BLASTX nr result
ID: Stemona21_contig00009939
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Stemona21_contig00009939
(4127 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFW59623.1| putative DNA-directed RNA polymerase subunit fami... 1587 0.0
ref|NP_001177299.1| required to maintain repression7 [Zea mays] ... 1587 0.0
ref|XP_002468227.1| hypothetical protein SORBIDRAFT_01g042100 [S... 1584 0.0
gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA p... 1583 0.0
ref|NP_001054041.1| Os04g0641000 [Oryza sativa Japonica Group] g... 1581 0.0
emb|CAE05960.2| OSJNBa0063C18.1 [Oryza sativa Japonica Group] 1581 0.0
ref|XP_002447199.1| hypothetical protein SORBIDRAFT_06g030300 [S... 1580 0.0
ref|XP_006652896.1| PREDICTED: DNA-directed RNA polymerases IV a... 1575 0.0
gb|AAY45706.1| RNA polymerase IV second largest subunit [Zea mays] 1568 0.0
emb|CAD41847.2| OSJNBb0079B02.6 [Oryza sativa Japonica Group] 1566 0.0
emb|CAJ86030.1| B0414F07.4 [Oryza sativa Indica Group] 1564 0.0
ref|XP_003577435.1| PREDICTED: DNA-directed RNA polymerase D sub... 1556 0.0
ref|XP_003564776.1| PREDICTED: DNA-directed RNA polymerase D sub... 1556 0.0
gb|EMS61833.1| DNA-directed RNA polymerase D subunit 2a [Triticu... 1545 0.0
ref|XP_003580654.1| PREDICTED: DNA-directed RNA polymerase D sub... 1536 0.0
gb|EMS59628.1| DNA-directed RNA polymerase D subunit 2a [Triticu... 1511 0.0
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub... 1477 0.0
ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV a... 1476 0.0
ref|XP_003571431.1| PREDICTED: DNA-directed RNA polymerase D sub... 1474 0.0
ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D sub... 1471 0.0
>gb|AFW59623.1| putative DNA-directed RNA polymerase subunit family protein [Zea
mays]
Length = 2163
Score = 1587 bits (4109), Expect = 0.0
Identities = 776/1201 (64%), Positives = 937/1201 (78%), Gaps = 5/1201 (0%)
Frame = +1
Query: 253 MEGEQ-SPNGSDADMEFTMEDFVNEKDKGESMNLDSPSKEMDN--LGANVGGLEKFCKEA 423
+EG + SP +D D + + +N S S+ N + +V LEKFCKEA
Sbjct: 969 IEGNRDSPIDTDEGQPSMDVDIKGKSSLNDDVNGKSSSEPFSNPPINMSVESLEKFCKEA 1028
Query: 424 ARAFFTEQGFISHQINSYNDFIDHGLQDLFDSIGEVTVDPDYDPSKKRGFEWRYASVTFG 603
+R+FF E G ISHQINSYN+F+ HGLQ+LFDS+GEV V+P YDPSKK W++A + FG
Sbjct: 1029 SRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPGYDPSKKGSGSWKHAIIKFG 1088
Query: 604 KVRVEKPTFWTGGADVAEECVKLLPRHARLQHMTYSAQMKVEVRVQVYIQEKSDKAKTGK 783
+V++EKP FWTG +V+ V P HARLQ+MTY+++++VEV +QVY EKSDK+KTG
Sbjct: 1089 RVKLEKPVFWTGKDEVS---VDFKPWHARLQNMTYASRLRVEVTIQVYSLEKSDKSKTGN 1145
Query: 784 DSYIQKRILSDEKREIIIGRIPVMVKSNLCWLHTLDKSDCFFDFGGYFLVKGAEKAFIAQ 963
D ++QKR +E I IG +PVMVKSNLC LH+L +S+C FD GGYFLVKG EK FIAQ
Sbjct: 1146 DGFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLKESECLFDAGGYFLVKGMEKVFIAQ 1205
Query: 964 EERCTTRLWVAEKPSWTITYQSEMRRRGNFNVKLVESS-AEGFSGEKVVNGSFLFAQMPV 1140
E RC RLW++++P WTI++ SEM+RR + +KLVES+ +E FSG K+++ SFL+A MPV
Sbjct: 1206 ELRCLRRLWISDRPCWTISFMSEMKRRRIY-IKLVESTRSEDFSGSKIISISFLYATMPV 1264
Query: 1141 WIMFFALGASSDKEVFQMIDLEGCQSNMVNILRATIRDAEGKCCDFRKGEKAKEFVYEQL 1320
W++FFALG SSDKE F +ID++ C ++++N + ATI++++ C FRK +KA+++V E +
Sbjct: 1265 WLLFFALGISSDKEAFDVIDMQDCDASVINTISATIKESDELCGGFRKSDKARQYVDELV 1324
Query: 1321 KSTKFPPSESLDDCINAFLFPKVVGHKQKAFFLGYMVKCLLLACFGKRKCDNKDDFXXXX 1500
KS+KFPP ES DD I FLFP + G++ KA FLGYMVKCLL+A GKRKCDNKDDF
Sbjct: 1325 KSSKFPPVESFDDYIAKFLFPGISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKR 1384
Query: 1501 XXXXXXXXXXXMWSHVRHAQRSMVRAMQRDLRGDRDLQFIERYLDASIITNGLNRAFSTG 1680
+ +H+R A+R MV+A+QRDL DR+LQ +ERY+DASI+TNGLNRAFSTG
Sbjct: 1385 LDLPGELLGRELRAHLRQAERRMVKAIQRDLNSDRELQDLERYIDASIVTNGLNRAFSTG 1444
Query: 1681 SWCHSYKRTERCSGVVATRRTTNPLQMISDLRKTRWRVSYAGKAGDARYPNPSFWGKLCF 1860
SWCH YKR ERCSG+VAT R TNPLQM+SDLRKTR RV+YAGKAGDARYPNPS+WGKLCF
Sbjct: 1445 SWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGDARYPNPSYWGKLCF 1504
Query: 1861 LSTTDGENCGFVKNLAATAIVSSKFTAPGLDKLVSCGMXXXXXXXXXXXXXXXXVFLDGC 2040
+ST DGENCG VKNLA T+IVSSK P ++ +SCGM +FL+G
Sbjct: 1505 MSTPDGENCGLVKNLAVTSIVSSKVVQPLIESFISCGMNKLNDIPTEHIQRMDKIFLNGN 1564
Query: 2041 WVGVCEDADSFVTNLREMRRKKQIHSQVEIKKDKHQKEVRIFCDVGRILRPLLIVENLKK 2220
W+G C D+ SFV LR MRR I QVEIK+DKH KEVR+F D GRILRPLL+VENL K
Sbjct: 1565 WLGSCSDSASFVFRLRCMRRSSLIDPQVEIKRDKHYKEVRLFSDAGRILRPLLVVENLNK 1624
Query: 2221 ISNLKGGIRSFQSLMDXXXXXXXXXXXXXDCRTAWGIRYLFEKKDNQPIVNYTHCEXXXX 2400
I KG SFQ LM D + AWGIR+LFE + I +YTHCE
Sbjct: 1625 IRKPKGRSFSFQELMQQEIIEFIGVEEEEDIQCAWGIRHLFESEG--AISSYTHCELDPS 1682
Query: 2401 XXXXXXCGIIPFANHNLARRVLYQAEKHSQQAIGFSTTNPNIRVDTLTHQLYYPQKPLCR 2580
CGIIPFANHN ARRVLYQ+EKHSQQAIG+ST+NP IRVDTL+HQLYYPQ+PL +
Sbjct: 1683 FILGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTSNPRIRVDTLSHQLYYPQRPLFK 1742
Query: 2581 TVLAECLGEADLS-LGRSEGIARPEYFNGQCAIVAVNVHLGYNQEDSIVINRSSLERGMF 2757
TV+A+CLG +D + GR + RPEYFNGQ AIVAVNVH G+NQEDS+V+NR+SLERGMF
Sbjct: 1743 TVIADCLGRSDCTTFGRKDDFTRPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMF 1802
Query: 2758 RSEHLRSYKADIENVEITKFKKLKDKVEFGKMQSKKGRVDSLDDDGFPYIGANLHSGDIV 2937
R+EHLRSYKAD+EN + TK KLK+K++FGK +SK+GRVD+LDDDG PYIGA+L + DIV
Sbjct: 1803 RTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYIGASLQTNDIV 1862
Query: 2938 IGKVAESGEDYGTKLKHTEKGMVHKVVLSANDEGKSFAAVTLREIRSPCVGDKFSSMHGQ 3117
IGKV+ESGED+ KLKHTEKGMV KV+LSANDEGK+FA VTLR++R+PC+GDKFSSMHGQ
Sbjct: 1863 IGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQ 1922
Query: 3118 KGVIGLLESQENFPFTRQGIVPDIVINPHAFPTRQTPGQLLEAALAKGIACGGTTKYATP 3297
KGV+G LESQENFPFT GIVPDIVINPHAFPTRQTPGQLLEAAL KGIAC GT +YATP
Sbjct: 1923 KGVVGFLESQENFPFTHDGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACKGTMRYATP 1982
Query: 3298 FTTPSIDVITEQLHRAGYQRWGSERFLSGRTGEMMKSLIFIGPTFYQRLTHMAEDKVKFR 3477
FTT S+DVI EQLH+AGY RWG+E L+GRTGE MKSL+F+GPTFYQRL HM+EDKVK+R
Sbjct: 1983 FTTASVDVIAEQLHKAGYSRWGAENVLNGRTGERMKSLVFMGPTFYQRLIHMSEDKVKYR 2042
Query: 3478 NIGPVHPVTRQPVADRKRFGGVKFGEMERDCMLAHGAAANLHERLFLLSDLSQMHICQSC 3657
N GPVHP+TRQPVADRKRFGGVKFGEMERDC+LAHG+AANLHERLF+LSD SQMHICQ+C
Sbjct: 2043 NTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAANLHERLFMLSDFSQMHICQTC 2102
Query: 3658 KRVANVIQRPVQGGNKIRAPYCCFCKSGENIVRVNVPYGAKLLYQELFSMGICLKFETEI 3837
+RVANV+ R V GG KIR PYC FCKS ENIVR+NVPYGAKLLYQELFSMGICLKFETE+
Sbjct: 2103 ERVANVVMRSVPGGKKIRGPYCGFCKSSENIVRINVPYGAKLLYQELFSMGICLKFETEV 2162
Query: 3838 C 3840
C
Sbjct: 2163 C 2163
>ref|NP_001177299.1| required to maintain repression7 [Zea mays]
gi|283443696|gb|ADB19857.1| required to maintain
repression 7/RNA polymerase D second largest subunit [Zea
mays] gi|297185477|gb|ADI24118.1| RPD2/E2a [Zea mays]
gi|414585188|tpg|DAA35759.1| TPA: putative DNA-directed
RNA polymerase subunit family protein [Zea mays]
Length = 1229
Score = 1587 bits (4108), Expect = 0.0
Identities = 778/1200 (64%), Positives = 940/1200 (78%), Gaps = 2/1200 (0%)
Frame = +1
Query: 247 IDMEGEQSPNGSDADMEFTMEDFVNEKDKGESMNLDSPSKEMDNLGANVGGLEKFCKEAA 426
ID++G QS D + ++ D VN K E + ++P + +V LEKFCKEA+
Sbjct: 43 IDVDGGQSSMDVDIKGKSSLSDDVNGKSSSEPYS-NAP------IDMSVESLEKFCKEAS 95
Query: 427 RAFFTEQGFISHQINSYNDFIDHGLQDLFDSIGEVTVDPDYDPSKKRGFEWRYASVTFGK 606
R+FF E G ISHQINSYN+F+ HGLQ+LFDS+GEV V+P YDPSKK W++A + FG+
Sbjct: 96 RSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPGYDPSKKGSGGWKHAIIKFGR 155
Query: 607 VRVEKPTFWTGGADVAEECVKLLPRHARLQHMTYSAQMKVEVRVQVYIQEKSDKAKTGKD 786
V++EKP FWTG E V P HARLQ+MTY++++ VEV +QVY EKSDK+KTG D
Sbjct: 156 VKLEKPVFWTGKD---EGSVDFKPWHARLQNMTYASRLIVEVTIQVYSLEKSDKSKTGND 212
Query: 787 SYIQKRILSDEKREIIIGRIPVMVKSNLCWLHTLDKSDCFFDFGGYFLVKGAEKAFIAQE 966
++QKR +E I IG +PVMVKSNLC LH+L++S+C FD GGYFLVKG EK FIAQE
Sbjct: 213 GFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLNESECLFDAGGYFLVKGMEKVFIAQE 272
Query: 967 ERCTTRLWVAEKPSWTITYQSEMRRRGNFNVKLVESS-AEGFSGEKVVNGSFLFAQMPVW 1143
+RC RLW++++P WTI++ SE++RR + +KLVES+ +E FS K++ SFL+A MPVW
Sbjct: 273 QRCLRRLWISDRPCWTISFMSEIKRRRIY-IKLVESTRSEDFSESKIITISFLYATMPVW 331
Query: 1144 IMFFALGASSDKEVFQMIDLEGCQSNMVNILRATIRDAEGKCCDFRKGEKAKEFVYEQLK 1323
++FFALG SSDKEVF MID++ C ++++N + ATI++++ C DFRK +KA+++V E +K
