVDT 1938
                        +  VANG  +                                GKLVDT
Sbjct: 531  -------PPGADAAAVANGDRIGVIASGNGNDARAAAEAGRAATVAALQEAAGAGKLVDT 583

Query: 1939 SAPVDQGTESNTLHNFELPISLAALQKFGGPQGAHLGFMARKQRIEAMIGYKVPDNDGRR 2118
            SAPVD+GTESN LH+FE+PISL ALQ+FGGPQGA  GFMARKQRIEA +G +VP+NDGRR
Sbjct: 584  SAPVDEGTESNMLHDFEIPISLNALQRFGGPQGAVAGFMARKQRIEATVGCQVPENDGRR 643

Query: 2119 HALTLTVSDYKRRRGLL 2169
            HALTLTVSDYKRRRGLL
Sbjct: 644  HALTLTVSDYKRRRGLL 660


>gb|ESW31293.1| hypothetical protein PHAVU_002G226300g [Phaseolus vulgaris]
          Length = 654

 Score =  629 bits (1623), Expect = e-177
 Identities = 358/677 (52%), Positives = 432/677 (63%), Gaps = 7/677 (1%)
 Frame = +1

Query: 160  MADLENMLLEAAGRTGSSTRKNQSRSQQKWRRDNHYXXXXXXXXXXXG----RYNKRKPS 327
            MADLEN+LLEAAGRTG+S R   S    + R D  Y                 Y  RKPS
Sbjct: 1    MADLENLLLEAAGRTGTSGRNRHSLPPSRRRHDGAYSDGGSDSRDDDSDDELNYASRKPS 60

Query: 328  GSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXXXX--LSIGSDLYKDDEDREVLQK 501
            GSQVPLKKR DP E+                           +IG DLYKD++DR  L +
Sbjct: 61   GSQVPLKKRLDPSERDDDLGSQEEADDDDGHSDHDGDSSDESNIGDDLYKDEDDRRKLSE 120

Query: 502  LPELQREMILTERSMXXXXXXXXXXXXXXXXXXXXEQKXXXXXXXXXXXXXXXXXXTDRT 681
            + ELQREMIL++R+                                           DR+
Sbjct: 121  MTELQREMILSDRATKKDDKNLLGKIASKREKGKVSVPRKQSPPMSSSRMRASARSADRS 180

Query: 682  TAAKSDALNELRAKRMRQQDPEGYRRSRDMLGGGSSLSTREDSPPKHKKVMPMPLSPASD 861
              AK+DALNELRAKR++QQDPE +R+ R+      +   R  SPPK K   P   +  S 
Sbjct: 181  --AKNDALNELRAKRLKQQDPEAHRKLRE---ASRNAGPRHFSPPKRK---PFTSTSLSS 232

Query: 862  STGNDSGGQSDGEEDRFPNDMKLVDSVDDEP-SSLKPLNFEDVKEITIRRRKLAKWLMEP 1038
            S+ ++S  +S  +++    D  + DS DD   +  +  +F+D+KEITIRR KLAKW MEP
Sbjct: 233  SSHSESESRSHSDDEGSTGDGGIGDSDDDRALTGSEGPSFQDIKEITIRRSKLAKWFMEP 292

Query: 1039 FFEEIIVGCFVRVGIGTTRSGKARYRLCIVRNVDASDPDRQYKFEGYTTHKYLNCVWGTE 1218
            FFEE+IVGCFVRVGIG +++G   YRLC+V+NVDAS+PDRQYK E  TT+KYLN VWG E
Sbjct: 293  FFEELIVGCFVRVGIGRSKTGPI-YRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNE 351

Query: 1219 SSAARWQMAMISDSEPTLEEFNDWFSEVERTGGRMPIRQEVYEKKEAIQKINTFVYSAAT 1398
            SSAARWQMAM+SDS P  EEF  W  EV+R+GGRMP +Q+V EKK+AIQK  TFVYSAAT
Sbjct: 352  SSAARWQMAMVSDSAPLEEEFKQWVKEVDRSGGRMPTKQDVLEKKQAIQKAITFVYSAAT 411

Query: 1399 VKQMLQEKKSASSRPVNVAAEKDRLRKEMEVAENRRDEVEVERIRTRLKELEQMSRLAKQ 1578
            VKQMLQEKKSAS+RP+NVAAEKDRLR+E+E+A+++ DE EV+RI+ RL+ELE  SR AKQ
Sbjct: 412  VKQMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKHDEAEVDRIKARLQELE-ASRHAKQ 470

Query: 1579 IDSKAVRLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSINYYVSKTXX 1758
             D+KA++LAEMNRKNR ENFKNASELKPVNT LKAGEAGYDPFSRRWTRS NYY  +   
Sbjct: 471  KDAKALKLAEMNRKNRFENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYTGE--- 527

Query: 1759 XXXXXXXXXXXXSTTVANGVMMANGVMNGLXXXXXXXXXXXXXXXXXXXXXXXXGKLVDT 1938
                             NG++   G  +                          GKLVDT
Sbjct: 528  --------KAAAGNNSVNGIVAGPGTNS--TGAPVTAEAGLVATAAALEAAADAGKLVDT 577

Query: 1939 SAPVDQGTESNTLHNFELPISLAALQKFGGPQGAHLGFMARKQRIEAMIGYKVPDNDGRR 2118
            SAPVDQGTESN LHNFELPISLA LQK+GG QGA  GFMARKQRIE+ +G++V +NDGRR
Sbjct: 578  SAPVDQGTESNMLHNFELPISLALLQKYGGAQGAQAGFMARKQRIESTVGFRVLENDGRR 637

Query: 2119 HALTLTVSDYKRRRGLL 2169
            H+LTL+VSDYKRRRGLL
Sbjct: 638  HSLTLSVSDYKRRRGLL 654


>ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Cicer arietinum] gi|502142571|ref|XP_004505023.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform X2 [Cicer arietinum]
          Length = 658

 Score =  624 bits (1610), Expect = e-176
 Identities = 364/678 (53%), Positives = 433/678 (63%), Gaps = 8/678 (1%)
 Frame = +1

Query: 160  MADLENMLLEAAGRTGSSTRKNQ-SRSQQKWRRDNHYXXXXXXXXXXXG----RYNKRKP 324
            MADLEN+LLEAAGRTG +  +N+ S    + RRD  Y                 Y  RKP
Sbjct: 1    MADLENLLLEAAGRTGGAAGRNRHSIPPSRRRRDGSYSDGGSDSRDDDSDDELNYPSRKP 60

Query: 325  SGSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXXXX--LSIGSDLYKDDEDREVLQ 498
            SGSQVPLKKR DP E+                           +IG DLYKD++DR  L 
Sbjct: 61   SGSQVPLKKRLDPTERDDDLGSQEEADDDDGRSDREGDSSDESNIGDDLYKDEDDRRKLS 120

Query: 499  KLPELQREMILTERSMXXXXXXXXXXXXXXXXXXXXEQKXXXXXXXXXXXXXXXXXXTDR 678
            ++ ELQREMIL++R+                                           DR
Sbjct: 121  EMSELQREMILSDRASKKDDKSLLGKIASKREKGKAIMTGKQSPPLSSSRMRASARSADR 180

Query: 679  TTAAKSDALNELRAKRMRQQDPEGYRRSRDMLGGGSSLSTREDSPPKHKKVMPMPLSPAS 858
            +  AK+ ALNELRAKR++QQDPE  RR R+      +   R  SPPK K      LS +S
Sbjct: 181  S--AKNVALNELRAKRLKQQDPEARRRLRE---ASRNSGPRRFSPPKRKSFTSANLSSSS 235

Query: 859  DSTGNDSGGQSDGEEDRFPNDMKLVDSVDDEP-SSLKPLNFEDVKEITIRRRKLAKWLME 1035
             S   DS  +S  +++    D  + DS DD   S  +  +F+D+KEITIRR KLAKW ME
Sbjct: 236  HS---DSDSRSHSDDEGSTGDGGIADSDDDRALSGSEGPSFQDIKEITIRRSKLAKWFME 292

Query: 1036 PFFEEIIVGCFVRVGIGTTRSGKARYRLCIVRNVDASDPDRQYKFEGYTTHKYLNCVWGT 1215
            PFFEE+IVGCFVRVGIG +++G   YRLC+V+NVD+SDPDRQYK E  TTHKYLN VWG 
Sbjct: 293  PFFEELIVGCFVRVGIGRSKTGPI-YRLCMVKNVDSSDPDRQYKLENRTTHKYLNVVWGN 351

Query: 1216 ESSAARWQMAMISDSEPTLEEFNDWFSEVERTGGRMPIRQEVYEKKEAIQKINTFVYSAA 1395
            ESSAARWQMAM+SDS P  EEF  W  EVER+GGRMP +Q+V EKK+AIQKI TFVYSA 
Sbjct: 352  ESSAARWQMAMVSDSFPLEEEFKQWVKEVERSGGRMPTKQDVLEKKQAIQKIITFVYSAD 411