Sbjct: 332 LLFFALGISSDKEVFDMIDMQDCDASVINTISATIKESDKLCEDFRKSDKARQYVDELVK 391
Query: 1324 STKFPPSESLDDCINAFLFPKVVGHKQKAFFLGYMVKCLLLACFGKRKCDNKDDFXXXXX 1503
S++FPP+ES DD I FLFP + G++ KA FLGYMVKCLL+A GKRKCDNKDDF
Sbjct: 392 SSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRL 451
Query: 1504 XXXXXXXXXXMWSHVRHAQRSMVRAMQRDLRGDRDLQFIERYLDASIITNGLNRAFSTGS 1683
+ + +R A++ MV+A+QRDL DR+LQ +ERY+DASI+TNGLNRAFSTGS
Sbjct: 452 DLPGELLGRELRAQLRLAEKRMVKAIQRDLNSDRELQDLERYIDASIVTNGLNRAFSTGS 511
Query: 1684 WCHSYKRTERCSGVVATRRTTNPLQMISDLRKTRWRVSYAGKAGDARYPNPSFWGKLCFL 1863
WCH YKR ERCSG+VAT R TNPLQM+SDLRKTR RV+YAGKAGDARYPNPS+WGKLCF+
Sbjct: 512 WCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFM 571
Query: 1864 STTDGENCGFVKNLAATAIVSSKFTAPGLDKLVSCGMXXXXXXXXXXXXXXXXVFLDGCW 2043
ST DGENCG VKNLA TAIVSS+ P ++ +SCGM +FL+G W
Sbjct: 572 STPDGENCGLVKNLAVTAIVSSRVMQPLIESFISCGMSKLNDIPTEHIQRMDKIFLNGNW 631
Query: 2044 VGVCEDADSFVTNLREMRRKKQIHSQVEIKKDKHQKEVRIFCDVGRILRPLLIVENLKKI 2223
VG CE++ SFV LR MRR I QVEIK+DKH EVR+F D GRILRPLL+VENL KI
Sbjct: 632 VGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDAGRILRPLLVVENLNKI 691
Query: 2224 SNLKGGIRSFQSLMDXXXXXXXXXXXXXDCRTAWGIRYLFEKKDNQPIVNYTHCEXXXXX 2403
KG SF LM D + AWGIR+LFE + I +YTHCE
Sbjct: 692 RKPKGRSFSFHELMQQEIIEFIGVEEEEDIQCAWGIRHLFESEG--AISSYTHCELDPSF 749
Query: 2404 XXXXXCGIIPFANHNLARRVLYQAEKHSQQAIGFSTTNPNIRVDTLTHQLYYPQKPLCRT 2583
CGIIPFANHN ARRVLYQ+EKHSQQAIG+STTNP+IRVDTL+HQLYYPQ+PL +T
Sbjct: 750 LLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKT 809
Query: 2584 VLAECLGEADL-SLGRSEGIARPEYFNGQCAIVAVNVHLGYNQEDSIVINRSSLERGMFR 2760
V+A+CLG +D S GR ARPEYFNGQ AIVAVNVH G+NQEDS+V+NR+SLERGMFR
Sbjct: 810 VIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFR 869
Query: 2761 SEHLRSYKADIENVEITKFKKLKDKVEFGKMQSKKGRVDSLDDDGFPYIGANLHSGDIVI 2940
+EHLRSYKAD+EN + TK KLK+K++FGK +SK+GRVD+LDDDG PY+GA+L + DIVI
Sbjct: 870 TEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYVGASLQTNDIVI 929
Query: 2941 GKVAESGEDYGTKLKHTEKGMVHKVVLSANDEGKSFAAVTLREIRSPCVGDKFSSMHGQK 3120
GKV+ESGED+ KLKHTEKGMV KV+LSANDEGK+FA VTLR++R+PC+GDKFSSMHGQK
Sbjct: 930 GKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQK 989
Query: 3121 GVIGLLESQENFPFTRQGIVPDIVINPHAFPTRQTPGQLLEAALAKGIACGGTTKYATPF 3300
GV+G LESQENFPFT +GIVPDIVINPHAFPTRQTPGQLLEAAL KGIAC GT +YATPF
Sbjct: 990 GVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACKGTMRYATPF 1049
Query: 3301 TTPSIDVITEQLHRAGYQRWGSERFLSGRTGEMMKSLIFIGPTFYQRLTHMAEDKVKFRN 3480
TT S+DVI EQLHRAGY RWGSE L+GRTGE ++SL+F+GPTFYQRL HM+EDKVKFRN
Sbjct: 1050 TTASVDVIAEQLHRAGYSRWGSENVLNGRTGERVQSLVFMGPTFYQRLIHMSEDKVKFRN 1109
Query: 3481 IGPVHPVTRQPVADRKRFGGVKFGEMERDCMLAHGAAANLHERLFLLSDLSQMHICQSCK 3660
GPVHP+TRQPVADRKRFGGVKFGEMERDC+LAHG+AANLHERLFLLSD SQMHICQ+C+
Sbjct: 1110 TGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAANLHERLFLLSDFSQMHICQTCE 1169
Query: 3661 RVANVIQRPVQGGNKIRAPYCCFCKSGENIVRVNVPYGAKLLYQELFSMGICLKFETEIC 3840
RVANV+ R V GG KIR PYC FCKS ENIVR+NVPYGAKLLYQELFSMGICLKFET++C
Sbjct: 1170 RVANVVMRSVPGGKKIRGPYCGFCKSSENIVRINVPYGAKLLYQELFSMGICLKFETQVC 1229
>ref|XP_002468227.1| hypothetical protein SORBIDRAFT_01g042100 [Sorghum bicolor]
gi|241922081|gb|EER95225.1| hypothetical protein
SORBIDRAFT_01g042100 [Sorghum bicolor]
Length = 1228
Score = 1584 bits (4102), Expect = 0.0
Identities = 786/1233 (63%), Positives = 946/1233 (76%), Gaps = 34/1233 (2%)
Frame = +1
Query: 244 DIDMEGEQSPNGSDADMEFTMEDFVNEKDKGESM--NLDSP--------SKEMDNLGA-- 387
++ +G Q NGSD++ E + D N K SM N DSP S ++D G
Sbjct: 3 ELQKDGGQQSNGSDSEPEAMVLDD-NGAGKSHSMDGNRDSPVDVDEGQSSMDVDTKGKPS 61
Query: 388 --------------------NVGGLEKFCKEAARAFFTEQGFISHQINSYNDFIDHGLQD 507
+V LEKFCKEA+R+FF E G ISHQINSYNDF+ HGLQ+
Sbjct: 62 LNDDVNGKSSEPYSNAPIDLSVESLEKFCKEASRSFFDEVGLISHQINSYNDFVSHGLQE 121
Query: 508 LFDSIGEVTVDPDYDPSKKRGFEWRYASVTFGKVRVEKPTFWTGGADVAEECVKLLPRHA 687
LFDS+GEV V+P YDPSKK W++A + FG+V++EKP FWTG E V P HA
Sbjct: 122 LFDSLGEVIVEPGYDPSKKGSGGWKHAIIKFGRVKLEKPVFWTGKD---EGSVDFKPWHA 178
Query: 688 RLQHMTYSAQMKVEVRVQVYIQEKSDKAKTGKDSYIQKRILSDEKREIIIGRIPVMVKSN 867
RLQ+MTY++++ VEV +QVY EKSDK+KTG D ++QKR +E I IG +PVMVKSN
Sbjct: 179 RLQNMTYASRLIVEVNIQVYSLEKSDKSKTGNDGFVQKRDFMNETHWIFIGLLPVMVKSN 238
Query: 868 LCWLHTLDKSDCFFDFGGYFLVKGAEKAFIAQEERCTTRLWVAEKPSWTITYQSEMRRRG 1047
LC LH+L +S+C FD GGYFLVKG EK FIAQE RC RLW+ ++P W I++ SEM+RR
Sbjct: 239 LCLLHSLKESECLFDAGGYFLVKGMEKVFIAQELRCLKRLWIIDRPCWMISFMSEMKRRR 298
Query: 1048 NFNVKLVESS-AEGFSGEKVVNGSFLFAQMPVWIMFFALGASSDKEVFQMIDLEGCQSNM 1224
+ +KLVES+ +E FSG K+++ SFL+A MPVW++FFALG SSDKE F +ID++ C +++
Sbjct: 299 IY-IKLVESTRSEDFSGSKIISISFLYATMPVWLLFFALGISSDKEAFDVIDMQDCDASV 357
Query: 1225 VNILRATIRDAEGKCCDFRKGEKAKEFVYEQLKSTKFPPSESLDDCINAFLFPKVVGHKQ 1404
+N + ATI++++ C FRK +KA+++V E +KS++FPP+ES DD I FLFP + G++
Sbjct: 358 INTISATIKESDELCEGFRKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRN 417
Query: 1405 KAFFLGYMVKCLLLACFGKRKCDNKDDFXXXXXXXXXXXXXXXMWSHVRHAQRSMVRAMQ 1584
KA FLGYMVKCLL+A GKRKCDNKDDF + +H+R A++ MV+A+Q
Sbjct: 418 KALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAHLRLAEKRMVKAIQ 477
Query: 1585 RDLRGDRDLQFIERYLDASIITNGLNRAFSTGSWCHSYKRTERCSGVVATRRTTNPLQMI 1764
RDL DR+LQ +ERY+DASI+TNGL+RAFSTGSWCH YKR ERCSG+VAT R TNPLQM+
Sbjct: 478 RDLNSDRELQDLERYIDASIVTNGLSRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMM 537
Query: 1765 SDLRKTRWRVSYAGKAGDARYPNPSFWGKLCFLSTTDGENCGFVKNLAATAIVSSKFTAP 1944
SDLRKTR RV+YAGKAGDARYPNPS+WGKLCF+ST DGENCG VKNLA TAIVSS+ P
Sbjct: 538 SDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVVQP 597
Query: 1945 GLDKLVSCGMXXXXXXXXXXXXXXXXVFLDGCWVGVCEDADSFVTNLREMRRKKQIHSQV 2124
++ +SCGM +FL+G WVG C+D+ SFV LR MRR I QV
Sbjct: 598 LIESFISCGMSKLNDIPTEHIQRMDKIFLNGNWVGSCKDSASFVFRLRCMRRSSLIDPQV 657
Query: 2125 EIKKDKHQKEVRIFCDVGRILRPLLIVENLKKISNLKGGIRSFQSLMDXXXXXXXXXXXX 2304
EIK+DKH KEVR+F D GRILRPLL+VENLKKI KG SFQ LM
Sbjct: 658 EIKRDKHHKEVRVFSDAGRILRPLLVVENLKKIRKPKGRSFSFQELMQQEIIEFIGVEEE 717
Query: 2305 XDCRTAWGIRYLFEKKDNQPIVNYTHCEXXXXXXXXXXCGIIPFANHNLARRVLYQAEKH 2484
D + AWGIR+LFE + I +YTHCE CGIIPFANHN ARRVLYQ+EKH
Sbjct: 718 EDIQCAWGIRHLFESEG--AISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKH 775
Query: 2485 SQQAIGFSTTNPNIRVDTLTHQLYYPQKPLCRTVLAECLGEADLS-LGRSEGIARPEYFN 2661
SQQAIG+STTNP+IRVDTL+HQLYYPQ+PL +TV+A+CLG +D + GR + RPEYFN
Sbjct: 776 SQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYTTFGRKDDFMRPEYFN 835
Query: 2662 GQCAIVAVNVHLGYNQEDSIVINRSSLERGMFRSEHLRSYKADIENVEITKFKKLKDKVE 2841
GQ AIVAVNVH G+NQEDS+V+NR+SLERGMFR+EHLRSYKAD+EN + TK KLK+K++
Sbjct: 836 GQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKLKEKID 895
Query: 2842 FGKMQSKKGRVDSLDDDGFPYIGANLHSGDIVIGKVAESGEDYGTKLKHTEKGMVHKVVL 3021
FGK +SK+GRVD+LDDDG PYIGA+L + DIVIGKV+ESGED+ KLKHTEKGMV KV+L
Sbjct: 896 FGKTESKRGRVDNLDDDGLPYIGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQKVLL 955
Query: 3022 SANDEGKSFAAVTLREIRSPCVGDKFSSMHGQKGVIGLLESQENFPFTRQGIVPDIVINP 3201
SANDEGK+FA VTLR++R+PC+GDKFSSMHGQKGV+G LESQENFPFT +GIVPDIVINP
Sbjct: 956 SANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHKGIVPDIVINP 1015
Query: 3202 HAFPTRQTPGQLLEAALAKGIACGGTTKYATPFTTPSIDVITEQLHRAGYQRWGSERFLS 3381
HAFPTRQTPGQLLEAAL KGIAC GT +YATPFTT S+DVI EQLHRAGY RWG+E L+
Sbjct: 1016 HAFPTRQTPGQLLEAALGKGIACKGTMRYATPFTTASVDVIAEQLHRAGYSRWGTENVLN 1075
Query: 3382 GRTGEMMKSLIFIGPTFYQRLTHMAEDKVKFRNIGPVHPVTRQPVADRKRFGGVKFGEME 3561
GRTGE M+SLIF+GPTFYQRL HM+EDKVKFRN GPVHP+TRQPVADRKRFGGVKFGEME
Sbjct: 1076 GRTGERMQSLIFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEME 1135
Query: 3562 RDCMLAHGAAANLHERLFLLSDLSQMHICQSCKRVANVIQRPVQGGNKIRAPYCCFCKSG 3741
RDC+LAHG+AANLHERLF+LSD SQMHICQ+C+RVANV+ R V GG KIR PYC FCKS
Sbjct: 1136 RDCLLAHGSAANLHERLFMLSDFSQMHICQTCERVANVVMRSVSGGKKIRGPYCGFCKSS 1195
Query: 3742 ENIVRVNVPYGAKLLYQELFSMGICLKFETEIC 3840
ENIVR+NVPYGAKLLYQELFSMGICLKF+TE+C
Sbjct: 1196 ENIVRINVPYGAKLLYQELFSMGICLKFDTEVC 1228
>gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA polymerase D second
largest subunit 2-2 [Zea mays]
Length = 1229
Score = 1583 bits (4100), Expect = 0.0
Identities = 777/1200 (64%), Positives = 939/1200 (78%), Gaps = 2/1200 (0%)
Frame = +1