Query: 1396 TVKQMLQEKKSASSRPVNVAAEKDRLRKEMEVAENRRDEVEVERIRTRLKELEQMSRLAK 1575
            TVKQMLQEKKS+SSRP+NVAAEKDRLR+EME+A+++ DE EVERI+TR++ELE  SR AK
Sbjct: 412  TVKQMLQEKKSSSSRPLNVAAEKDRLRREMEIAQSKNDEAEVERIKTRVQELE-ASRHAK 470

Query: 1576 QIDSKAVRLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSINYYVSKTX 1755
              D+KA++LAEMNRKNR ENFKNASEL+PVN  LKAGEAGYDPFSRRWTRS NYYV+K  
Sbjct: 471  VKDAKALKLAEMNRKNRFENFKNASELRPVNIGLKAGEAGYDPFSRRWTRSRNYYVAK-- 528

Query: 1756 XXXXXXXXXXXXXSTTVANGVMMANGVMNGLXXXXXXXXXXXXXXXXXXXXXXXXGKLVD 1935
                         +TT    V++A+   N +                        GKLVD
Sbjct: 529  ----PGEKAAARKNTT---NVLVADAGSN-ITGVPVTAESGVVATAAALEAAADAGKLVD 580

Query: 1936 TSAPVDQGTESNTLHNFELPISLAALQKFGGPQGAHLGFMARKQRIEAMIGYKVPDNDGR 2115
            TSAPVDQGTESN LHNFELPISLA L K+GG QGA  GFMARKQR+EA +G++V +NDGR
Sbjct: 581  TSAPVDQGTESNFLHNFELPISLALLHKYGGAQGAQAGFMARKQRMEATVGFRVSENDGR 640

Query: 2116 RHALTLTVSDYKRRRGLL 2169
            RH LTL+V DYKRRRGLL
Sbjct: 641  RHVLTLSVGDYKRRRGLL 658


>ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria
            vesca subsp. vesca]
          Length = 657

 Score =  621 bits (1601), Expect = e-175
 Identities = 359/679 (52%), Positives = 429/679 (63%), Gaps = 9/679 (1%)
 Frame = +1

Query: 160  MADLENMLLEAAGRTGSSTRKNQSRSQQKWRRDNHYXXXXXXXXXXX---GR-YNKRKPS 327
            MADL+++LLEAAGRT S  +   S S  K RRD+ Y              GR Y  RKPS
Sbjct: 1    MADLDDLLLEAAGRTSSGRKSRHSHSSSKRRRDDSYSDGGSDSRGDDSDDGRGYASRKPS 60

Query: 328  GSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXXXXLS-IGSDLYKDDEDREVLQKL 504
            GSQVPLKKR DP E                          S +GSDLYKD+ DR  L ++
Sbjct: 61   GSQVPLKKRLDPSEVGDEHDSQDEGDYNDSGSDRGGESNESDVGSDLYKDENDRRKLAEM 120

Query: 505  PELQREMILTERSMXXXXXXXXXXXXXXXXXXXXEQKXXXXXXXXXXXXXXXXXXTDRTT 684
             ELQRE+IL++R+                      Q                    DR  
Sbjct: 121  SELQRELILSDRAQKKDDKSLKEKFRPKWDKGKATQSRKVTPPLPSSRVRSSARSADRA- 179

Query: 685  AAKSDALNELRAKRMRQQDPEGYRRSRDMLGGGSSLSTREDSPPKHKKVMPMPLSPASDS 864
            AAK DALNELRAKR++QQDPE +R+ RD+  G  S+ ++  S    K    +  S +S S
Sbjct: 180  AAKDDALNELRAKRLKQQDPEAHRKLRDVSRG--SVGSKNFSHTIKKSFSAVRRSSSSQS 237

Query: 865  TGNDSGGQSDGEEDRFPNDMKLVDSVD-DEPSSLKPLNFEDVKEITIRRRKLAKWLMEPF 1041
               DS  +S  ++D    D    D++D D+    + L FED+KEITIRR +LAKWLMEPF
Sbjct: 238  ---DSESRSHSDDDGSSAD----DAIDSDDERGNQGLTFEDIKEITIRRSRLAKWLMEPF 290

Query: 1042 FEEIIVGCFVRVGIGTTRSGKARYRLCIVRNVDASDPDRQYKFEGYTTHKYLNCVWGTES 1221
            FEE+IVGC VRVGIG T+SG+  YRLC V NVD+SDPDRQYK E  TTHKYLN VWG E+
Sbjct: 291  FEELIVGCCVRVGIGKTKSGRPIYRLCSVCNVDSSDPDRQYKLENKTTHKYLNVVWGNEN 350

Query: 1222 SAARWQMAMISDSEPTLEEFNDWFSEVERTGGRMPIRQEVYEKKEAIQKINTFVYSAATV 1401
            SAARWQMAM+SDS P  EE++ W  EVE+ GGR+P +++V EKKEAI+K NTFVYSA TV
Sbjct: 351  SAARWQMAMVSDSLPLEEEYDQWVREVEKNGGRLPSKEDVLEKKEAIKKTNTFVYSAKTV 410

Query: 1402 KQMLQEKKSASSRPVNVAAEKDRLRKEMEVAENRRDEVEVERIRTRLKELEQMSRLAKQI 1581
            KQM+QEKKSASSRP+N+A EKDRLR+E+E+A+++ D+ EVERI+ RL++LE   + ++  
Sbjct: 411  KQMIQEKKSASSRPLNIALEKDRLRRELEIAQSKHDDAEVERIKARLEQLEARQQ-SQGK 469

Query: 1582 DSKAVRLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSINYYVSKTXXX 1761
            DSKAVRLAEMNRKNR +NFKNAS LKPV T LKAGEAGYDPFSRRWTRS NYYVSK    
Sbjct: 470  DSKAVRLAEMNRKNRVDNFKNASGLKPVKTGLKAGEAGYDPFSRRWTRSRNYYVSKPDEQ 529

Query: 1762 XXXXXXXXXXXSTTV---ANGVMMANGVMNGLXXXXXXXXXXXXXXXXXXXXXXXXGKLV 1932
                        +      NG      V  GL                        GKL+
Sbjct: 530  KDDAEANAVAAESLAEVETNGTGGVVAVRAGL-----------EATAAALEAAAGAGKLI 578

Query: 1933 DTSAPVDQGTESNTLHNFELPISLAALQKFGGPQGAHLGFMARKQRIEAMIGYKVPDNDG 2112
            DT APVDQGT SN LHNFELPISLA LQKFGGPQGA  GFMARKQRIEA +G +VP++DG
Sbjct: 579  DTMAPVDQGTSSNPLHNFELPISLATLQKFGGPQGAQEGFMARKQRIEATVGVRVPEDDG 638

Query: 2113 RRHALTLTVSDYKRRRGLL 2169
            RRHALTL+VSDYKRRRGLL
Sbjct: 639  RRHALTLSVSDYKRRRGLL 657


>ref|XP_002305685.1| plus-3 domain-containing family protein [Populus trichocarpa]
            gi|222848649|gb|EEE86196.1| plus-3 domain-containing
            family protein [Populus trichocarpa]
          Length = 662

 Score =  620 bits (1599), Expect = e-175
 Identities = 357/678 (52%), Positives = 434/678 (64%), Gaps = 8/678 (1%)
 Frame = +1

Query: 160  MADLENMLLEAAGRTGSSTR-KNQSRSQQKWRRDNHYXXXXXXXXXXXGR----YNKRKP 324
            MADLEN+LLEAAGRTG S R +N     ++ +R+  Y                 Y  RKP
Sbjct: 1    MADLENLLLEAAGRTGKSGRNRNSILPSRRRKREGSYSDGGSDSRDDDSDDDRGYANRKP 60

Query: 325  SGSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXXXX--LSIGSDLYKDDEDREVLQ 498
            SGSQVPLKKR +  E+                            IG DLYKD++DR+ L 
Sbjct: 61   SGSQVPLKKRLETNERDGEEGSQDEGDYDGGGSDREGGSSDESDIGDDLYKDEDDRKKLA 120

Query: 499  KLPELQREMILTERSMXXXXXXXXXXXXXXXXXXXXEQKXXXXXXXXXXXXXXXXXXTDR 678
            ++ EL RE+IL +R+                      +                   +  
Sbjct: 121  QMSELDRELILADRADKKGDKHLTEKIRLKRDNDKPTRSRKETPPLPSSRGVRSSARSAD 180