Query: 247 IDMEGEQSPNGSDADMEFTMEDFVNEKDKGESMNLDSPSKEMDNLGANVGGLEKFCKEAA 426
ID++G QS D + ++ D VN K E + ++P + +V LEKFCKEA+
Sbjct: 43 IDVDGGQSSMDVDIKGKSSLSDDVNGKSSSEPYS-NAP------IDMSVESLEKFCKEAS 95
Query: 427 RAFFTEQGFISHQINSYNDFIDHGLQDLFDSIGEVTVDPDYDPSKKRGFEWRYASVTFGK 606
R+FF E G ISHQINSYN+F+ HGLQ+LFDS+GEV V+P YDPSKK W++A + FG+
Sbjct: 96 RSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPGYDPSKKGSGGWKHAIIKFGR 155
Query: 607 VRVEKPTFWTGGADVAEECVKLLPRHARLQHMTYSAQMKVEVRVQVYIQEKSDKAKTGKD 786
V++EKP FWTG E V P HARLQ+MTY++++ VEV +QVY EKSDK+KTG D
Sbjct: 156 VKLEKPVFWTGKD---EGSVDFKPWHARLQNMTYASRLIVEVTIQVYSLEKSDKSKTGND 212
Query: 787 SYIQKRILSDEKREIIIGRIPVMVKSNLCWLHTLDKSDCFFDFGGYFLVKGAEKAFIAQE 966
++QKR +E I IG +PVMVKSNLC LH+L++S+C FD GGYFLVKG EK FIAQE
Sbjct: 213 GFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLNESECLFDAGGYFLVKGMEKVFIAQE 272
Query: 967 ERCTTRLWVAEKPSWTITYQSEMRRRGNFNVKLVESS-AEGFSGEKVVNGSFLFAQMPVW 1143
+RC RLW++++P WTI++ SE++RR + +KLVES+ +E FS K++ SFL+A MPVW
Sbjct: 273 QRCLRRLWISDRPCWTISFMSEIKRRRIY-IKLVESTRSEDFSESKIITISFLYATMPVW 331
Query: 1144 IMFFALGASSDKEVFQMIDLEGCQSNMVNILRATIRDAEGKCCDFRKGEKAKEFVYEQLK 1323
++FFALG SSDKEVF MID++ C ++++N + ATI++++ C DFRK +KA+++V E +K
Sbjct: 332 LLFFALGISSDKEVFDMIDMQDCDASVINTISATIKESDKLCEDFRKSDKARQYVDELVK 391
Query: 1324 STKFPPSESLDDCINAFLFPKVVGHKQKAFFLGYMVKCLLLACFGKRKCDNKDDFXXXXX 1503
S++FPP+ES DD I FLFP + G++ KA FLGYMVKCLL+A GKRKCDNKDDF
Sbjct: 392 SSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRL 451
Query: 1504 XXXXXXXXXXMWSHVRHAQRSMVRAMQRDLRGDRDLQFIERYLDASIITNGLNRAFSTGS 1683
+ + +R A++ MV+A+QRDL DR+LQ +ERY+DASI+TNGLNRAFSTGS
Sbjct: 452 DLPGELLGRELRAQLRLAEKRMVKAIQRDLNSDRELQDLERYIDASIVTNGLNRAFSTGS 511
Query: 1684 WCHSYKRTERCSGVVATRRTTNPLQMISDLRKTRWRVSYAGKAGDARYPNPSFWGKLCFL 1863
WCH YKR ERCSG+VAT R TNPLQM+SDLRKTR RV+YAGKAGDARYPNPS+W KLCF+
Sbjct: 512 WCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGDARYPNPSYWEKLCFM 571
Query: 1864 STTDGENCGFVKNLAATAIVSSKFTAPGLDKLVSCGMXXXXXXXXXXXXXXXXVFLDGCW 2043
ST DGENCG VKNLA TAIVSS+ P ++ +SCGM +FL+G W
Sbjct: 572 STPDGENCGLVKNLAVTAIVSSRVMQPLIESFISCGMSKLNDIPTEHIQRMDKIFLNGNW 631
Query: 2044 VGVCEDADSFVTNLREMRRKKQIHSQVEIKKDKHQKEVRIFCDVGRILRPLLIVENLKKI 2223
VG CE++ SFV LR MRR I QVEIK+DKH EVR+F D GRILRPLL+VENL KI
Sbjct: 632 VGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDAGRILRPLLVVENLNKI 691
Query: 2224 SNLKGGIRSFQSLMDXXXXXXXXXXXXXDCRTAWGIRYLFEKKDNQPIVNYTHCEXXXXX 2403
KG SF LM D + AWGIR+LFE + I +YTHCE
Sbjct: 692 RKPKGRSFSFHELMQQEIIEFIGVEEEEDIQCAWGIRHLFESEG--AISSYTHCELDPSF 749
Query: 2404 XXXXXCGIIPFANHNLARRVLYQAEKHSQQAIGFSTTNPNIRVDTLTHQLYYPQKPLCRT 2583
CGIIPFANHN ARRVLYQ+EKHSQQAIG+STTNP+IRVDTL+HQLYYPQ+PL +T
Sbjct: 750 LLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKT 809
Query: 2584 VLAECLGEADL-SLGRSEGIARPEYFNGQCAIVAVNVHLGYNQEDSIVINRSSLERGMFR 2760
V+A+CLG +D S GR ARPEYFNGQ AIVAVNVH G+NQEDS+V+NR+SLERGMFR
Sbjct: 810 VIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFR 869
Query: 2761 SEHLRSYKADIENVEITKFKKLKDKVEFGKMQSKKGRVDSLDDDGFPYIGANLHSGDIVI 2940
+EHLRSYKAD+EN + TK KLK+K++FGK +SK+GRVD+LDDDG PY+GA+L + DIVI
Sbjct: 870 TEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYVGASLQTNDIVI 929
Query: 2941 GKVAESGEDYGTKLKHTEKGMVHKVVLSANDEGKSFAAVTLREIRSPCVGDKFSSMHGQK 3120
GKV+ESGED+ KLKHTEKGMV KV+LSANDEGK+FA VTLR++R+PC+GDKFSSMHGQK
Sbjct: 930 GKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQK 989
Query: 3121 GVIGLLESQENFPFTRQGIVPDIVINPHAFPTRQTPGQLLEAALAKGIACGGTTKYATPF 3300
GV+G LESQENFPFT +GIVPDIVINPHAFPTRQTPGQLLEAAL KGIAC GT +YATPF
Sbjct: 990 GVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACKGTMRYATPF 1049
Query: 3301 TTPSIDVITEQLHRAGYQRWGSERFLSGRTGEMMKSLIFIGPTFYQRLTHMAEDKVKFRN 3480
TT S+DVI EQLHRAGY RWGSE L+GRTGE ++SL+F+GPTFYQRL HM+EDKVKFRN
Sbjct: 1050 TTASVDVIAEQLHRAGYSRWGSENVLNGRTGERVQSLVFMGPTFYQRLIHMSEDKVKFRN 1109
Query: 3481 IGPVHPVTRQPVADRKRFGGVKFGEMERDCMLAHGAAANLHERLFLLSDLSQMHICQSCK 3660
GPVHP+TRQPVADRKRFGGVKFGEMERDC+LAHG+AANLHERLFLLSD SQMHICQ+C+
Sbjct: 1110 TGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAANLHERLFLLSDFSQMHICQTCE 1169
Query: 3661 RVANVIQRPVQGGNKIRAPYCCFCKSGENIVRVNVPYGAKLLYQELFSMGICLKFETEIC 3840
RVANV+ R V GG KIR PYC FCKS ENIVR+NVPYGAKLLYQELFSMGICLKFET++C
Sbjct: 1170 RVANVVMRSVPGGKKIRGPYCGFCKSSENIVRINVPYGAKLLYQELFSMGICLKFETQVC 1229
>ref|NP_001054041.1| Os04g0641000 [Oryza sativa Japonica Group]
gi|113565612|dbj|BAF15955.1| Os04g0641000, partial [Oryza
sativa Japonica Group]
Length = 1270
Score = 1581 bits (4093), Expect = 0.0
Identities = 764/1175 (65%), Positives = 921/1175 (78%), Gaps = 24/1175 (2%)
Frame = +1
Query: 388 NVGGLEKFCKEAARAFFTEQGFISHQINSYNDFIDHGLQDLFDSIGEVTVDPDYDPSKKR 567
++ LEKFCKEA+R+FF E G ISHQINSYN+F+ HGLQ+LFDS+GEVTV+P YDPS +
Sbjct: 97 SIPSLEKFCKEASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPSYDPSNRG 156
Query: 568 GFEWRYASVTFGKVRVEKPTFWTGGADVAEECVKLLPRHARLQHMTYSAQMKVEVRVQVY 747
WR+A + FG+V++E+P FW+ G D+ E+ +KL PRHARLQ+MTYS++MKVEV QVY
Sbjct: 157 PGGWRHAIIKFGRVQLEEPVFWSHGCDIDEQSLKLKPRHARLQNMTYSSKMKVEVHFQVY 216
Query: 748 IQEKSDKAKTGKDSYIQKRILSDEKREIIIGRIPVMVKSNLCWLHTLDKSDCFFDFGGYF 927
EKSDKAKTG D + KR + +E I IGR+PVMV SNLCWLH L +SDC FD GGYF
Sbjct: 217 SMEKSDKAKTGNDKFGYKRNIINETYYINIGRLPVMVMSNLCWLHKLKESDCQFDSGGYF 276
Query: 928 LVKGAEKAFIAQEERCTTRLWVAEKPSWTITYQSEMRRRGNFNVKLVESSA-EGFSGEKV 1104
L+KG EK FIAQE++C TR+WV ++P W +++ S +RRR + +KL++S+ E SG K+
Sbjct: 277 LIKGMEKVFIAQEQKCLTRIWVEDRPCWMVSFLSPIRRRRIY-IKLIDSANNEDASGGKI 335
Query: 1105 VNGSFLFAQMPVWIMFFALGASSDKEVFQMIDLEGCQSNMVNILRATIRDAEGKCCDFRK 1284
++ SFL+A MP+W+MFFALG SSDK++F +I++E C + ++N + ATI++++ C FRK
Sbjct: 336 ISISFLYANMPIWLMFFALGISSDKDIFDVINMEDCDACVINTITATIKESDELCEGFRK 395
Query: 1285 GEKAKEFVYEQLKSTKFPPSESLDDCINAFLFPKVVGHKQKAFFLGYMVKCLLLACFGKR 1464
+KA+++V E +K++KFPP+E DD I +LFP + G++ KA FLGYMVKCLL+A GKR
Sbjct: 396 SDKARQYVDELIKNSKFPPAEPFDDYIAKYLFPSISGNRNKALFLGYMVKCLLMAFTGKR 455
Query: 1465 KCDNKDDFXXXXXXXXXXXXXXXMWSHVRHAQRSMVRAMQRDLRGDRDLQFIERYLDASI 1644
KCDNKDDF + +H+RHA+R MV+A+QRDL +R+LQ + YLDASI
Sbjct: 456 KCDNKDDFRNKRLDLAGELLGRELRAHIRHAERLMVKALQRDLNSERELQEFDHYLDASI 515
Query: 1645 ITNGLNRAFSTGSWCHSYKRTERCSGVVATRRTTNPLQMISDLRKTRWRVSYAGKAGDAR 1824
ITNGLNRAFSTGSWCH YKR ERC+G+VAT R TNPLQMISDLRKTR RV+YAGKAGDAR
Sbjct: 516 ITNGLNRAFSTGSWCHPYKRNERCAGIVATLRRTNPLQMISDLRKTRQRVAYAGKAGDAR 575
Query: 1825 YPNPSFWGKLCFLSTTDGENCGFVKNLAATAIVSSKFTAPGLDKLVSCGMXXXXXXXXXX 2004
YPNPS+WGKLCF+ST DGENCG VKNLA TA VSS+ P +D+ +SCGM
Sbjct: 576 YPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSRVAPPLIDRFISCGMNKLHEIPTEE 635
Query: 2005 XXXXXXVFLDGCWVGVCEDADSFVTNLREMRRKKQIHSQVEIKKDKHQKEVRIFCDVGRI 2184
+FL+G WVG C D SFV LR MRR I QVEIK+DKHQ+EVR+F D GRI
Sbjct: 636 VPRMDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIKRDKHQREVRVFSDAGRI 695
Query: 2185 LRPLLIVENLKKISNLKGGIRSFQSLMDXXXXXXXXXXXXXDCRTAWGIRYLFEKKDNQP 2364
LRPLL+VENL KI KG SFQ LM D R+AWGIR LFE ++ P
Sbjct: 696 LRPLLVVENLNKIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESEEEAP 755
Query: 2365 IVN--------------------YTHCEXXXXXXXXXXCGIIPFANHNLARRVLYQAEKH 2484
+V YTHCE CGIIPFANHN ARRVLYQ+EKH
Sbjct: 756 MVKMNKAEDVFNVKRKIGGEVSGYTHCELDLSFLLGLSCGIIPFANHNFARRVLYQSEKH 815
Query: 2485 SQQAIGFSTTNPNIRVDTLTHQLYYPQKPLCRTVLAECLGEADLSLGRSEGIARPEYFNG 2664
SQQAIG+STTNP+IRVDTL+HQLYYPQ+PL +TV+A+C+G ++ + GR + ARPEYFNG
Sbjct: 816 SQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCIGRSEYTFGRKDDFARPEYFNG 875
Query: 2665 QCAIVAVNVHLGYNQEDSIVINRSSLERGMFRSEHLRSYKADIENVEI---TKFKKLKDK 2835
Q AIVAVNVH G+NQEDS+V+NR+SLERGMFR+EH R+YKA++EN K K+KDK
Sbjct: 876 QNAIVAVNVHQGFNQEDSVVMNRASLERGMFRTEHFRNYKAEVENKGGPGGNKRLKMKDK 935
Query: 2836 VEFGKMQSKKGRVDSLDDDGFPYIGANLHSGDIVIGKVAESGEDYGTKLKHTEKGMVHKV 3015
++FGKMQSK+GRVD+LDDDG PY+GA+L SGDIVIGKV+ESGED+ KLKHTEKGMV +V
Sbjct: 936 IDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRV 995
Query: 3016 VLSANDEGKSFAAVTLREIRSPCVGDKFSSMHGQKGVIGLLESQENFPFTRQGIVPDIVI 3195
+LSANDEGK+FA VTLR++RSPC+GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVI
Sbjct: 996 LLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVI 1055
Query: 3196 NPHAFPTRQTPGQLLEAALAKGIACGGTTKYATPFTTPSIDVITEQLHRAGYQRWGSERF 3375
NPHAFPTRQTPGQLLEAAL KGIA GGT +YATPFTT S DVIT+QLH+AG+ RWG+E
Sbjct: 1056 NPHAFPTRQTPGQLLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRWGAESV 1115
Query: 3376 LSGRTGEMMKSLIFIGPTFYQRLTHMAEDKVKFRNIGPVHPVTRQPVADRKRFGGVKFGE 3555
L+GRTGE M SLIF+GPTFYQRL HMAEDKVKFRN GPVHP+TRQPVADRKRFGGVKFGE
Sbjct: 1116 LNGRTGERMHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGE 1175
Query: 3556 MERDCMLAHGAAANLHERLFLLSDLSQMHICQSCKRVANVIQRPVQGGNKIRAPYCCFCK 3735
MERDC+LAHGAAANLHERLF+LSD SQMH+CQ+C+RVANVI RPV GG KIR PYC FC+
Sbjct: 1176 MERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCR 1235
Query: 3736 SGENIVRVNVPYGAKLLYQELFSMGICLKFETEIC 3840
S ENIVR+NVPYGAKLLYQELFSMGICL+FETE+C
Sbjct: 1236 SSENIVRINVPYGAKLLYQELFSMGICLRFETEVC 1270
>emb|CAE05960.2| OSJNBa0063C18.1 [Oryza sativa Japonica Group]
Length = 1316
Score = 1581 bits (4093), Expect = 0.0
Identities = 764/1175 (65%), Positives = 921/1175 (78%), Gaps = 24/1175 (2%)
Frame = +1
Query: 388 NVGGLEKFCKEAARAFFTEQGFISHQINSYNDFIDHGLQDLFDSIGEVTVDPDYDPSKKR 567
++ LEKFCKEA+R+FF E G ISHQINSYN+F+ HGLQ+LFDS+GEVTV+P YDPS +
Sbjct: 143 SIPSLEKFCKEASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPSYDPSNRG 202
Query: 568 GFEWRYASVTFGKVRVEKPTFWTGGADVAEECVKLLPRHARLQHMTYSAQMKVEVRVQVY 747
WR+A + FG+V++E+P FW+ G D+ E+ +KL PRHARLQ+MTYS++MKVEV QVY
Sbjct: 203 PGGWRHAIIKFGRVQLEEPVFWSHGCDIDEQSLKLKPRHARLQNMTYSSKMKVEVHFQVY 262
Query: 748 IQEKSDKAKTGKDSYIQKRILSDEKREIIIGRIPVMVKSNLCWLHTLDKSDCFFDFGGYF 927
EKSDKAKTG D + KR + +E I IGR+PVMV SNLCWLH L +SDC FD GGYF
Sbjct: 263 SMEKSDKAKTGNDKFGYKRNIINETYYINIGRLPVMVMSNLCWLHKLKESDCQFDSGGYF 322
Query: 928 LVKGAEKAFIAQEERCTTRLWVAEKPSWTITYQSEMRRRGNFNVKLVESSA-EGFSGEKV 1104
L+KG EK FIAQE++C TR+WV ++P W +++ S +RRR + +KL++S+ E SG K+
Sbjct: 323 LIKGMEKVFIAQEQKCLTRIWVEDRPCWMVSFLSPIRRRRIY-IKLIDSANNEDASGGKI 381
Query: 1105 VNGSFLFAQMPVWIMFFALGASSDKEVFQMIDLEGCQSNMVNILRATIRDAEGKCCDFRK 1284
++ SFL+A MP+W+MFFALG SSDK++F +I++E C + ++N + ATI++++ C FRK
Sbjct: 382 ISISFLYANMPIWLMFFALGISSDKDIFDVINMEDCDACVINTITATIKESDELCEGFRK 441
Query: 1285 GEKAKEFVYEQLKSTKFPPSESLDDCINAFLFPKVVGHKQKAFFLGYMVKCLLLACFGKR 1464
+KA+++V E +K++KFPP+E DD I +LFP + G++ KA FLGYMVKCLL+A GKR
Sbjct: 442 SDKARQYVDELIKNSKFPPAEPFDDYIAKYLFPSISGNRNKALFLGYMVKCLLMAFTGKR 501
Query: 1465 KCDNKDDFXXXXXXXXXXXXXXXMWSHVRHAQRSMVRAMQRDLRGDRDLQFIERYLDASI 1644
KCDNKDDF + +H+RHA+R MV+A+QRDL +R+LQ + YLDASI
Sbjct: 502 KCDNKDDFRNKRLDLAGELLGRELRAHIRHAERLMVKALQRDLNSERELQEFDHYLDASI 561
Query: 1645 ITNGLNRAFSTGSWCHSYKRTERCSGVVATRRTTNPLQMISDLRKTRWRVSYAGKAGDAR 1824
ITNGLNRAFSTGSWCH YKR ERC+G+VAT R TNPLQMISDLRKTR RV+YAGKAGDAR
Sbjct: 562 ITNGLNRAFSTGSWCHPYKRNERCAGIVATLRRTNPLQMISDLRKTRQRVAYAGKAGDAR 621
Query: 1825 YPNPSFWGKLCFLSTTDGENCGFVKNLAATAIVSSKFTAPGLDKLVSCGMXXXXXXXXXX 2004
YPNPS+WGKLCF+ST DGENCG VKNLA TA VSS+ P +D+ +SCGM
Sbjct: 622 YPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSRVAPPLIDRFISCGMNKLHEIPTEE 681
Query: 2005 XXXXXXVFLDGCWVGVCEDADSFVTNLREMRRKKQIHSQVEIKKDKHQKEVRIFCDVGRI 2184
+FL+G WVG C D SFV LR MRR I QVEIK+DKHQ+EVR+F D GRI
Sbjct: 682 VPRMDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIKRDKHQREVRVFSDAGRI 741
Query: 2185 LRPLLIVENLKKISNLKGGIRSFQSLMDXXXXXXXXXXXXXDCRTAWGIRYLFEKKDNQP 2364
LRPLL+VENL KI KG SFQ LM D R+AWGIR LFE ++ P
Sbjct: 742 LRPLLVVENLNKIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESEEEAP 801
Query: 2365 IVN--------------------YTHCEXXXXXXXXXXCGIIPFANHNLARRVLYQAEKH 2484
+V YTHCE CGIIPFANHN ARRVLYQ+EKH
Sbjct: 802 MVKMNKAEDVFNVKRKIGGEVSGYTHCELDLSFLLGLSCGIIPFANHNFARRVLYQSEKH 861
Query: 2485 SQQAIGFSTTNPNIRVDTLTHQLYYPQKPLCRTVLAECLGEADLSLGRSEGIARPEYFNG 2664
SQQAIG+STTNP+IRVDTL+HQLYYPQ+PL +TV+A+C+G ++ + GR + ARPEYFNG
Sbjct: 862 SQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCIGRSEYTFGRKDDFARPEYFNG 921
Query: 2665 QCAIVAVNVHLGYNQEDSIVINRSSLERGMFRSEHLRSYKADIENVEI---TKFKKLKDK 2835
Q AIVAVNVH G+NQEDS+V+NR+SLERGMFR+EH R+YKA++EN K K+KDK
Sbjct: 922 QNAIVAVNVHQGFNQEDSVVMNRASLERGMFRTEHFRNYKAEVENKGGPGGNKRLKMKDK 981
Query: 2836 VEFGKMQSKKGRVDSLDDDGFPYIGANLHSGDIVIGKVAESGEDYGTKLKHTEKGMVHKV 3015
++FGKMQSK+GRVD+LDDDG PY+GA+L SGDIVIGKV+ESGED+ KLKHTEKGMV +V
Sbjct: 982 IDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRV 1041
Query: 3016 VLSANDEGKSFAAVTLREIRSPCVGDKFSSMHGQKGVIGLLESQENFPFTRQGIVPDIVI 3195
+LSANDEGK+FA VTLR++RSPC+GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVI
Sbjct: 1042 LLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVI 1101
Query: 3196 NPHAFPTRQTPGQLLEAALAKGIACGGTTKYATPFTTPSIDVITEQLHRAGYQRWGSERF 3375
NPHAFPTRQTPGQLLEAAL KGIA GGT +YATPFTT S DVIT+QLH+AG+ RWG+E
Sbjct: 1102 NPHAFPTRQTPGQLLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRWGAESV 1161
Query: 3376 LSGRTGEMMKSLIFIGPTFYQRLTHMAEDKVKFRNIGPVHPVTRQPVADRKRFGGVKFGE 3555
L+GRTGE M SLIF+GPTFYQRL HMAEDKVKFRN GPVHP+TRQPVADRKRFGGVKFGE
Sbjct: 1162 LNGRTGERMHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGE 1221
Query: 3556 MERDCMLAHGAAANLHERLFLLSDLSQMHICQSCKRVANVIQRPVQGGNKIRAPYCCFCK 3735
MERDC+LAHGAAANLHERLF+LSD SQMH+CQ+C+RVANVI RPV GG KIR PYC FC+
Sbjct: 1222 MERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCR 1281
Query: 3736 SGENIVRVNVPYGAKLLYQELFSMGICLKFETEIC 3840
S ENIVR+NVPYGAKLLYQELFSMGICL+FETE+C
Sbjct: 1282 SSENIVRINVPYGAKLLYQELFSMGICLRFETEVC 1316
>ref|XP_002447199.1| hypothetical protein SORBIDRAFT_06g030300 [Sorghum bicolor]
gi|241938382|gb|EES11527.1| hypothetical protein
SORBIDRAFT_06g030300 [Sorghum bicolor]
Length = 1239
Score = 1580 bits (4090), Expect = 0.0
Identities = 774/1200 (64%), Positives = 937/1200 (78%), Gaps = 2/1200 (0%)
Frame = +1
Query: 247 IDMEGEQSPNGSDADMEFTMEDFVNEKDKGESMNLDSPSKEMDNLGANVGGLEKFCKEAA 426
ID+ QS D + ++ D VN K E + ++P + +V LEKFCKEA+
Sbjct: 53 IDVNEGQSSMDVDIKAKSSLNDDVNGKSSSEPYS-NAP------IDMSVESLEKFCKEAS 105
Query: 427 RAFFTEQGFISHQINSYNDFIDHGLQDLFDSIGEVTVDPDYDPSKKRGFEWRYASVTFGK 606
R+FF E G ISHQINSYN+F+ HGLQ+LFDS+GEV V+P YDPSKK W++A + FG+
Sbjct: 106 RSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPGYDPSKKGSGGWKHAIIKFGR 165
Query: 607 VRVEKPTFWTGGADVAEECVKLLPRHARLQHMTYSAQMKVEVRVQVYIQEKSDKAKTGKD 786
V++EKP FWTG E V P HARLQ+MTY++++KVEV +QVY EKSDK+KTG +
Sbjct: 166 VKLEKPVFWTGKD---EGSVDFKPWHARLQNMTYASRLKVEVTIQVYSLEKSDKSKTGNE 222
Query: 787 SYIQKRILSDEKREIIIGRIPVMVKSNLCWLHTLDKSDCFFDFGGYFLVKGAEKAFIAQE 966
++QKR +E I IG +PVMVKSNLC LH+L +S+C FD GGYFLVKG EK FIAQE
Sbjct: 223 GFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLKESECLFDAGGYFLVKGMEKVFIAQE 282
Query: 967 ERCTTRLWVAEKPSWTITYQSEMRRRGNFNVKLVESS-AEGFSGEKVVNGSFLFAQMPVW 1143
+RC RLWV+++P W I++ E++RR + +KLVES+ +E FSG KV++ SFL+A MPVW
Sbjct: 283 QRCLKRLWVSDRPFWMISFMHEIKRRRIY-IKLVESTRSEDFSGSKVISISFLYATMPVW 341
Query: 1144 IMFFALGASSDKEVFQMIDLEGCQSNMVNILRATIRDAEGKCCDFRKGEKAKEFVYEQLK 1323
++FFALG SSDKE F +ID++ C ++++N + ATI++++ C FRK +KA+++V E +K
Sbjct: 342 LLFFALGISSDKEAFDVIDMQDCDASVINTISATIKESDELCKGFRKSDKARQYVDELVK 401
Query: 1324 STKFPPSESLDDCINAFLFPKVVGHKQKAFFLGYMVKCLLLACFGKRKCDNKDDFXXXXX 1503
S++FPP+ES DD + FLFP + G++ KAFFLGYMVKCLL+A GKRKCDNKDDF
Sbjct: 402 SSRFPPAESFDDYVARFLFPDINGNRNKAFFLGYMVKCLLMAFTGKRKCDNKDDFRNKRL 461
Query: 1504 XXXXXXXXXXMWSHVRHAQRSMVRAMQRDLRGDRDLQFIERYLDASIITNGLNRAFSTGS 1683
+ + +R +R MV+A+QRDL DR+LQ +ERY+DASI+TNGLNRAFSTGS
Sbjct: 462 DLPGELLGRELRAQLRLLERRMVKAIQRDLNNDRELQDLERYIDASIVTNGLNRAFSTGS 521
Query: 1684 WCHSYKRTERCSGVVATRRTTNPLQMISDLRKTRWRVSYAGKAGDARYPNPSFWGKLCFL 1863
WCH YKR ERCSG+VAT R TNPLQM+SDLRKTR RV+YAGKAGDARYPNPS+WGKLCFL
Sbjct: 522 WCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFL 581
Query: 1864 STTDGENCGFVKNLAATAIVSSKFTAPGLDKLVSCGMXXXXXXXXXXXXXXXXVFLDGCW 2043
ST DGENCG VKNLA TAIVSS+ P ++ +SCGM +FL+G W
Sbjct: 582 STPDGENCGLVKNLAVTAIVSSRVGQPLIESFISCGMSKLNDIPTEHIQRMDKIFLNGNW 641
Query: 2044 VGVCEDADSFVTNLREMRRKKQIHSQVEIKKDKHQKEVRIFCDVGRILRPLLIVENLKKI 2223
VG C+D+ SFV LR MRR I QVEIK+DKH KEVR+F D GRILRPLL+VENL KI
Sbjct: 642 VGSCKDSASFVFRLRCMRRSSMIDPQVEIKRDKHHKEVRVFSDAGRILRPLLVVENLNKI 701
Query: 2224 SNLKGGIRSFQSLMDXXXXXXXXXXXXXDCRTAWGIRYLFEKKDNQPIVNYTHCEXXXXX 2403
KG SFQ LM D + AWGIR+LFE + I +YTHCE
Sbjct: 702 RKPKGRSFSFQELMQQEIIEFIGVEEEEDIQCAWGIRHLFESEG--AISSYTHCELDPSF 759