Query: 679  TTAAKSDALNELRAKRMRQQDPEGYRRSRDMLGGGSSLSTREDSPPKHKKVMPMPLSPAS 858
              AAK DALNELRAKR++QQDPE +R+ RD+  G  S  +R  S  K        LS   
Sbjct: 181  RAAAKDDALNELRAKRLKQQDPEAHRKLRDVSRG--SAGSRGFSQVKKNNFTSASLS--- 235

Query: 859  DSTGNDSGGQSDGEEDRFPNDMKLVDSVDD-EPSSLKPLNFEDVKEITIRRRKLAKWLME 1035
             S+ ++SG +S  E++    D  + DS +D EP S  P  +ED+KEITIRR KLAKW ME
Sbjct: 236  -SSSSESGSRSHSEDEGSTGDGGMADSDEDVEPGSKGP-TYEDIKEITIRRTKLAKWFME 293

Query: 1036 PFFEEIIVGCFVRVGIGTTRSGKARYRLCIVRNVDASDPDRQYKFEGYTTHKYLNCVWGT 1215
            P+FEE+I+GCFVRVGIG ++SG   YRLC+VRNVDA++PD+ YK E  +T+KYLN  WG 
Sbjct: 294  PWFEELIIGCFVRVGIGRSKSGPV-YRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGA 352

Query: 1216 ESSAARWQMAMISDSEPTLEEFNDWFSEVERTGGRMPIRQEVYEKKEAIQKINTFVYSAA 1395
            ++SAARWQMAM+SDS PT EE+  W  EVE  GGR+P +Q++ EKKEAI+K NTFVYSAA
Sbjct: 353  DTSAARWQMAMVSDSGPTEEEYKQWVREVECGGGRLPSKQDILEKKEAIRKSNTFVYSAA 412

Query: 1396 TVKQMLQEKKSASSRPVNVAAEKDRLRKEMEVAENRRDEVEVERIRTRLKELEQMSRLAK 1575
            TVKQMLQEKKSASSRP+NVAAEKDRLR+E+E+A+++ DE EVERI  R++ELE  SR AK
Sbjct: 413  TVKQMLQEKKSASSRPLNVAAEKDRLRRELEIAQSKHDEAEVERINARIEELE-ASRHAK 471

Query: 1576 QIDSKAVRLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSINYYVSKTX 1755
              D+KA+RLAEMNRKNR ENF+NASE+KPVNT LKAGEAGYDPFSRRWTRS NYYVSK  
Sbjct: 472  VKDAKAIRLAEMNRKNRVENFRNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYVSKPA 531

Query: 1756 XXXXXXXXXXXXXSTTVANGVMMANGVMNGLXXXXXXXXXXXXXXXXXXXXXXXXGKLVD 1935
                         + TVA  V  +N V+ G+                        GKLVD
Sbjct: 532  EADDPVATKISEANETVA--VAASNQVVAGV-----MSEAGVAATEAALEAAADAGKLVD 584

Query: 1936 TSAPVDQGTESNTLHNFELPISLAALQKFGGPQGAHLGFMARKQRIEAMIGYKVPDNDGR 2115
            TSAPVDQGTESNT+H+FEL ISL ALQ+FGGPQGA  GFMARKQRIEA +G +VP+NDGR
Sbjct: 585  TSAPVDQGTESNTMHSFELEISLIALQEFGGPQGAQAGFMARKQRIEATVGCRVPENDGR 644

Query: 2116 RHALTLTVSDYKRRRGLL 2169
            RHALTLTV DYKRRRGLL
Sbjct: 645  RHALTLTVGDYKRRRGLL 662


>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
            sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA
            polymerase-associated protein RTF1 homolog [Cucumis
            sativus]
          Length = 660

 Score =  620 bits (1598), Expect = e-174
 Identities = 362/680 (53%), Positives = 428/680 (62%), Gaps = 10/680 (1%)
 Frame = +1

Query: 160  MADLENMLLEAAGRTGSSTRKNQSRSQQKWRRDNHYXXXXXXXXXXXGR----YNKRKPS 327
            MADLEN+LLEAAGRT ++ R   S    + +R+  Y                 Y  RKPS
Sbjct: 1    MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS 60

Query: 328  GSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXXXX--LSIGSDLYKDDEDREVLQK 501
            GSQVPLKKR DP E+                            +G DLYKDD+DR  L  
Sbjct: 61   GSQVPLKKRLDPTERDDDGGSQEEGEDEDVGSEREGDSSDESDVGDDLYKDDDDRRKLAG 120

Query: 502  LPELQREMILTERSMXXXXXXXXXXXXXXXXXXXXEQKXXXXXXXXXXXXXXXXXXTDRT 681
            + ELQREMIL++R+                                           DR 
Sbjct: 121  MSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRA 180

Query: 682  TAAKSDALNELRAKRMRQQDPEGYRRSRDMLGGGSSLSTREDSPPKHKKVMPMPLSPASD 861
             AAK DALNELRAKR++QQDPE +R+ RD   G ++  +R  SP K K      LS +S 
Sbjct: 181  -AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNAN--SRRFSPTKRKPFTAPSLSSSSQ 237

Query: 862  STGNDSGGQSDGEEDRFPNDMKLVDSVDDE--PSSLKPLNFEDVKEITIRRRKLAKWLME 1035
            S  ++S  QSD E      D  ++DS D+   P S  P  FED+KE+TIRR KLAKWLME
Sbjct: 238  SE-SESRFQSDDEGST--GDGGMIDSDDERSIPGSDGP-TFEDIKEVTIRRSKLAKWLME 293

Query: 1036 PFFEEIIVGCFVRVGIGTTRSGKARYRLCIVRNVDASDPDRQYKFEGYTTHKYLNCVWGT 1215
            PFFEE+IVGCFVRVGIG +RSG   YRLC+VRNVDA++PDRQYK E   THKYLN +WG 
Sbjct: 294  PFFEELIVGCFVRVGIGRSRSGPI-YRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGN 352

Query: 1216 ESSAARWQMAMISDSEPTLEEFNDWFSEVERTGGRMPIRQEVYEKKEAIQKINTFVYSAA 1395
            E+SAARWQMAM+SDS P  +E+  W  EVERTGGRM  +Q++ EKKEAIQK+N FVYSAA
Sbjct: 353  EASAARWQMAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAA 412

Query: 1396 TVKQMLQEKKSASSRPVNVAAEKDRLRKEMEVAENRRDEVEVERIRTRLKELEQMSRLAK 1575
            TVKQMLQ+KKSAS+RP+N+AAEKDRLR+EM+VA ++ DE EVERI+TRL++LE   RL  
Sbjct: 413  TVKQMLQDKKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQM 472

Query: 1576 QIDSKAVRLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSINYYVSKTX 1755
            + D+KA+RLAEMNRKNR ENFKNASEL+P+   LKAGEAGYDPFSRRWTRS NYYVS   
Sbjct: 473  K-DAKAIRLAEMNRKNRVENFKNASELRPLK-DLKAGEAGYDPFSRRWTRSRNYYVSNAG 530

Query: 1756 XXXXXXXXXXXXXSTTVA--NGVMMANGVMNGLXXXXXXXXXXXXXXXXXXXXXXXXGKL 1929
                         + T A  N    A G  +                          GKL
Sbjct: 531  EANGAAEAAGNSDNVTPALENTRTEAGGTSDA----------GMAATAAALEAAAGAGKL 580

Query: 1930 VDTSAPVDQGTESNTLHNFELPISLAALQKFGGPQGAHLGFMARKQRIEAMIGYKVPDND 2109
            VDT+APVD GTESN+LHNFELPISLA LQKFGG  GA  GF+ARKQRIEA +G +VP+ND
Sbjct: 581  VDTNAPVDGGTESNSLHNFELPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPEND 640

Query: 2110 GRRHALTLTVSDYKRRRGLL 2169
            GRRHALTLTVSDYKRRRGLL
Sbjct: 641  GRRHALTLTVSDYKRRRGLL 660


>ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citrus clementina]
            gi|557524836|gb|ESR36142.1| hypothetical protein
            CICLE_v10028000mg [Citrus clementina]
          Length = 643

 Score =  617 bits (1592), Expect = e-174
 Identities = 366/674 (54%), Positives = 424/674 (62%), Gaps = 4/674 (0%)
 Frame = +1

Query: 160  MADLENMLLEAAGRTGSSTRKNQSRSQQKWRRDNHYXXXXXXXXXXXGR--YNKRKPSGS 333
            MADLEN+LLEAAGRT S+ R   S S  K RR+  Y               Y  RKPSGS
Sbjct: 1    MADLENLLLEAAGRTNSAGRNRHSASSSKRRREGSYSGSDSRDDDSDDNRGYGSRKPSGS 60

Query: 334  QVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXXXXLSIGSDLYKDDEDREVLQKLPEL 513
            QVPLKKR DP E+                           G    + D+D     ++ EL
Sbjct: 61   QVPLKKRLDPAERDDDQGSQEEGDYDGGASEHE-------GDSSNESDDDNH--GQMTEL 111