Query: 2404 XXXXXCGIIPFANHNLARRVLYQAEKHSQQAIGFSTTNPNIRVDTLTHQLYYPQKPLCRT 2583
CGIIPFANHN ARRVLYQ+EKHSQQAIG+STTNP+IRVDTL+HQLYYPQ+PL +T
Sbjct: 760 LMGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKT 819
Query: 2584 VLAECLGEADLS-LGRSEGIARPEYFNGQCAIVAVNVHLGYNQEDSIVINRSSLERGMFR 2760
V+A+CLG +D + GR + RPEYFNGQ AIVAVNVH G+NQEDS+V+NR+SLERGMFR
Sbjct: 820 VIADCLGRSDYTAFGRKDDYTRPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFR 879
Query: 2761 SEHLRSYKADIENVEITKFKKLKDKVEFGKMQSKKGRVDSLDDDGFPYIGANLHSGDIVI 2940
+EHLRSYK D+EN + TK KLK+K++FGK +SK+GRVD+LDDDG PYIGA+L + DIVI
Sbjct: 880 TEHLRSYKTDVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYIGASLQTNDIVI 939
Query: 2941 GKVAESGEDYGTKLKHTEKGMVHKVVLSANDEGKSFAAVTLREIRSPCVGDKFSSMHGQK 3120
GKV+ESGED+ KLKHTEKGMV KV+LSANDEGK+FA VTLR++R+PC+GDKFSSMHGQK
Sbjct: 940 GKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQK 999
Query: 3121 GVIGLLESQENFPFTRQGIVPDIVINPHAFPTRQTPGQLLEAALAKGIACGGTTKYATPF 3300
GV+G LESQENFPFT +GIVPDIVINPHAFPTRQTPGQLLEAAL KGIAC GT +YATPF
Sbjct: 1000 GVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACKGTMRYATPF 1059
Query: 3301 TTPSIDVITEQLHRAGYQRWGSERFLSGRTGEMMKSLIFIGPTFYQRLTHMAEDKVKFRN 3480
TT S+DVI EQLH+AGY RWG+E L+GRTGE M+SL+F+GPTFYQRL HM+EDKVKFRN
Sbjct: 1060 TTASVDVIAEQLHKAGYSRWGAENVLNGRTGERMQSLVFMGPTFYQRLIHMSEDKVKFRN 1119
Query: 3481 IGPVHPVTRQPVADRKRFGGVKFGEMERDCMLAHGAAANLHERLFLLSDLSQMHICQSCK 3660
GPVHP+TRQPVADRKRFGGVKFGEMERDC+LAHG+AANLHERLF+LSD SQMHICQ+C+
Sbjct: 1120 TGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAANLHERLFMLSDFSQMHICQTCE 1179
Query: 3661 RVANVIQRPVQGGNKIRAPYCCFCKSGENIVRVNVPYGAKLLYQELFSMGICLKFETEIC 3840
RVANV+ R V GG KIR PYC FCKS ENIVR+NVPYGAKLLYQELFSMGICLKF+TE+C
Sbjct: 1180 RVANVVMRSVPGGKKIRGPYCGFCKSSENIVRINVPYGAKLLYQELFSMGICLKFDTEVC 1239
>ref|XP_006652896.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
[Oryza brachyantha]
Length = 1250
Score = 1575 bits (4079), Expect = 0.0
Identities = 771/1244 (61%), Positives = 941/1244 (75%), Gaps = 52/1244 (4%)
Frame = +1
Query: 265 QSPNGSDADMEFTMED--------FVNEKDKGESMNLDSPSKEMDNLGANVG-------- 396
QS G+D +ME + D +++ + SM++D +D +G+++G
Sbjct: 10 QSSGGADPEMEPMILDDGIEGISHSMDDANGHSSMDVDRGLHSVDIMGSSMGDDGKGKHN 69
Query: 397 ------------GLEKFCKEAARAFFTEQGFISHQINSYNDFIDHGLQDLFDSIGEVTVD 540
LEKFCKEA+R+FF E G ISHQINSYNDF+ +GLQ+LFDS+GEVTV+
Sbjct: 70 SHAQIPIDMSIPSLEKFCKEASRSFFDEIGLISHQINSYNDFVAYGLQELFDSLGEVTVE 129
Query: 541 PDYDPSKKRGFEWRYASVTFGKVRVEKPTFWTGGADVAEECVKLLPRHARLQHMTYSAQM 720
P YDPS + WR+A + FG+V++E+P FW G D+ EE +KL PRHARLQ+MTYS++M
Sbjct: 130 PSYDPSNRGPGGWRHAIIKFGRVKLEEPVFWAHGYDIDEESLKLKPRHARLQNMTYSSKM 189
Query: 721 KVEVRVQVYIQEKSDKAKTGKDSYIQKRILSDEKREIIIGRIPVMVKSNLCWLHTLDKSD 900
KVEV +QVY EKSDKAKTG D + K+ + +E I GR+PVMV SNLCWLH L +SD
Sbjct: 190 KVEVHIQVYSMEKSDKAKTGNDKFSYKKDIINETHYINFGRLPVMVMSNLCWLHKLKESD 249
Query: 901 CFFDFGGYFLVKGAEKAFIAQEERCTTRLWVAEKPSWTITYQSEMRRRGNFNVKLVESSA 1080
C FD GGYFL+KG EK FIAQE++C TR+WV E+P WT+++ S +RRR + +KL++S+
Sbjct: 250 CQFDSGGYFLIKGMEKVFIAQEQKCLTRIWVEERPCWTVSFLSAIRRRRIY-IKLIDSTK 308
Query: 1081 EGFSGEKVVNGSFLFAQMPVWIMFFALGASSDKEVFQMIDLEGCQSNMVNILRATIRDAE 1260
K+++ SFL+A MP+W+MFFALG +SDK+VF +ID++ C + ++N + ATI++++
Sbjct: 309 N--EDRKIISISFLYANMPIWLMFFALGITSDKDVFDVIDMQDCDACVINTISATIKESD 366
Query: 1261 GKCCDFRKGEKAKEFVYEQLKSTKFPPSESLDDCINAFLFPKVVGHKQKAFFLGYMVKCL 1440
C FRK ++A+++V E +K +KFPP E DD + +LFP + G++ KA FLGYMVKCL
Sbjct: 367 ELCEGFRKSDRARQYVDELIKDSKFPPGEPFDDYVARYLFPGISGNRNKALFLGYMVKCL 426
Query: 1441 LLACFGKRKCDNKDDFXXXXXXXXXXXXXXXMWSHVRHAQRSMVRAMQRDLRGDRDLQFI 1620
L+A GKRKCDNKDDF + +H+RHA+R MV+A+QRDL DR+LQ +
Sbjct: 427 LMAFTGKRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERLMVKALQRDLNSDRELQEL 486
Query: 1621 ERYLDASIITNGLNRAFSTGSWCHSYKRTERCSGVVATRRTTNPLQMISDLRKTRWRVSY 1800
+RYLDASIITNGLNRAFSTGSWCH YK+ ERC+G+VAT R TNPLQMISDLRKTR RV+Y
Sbjct: 487 DRYLDASIITNGLNRAFSTGSWCHPYKKNERCAGIVATLRRTNPLQMISDLRKTRQRVAY 546
Query: 1801 AGKAGDARYPNPSFWGKLCFLSTTDGENCGFVKNLAATAIVSSKFTAPGLDKLVSCGMXX 1980
AGKAGDARYPNPS+WGKLCF+ST DGENCG VKNLA TA+VSS+ P +++ +SCGM
Sbjct: 547 AGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAVVSSRVAQPVINRFISCGMNK 606
Query: 1981 XXXXXXXXXXXXXXVFLDGCWVGVCEDADSFVTNLREMRRKKQIHSQVEIKKDKHQKEVR 2160
+FL+G WVG C D SFV LR MRR I QVEIK DKHQ+EVR
Sbjct: 607 LHEIPTEEVPKMDKIFLNGDWVGSCTDPASFVLRLRCMRRSGLIGPQVEIKWDKHQREVR 666
Query: 2161 IFCDVGRILRPLLIVENLKKISNLKGGIRSFQSLMDXXXXXXXXXXXXXDCRTAWGIRYL 2340
+F D GRILRPLL+VENL KI KGG SFQSLM D ++AWGIR+L
Sbjct: 667 VFSDAGRILRPLLVVENLNKIRRPKGGSYSFQSLMQQEIIEFIGVEEEEDTKSAWGIRHL 726
Query: 2341 FEKKDNQP---------------------IVNYTHCEXXXXXXXXXXCGIIPFANHNLAR 2457
F + + + YTHCE CGIIPFANHN AR
Sbjct: 727 FGSEGEKAALVKTNRTEDAFTIRRDIEEGVSGYTHCELDLSFLLGLSCGIIPFANHNFAR 786
Query: 2458 RVLYQAEKHSQQAIGFSTTNPNIRVDTLTHQLYYPQKPLCRTVLAECLGEADLSLGRSEG 2637
RVLYQ+EKHSQQAIG+STTNP+IRVDTL+HQLYYPQ+PL +TV+A+C+G ++ + GR +
Sbjct: 787 RVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVVADCIGRSEYTFGRKDD 846
Query: 2638 IARPEYFNGQCAIVAVNVHLGYNQEDSIVINRSSLERGMFRSEHLRSYKADIENVEI--- 2808
ARPEYFNGQ AIVAVNVH G+NQEDS+V+NR+SLERGMFR+EH R+YKA++EN
Sbjct: 847 FARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHFRNYKAEVENKSAPGG 906
Query: 2809 TKFKKLKDKVEFGKMQSKKGRVDSLDDDGFPYIGANLHSGDIVIGKVAESGEDYGTKLKH 2988
K K+KDK++FGKMQSK+GRVD+LDDDG PY+GA+L SGDIVIGKV+ESGED+ KLKH
Sbjct: 907 NKRLKMKDKIDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKH 966
Query: 2989 TEKGMVHKVVLSANDEGKSFAAVTLREIRSPCVGDKFSSMHGQKGVIGLLESQENFPFTR 3168
TEKGMV +V+LSANDEGK+FA VTLR++RSPC+GDKFSSMHGQKGVIG LESQENFPFT
Sbjct: 967 TEKGMVQRVLLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVIGFLESQENFPFTC 1026
Query: 3169 QGIVPDIVINPHAFPTRQTPGQLLEAALAKGIACGGTTKYATPFTTPSIDVITEQLHRAG 3348
QGIVPDIVINPHAFPTRQTPGQLLEAAL KGIA GGT +YATPFTT S DVIT+QLH+AG
Sbjct: 1027 QGIVPDIVINPHAFPTRQTPGQLLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAG 1086
Query: 3349 YQRWGSERFLSGRTGEMMKSLIFIGPTFYQRLTHMAEDKVKFRNIGPVHPVTRQPVADRK 3528
+ RWG+E L+GRTGE M SLIF+GP FYQRL HMAEDKVKFRN GPVHP+TRQPVADRK
Sbjct: 1087 FSRWGAESVLNGRTGERMHSLIFMGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRK 1146
Query: 3529 RFGGVKFGEMERDCMLAHGAAANLHERLFLLSDLSQMHICQSCKRVANVIQRPVQGGNKI 3708
RFGGVKFGEMERDC+LAHGAAANLHERLF+LSD SQMHICQ+C+RVANVI RPV GG KI
Sbjct: 1147 RFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICQTCERVANVIMRPVPGGKKI 1206
Query: 3709 RAPYCCFCKSGENIVRVNVPYGAKLLYQELFSMGICLKFETEIC 3840
R PYC FC+S ENI R+NVPYGAKLLYQELFSMGICL+FETE+C
Sbjct: 1207 RGPYCGFCRSSENIARINVPYGAKLLYQELFSMGICLRFETEVC 1250
>gb|AAY45706.1| RNA polymerase IV second largest subunit [Zea mays]
Length = 1170
Score = 1568 bits (4060), Expect = 0.0
Identities = 767/1182 (64%), Positives = 924/1182 (78%), Gaps = 2/1182 (0%)
Frame = +1
Query: 301 TMEDFVNEKDKGESMNLDSPSKEMDNLGANVGGLEKFCKEAARAFFTEQGFISHQINSYN 480
++ D VN K E + +++LG KFCKEA+R+FF E G ISHQINSYN
Sbjct: 2 SLSDDVNGKSSSEPYSNAPIDMSVESLG-------KFCKEASRSFFDEVGLISHQINSYN 54
Query: 481 DFIDHGLQDLFDSIGEVTVDPDYDPSKKRGFEWRYASVTFGKVRVEKPTFWTGGADVAEE 660
+F+ HGLQ+LFDS+GEV V+P YDPSKK W++A + FG+V++EKP FWTG E
Sbjct: 55 EFVSHGLQELFDSLGEVIVEPGYDPSKKGSGGWKHAIIKFGRVKLEKPVFWTGKD---EG 111
Query: 661 CVKLLPRHARLQHMTYSAQMKVEVRVQVYIQEKSDKAKTGKDSYIQKRILSDEKREIIIG 840
V P HARLQ+MTY++++ VEV +QVY EKSDK+KTG D ++QKR +E I IG
Sbjct: 112 SVDFKPWHARLQNMTYASRLIVEVTIQVYSLEKSDKSKTGNDGFVQKRNFMNETHWIFIG 171
Query: 841 RIPVMVKSNLCWLHTLDKSDCFFDFGGYFLVKGAEKAFIAQEERCTTRLWVAEKPSWTIT 1020
+PVMVKSNLC LH+L++S+C FD GGYFLVKG EK FIAQE+RC RLW++++P WTI+
Sbjct: 172 LLPVMVKSNLCLLHSLNESECLFDAGGYFLVKGMEKVFIAQEQRCLRRLWISDRPCWTIS 231
Query: 1021 YQSEMRRRGNFNVKLVESS-AEGFSGEKVVNGSFLFAQMPVWIMFFALGASSDKEVFQMI 1197
+ SE++RR + +KLVES+ +E FS K++ SFL+A MPVW+ FALG SSDKEVF MI
Sbjct: 232 FMSEIKRRRIY-IKLVESTRSEDFSESKIITISFLYATMPVWLXXFALGISSDKEVFDMI 290
Query: 1198 DLEGCQSNMVNILRATIRDAEGKCCDFRKGEKAKEFVYEQLKSTKFPPSESLDDCINAFL 1377
++ C ++++N + ATI++++ C DFRK +KA+++V E +KS++FPP+ES DD I FL
Sbjct: 291 XMQDCDASVINTISATIKESDKLCEDFRKSDKARQYVDELVKSSRFPPAESFDDYIARFL 350
Query: 1378 FPKVVGHKQKAFFLGYMVKCLLLACFGKRKCDNKDDFXXXXXXXXXXXXXXXMWSHVRHA 1557