Query: 514  QREMILTERSMXXXXXXXXXXXXXXXXXXXXEQKXXXXXXXXXXXXXXXXXXTDRTTAAK 693
            +REM++ ER                                            DR  AAK
Sbjct: 112  EREMMIFERDDKKVDKNLRDKFRSRREERSTRSTKETPPLPSSRSARLAARSADRA-AAK 170

Query: 694  SDALNELRAKRMRQQDPEGYRRSRDMLGGGSSLSTREDSPPKHKKVMPMPLSPASDSTGN 873
             DALNELRAKR++QQDPE +RR RD   GGS   +R  SP K K   P  LS +S S   
Sbjct: 171  DDALNELRAKRLKQQDPEAHRRLRDASRGGSG--SRVLSPVKRKAFTPAGLSSSSQS--- 225

Query: 874  DSGGQSDGEEDRFPNDMKLVDSVDD-EPSSLKPLNFEDVKEITIRRRKLAKWLMEPFFEE 1050
            +S  +S  +++    D  + DS DD  P S +P  ++D+KEITIRR KLAKW MEPFFEE
Sbjct: 226  ESESRSHSDDEGSTGDGGMADSDDDGAPGSGRP-TYDDIKEITIRRSKLAKWFMEPFFEE 284

Query: 1051 IIVGCFVRVGIGTTRSGKARYRLCIVRNVDASDPDRQYKFEGYTTHKYLNCVWGTESSAA 1230
            +IVGCFVRVGIG +++G   YRLC+VRNVDA++PDR YK E  TT KYLN  WG ESSAA
Sbjct: 285  LIVGCFVRVGIGRSKNGPI-YRLCMVRNVDATEPDRSYKLENRTTCKYLNVTWGNESSAA 343

Query: 1231 RWQMAMISDSEPTLEEFNDWFSEVERTGGRMPIRQEVYEKKEAIQKINTFVYSAATVKQM 1410
            RWQMAM+SDS P  EEF  W  EVER GGRMP +Q+V EKKE+IQKINTFVYSAATVKQM
Sbjct: 344  RWQMAMVSDSPPLEEEFKQWLREVERNGGRMPSKQDVLEKKESIQKINTFVYSAATVKQM 403

Query: 1411 LQEKKSASSRPVNVAAEKDRLRKEMEVAENRRDEVEVERIRTRLKELEQMSRLAKQIDSK 1590
            LQEKKSASSRP+NVAAEKDRLR+E+EVA++R D+V++ERI+ RL+ELE  SR +K  D+K
Sbjct: 404  LQEKKSASSRPLNVAAEKDRLRRELEVAQSRHDDVDMERIKKRLQELE-ASRDSKVKDAK 462

Query: 1591 AVRLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSINYYVSKTXXXXXX 1770
            A+RLAEMNRKNR ENFKNASELK VNTSLKAGEAGYDPFSRRWTRS NYY+SK       
Sbjct: 463  AIRLAEMNRKNRVENFKNASELKRVNTSLKAGEAGYDPFSRRWTRSRNYYISKPGEEV-- 520

Query: 1771 XXXXXXXXSTTVANGVMMANGVMNGL-XXXXXXXXXXXXXXXXXXXXXXXXGKLVDTSAP 1947
                     T  ANG    NGV  G                          GKLVDT+AP
Sbjct: 521  ---------TAEANG--DKNGVPGGANGEEGATGEVGMAATEAALEAAAGAGKLVDTNAP 569

Query: 1948 VDQGTESNTLHNFELPISLAALQKFGGPQGAHLGFMARKQRIEAMIGYKVPDNDGRRHAL 2127
            +D GTESN LH+FEL ISL AL+KFGGPQG   GFMARKQRIEA +G +VP+NDGRRHAL
Sbjct: 570  LDLGTESNMLHDFELDISLNALKKFGGPQGVLAGFMARKQRIEATVGCQVPENDGRRHAL 629

Query: 2128 TLTVSDYKRRRGLL 2169
            TLTV DYKRRRGLL
Sbjct: 630  TLTVGDYKRRRGLL 643


>ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Citrus sinensis] gi|568867309|ref|XP_006486981.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform X2 [Citrus sinensis]
          Length = 643

 Score =  615 bits (1586), Expect = e-173
 Identities = 365/674 (54%), Positives = 423/674 (62%), Gaps = 4/674 (0%)
 Frame = +1

Query: 160  MADLENMLLEAAGRTGSSTRKNQSRSQQKWRRDNHYXXXXXXXXXXXGR--YNKRKPSGS 333
            MADLEN+LLEAAGRT S+ R   S S  K RR+  Y               Y  RKPSGS
Sbjct: 1    MADLENLLLEAAGRTNSAGRNRHSASSSKRRREGSYSGSDSRDDDSDDNRGYGSRKPSGS 60

Query: 334  QVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXXXXLSIGSDLYKDDEDREVLQKLPEL 513
            QVPLKKR DP E+                           G    + D+D     ++ EL
Sbjct: 61   QVPLKKRLDPTERDDDQGSQEEGDYDGGASEHE-------GDSSNESDDDNH--GQMTEL 111

Query: 514  QREMILTERSMXXXXXXXXXXXXXXXXXXXXEQKXXXXXXXXXXXXXXXXXXTDRTTAAK 693
            +REM++ ER                                            DR  AAK
Sbjct: 112  EREMMIFERDDKKVDKNLRDKFRSRREERSTRSTKETPPLPSSRSARLAARSADRA-AAK 170

Query: 694  SDALNELRAKRMRQQDPEGYRRSRDMLGGGSSLSTREDSPPKHKKVMPMPLSPASDSTGN 873
             DALNELRAKR++QQDPE +RR RD   GGS   +R  SP K K   P  LS +S S   
Sbjct: 171  DDALNELRAKRLKQQDPEAHRRLRDASRGGSG--SRVLSPVKRKAFTPAGLSSSSQS--- 225

Query: 874  DSGGQSDGEEDRFPNDMKLVDSVDD-EPSSLKPLNFEDVKEITIRRRKLAKWLMEPFFEE 1050
            +S  +S  +++    D  + DS DD  P S +P  ++D+KEITIRR KLAKW MEPFFEE
Sbjct: 226  ESESRSHSDDEGSTGDGGMADSDDDGAPGSGRP-TYDDIKEITIRRSKLAKWFMEPFFEE 284

Query: 1051 IIVGCFVRVGIGTTRSGKARYRLCIVRNVDASDPDRQYKFEGYTTHKYLNCVWGTESSAA 1230
            +IVGCFVRVGIG +++G   YRLC+VRNVDA++PDR YK E  TT KYLN  WG ESSAA
Sbjct: 285  LIVGCFVRVGIGRSKNGPI-YRLCMVRNVDATEPDRSYKLENRTTCKYLNVTWGNESSAA 343

Query: 1231 RWQMAMISDSEPTLEEFNDWFSEVERTGGRMPIRQEVYEKKEAIQKINTFVYSAATVKQM 1410
            RWQMAM+SDS P  EEF  W  EVER  GRMP +Q+V EKK++IQKINTFVYSAATVKQM
Sbjct: 344  RWQMAMVSDSPPLEEEFKQWLREVERNSGRMPSKQDVLEKKDSIQKINTFVYSAATVKQM 403

Query: 1411 LQEKKSASSRPVNVAAEKDRLRKEMEVAENRRDEVEVERIRTRLKELEQMSRLAKQIDSK 1590
            LQEKKSASSRP+NVAAEKDRLR+E+EVA++R DEV++ERI+ RL+ELE  SR +K  D+K
Sbjct: 404  LQEKKSASSRPLNVAAEKDRLRRELEVAQSRHDEVDMERIKKRLQELE-ASRDSKVKDAK 462

Query: 1591 AVRLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSINYYVSKTXXXXXX 1770
            A+RLAEMNRKNR ENFKNASELK VNTSLKAGEAGYDPFSRRWTRS NYY+SK       
Sbjct: 463  AIRLAEMNRKNRVENFKNASELKRVNTSLKAGEAGYDPFSRRWTRSRNYYISKPGEEV-- 520

Query: 1771 XXXXXXXXSTTVANGVMMANGVMNGL-XXXXXXXXXXXXXXXXXXXXXXXXGKLVDTSAP 1947
                     T  ANG    NGV  G                          GKLVDT+AP
Sbjct: 521  ---------TAEANG--DKNGVPGGANGEEGATGEVGMAATEAALEAAAGAGKLVDTNAP 569

Query: 1948 VDQGTESNTLHNFELPISLAALQKFGGPQGAHLGFMARKQRIEAMIGYKVPDNDGRRHAL 2127
            +D GTESN LH+FEL ISL AL+KFGGPQG   GFMARKQRIEA +G +VP+NDGRRHAL
Sbjct: 570  LDLGTESNMLHDFELDISLNALKKFGGPQGVLAGFMARKQRIEATVGCQVPENDGRRHAL 629

Query: 2128 TLTVSDYKRRRGLL 2169
            TLTV DYKRRRGLL
Sbjct: 630  TLTVGDYKRRRGLL 643


>ref|XP_002316628.2| plus-3 domain-containing family protein [Populus trichocarpa]
            gi|550327599|gb|EEE97240.2| plus-3 domain-containing
            family protein [Populus trichocarpa]
          Length = 664

 Score =  614 bits (1583), Expect = e-173
 Identities = 355/680 (52%), Positives = 426/680 (62%), Gaps = 10/680 (1%)
 Frame = +1

Query: 160  MADLENMLLEAAGRTGSSTRKNQSRSQQKWRRDNHYXXXXXXXXXXXGR-----YNKRKP 324
            MADLEN+LLEAAGRTG S R   S    + R+               G      Y  RKP
Sbjct: 1    MADLENLLLEAAGRTGKSGRNRNSLPPSRRRKQEGSYSDGGSDSRDDGSDDDRGYASRKP 60

Query: 325  SGSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXXXX--LSIGSDLYKDDEDREVLQ 498
            SGSQVPLKKR +  E+                            IG DLYKD++DR+ L 
Sbjct: 61   SGSQVPLKKRLETNERDDEGGSQEEGDYDDGGSDREGESSDGSDIGDDLYKDEDDRQKLA 120

Query: 499  KLPELQREMILTERSMXXXXXXXXXXXXXXXXXXXXEQKXXXXXXXXXXXXXXXXXXTDR 678
            ++ EL RE+IL +R+                      +                   +  
Sbjct: 121  QMSELDRELILADRADKKGDKHLTEKIRSKRDNDKPTRSRKETPPLPSSRGVRSSARSAD 180

Query: 679  TTAAKSDALNELRAKRMRQQDPEGYRRSRDMLGGGSSLSTREDSPPKHKKVMPMPLSPAS 858
              AAK DALNELRAKR++QQDPE +R+ RD   G  S  +R  +  K        LS  S
Sbjct: 181  RAAAKDDALNELRAKRLKQQDPEAHRKLRDASRG--SAGSRGFAQVKKNNFTSARLS--S 236

Query: 859  DSTGNDSGGQSDGEEDRFPNDMKLVDSVDD-EPSSLKPLNFEDVKEITIRRRKLAKWLME 1035
             S+ ++SG +S  E++    D  + DS +D +P S  P  +ED+KEITIRR KLAKW ME
Sbjct: 237  SSSESESGSRSHSEDEGSTGDGGMADSDEDGDPGSRGP-TYEDIKEITIRRTKLAKWFME 295

Query: 1036 PFFEEIIVGCFVRVGIGTTRSGKARYRLCIVRNVDASDPDRQYKFEGYTTHKYLNCVWGT 1215
            P+FEE+I+GCFVRVGIG +++G   YRLC+VRNVDA++PD+ YK E  +T+KYLN  WG 
Sbjct: 296  PWFEELIIGCFVRVGIGRSKTGPV-YRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGA 354

Query: 1216 ESSAARWQMAMISDSEPTLEEFNDWFSEVERTGGRMPIRQEVYEKKEAIQKINTFVYSAA 1395
            +SSAARWQMAM+SDS PT EE+  W  E ER GGR+P +Q++ EKKEAI+K NTFVYSAA
Sbjct: 355  DSSAARWQMAMVSDSAPTEEEYKQWVREAERGGGRLPSKQDILEKKEAIRKSNTFVYSAA 414

Query: 1396 TVKQMLQEKKSASSRPVNVAAEKDRLRKEMEVAENRRDEVEVERIRTRLKELEQMSRLAK 1575
            TVKQMLQEKKSASSRP+NVAAEKDRLR+E+E+A++R DE EVERI  R+ ELE  SR AK
Sbjct: 415  TVKQMLQEKKSASSRPLNVAAEKDRLRRELEIAQSRHDEAEVERIEARILELE-ASRQAK 473

Query: 1576 QIDSKAVRLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSINYYVSKTX 1755
              D+KA+RLAEMNRKNR ENF+NASELKP+NT LKAGEAGYDPFSRRWTRS NYYVS   
Sbjct: 474  VKDAKALRLAEMNRKNRVENFRNASELKPINTGLKAGEAGYDPFSRRWTRSRNYYVSNPA 533

Query: 1756 XXXXXXXXXXXXXSTT--VANGVMMANGVMNGLXXXXXXXXXXXXXXXXXXXXXXXXGKL 1929
                         + T  VA+   +  G M+                          GKL
Sbjct: 534  GGDDAVAASNSEANDTAAVADSDHVVAGAMS---------ESGVAATAAALDAAADAGKL 584

Query: 1930 VDTSAPVDQGTESNTLHNFELPISLAALQKFGGPQGAHLGFMARKQRIEAMIGYKVPDND 2109
            VDTSAPVDQGTESNT+HNFEL ISL ALQKF GPQGAH GFMARKQRIEA +G +V +ND
Sbjct: 585  VDTSAPVDQGTESNTMHNFELEISLIALQKFRGPQGAHAGFMARKQRIEANVGCQVREND 644

Query: 2110 GRRHALTLTVSDYKRRRGLL 2169
            GRRHALTLTV DYKRRRGLL
Sbjct: 645  GRRHALTLTVGDYKRRRGLL 664


>ref|XP_006853567.1| hypothetical protein AMTR_s00032p00242160 [Amborella trichopoda]
            gi|548857220|gb|ERN15034.1| hypothetical protein
            AMTR_s00032p00242160 [Amborella trichopoda]
          Length = 624

 Score =  597 bits (1540), Expect = e-168
 Identities = 357/683 (52%), Positives = 424/683 (62%), Gaps = 12/683 (1%)
 Frame = +1

Query: 157  SMADLENMLLEAAGRTGSSTRKNQSRSQQKWRRDNHYXXXXXXXXXXXGR--------YN 312
            S  DLE++LLEAAGRT +S RK  S++Q K R +  Y                     Y 
Sbjct: 2    SADDLEHLLLEAAGRTSTSGRKKPSQTQPKRRHEGSYSDDGSDPKYESEDDDDSDGPGYP 61

Query: 313  KRKPSGSQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXXXXLSIGSDLYKDDEDREV 492
             RKPSGSQVPLKKRF+  +K                        LS+GSDLYKD+ DRE 
Sbjct: 62   SRKPSGSQVPLKKRFETADKDDMRGKGDRDGGSDDSDSG-----LSVGSDLYKDENDREE 116

Query: 493  LQKLPELQREMILTERSMXXXXXXXXXXXXXXXXXXXXEQKXXXXXXXXXXXXXXXXXXT 672
            L ++ EL+REMILT+R+                      +                   +
Sbjct: 117  LSRMTELEREMILTDRA---DRRDNLMRMKKAERQGDKSRSTGKELMAPPQARGRSSAKS 173

Query: 673  DRTTAAKSDALNELRAKRMRQQDPEGYRRSRDMLGGGSSLSTREDSPPKHKKVMPMPLSP 852
            DR   A  DAL EL AK  R+       R+R         S R+D      K      SP
Sbjct: 174  DRM--ANKDALTELLAKMQRKS------RNR---------SERQDLMVVRNKAAAAA-SP 215

Query: 853  ASDSTGNDS-GGQSDGEEDRFPNDMKLVDSVDDE--PSSLKPLNFEDVKEITIRRRKLAK 1023
             SDS  +      SDG E      ++L +S +DE   S  +   FED+K ITIRR +LAK
Sbjct: 216  VSDSPPSSGVRSSSDGREV----SVELGESDEDEGPTSGSEHPTFEDIKGITIRRSRLAK 271

Query: 1024 WLMEPFFEEIIVGCFVRVGIGTTRSGKARYRLCIVRNVDASDPDRQYKFEGYTTHKYLNC 1203
            W +EPFFEE IVGCFVRVGIGT+RSG++ YRLC+VRNVDASDPDRQYKFE  TTHKYLNC
Sbjct: 272  WFLEPFFEEAIVGCFVRVGIGTSRSGQSIYRLCMVRNVDASDPDRQYKFENRTTHKYLNC 331

Query: 1204 VWGTESSAARWQMAMISDSEPTLEEFNDWFSEVERTGGRMPIRQEVYEKKEAIQKI-NTF 1380
            VWG+E+SAARWQMA ISDS P  +EF +W  EVER GGRMP +Q+V +K EAIQ++ ++F
Sbjct: 332  VWGSEASAARWQMARISDSAPLEKEFLEWVREVERGGGRMPTKQDVIDKGEAIQRLSSSF 391