FP + G++ KA FLGYMVKCLL+A GKRKCDNKDDF + + +R A
Sbjct: 351 FPDISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLA 410
Query: 1558 QRSMVRAMQRDLRGDRDLQFIERYLDASIITNGLNRAFSTGSWCHSYKRTERCSGVVATR 1737
++ MV+A+QRDL DR+LQ +ERY+DASI+TNGLNRAFSTGSWCH YKR ERCSG+VAT
Sbjct: 411 EKRMVKAIQRDLNSDRELQDLERYIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATL 470
Query: 1738 RTTNPLQMISDLRKTRWRVSYAGKAGDARYPNPSFWGKLCFLSTTDGENCGFVKNLAATA 1917
R TNPLQM+SDLRKTR RV+YAGKAGDARYPNPS+WGKLCF+ST DGENCG VKNLA TA
Sbjct: 471 RRTNPLQMMSDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTA 530
Query: 1918 IVSSKFTAPGLDKLVSCGMXXXXXXXXXXXXXXXXVFLDGCWVGVCEDADSFVTNLREMR 2097
IVSS+ P ++ +SCGM +FL+G WVG CE++ SFV LR MR
Sbjct: 531 IVSSRVMQPLIESFISCGMSKLNDIPTEHIQRMDKIFLNGNWVGSCENSASFVFRLRCMR 590
Query: 2098 RKKQIHSQVEIKKDKHQKEVRIFCDVGRILRPLLIVENLKKISNLKGGIRSFQSLMDXXX 2277
R I QVEIK+DKH EVR+F D GRILRPLL+VENL KI KG SF LM
Sbjct: 591 RSSLIDPQVEIKRDKHHNEVRVFTDAGRILRPLLVVENLNKIRKPKGRSFSFHELMQQEI 650
Query: 2278 XXXXXXXXXXDCRTAWGIRYLFEKKDNQPIVNYTHCEXXXXXXXXXXCGIIPFANHNLAR 2457
D + AWGIR+LFE + I +YTHCE CGIIPFANHN AR
Sbjct: 651 IEFIGVEEEEDIQCAWGIRHLFESEG--AISSYTHCELDPSFLLGLSCGIIPFANHNFAR 708
Query: 2458 RVLYQAEKHSQQAIGFSTTNPNIRVDTLTHQLYYPQKPLCRTVLAECLGEADL-SLGRSE 2634
RVLYQ+EKHSQQAIG+STTNP+IRVDTL+HQLYYPQ+PL +TV+A+CLG +D S GR
Sbjct: 709 RVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYASFGRKN 768
Query: 2635 GIARPEYFNGQCAIVAVNVHLGYNQEDSIVINRSSLERGMFRSEHLRSYKADIENVEITK 2814
ARPEYFNGQ AIVAVNVH G+NQEDS+V+NR+SLERGMFR+EHLRSYKAD+EN + TK
Sbjct: 769 DFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTK 828
Query: 2815 FKKLKDKVEFGKMQSKKGRVDSLDDDGFPYIGANLHSGDIVIGKVAESGEDYGTKLKHTE 2994
KLK+K++FGK +SK+GR D+LDDDG PY+GA+L + DIVIGKV+ESGED+ KLKHTE
Sbjct: 829 RLKLKEKIDFGKTESKRGRXDNLDDDGLPYVGASLQTNDIVIGKVSESGEDHSIKLKHTE 888
Query: 2995 KGMVHKVVLSANDEGKSFAAVTLREIRSPCVGDKFSSMHGQKGVIGLLESQENFPFTRQG 3174
KGMV KV+LSANDEGK+FA VTLR++R+PC+GDKFSSMHGQKGV+G LESQENFPFT +G
Sbjct: 889 KGMVQKVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEG 948
Query: 3175 IVPDIVINPHAFPTRQTPGQLLEAALAKGIACGGTTKYATPFTTPSIDVITEQLHRAGYQ 3354
IVPDIVINPHAFPTRQTPGQLLEAAL KGIAC GT +YATPFTT S+DVI EQLHRAGY
Sbjct: 949 IVPDIVINPHAFPTRQTPGQLLEAALGKGIACKGTMRYATPFTTASVDVIAEQLHRAGYS 1008
Query: 3355 RWGSERFLSGRTGEMMKSLIFIGPTFYQRLTHMAEDKVKFRNIGPVHPVTRQPVADRKRF 3534
RWGSE L+GRTGE ++SL+F+GPTFYQRL HM+EDKVKFRN GPVHP+TRQPVADRKRF
Sbjct: 1009 RWGSENVLNGRTGERVQSLVFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRF 1068
Query: 3535 GGVKFGEMERDCMLAHGAAANLHERLFLLSDLSQMHICQSCKRVANVIQRPVQGGNKIRA 3714
GGVKFGEMERDC+LAHG+AANLHERLFLLSD SQMHICQ+C+RVANV+ R V GG KIR
Sbjct: 1069 GGVKFGEMERDCLLAHGSAANLHERLFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRG 1128
Query: 3715 PYCCFCKSGENIVRVNVPYGAKLLYQELFSMGICLKFETEIC 3840
PYC FCKS ENIVR+NVPYGAKLLYQELFSMGICLKFET++C
Sbjct: 1129 PYCGFCKSSENIVRINVPYGAKLLYQELFSMGICLKFETQVC 1170
>emb|CAD41847.2| OSJNBb0079B02.6 [Oryza sativa Japonica Group]
Length = 1343
Score = 1566 bits (4055), Expect = 0.0
Identities = 764/1202 (63%), Positives = 921/1202 (76%), Gaps = 51/1202 (4%)
Frame = +1
Query: 388 NVGGLEKFCKEAARAFFTEQGFISHQINSYNDFIDHGLQDLFDSIGEVTVDPDYDPSKKR 567
++ LEKFCKEA+R+FF E G ISHQINSYN+F+ HGLQ+LFDS+GEVTV+P YDPS +
Sbjct: 143 SIPSLEKFCKEASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPSYDPSNRG 202
Query: 568 GFEWRYASVTFGKVRVEKPTFWTGGADVAEECVKLLPRHARLQHMTYSAQMKVEVRVQVY 747
WR+A + FG+V++E+P FW+ G D+ E+ +KL PRHARLQ+MTYS++MKVEV QVY
Sbjct: 203 PGGWRHAIIKFGRVQLEEPVFWSHGCDIDEQSLKLKPRHARLQNMTYSSKMKVEVHFQVY 262
Query: 748 IQEKSDKAKTGKDSYIQKRILSDEKREIIIGRIPVMVKSNLCWLHTLDKSDCFFDFGGYF 927
EKSDKAKTG D + KR + +E I IGR+PVMV SNLCWLH L +SDC FD GGYF
Sbjct: 263 SMEKSDKAKTGNDKFGYKRNIINETYYINIGRLPVMVMSNLCWLHKLKESDCQFDSGGYF 322
Query: 928 LVKGAEK---------------------------AFIAQEERCTTRLWVAEKPSWTITYQ 1026
L+KG EK FIAQE++C TR+WV ++P W +++
Sbjct: 323 LIKGMEKDELQGCGGKLYSRNLCLNGKLETPTQKVFIAQEQKCLTRIWVEDRPCWMVSFL 382
Query: 1027 SEMRRRGNFNVKLVESSA-EGFSGEKVVNGSFLFAQMPVWIMFFALGASSDKEVFQMIDL 1203
S +RRR + +KL++S+ E SG K+++ SFL+A MP+W+MFFALG SSDK++F +I++
Sbjct: 383 SPIRRRRIY-IKLIDSANNEDASGGKIISISFLYANMPIWLMFFALGISSDKDIFDVINM 441
Query: 1204 EGCQSNMVNILRATIRDAEGKCCDFRKGEKAKEFVYEQLKSTKFPPSESLDDCINAFLFP 1383
E C + ++N + ATI++++ C FRK +KA+++V E +K++KFPP+E DD I +LFP
Sbjct: 442 EDCDACVINTITATIKESDELCEGFRKSDKARQYVDELIKNSKFPPAEPFDDYIAKYLFP 501
Query: 1384 KVVGHKQKAFFLGYMVKCLLLACFGKRKCDNKDDFXXXXXXXXXXXXXXXMWSHVRHAQR 1563
+ G++ KA FLGYMVKCLL+A GKRKCDNKDDF + +H+RHA+R
Sbjct: 502 SISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAER 561
Query: 1564 SMVRAMQRDLRGDRDLQFIERYLDASIITNGLNRAFSTGSWCHSYKRTERCSGVVATRRT 1743
MV+A+QRDL +R+LQ + YLDASIITNGLNRAFSTGSWCH YKR ERC+G+VAT R
Sbjct: 562 LMVKALQRDLNSERELQEFDHYLDASIITNGLNRAFSTGSWCHPYKRNERCAGIVATLRR 621
Query: 1744 TNPLQMISDLRKTRWRVSYAGKAGDARYPNPSFWGKLCFLSTTDGENCGFVKNLAATAIV 1923
TNPLQMISDLRKTR RV+YAGKAGDARYPNPS+WGKLCF+ST DGENCG VKNLA TA V
Sbjct: 622 TNPLQMISDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATV 681
Query: 1924 SSKFTAPGLDKLVSCGMXXXXXXXXXXXXXXXXVFLDGCWVGVCEDADSFVTNLREMRRK 2103
SS+ P +D+ +SCGM +FL+G WVG C D SFV LR MRR
Sbjct: 682 SSRVAPPLIDRFISCGMNKLHEIPTEEVPRMDKIFLNGDWVGSCSDPASFVLRLRCMRRS 741
Query: 2104 KQIHSQVEIKKDKHQKEVRIFCDVGRILRPLLIVENLKKISNLKGGIRSFQSLMDXXXXX 2283
I QVEIK+DKHQ+EVR+F D GRILRPLL+VENL KI KG SFQ LM
Sbjct: 742 GLIDPQVEIKRDKHQREVRVFSDAGRILRPLLVVENLNKIRRPKGSSYSFQWLMQQEIIE 801
Query: 2284 XXXXXXXXDCRTAWGIRYLFEKKDNQPIVN--------------------YTHCEXXXXX 2403
D R+AWGIR LFE ++ P+V YTHCE
Sbjct: 802 FIGVEEEEDIRSAWGIRNLFESEEEAPMVKMNKAEDVFNVKRKIGGEVSGYTHCELDLSF 861
Query: 2404 XXXXXCGIIPFANHNLARRVLYQAEKHSQQAIGFSTTNPNIRVDTLTHQLYYPQKPLCRT 2583
CGIIPFANHN ARRVLYQ+EKHSQQAIG+STTNP+IRVDTL+HQLYYPQ+PL +T
Sbjct: 862 LLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKT 921
Query: 2584 VLAECLGEADLSLGRSEGIARPEYFNGQCAIVAVNVHLGYNQEDSIVINRSSLERGMFRS 2763
V+A+C+G ++ + GR + ARPEYFNGQ AIVAVNVH G+NQEDS+V+NR+SLERGMFR+
Sbjct: 922 VIADCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSVVMNRASLERGMFRT 981
Query: 2764 EHLRSYKADIENVEI---TKFKKLKDKVEFGKMQSKKGRVDSLDDDGFPYIGANLHSGDI 2934
EH R+YKA++EN K K+KDK++FGKMQSK+GRVD+LDDDG PY+GA+L SGDI
Sbjct: 982 EHFRNYKAEVENKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDI 1041
Query: 2935 VIGKVAESGEDYGTKLKHTEKGMVHKVVLSANDEGKSFAAVTLREIRSPCVGDKFSSMHG 3114
VIGKV+ESGED+ KLKHTEKGMV +V+LSANDEGK+FA VTLR++RSPC+GDKFSSMHG
Sbjct: 1042 VIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHG 1101
Query: 3115 QKGVIGLLESQENFPFTRQGIVPDIVINPHAFPTRQTPGQLLEAALAKGIACGGTTKYAT 3294
QKGV+G LESQENFPFT QGIVPDIVINPHAFPTRQTPGQLLEAAL KGIA GGT +YAT
Sbjct: 1102 QKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIALGGTMRYAT 1161
Query: 3295 PFTTPSIDVITEQLHRAGYQRWGSERFLSGRTGEMMKSLIFIGPTFYQRLTHMAEDKVKF 3474
PFTT S DVIT+QLH+AG+ RWG+E L+GRTGE M SLIF+GPTFYQRL HMAEDKVKF
Sbjct: 1162 PFTTASFDVITDQLHKAGFSRWGAESVLNGRTGERMHSLIFMGPTFYQRLIHMAEDKVKF 1221
Query: 3475 RNIGPVHPVTRQPVADRKRFGGVKFGEMERDCMLAHGAAANLHERLFLLSDLSQMHICQS 3654
RN GPVHP+TRQPVADRKRFGGVKFGEMERDC+LAHGAAANLHERLF+LSD SQMH+CQ+
Sbjct: 1222 RNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHVCQT 1281
Query: 3655 CKRVANVIQRPVQGGNKIRAPYCCFCKSGENIVRVNVPYGAKLLYQELFSMGICLKFETE 3834
C+RVANVI RPV GG KIR PYC FC+S ENIVR+NVPYGAKLLYQELFSMGICL+FETE
Sbjct: 1282 CERVANVIMRPVPGGKKIRGPYCGFCRSSENIVRINVPYGAKLLYQELFSMGICLRFETE 1341
Query: 3835 IC 3840
+C
Sbjct: 1342 VC 1343
>emb|CAJ86030.1| B0414F07.4 [Oryza sativa Indica Group]
Length = 1343
Score = 1564 bits (4049), Expect = 0.0
Identities = 764/1202 (63%), Positives = 920/1202 (76%), Gaps = 51/1202 (4%)
Frame = +1
Query: 388 NVGGLEKFCKEAARAFFTEQGFISHQINSYNDFIDHGLQDLFDSIGEVTVDPDYDPSKKR 567
++ LEKFCKEA+R+FF E G ISHQINSYN+F+ HGLQ+LFDS+GEVTV+P YDPS +
Sbjct: 143 SIPSLEKFCKEASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPSYDPSNRG 202
Query: 568 GFEWRYASVTFGKVRVEKPTFWTGGADVAEECVKLLPRHARLQHMTYSAQMKVEVRVQVY 747
WR+A + FG+V++E+P FW+ G D+ E+ +KL PRHARLQ+MTYS++MKVEV QVY
Sbjct: 203 PGGWRHAIIKFGRVQLEEPVFWSHGCDIDEQSLKLKPRHARLQNMTYSSKMKVEVHFQVY 262
Query: 748 IQEKSDKAKTGKDSYIQKRILSDEKREIIIGRIPVMVKSNLCWLHTLDKSDCFFDFGGYF 927