Query: 1381 VYSAATVKQMLQEKKSASSRPVNVAAEKDRLRKEMEVAENRRDEVEVERIRTRLKELEQM 1560
            VYSAATVKQMLQEKKSAS+RP N+AAEKDRLRKEME+AE+R D  E ER+R RL+ELE +
Sbjct: 392  VYSAATVKQMLQEKKSASTRPSNIAAEKDRLRKEMELAESRLDHAEAERVRARLQELENL 451

Query: 1561 SRLAKQIDSKAVRLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSINYY 1740
            S+ +K+ D+KAV LAEMNR+NRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRS NYY
Sbjct: 452  SQQSKKKDAKAVMLAEMNRRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYY 511

Query: 1741 VSKTXXXXXXXXXXXXXXSTTVANGVMMANGVMNGLXXXXXXXXXXXXXXXXXXXXXXXX 1920
            VSK               +T  A                                     
Sbjct: 512  VSKPEGGGEVVKEEAETAATKAA------------------------------LEAAADA 541

Query: 1921 GKLVDTSAPVDQGTESNTLHNFELPISLAALQKFGGPQGAHLGFMARKQRIEAMIGYKVP 2100
            GKLVDT APVD+GTES++LH+FELPISLA LQ+FGGPQGA L FMARKQRIEA IG +VP
Sbjct: 542  GKLVDTKAPVDEGTESHSLHDFELPISLAGLQRFGGPQGAQLAFMARKQRIEATIGVRVP 601

Query: 2101 DNDGRRHALTLTVSDYKRRRGLL 2169
            +NDGRRH+LTL+VSDYKRRRGL+
Sbjct: 602  ENDGRRHSLTLSVSDYKRRRGLV 624


>ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform 1
            [Solanum lycopersicum] gi|460374083|ref|XP_004232841.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform 2 [Solanum lycopersicum]
          Length = 645

 Score =  591 bits (1523), Expect = e-166
 Identities = 352/673 (52%), Positives = 416/673 (61%), Gaps = 5/673 (0%)
 Frame = +1

Query: 166  DLENMLLEAAGRTGSSTRKNQSRSQQKWRRDNHYXXXXXXXXXXX--GR-YNKRKPSGSQ 336
            +L ++LLEAAGRT +  R     S ++  + ++              GR Y+ RK SGSQ
Sbjct: 4    ELTDLLLEAAGRTNTGGRNRPPHSSKRHHKSSYSDDGSDSRDDDSDDGRGYSGRKLSGSQ 63

Query: 337  VPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXXXXLSIGSDLYKDDEDREVLQKLPELQ 516
            VPLKKR DP E+                         SIGSDLYKDD+DR+ L ++ EL+
Sbjct: 64   VPLKKRLDPQERDDDHSSHGEGNDGDGYGNESDDD--SIGSDLYKDDDDRQKLAQMTELE 121

Query: 517  REMILTERSMXXXXXXXXXXXXXXXXXXXXEQKXXXXXXXXXXXXXXXXXXTDRTTAAKS 696
            REMILT+R+                     +                     DR      
Sbjct: 122  REMILTDRAAKKSDRSLHDKMIKDRAQPRKQSSPPSHSRGMRSSTRALDRAADR-----D 176

Query: 697  DALNELRAKRMRQQ-DPEGYRRSRDMLGGGSSLSTREDSPPKHKKVMPMPLSPASDSTGN 873
            DALNE+RAKR RQQ DPEG  + RD    GS   +R  SP K +      L  +S + G 
Sbjct: 177  DALNEIRAKRARQQQDPEGQFKLRDAARKGSG--SRGYSPIKRRSFTAASLG-SSPTRGE 233

Query: 874  DSGGQSDGEEDRFPNDMKLVDSVDDEPSSLKPL-NFEDVKEITIRRRKLAKWLMEPFFEE 1050
                 ++G+      D  + DS DD+ S    L  FED+KEI+IRR KLAKW MEPFF+E
Sbjct: 234  SDSHSNEGDSSA---DDGMDDSDDDKSSPESQLPTFEDIKEISIRRSKLAKWFMEPFFDE 290

Query: 1051 IIVGCFVRVGIGTTRSGKARYRLCIVRNVDASDPDRQYKFEGYTTHKYLNCVWGTESSAA 1230
            +IVGCFVRVGIG +RSG   YRLC+VRNVDASDP+RQYK E  TT K+LN VWG E+SAA
Sbjct: 291  LIVGCFVRVGIGRSRSGPI-YRLCVVRNVDASDPNRQYKLENKTTSKFLNVVWGNENSAA 349

Query: 1231 RWQMAMISDSEPTLEEFNDWFSEVERTGGRMPIRQEVYEKKEAIQKINTFVYSAATVKQM 1410
            RWQMAMISDS P  +EF+ W  EVER+GGRMP +Q+V EKKEAIQK NTFVYSA TVKQM
Sbjct: 350  RWQMAMISDSPPLRDEFDQWVREVERSGGRMPSKQDVLEKKEAIQKSNTFVYSADTVKQM 409

Query: 1411 LQEKKSASSRPVNVAAEKDRLRKEMEVAENRRDEVEVERIRTRLKELEQMSRLAKQIDSK 1590
            LQ+KKSA+ RP+NVAAEKDRLR++MEVA+ + DE EVERI+ RL+ELE  SR  ++ D K
Sbjct: 410  LQQKKSATWRPLNVAAEKDRLRRDMEVAKMKNDEAEVERIKARLQELED-SRKVQEKDDK 468

Query: 1591 AVRLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSINYYVSKTXXXXXX 1770
            A RLAEMNRKNR ENFKNASEL+PVN  LKAGEAGYDPFSRRWTRS NY+          
Sbjct: 469  ARRLAEMNRKNRVENFKNASELRPVNQLLKAGEAGYDPFSRRWTRSTNYFAKGASNGEAA 528

Query: 1771 XXXXXXXXSTTVANGVMMANGVMNGLXXXXXXXXXXXXXXXXXXXXXXXXGKLVDTSAPV 1950
                        A G   A+G M                           GKLVDT+APV
Sbjct: 529  AAAALAAEDNNGAGGT--ADGGM--------------AATAAALQAAAGAGKLVDTNAPV 572

Query: 1951 DQGTESNTLHNFELPISLAALQKFGGPQGAHLGFMARKQRIEAMIGYKVPDNDGRRHALT 2130
            DQGTESNTLH+F+LPISLA LQKFGG QG   GFMARKQRIEA +G  VP+NDGRRHALT
Sbjct: 573  DQGTESNTLHDFDLPISLAVLQKFGGSQGGQAGFMARKQRIEATVGCSVPENDGRRHALT 632

Query: 2131 LTVSDYKRRRGLL 2169
            L+VSDYKRRRGLL
Sbjct: 633  LSVSDYKRRRGLL 645


>ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutrema salsugineum]
            gi|557088572|gb|ESQ29352.1| hypothetical protein
            EUTSA_v10023338mg [Eutrema salsugineum]
          Length = 644

 Score =  588 bits (1516), Expect = e-165
 Identities = 340/677 (50%), Positives = 409/677 (60%), Gaps = 7/677 (1%)
 Frame = +1

Query: 160  MADLENMLLEAAGRTGSSTRKNQSRSQQKWRRDNHYXXXXXXXXXXXGR---YNKRKPSG 330
            M DL+++LLEAAGRT +  R   S      RR+  Y                Y  RKPSG
Sbjct: 1    MVDLDDLLLEAAGRTNAPGRSRHSHPPSSRRREGSYSDGGSDSRDDSDEERGYASRKPSG 60

Query: 331  SQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXXXXLSIGSDLYKDDEDREVLQKLPE 510
            SQVPLKKR +   +                           G DLYK++EDR+ L  + E
Sbjct: 61   SQVPLKKRLEAEREDRAARDEAGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAGMTE 120

Query: 511  LQREMILTERSMXXXXXXXXXXXXXXXXXXXXEQKXXXXXXXXXXXXXXXXXXTDRTTAA 690
             QREMIL ER+                                          +    AA
Sbjct: 121  FQREMILAERADKKGDKNFTEKLRSKREKEKTPVSKKETQPLPASRGVRSSARSADRAAA 180

Query: 691  KSDALNELRAKRMRQQDPEGYRRSRDMLGGGSSLSTREDSPPKHKKVMPMPLSPASDSTG 870
            K DALNELRAKRM+QQ+P   R+ RD   GGS   +R+ S  K K +    LS +S S  
Sbjct: 181  KDDALNELRAKRMKQQEPASLRKLRDASKGGSG--SRDFSSMKRKPLASSNLSNSSQSD- 237

Query: 871  NDSGGQSDGEEDRFPNDMKLVDSVDDEPSSLKPLNFEDVKEITIRRRKLAKWLMEPFFEE 1050
            +DS  QSD E     ++  +VDS DD+ S +    FED+K+ITIRR KLAKWLMEPFFEE
Sbjct: 238  SDSRSQSDDEG----SNGGMVDS-DDDRSDVP--TFEDIKDITIRRSKLAKWLMEPFFEE 290

Query: 1051 IIVGCFVRVGIGTTRSGKARYRLCIVRNVDASDPDRQYKFEGYTTHKYLNCVWGTESSAA 1230
            +IVGCFVRVGIG +++G   YRLC+V+NVDA+DPD+ YK E  TTHKYLNC+WG ESSAA
Sbjct: 291  LIVGCFVRVGIGRSKNGPI-YRLCMVKNVDATDPDKTYKLENKTTHKYLNCIWGHESSAA 349

Query: 1231 RWQMAMISDSEPTLEEFNDWFSEVERTGGRMPIRQEVYEKKEAIQKINTFVYSAATVKQM 1410
            RWQMAMISD  P  EE+  W  EVERT GRMP +Q++ EKKEAI++IN+FVYSA TVKQM
Sbjct: 350  RWQMAMISDGYPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIKRINSFVYSAETVKQM 409

Query: 1411 LQEKKSASSRPVNVAAEKDRLRKEMEVAENRRDEVEVERIRTRLKELEQMSRLAKQIDSK 1590
            LQEKKSAS RP+N+AAEKDRLRKE+EVA+ + DE  VERI+ ++K+LE  SR  K++D K
Sbjct: 410  LQEKKSASVRPMNIAAEKDRLRKELEVAQIKNDEAGVERIKAKIKQLE-ASREKKEVDKK 468

Query: 1591 AVRLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSINYYVSKTXXXXXX 1770
            A++LAEMN+KNRAENFKNASE+K +  SLKAGEAGYDPFSRRWTRS NYY  K       
Sbjct: 469  ALKLAEMNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKRKEGGDT 528

Query: 1771 XXXXXXXXSTTVA----NGVMMANGVMNGLXXXXXXXXXXXXXXXXXXXXXXXXGKLVDT 1938
                     T  A    NGV      +                           GKL+DT
Sbjct: 529  EATAAAAVETNGAAAGENGVEATEAALEA---------------------AADAGKLIDT 567

Query: 1939 SAPVDQGTESNTLHNFELPISLAALQKFGGPQGAHLGFMARKQRIEAMIGYKVPDNDGRR 2118
             AP+ QG E N LHNFELP+SL ALQK+GGPQG    FMARKQ  EA +G +V +NDG+R
Sbjct: 568  RAPIGQGAEHNLLHNFELPLSLTALQKYGGPQGVQKAFMARKQVTEATVGCRVAENDGKR 627

Query: 2119 HALTLTVSDYKRRRGLL 2169
            H LTLTVSDYKRRRGLL
Sbjct: 628  HGLTLTVSDYKRRRGLL 644


>ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp. lyrata]
            gi|297333952|gb|EFH64370.1| At1g61040/T7P1_17
            [Arabidopsis lyrata subsp. lyrata]
          Length = 643

 Score =  588 bits (1515), Expect = e-165
 Identities = 344/673 (51%), Positives = 410/673 (60%), Gaps = 3/673 (0%)
 Frame = +1

Query: 160  MADLENMLLEAAGRTGSSTRKNQSRSQQKWRRDNHYXXXXXXXXXXXGR---YNKRKPSG 330
            M DLEN+LLEAAGRT S+ R     S +  RR+  Y                Y  RKPSG
Sbjct: 1    MGDLENLLLEAAGRTNSAGRSRHPPSSR--RREGSYSDGSSDSRDDSDEDRGYASRKPSG 58

Query: 331  SQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXXXXLSIGSDLYKDDEDREVLQKLPE 510
            SQVPLKKR +   +                           G DLYK++EDR+ L  + E
Sbjct: 59   SQVPLKKRLEAEREDRAARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAGMTE 118

Query: 511  LQREMILTERSMXXXXXXXXXXXXXXXXXXXXEQKXXXXXXXXXXXXXXXXXXTDRTTAA 690
             QREMIL ER+                                          +    AA
Sbjct: 119  FQREMILAERADKKGDKNFTEKLRSKRENEKTPVSKKETQPLPASRGVRSSARSADRAAA 178

Query: 691  KSDALNELRAKRMRQQDPEGYRRSRDMLGGGSSLSTREDSPPKHKKVMPMPLSPASDSTG 870
            K DALNELRAKRM+QQDP   R+ RD   GGS   +R+ S  K K +    LS +S S  
Sbjct: 179  KDDALNELRAKRMKQQDPAALRKLRDASKGGSG--SRDFSSMKRKPLASSNLSSSSQSD- 235

Query: 871  NDSGGQSDGEEDRFPNDMKLVDSVDDEPSSLKPLNFEDVKEITIRRRKLAKWLMEPFFEE 1050
            +DS  QSD E     ++  ++DS DD+ S +    FEDVKEITIRR KLAKWLMEPFFEE
Sbjct: 236  SDSRSQSDDEG----SNAGMLDS-DDDRSDVP--TFEDVKEITIRRSKLAKWLMEPFFEE 288

Query: 1051 IIVGCFVRVGIGTTRSGKARYRLCIVRNVDASDPDRQYKFEGYTTHKYLNCVWGTESSAA 1230
            +IVGCFVRVGIG ++SG   YRLC V+NVDA+DPD+ YK E  TTHKYLN VWG E+SAA
Sbjct: 289  LIVGCFVRVGIGRSKSGPI-YRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWGNETSAA 347

Query: 1231 RWQMAMISDSEPTLEEFNDWFSEVERTGGRMPIRQEVYEKKEAIQKINTFVYSAATVKQM 1410
            RWQMAMISD  P  EE+  W  EVERT GRMP +Q++ EKKEAIQ+IN+FVYSA TVKQM
Sbjct: 348  RWQMAMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRINSFVYSAETVKQM 407

Query: 1411 LQEKKSASSRPVNVAAEKDRLRKEMEVAENRRDEVEVERIRTRLKELEQMSRLAKQIDSK 1590
            LQEKKSAS RP+NVAAEKDRLRKE+E+A+++ DE  VERI+T++K+L+  SR  K +D K
Sbjct: 408  LQEKKSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKTKIKQLD-ASRNKKGVDKK 466

Query: 1591 AVRLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSINYYVSKTXXXXXX 1770
            A++LAEMN+KNRAENFKNASE+K ++ SLKAGEAGYDPFSRRWTRS NYY  K       
Sbjct: 467  ALKLAEMNKKNRAENFKNASEVKSISASLKAGEAGYDPFSRRWTRSSNYYNGKN------ 520

Query: 1771 XXXXXXXXSTTVANGVMMANGVMNGLXXXXXXXXXXXXXXXXXXXXXXXXGKLVDTSAPV 1950
                    + T     +  NG   G                         GKL+DT AP+
Sbjct: 521  -KGKDGEENETAVAAAVETNGADVG---------AGVEATEAALEAAAEAGKLIDTRAPI 570

Query: 1951 DQGTESNTLHNFELPISLAALQKFGGPQGAHLGFMARKQRIEAMIGYKVPDNDGRRHALT 2130
             QG E N LHNFEL +SL ALQK+GGPQG    FMARKQ  EA +G +V +NDG+RH LT
Sbjct: 571  GQGAEHNQLHNFELSLSLTALQKYGGPQGVQKAFMARKQVTEATVGCRVAENDGKRHGLT 630

Query: 2131 LTVSDYKRRRGLL 2169
            LTVSDYKRRRGLL
Sbjct: 631  LTVSDYKRRRGLL 643


>ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Solanum
            tuberosum]
          Length = 652

 Score =  587 bits (1512), Expect = e-165
 Identities = 349/677 (51%), Positives = 420/677 (62%), Gaps = 9/677 (1%)
 Frame = +1

Query: 166  DLENMLLEAAGRTGSSTRKNQSRSQQKWRRDNHYXXXXXXXXXXX--GR-YNKRKPSGSQ 336
            +L ++LLEAAGRT +  R    +S ++  + ++              GR Y+ RK SGSQ
Sbjct: 4    ELTDLLLEAAGRTNTGGRNRPPQSSRRHHKSSYSDDGSDSRDDDSDDGRGYSGRKLSGSQ 63

Query: 337  VPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXXXXLSIGSDLYKDDEDREVLQKLPELQ 516
            VPLKKR DP E+                         SIGSDLYKDD+DR+ L ++ EL+
Sbjct: 64   VPLKKRLDPQERDDDHSSHGEGNDGDGYGNESDDD--SIGSDLYKDDDDRQKLAQMTELE 121

Query: 517  REMILTERSMXXXXXXXXXXXXXXXXXXXXEQKXXXXXXXXXXXXXXXXXXTDRTTAAKS 696
            REMILT+R+                     +                     DR      
Sbjct: 122  REMILTDRAAKKSDRSLHDKMIKDRAQPRKQSSPPSHSRGMRSSTRALDRAADR-----D 176