EKSDKAKTG D + KR + +E I IGR+PVMV SNLCWLH L +SDC FD GGYF
Sbjct: 263 SMEKSDKAKTGNDKFGYKRNIINETYYINIGRLPVMVMSNLCWLHKLKESDCQFDSGGYF 322
Query: 928 LVKGAEK---------------------------AFIAQEERCTTRLWVAEKPSWTITYQ 1026
L+KG EK FIAQE++C TR+WV ++P W +++
Sbjct: 323 LIKGMEKDELQGCGGKLYSRNLCLNGKLETPTQKVFIAQEQKCLTRIWVEDRPCWMVSFL 382
Query: 1027 SEMRRRGNFNVKLVESSA-EGFSGEKVVNGSFLFAQMPVWIMFFALGASSDKEVFQMIDL 1203
S +RRR + +KL++S+ E SG K+++ SFL+A MP+W+MFFALG SSDK++F +I++
Sbjct: 383 SPIRRRRIY-IKLIDSANNEDASGGKIISISFLYANMPIWLMFFALGISSDKDIFDVINM 441
Query: 1204 EGCQSNMVNILRATIRDAEGKCCDFRKGEKAKEFVYEQLKSTKFPPSESLDDCINAFLFP 1383
E C + ++N + ATI++++ C FRK +KA+++V E +K++KFPP+E DD I +LFP
Sbjct: 442 EDCDACVINTITATIKESDELCEGFRKSDKARQYVDELIKNSKFPPAEPFDDYIAKYLFP 501
Query: 1384 KVVGHKQKAFFLGYMVKCLLLACFGKRKCDNKDDFXXXXXXXXXXXXXXXMWSHVRHAQR 1563
+ G++ KA FLGYMVKCLL+A GKRKCDNKDDF + +H+RHA+R
Sbjct: 502 SISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAER 561
Query: 1564 SMVRAMQRDLRGDRDLQFIERYLDASIITNGLNRAFSTGSWCHSYKRTERCSGVVATRRT 1743
MV+A+QRDL +R+LQ + YLDASIITNGLNRAFSTGSWCH YKR ERC+G+VAT R
Sbjct: 562 LMVKALQRDLNSERELQEFDHYLDASIITNGLNRAFSTGSWCHPYKRNERCAGIVATLRR 621
Query: 1744 TNPLQMISDLRKTRWRVSYAGKAGDARYPNPSFWGKLCFLSTTDGENCGFVKNLAATAIV 1923
TNPLQMISDLRKTR RV+YAGKAGDARYPNPS+WGKLCF+ST DGENCG VKNLA TA V
Sbjct: 622 TNPLQMISDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATV 681
Query: 1924 SSKFTAPGLDKLVSCGMXXXXXXXXXXXXXXXXVFLDGCWVGVCEDADSFVTNLREMRRK 2103
SS+ P +D+ +SCGM +FL+G WVG C D SFV LR MRR
Sbjct: 682 SSRVAPPLIDRFISCGMNKLHEIPTEEVPRMDKIFLNGDWVGSCSDPASFVLRLRCMRRS 741
Query: 2104 KQIHSQVEIKKDKHQKEVRIFCDVGRILRPLLIVENLKKISNLKGGIRSFQSLMDXXXXX 2283
I QVEIK DKHQ+EVR+F D GRILRPLL+VENL KI KG SFQ LM
Sbjct: 742 GLIDPQVEIKWDKHQREVRVFSDAGRILRPLLVVENLNKIRRPKGSSYSFQWLMQQEIIE 801
Query: 2284 XXXXXXXXDCRTAWGIRYLFEKKDNQPIVN--------------------YTHCEXXXXX 2403
D R+AWGIR LFE ++ P+V YTHCE
Sbjct: 802 FIGVEEEEDIRSAWGIRNLFESEEEAPMVKMNKAEDVFNVKRKIGGEVSGYTHCELDLSF 861
Query: 2404 XXXXXCGIIPFANHNLARRVLYQAEKHSQQAIGFSTTNPNIRVDTLTHQLYYPQKPLCRT 2583
CGIIPFANHN ARRVLYQ+EKHSQQAIG+STTNP+IRVDTL+HQLYYPQ+PL +T
Sbjct: 862 LLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKT 921
Query: 2584 VLAECLGEADLSLGRSEGIARPEYFNGQCAIVAVNVHLGYNQEDSIVINRSSLERGMFRS 2763
V+A+C+G ++ + GR + ARPEYFNGQ AIVAVNVH G+NQEDS+V+NR+SLERGMFR+
Sbjct: 922 VIADCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRT 981
Query: 2764 EHLRSYKADIENVEI---TKFKKLKDKVEFGKMQSKKGRVDSLDDDGFPYIGANLHSGDI 2934
EH R+YKA++EN K K+KDK++FGKMQSK+GRVD+LDDDG PY+GA+L SGDI
Sbjct: 982 EHFRNYKAEVENKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDI 1041
Query: 2935 VIGKVAESGEDYGTKLKHTEKGMVHKVVLSANDEGKSFAAVTLREIRSPCVGDKFSSMHG 3114
VIGKV+ESGED+ KLKHTEKGMV +V+LSANDEGK+FA VTLR++RSPC+GDKFSSMHG
Sbjct: 1042 VIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHG 1101
Query: 3115 QKGVIGLLESQENFPFTRQGIVPDIVINPHAFPTRQTPGQLLEAALAKGIACGGTTKYAT 3294
QKGV+G LESQENFPFT QGIVPDIVINPHAFPTRQTPGQLLEAAL KGIA GGT +YAT
Sbjct: 1102 QKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIALGGTMRYAT 1161
Query: 3295 PFTTPSIDVITEQLHRAGYQRWGSERFLSGRTGEMMKSLIFIGPTFYQRLTHMAEDKVKF 3474
PFTT S DVIT+QLH+AG+ RWG+E L+GRTGE M SLIF+GPTFYQRL HMAEDKVKF
Sbjct: 1162 PFTTASFDVITDQLHKAGFSRWGAESVLNGRTGERMHSLIFMGPTFYQRLIHMAEDKVKF 1221
Query: 3475 RNIGPVHPVTRQPVADRKRFGGVKFGEMERDCMLAHGAAANLHERLFLLSDLSQMHICQS 3654
RN GPVHP+TRQPVADRKRFGGVKFGEMERDC+LAHGAAANLHERLF+LSD SQMH+CQ+
Sbjct: 1222 RNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHVCQT 1281
Query: 3655 CKRVANVIQRPVQGGNKIRAPYCCFCKSGENIVRVNVPYGAKLLYQELFSMGICLKFETE 3834
C+RVANVI RPV GG KIR PYC FC+S ENIVR+NVPYGAKLLYQELFSMGICL+FETE
Sbjct: 1282 CERVANVIMRPVPGGKKIRGPYCGFCRSSENIVRINVPYGAKLLYQELFSMGICLRFETE 1341
Query: 3835 IC 3840
+C
Sbjct: 1342 VC 1343
>ref|XP_003577435.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
[Brachypodium distachyon]
Length = 1213
Score = 1556 bits (4030), Expect = 0.0
Identities = 761/1210 (62%), Positives = 933/1210 (77%), Gaps = 15/1210 (1%)
Frame = +1
Query: 256 EGEQSPNGSDADMEFTMEDFVNEKDKGESMNLDSPSKEMD------NLGA------NVGG 399
+ S NG + ++E + D NE+ +M+ + MD ++G N+
Sbjct: 7 DNAHSKNGLEPELEPMILDD-NEESGSHTMDDSNGQSSMDIDIEGSSMGEQIPADMNLTS 65
Query: 400 LEKFCKEAARAFFTEQGFISHQINSYNDFIDHGLQDLFDSIGEVTVDPDYDPSKKRGFEW 579
LEKFCKEA+R+FF E G ISHQINSYN+FI HGLQ+LFDS+GEVTV+P YDPSKK W
Sbjct: 66 LEKFCKEASRSFFEEIGLISHQINSYNEFISHGLQELFDSLGEVTVEPGYDPSKKGPGGW 125
Query: 580 RYASVTFGKVRVEKPTFWTGGADVAEECVKLLPRHARLQHMTYSAQMKVEVRVQVYIQEK 759
R+A + FGKV++E+P FW+G D+ EE +KL PRHARLQ+MTYS++M+VEV +QVY EK
Sbjct: 126 RHAIIKFGKVKLEEPVFWSGKIDIDEESLKLKPRHARLQNMTYSSKMEVEVNIQVYSMEK 185
Query: 760 SDKAKTGKDSYIQKRILSDEKREIIIGRIPVMVKSNLCWLHTLDKSDCFFDFGGYFLVKG 939
SDKAKTG D + KR + +E + IGR+PVMV S+LCWLH L +SDC FD GGYFL+KG
Sbjct: 186 SDKAKTGNDHFGHKRDIINETHWVTIGRLPVMVNSDLCWLHKLGESDCLFDSGGYFLIKG 245
Query: 940 AEKAFIAQEERCTTRLWVAEKPSWTITYQSEMRRRGNFNVKLVESSAEG-FSGEKVVNGS 1116
EK FIAQE+RC TR+WVA++P W ++Y SEM+RR + +KL++S+ +G K+++ S
Sbjct: 246 MEKIFIAQEQRCLTRIWVADQPCWNVSYLSEMKRRRVY-IKLIDSTTNNDLNGAKIISIS 304
Query: 1117 FLFAQMPVWIMFFALGASSDKEVFQMIDLEGCQSNMVNILRATIRDAEGKCCDFRKGEKA 1296
FL+A MP+W++FFALG SSDKEVF MID++ C ++++N + ATIR+++ C FR+ +KA
Sbjct: 305 FLYANMPIWLLFFALGVSSDKEVFDMIDMKDCDASVINAIYATIRESDELCEGFRQSDKA 364
Query: 1297 KEFVYEQLKSTKFPPSESLDDCINAFLFPKVVGHKQKAFFLGYMVKCLLLACFGKRKCDN 1476
+++V + +KS+KFPP+E D + +LFP + G++ K+FFLGYMVKCLL+A GKRKCDN
Sbjct: 365 RKYVDDLVKSSKFPPAEPFTDYVAKYLFPGISGNRNKSFFLGYMVKCLLMAFTGKRKCDN 424
Query: 1477 KDDFXXXXXXXXXXXXXXXMWSHVRHAQRSMVRAMQRDLRGDRDLQFIERYLDASIITNG 1656
KDDF + +H+RHA+R MV+AMQRDL DRDLQF RYLDASIITNG
Sbjct: 425 KDDFRNKRLELPGQLLGRELRAHLRHAERLMVKAMQRDLNSDRDLQFPLRYLDASIITNG 484
Query: 1657 LNRAFSTGSWCHSYKRTERCSGVVATRRTTNPLQMISDLRKTRWRVSYAGKAGDARYPNP 1836
+NRAF+TGSW H Y R ERCSG+VAT R TNPLQM+SDLRK+R +V+YAGK GDARYPNP
Sbjct: 485 INRAFATGSWSHPYIRNERCSGIVATLRRTNPLQMMSDLRKSRQQVAYAGKVGDARYPNP 544
Query: 1837 SFWGKLCFLSTTDGENCGFVKNLAATAIVSSKFTAPGLDKLVSCGMXXXXXXXXXXXXXX 2016
S+WGK+CF+ST DGENCG VKNLA TAIVSS+ P +D+ VSCGM
Sbjct: 545 SYWGKMCFMSTPDGENCGLVKNLAVTAIVSSRVVQPLIDRFVSCGMNKLDEISAKEIPKM 604
Query: 2017 XXVFLDGCWVGVCEDADSFVTNLREMRRKKQIHSQVEIKKDKHQ--KEVRIFCDVGRILR 2190
+FL+G W+G C D SFV LR MRR I QVEIK+DKHQ EVR+F D GRILR
Sbjct: 605 DKIFLNGDWIGSCTDPASFVMRLRCMRRANLIDPQVEIKRDKHQFPGEVRVFSDAGRILR 664
Query: 2191 PLLIVENLKKISNLKGGIRSFQSLMDXXXXXXXXXXXXXDCRTAWGIRYLFEKKDNQPIV 2370
PLL+VENL KI K +FQ+L+ D + AWGIR+LF + +
Sbjct: 665 PLLVVENLNKIRKSKDRPYTFQALLQQEIIEYIGVEEEEDIQCAWGIRHLFPSS-GEKVS 723
Query: 2371 NYTHCEXXXXXXXXXXCGIIPFANHNLARRVLYQAEKHSQQAIGFSTTNPNIRVDTLTHQ 2550
YTHCE CG+IPFANHN ARRVLYQ+EKHSQQAIG+STTNP RVDT +HQ
Sbjct: 724 GYTHCELDLSFLLGLSCGLIPFANHNFARRVLYQSEKHSQQAIGYSTTNPLTRVDTHSHQ 783
Query: 2551 LYYPQKPLCRTVLAECLGEADLSLGRSEGIARPEYFNGQCAIVAVNVHLGYNQEDSIVIN 2730
LYYPQ+PL +TV A+C+G +D ++GR + ARPEYFNGQ AIVAVNVH G+NQEDS+V+N
Sbjct: 784 LYYPQRPLFKTVTADCIGRSDYTIGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMN 843
Query: 2731 RSSLERGMFRSEHLRSYKADIENVEITKFKKLKDKVEFGKMQSKKGRVDSLDDDGFPYIG 2910
R+SLERGMFR+EH+RSYKA++E E TK KLK+KV+FGKMQSK+GRVD+LDDDG PY+G
Sbjct: 844 RASLERGMFRTEHIRSYKAEVETKEPTKRLKLKEKVDFGKMQSKRGRVDNLDDDGLPYVG 903
Query: 2911 ANLHSGDIVIGKVAESGEDYGTKLKHTEKGMVHKVVLSANDEGKSFAAVTLREIRSPCVG 3090
A+L SGDIVIGKV+ESGED+ K+KHTEKGM +V+LSANDEGK+FA VTLR++RSPCVG
Sbjct: 904 ASLQSGDIVIGKVSESGEDHSIKMKHTEKGMAQRVLLSANDEGKNFAVVTLRQVRSPCVG 963
Query: 3091 DKFSSMHGQKGVIGLLESQENFPFTRQGIVPDIVINPHAFPTRQTPGQLLEAALAKGIAC 3270
DKFSSMHGQKGVIG LESQENFPFT QGIVPD+VINPHAFPTRQTPGQLLEAAL KGIA
Sbjct: 964 DKFSSMHGQKGVIGFLESQENFPFTCQGIVPDVVINPHAFPTRQTPGQLLEAALGKGIAL 1023
Query: 3271 GGTTKYATPFTTPSIDVITEQLHRAGYQRWGSERFLSGRTGEMMKSLIFIGPTFYQRLTH 3450
GG +YATPFT S++VI+EQLH+AG+ R G+E ++GRTGE M SLIF+GP FYQRLTH
Sbjct: 1024 GGAMRYATPFTPASLEVISEQLHKAGFSRSGAESVINGRTGERMHSLIFMGPNFYQRLTH 1083
Query: 3451 MAEDKVKFRNIGPVHPVTRQPVADRKRFGGVKFGEMERDCMLAHGAAANLHERLFLLSDL 3630
MAEDKVKFRN GPVHP+TRQPVADRKRFGGVKFGEMERDC+LAHGAAANLHERLF+LSD
Sbjct: 1084 MAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDF 1143
Query: 3631 SQMHICQSCKRVANVIQRPVQGGNKIRAPYCCFCKSGENIVRVNVPYGAKLLYQELFSMG 3810