Query: 697  DALNELRAKRMRQQ-DPEGYRRSRDMLGGGSSLSTREDSPPKHKKVMPMPLSPASDSTGN 873
            DALNE+RAKR RQQ DPEG  + RD    GS    R  SP K +      L  +S + G 
Sbjct: 177  DALNEIRAKRARQQQDPEGQFKLRDAARKGSG--GRGYSPIKRRSFTAATLG-SSPTRGE 233

Query: 874  DSGGQSDGEEDRFPNDMKLVDSVDDEPSSLKPL-NFEDVKEITIRRRKLAKWLMEPFFEE 1050
                 ++G+      D  + DS DD+ S    L  FED+KEI+IRR KLAKW MEPFF+E
Sbjct: 234  SDSHSNEGDSSA---DDGMDDSDDDKSSPESQLPTFEDIKEISIRRSKLAKWFMEPFFDE 290

Query: 1051 IIVGCFVRVGIGTTRSGKARYRLCIVRNVDASDPDRQYKFEGYTTHKYLNCVWGTESSAA 1230
            +IVGCFVRVGIG +RSG   YRLC+VRNVD+SDP+RQYK E  TT K+LN VWG E+SAA
Sbjct: 291  LIVGCFVRVGIGRSRSGPI-YRLCVVRNVDSSDPNRQYKLENKTTSKFLNVVWGNENSAA 349

Query: 1231 RWQMAMISDSEPTLEEFNDWFSEVERTGGRMPIRQEVYEKKEAIQKINTFVYSAATVKQM 1410
            RWQMAM+SDS P  +EF+ W  EVER+GGRMP +Q+V EKKEAIQK NTFVYSA TVKQM
Sbjct: 350  RWQMAMVSDSPPLRDEFDQWVREVERSGGRMPSKQDVLEKKEAIQKSNTFVYSADTVKQM 409

Query: 1411 LQEKKSASSRPVNVAAEKDRLRKEMEVAENRRDEVEVERIRTRLKELEQMSRLAKQIDSK 1590
            LQ+KKSA+ RP+NVAAEKDRLR++MEVA+ + DE EVERI+ RL+EL+  SR  ++ D K
Sbjct: 410  LQQKKSATWRPLNVAAEKDRLRRDMEVAKMKNDEAEVERIKARLQELDD-SRKVQEKDDK 468

Query: 1591 AVRLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSINYYVSKTXXXXXX 1770
            A RLAEMNRKNR ENFKNASEL+PVN  LKAG+AGYDPFSRRWTRS NY+          
Sbjct: 469  ARRLAEMNRKNRVENFKNASELRPVNQLLKAGQAGYDPFSRRWTRSTNYFAKGANEEAEG 528

Query: 1771 XXXXXXXXSTTVA----NGVMMANGVMNGLXXXXXXXXXXXXXXXXXXXXXXXXGKLVDT 1938
                    +  +A    NG   A+G  +G                         GKLVDT
Sbjct: 529  ASNGEVAAAAALAAEDNNG---ASGTADG----------GMAATAAALQAAAGAGKLVDT 575

Query: 1939 SAPVDQGTESNTLHNFELPISLAALQKFGGPQGAHLGFMARKQRIEAMIGYKVPDNDGRR 2118
            +APVDQGTESNTLH+F+LPISLA LQKFGG QG   GFMARKQRIEA +G  VP+NDGRR
Sbjct: 576  NAPVDQGTESNTLHDFDLPISLAVLQKFGGSQGGQAGFMARKQRIEATVGCSVPENDGRR 635

Query: 2119 HALTLTVSDYKRRRGLL 2169
            HALTL+VSDYKRRRGLL
Sbjct: 636  HALTLSVSDYKRRRGLL 652


>ref|XP_006300844.1| hypothetical protein CARUB_v10019938mg [Capsella rubella]
            gi|482569554|gb|EOA33742.1| hypothetical protein
            CARUB_v10019938mg [Capsella rubella]
          Length = 644

 Score =  585 bits (1508), Expect = e-164
 Identities = 338/673 (50%), Positives = 403/673 (59%), Gaps = 3/673 (0%)
 Frame = +1

Query: 160  MADLENMLLEAAGRTGSSTRKNQSRSQQKWRRDNHYXXXXXXXXXXXGR---YNKRKPSG 330
            M DLEN+LLEAAGRT  + +   S      RR+  Y                +  RKPSG
Sbjct: 1    MGDLENLLLEAAGRTNPAGKSRHSHPPSSRRREGSYSDGSSDSRDDSDDDRGFASRKPSG 60

Query: 331  SQVPLKKRFDPPEKXXXXXXXXXXXXXXXXXXXXXXXXLSIGSDLYKDDEDREVLQKLPE 510
            SQVPLKKR +   +                           G DLYK++EDR+ L  + E
Sbjct: 61   SQVPLKKRLEAEREDRAARNESGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAGMTE 120

Query: 511  LQREMILTERSMXXXXXXXXXXXXXXXXXXXXEQKXXXXXXXXXXXXXXXXXXTDRTTAA 690
             QREMIL ER+                                          +    AA
Sbjct: 121  FQREMILAERADKKGDKNFTEKLRSKRENEKTPVSKKETQPLPASRGVRSSARSADRAAA 180

Query: 691  KSDALNELRAKRMRQQDPEGYRRSRDMLGGGSSLSTREDSPPKHKKVMPMPLSPASDSTG 870
            K DALNELRAKRM+QQDP   R+ RD   GGS   +R+ S  K K +    LS +S S  
Sbjct: 181  KDDALNELRAKRMKQQDPAALRKLRDASKGGSG--SRDFSSLKRKPLASSNLSNSSQSD- 237

Query: 871  NDSGGQSDGEEDRFPNDMKLVDSVDDEPSSLKPLNFEDVKEITIRRRKLAKWLMEPFFEE 1050
            +DS  QSD E      D       DD+ S +    FED+KEITIRR KLAKWLMEPFFEE
Sbjct: 238  SDSRSQSDDEGSNAGLDS------DDDRSDMP--TFEDIKEITIRRSKLAKWLMEPFFEE 289

Query: 1051 IIVGCFVRVGIGTTRSGKARYRLCIVRNVDASDPDRQYKFEGYTTHKYLNCVWGTESSAA 1230
            +IVGCFVRVGIG ++SG   YRLC+VRNVDA+DPD+ YK E  TTHKYLN +WG E+SAA
Sbjct: 290  LIVGCFVRVGIGRSKSGPI-YRLCMVRNVDATDPDKTYKLENKTTHKYLNVIWGNETSAA 348

Query: 1231 RWQMAMISDSEPTLEEFNDWFSEVERTGGRMPIRQEVYEKKEAIQKINTFVYSAATVKQM 1410
            RWQMAMISD  P  EE+  W  EVERT GRMP +Q++ EKKEAI++IN+F+YSA TVKQM
Sbjct: 349  RWQMAMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIKRINSFIYSAETVKQM 408

Query: 1411 LQEKKSASSRPVNVAAEKDRLRKEMEVAENRRDEVEVERIRTRLKELEQMSRLAKQIDSK 1590
            LQEKKSAS RP+NVAAEKDRLRKE+E+A+++ DE  VERI+T++K+L+  SR  K +D K
Sbjct: 409  LQEKKSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKTKIKQLD-ASRNKKGVDKK 467

Query: 1591 AVRLAEMNRKNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSINYYVSKTXXXXXX 1770
            A++LAEMN+KNRAENFKNASE+K +  SLK GEAGYDPFSRRWTRS NYY  K       
Sbjct: 468  ALKLAEMNKKNRAENFKNASEVKSITASLKVGEAGYDPFSRRWTRSSNYYNGKN-KGKEG 526

Query: 1771 XXXXXXXXSTTVANGVMMANGVMNGLXXXXXXXXXXXXXXXXXXXXXXXXGKLVDTSAPV 1950
                    +    NGV    GV                            GKL+DT AP+
Sbjct: 527  AENEAAVAAAVETNGVDAGAGV---------------EATEAALEAAAEAGKLIDTRAPI 571

Query: 1951 DQGTESNTLHNFELPISLAALQKFGGPQGAHLGFMARKQRIEAMIGYKVPDNDGRRHALT 2130
             QG E N LHNFEL +SLAALQK+GGPQG    FMARKQ  EA +G +V +NDG+RH LT
Sbjct: 572  GQGAEHNQLHNFELSVSLAALQKYGGPQGVQKAFMARKQVTEATVGCRVAENDGKRHGLT 631

Query: 2131 LTVSDYKRRRGLL 2169
            LTVSDYKRRRGLL
Sbjct: 632  LTVSDYKRRRGLL 644