SQMHIC++C+RVANV+ R V GG +IR PYC FC+S EN VR+ VPYGAKLLYQELF MG
Sbjct: 1144 SQMHICRTCERVANVVMRSVPGGKRIRGPYCGFCRSSENTVRIAVPYGAKLLYQELFCMG 1203
Query: 3811 ICLKFETEIC 3840
ICLKF+TEIC
Sbjct: 1204 ICLKFQTEIC 1213
>ref|XP_003564776.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
[Brachypodium distachyon]
Length = 1213
Score = 1556 bits (4030), Expect = 0.0
Identities = 760/1210 (62%), Positives = 933/1210 (77%), Gaps = 15/1210 (1%)
Frame = +1
Query: 256 EGEQSPNGSDADMEFTMEDFVNEKDKGESMNLDSPSKEMD------NLGA------NVGG 399
+ S NG + ++E + D NE+ + +M+ + MD ++G N+
Sbjct: 7 DNAHSKNGPEPELEPMILDD-NEESRSHTMDDSNGQSSMDIDIEGSSMGEQIPADMNLTS 65
Query: 400 LEKFCKEAARAFFTEQGFISHQINSYNDFIDHGLQDLFDSIGEVTVDPDYDPSKKRGFEW 579
LEKFCKEA+R+FF E G ISHQINSYN+F+ HGLQ+LFDS+GEVTV+P YDPSKK W
Sbjct: 66 LEKFCKEASRSFFEEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPGYDPSKKGPGGW 125
Query: 580 RYASVTFGKVRVEKPTFWTGGADVAEECVKLLPRHARLQHMTYSAQMKVEVRVQVYIQEK 759
R+A + FGKV++E+P FW+G + EE +KL PRHARLQ+MTYS++M+VEV +QVY EK
Sbjct: 126 RHAIIKFGKVKLEEPVFWSGKIGIDEESLKLKPRHARLQNMTYSSKMEVEVNIQVYSMEK 185
Query: 760 SDKAKTGKDSYIQKRILSDEKREIIIGRIPVMVKSNLCWLHTLDKSDCFFDFGGYFLVKG 939
SDKAKTG D + KR + +E + IGR+PVMV S+LCWLH L +SDC FD GGYFL+KG
Sbjct: 186 SDKAKTGNDHFGHKRDIINETHWVTIGRLPVMVNSDLCWLHKLGESDCLFDSGGYFLIKG 245
Query: 940 AEKAFIAQEERCTTRLWVAEKPSWTITYQSEMRRRGNFNVKLVESSAEG-FSGEKVVNGS 1116
EK FIAQE+RC TR+WVA++P W ++Y SEM+RR + +KL++S+ +G K+++ S
Sbjct: 246 MEKIFIAQEQRCLTRIWVADRPCWNVSYLSEMKRRRVY-IKLIDSTTNNDLNGAKIISIS 304
Query: 1117 FLFAQMPVWIMFFALGASSDKEVFQMIDLEGCQSNMVNILRATIRDAEGKCCDFRKGEKA 1296
FL+A MP+W++FFALG SSDKEVF MID++ C ++++N + ATIR+++ C FR+ +KA
Sbjct: 305 FLYANMPIWLLFFALGVSSDKEVFDMIDMKDCDASVINAISATIRESDELCEGFRQSDKA 364
Query: 1297 KEFVYEQLKSTKFPPSESLDDCINAFLFPKVVGHKQKAFFLGYMVKCLLLACFGKRKCDN 1476
+++V + +KS+KFPP+E D + +LFP + G++ KAFFLGYMVKCLL+A GKRKCDN
Sbjct: 365 RKYVDDLVKSSKFPPAEPFTDYVAKYLFPGISGNRNKAFFLGYMVKCLLMAFTGKRKCDN 424
Query: 1477 KDDFXXXXXXXXXXXXXXXMWSHVRHAQRSMVRAMQRDLRGDRDLQFIERYLDASIITNG 1656
KDDF + +H+RHA+R MV+AMQRDL DRDLQF RYLDASIITNG
Sbjct: 425 KDDFRNKRLELPGQLLGRELRAHLRHAERLMVKAMQRDLNSDRDLQFPLRYLDASIITNG 484
Query: 1657 LNRAFSTGSWCHSYKRTERCSGVVATRRTTNPLQMISDLRKTRWRVSYAGKAGDARYPNP 1836
+NRAF+TGSW H Y R ERCSG+VAT R TNPLQM+SDLRK+R +V+YAGK GDARYPNP
Sbjct: 485 INRAFATGSWSHPYIRNERCSGIVATLRRTNPLQMMSDLRKSRQQVAYAGKVGDARYPNP 544
Query: 1837 SFWGKLCFLSTTDGENCGFVKNLAATAIVSSKFTAPGLDKLVSCGMXXXXXXXXXXXXXX 2016
S+WGK+CF+ST DGENCG VKNLA TAIVSS+ P +D+ VSCGM
Sbjct: 545 SYWGKMCFMSTPDGENCGLVKNLAVTAIVSSRVVQPLIDRFVSCGMNKLDEISAKEIPKM 604
Query: 2017 XXVFLDGCWVGVCEDADSFVTNLREMRRKKQIHSQVEIKKDKHQ--KEVRIFCDVGRILR 2190
+FL+G W+G C D SFV LR MRR I QVEIK+DKHQ EVR+F D GRILR
Sbjct: 605 DKIFLNGDWIGSCTDPASFVMRLRCMRRANLIDPQVEIKRDKHQFPGEVRVFSDAGRILR 664
Query: 2191 PLLIVENLKKISNLKGGIRSFQSLMDXXXXXXXXXXXXXDCRTAWGIRYLFEKKDNQPIV 2370
PLL+VENL KI K +FQ+L+ D + AWGIR+LF + +
Sbjct: 665 PLLVVENLNKIRKSKDRHYTFQALLQQEIIEYIGVEEEEDIQCAWGIRHLFPSS-GEKVS 723
Query: 2371 NYTHCEXXXXXXXXXXCGIIPFANHNLARRVLYQAEKHSQQAIGFSTTNPNIRVDTLTHQ 2550
YTHCE CG+IPFANHN ARRVLYQ+EKHSQQAIG+STTNP RVDT +HQ
Sbjct: 724 GYTHCELDLSFLLGLSCGLIPFANHNFARRVLYQSEKHSQQAIGYSTTNPLTRVDTHSHQ 783
Query: 2551 LYYPQKPLCRTVLAECLGEADLSLGRSEGIARPEYFNGQCAIVAVNVHLGYNQEDSIVIN 2730
LYYPQ+PL +TV A+C+G +D ++GR + ARPEYFNGQ AIVAVNVH G+NQEDS+V+N
Sbjct: 784 LYYPQRPLFKTVTADCIGRSDYTIGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMN 843
Query: 2731 RSSLERGMFRSEHLRSYKADIENVEITKFKKLKDKVEFGKMQSKKGRVDSLDDDGFPYIG 2910
R+SLERGMFR+EH+RSYKA++E E K KLK+KV+FGKMQSK+GRVD+LDDDG PY+G
Sbjct: 844 RASLERGMFRTEHIRSYKAEVETKEPIKRLKLKEKVDFGKMQSKRGRVDNLDDDGLPYVG 903
Query: 2911 ANLHSGDIVIGKVAESGEDYGTKLKHTEKGMVHKVVLSANDEGKSFAAVTLREIRSPCVG 3090
A+L SGDIVIGKV+ESGED+ K+KHTEKGMV +V+LSANDEGK+FA VTLR++RSPCVG
Sbjct: 904 ASLQSGDIVIGKVSESGEDHSIKMKHTEKGMVQRVLLSANDEGKNFAVVTLRQVRSPCVG 963
Query: 3091 DKFSSMHGQKGVIGLLESQENFPFTRQGIVPDIVINPHAFPTRQTPGQLLEAALAKGIAC 3270
DKFSSMHGQKGVIG LESQENFPFT QGIVPD+VINPHAFPTRQTPGQLLEAAL KGIA
Sbjct: 964 DKFSSMHGQKGVIGFLESQENFPFTCQGIVPDVVINPHAFPTRQTPGQLLEAALGKGIAL 1023
Query: 3271 GGTTKYATPFTTPSIDVITEQLHRAGYQRWGSERFLSGRTGEMMKSLIFIGPTFYQRLTH 3450
GG +YATPFT S++VI+EQLH+AG+ R G+E ++GRTGE M SLIF+GP FYQRLTH
Sbjct: 1024 GGAMRYATPFTPASLEVISEQLHKAGFSRGGAESVINGRTGERMHSLIFMGPNFYQRLTH 1083
Query: 3451 MAEDKVKFRNIGPVHPVTRQPVADRKRFGGVKFGEMERDCMLAHGAAANLHERLFLLSDL 3630
MAEDKVKFRN GPVHP+TRQPVADRKRFGGVKFGEMERDC+LAHGAAANLHERLF+LSD
Sbjct: 1084 MAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDF 1143
Query: 3631 SQMHICQSCKRVANVIQRPVQGGNKIRAPYCCFCKSGENIVRVNVPYGAKLLYQELFSMG 3810
SQMHIC++C+RVANV+ R V GG +IR PYC FC+S EN VR+ VPYGAKLLYQELF MG
Sbjct: 1144 SQMHICRTCERVANVVMRGVPGGKRIRGPYCGFCRSSENTVRIAVPYGAKLLYQELFCMG 1203
Query: 3811 ICLKFETEIC 3840
ICLKF+TEIC
Sbjct: 1204 ICLKFQTEIC 1213
>gb|EMS61833.1| DNA-directed RNA polymerase D subunit 2a [Triticum urartu]
Length = 1269
Score = 1545 bits (4000), Expect = 0.0
Identities = 754/1201 (62%), Positives = 923/1201 (76%), Gaps = 7/1201 (0%)
Frame = +1
Query: 253 MEGEQSPNGSDADME-FTMEDFVNEKDKGESMNLDSPSKEMDN---LGANVGGLEKFCKE 420
M+ + D D E +M+ +N K + S E + ++G LEKFCKE
Sbjct: 35 MDDSNGQSSMDVDREQLSMDADMNGKPSSDGDGKGKYSSESHAEVPIDMSLGSLEKFCKE 94
Query: 421 AARAFFTEQGFISHQINSYNDFIDHGLQDLFDSIGEVTVDPDYDPSKKRGFEWRYASVTF 600
A+R+FF E G ISHQINSYN+F+ HGLQ+LFDS+GEVTV+P YD SKK W++A + F
Sbjct: 95 ASRSFFDEFGLISHQINSYNEFVSHGLQELFDSLGEVTVEPSYDLSKKGPGGWKHAVIRF 154
Query: 601 GKVRVEKPTFWTGGADVAEECVKLLPRHARLQHMTYSAQMKVEVRVQVYIQEKSDKAKTG 780
G+V++EKP FW+G DV EE +KL PRHARLQ+MTYS++M+VEV +Q+Y EKSDK+KT
Sbjct: 155 GRVKLEKPVFWSGRDDVDEESLKLKPRHARLQNMTYSSKMEVEVHIQIYSMEKSDKSKTE 214
Query: 781 KDSYIQKRILSDEKREIIIGRIPVMVKSNLCWLHTLDKSDCFFDFGGYFLVKGAEKAFIA 960
KD + KR+L DE + IGR+PVMV SNLCWL L +SDC +D GGYFL++G EK FIA
Sbjct: 215 KDPFGHKRVLMDETHVVNIGRLPVMVNSNLCWLRELRESDCLYDSGGYFLIRGMEKIFIA 274
Query: 961 QEERCTTRLWVAEKPSWTITYQSEMRRRGNFNVKLVESSAEG-FSGEKVVNGSFLFAQMP 1137
QE+RC TR+W+A++P WT++Y SE++RR + VKL++S+ FSG K+++ SFL+A MP
Sbjct: 275 QEQRCLTRIWIADRPVWTVSYLSEIKRRRIY-VKLIDSTKNNDFSGSKIISISFLYANMP 333
Query: 1138 VWIMFFALGASSDKEVFQMIDLEGCQSNMVNILRATIRDAEGKCCDFRKGEKAKEFVYEQ 1317
+W+MFFALG SSDKE F MID+ C ++++N + ATI +++ C FRK +KA++ V +
Sbjct: 334 IWLMFFALGVSSDKEAFDMIDMGDCDASVINAISATISESDELCEGFRKSDKARQCVDDL 393
Query: 1318 LKSTKFPPSESLDDCINAFLFPKVVGHKQKAFFLGYMVKCLLLACFGKRKCDNKDDFXXX 1497
+KS+KFPP ES DD I +LFP + G++ KA FLGYMVKCLL+A GKR+CDNKDDF
Sbjct: 394 VKSSKFPPGESFDDYIAKYLFPGIKGNRNKALFLGYMVKCLLMAFTGKRRCDNKDDFRNK 453
Query: 1498 XXXXXXXXXXXXMWSHVRHAQRSMVRAMQRDLRGDRDLQFIERYLDASIITNGLNRAFST 1677
+ +H+RHA+R MV+AMQRDL DRDL+F RYLDASIITNG+NRAF+T
Sbjct: 454 RLELPGQLLGRELRAHLRHAERLMVKAMQRDLNSDRDLEFPTRYLDASIITNGINRAFAT 513
Query: 1678 GSWCHSYKRTERCSGVVATRRTTNPLQMISDLRKTRWRVSYAGKAGDARYPNPSFWGKLC 1857
GSWCH YKR ERCSG+VAT R TNPLQM+SDLRK+R +V+YAGKAGDARYPNPS+WGK+C
Sbjct: 514 GSWCHPYKRNERCSGIVATLRRTNPLQMMSDLRKSRQQVAYAGKAGDARYPNPSYWGKMC 573
Query: 1858 FLSTTDGENCGFVKNLAATAIVSSKFTAPGLDKLVSCGMXXXXXXXXXXXXXXXXVFLDG 2037
F+ST DGENCG VKNLA TAIVSS+ P +D+ VSCGM +FL+G
Sbjct: 574 FMSTPDGENCGLVKNLAVTAIVSSRVAQPLIDRFVSCGMNKLDEIPAKQIPKMDKIFLNG 633
Query: 2038 CWVGVCEDADSFVTNLREMRRKKQIHSQVEIKKDKHQK--EVRIFCDVGRILRPLLIVEN 2211
WVG C D SFV LR MRR I QVEIK+DKHQ EVR+F D GR+LRPLL+VEN
Sbjct: 634 DWVGSCADPASFVMRLRCMRRGGLIDPQVEIKRDKHQSPGEVRVFSDAGRLLRPLLVVEN 693
Query: 2212 LKKISNLKGGIRSFQSLMDXXXXXXXXXXXXXDCRTAWGIRYLFEKKDNQPIVNYTHCEX 2391
L KI+ KG SFQ+LM D + AWGIR+LF+ ++ + YTHCE
Sbjct: 694 LNKITKRKGSPYSFQALMQQEIIEFIGVEEEEDIQCAWGIRHLFQSSGDE-VSGYTHCEL 752
Query: 2392 XXXXXXXXXCGIIPFANHNLARRVLYQAEKHSQQAIGFSTTNPNIRVDTLTHQLYYPQKP 2571
C +IPFANHN ARRVLYQAEKHSQQAIG+STTNP RVDTL+HQLYYPQ+P
Sbjct: 753 DLSFLLGLSCSLIPFANHNFARRVLYQAEKHSQQAIGYSTTNPLTRVDTLSHQLYYPQRP 812
Query: 2572 LCRTVLAECLGEADLSLGRSEGIARPEYFNGQCAIVAVNVHLGYNQEDSIVINRSSLERG 2751
L +TV A+C+G +D + GR + ARPEYFNGQ AIVAVN+H G+NQEDS+V+NR+SLERG
Sbjct: 813 LFKTVSADCIGRSDYTFGRKDDFARPEYFNGQNAIVAVNIHQGFNQEDSLVMNRASLERG 872
Query: 2752 MFRSEHLRSYKADIENVEITKFKKLKDKVEFGKMQSKKGRVDSLDDDGFPYIGANLHSGD 2931
MFR+E +RSYKA++E +K K+K+KV FGKM+SK+GRVD+LDDDG P++G++L GD
Sbjct: 873 MFRTELMRSYKAEVETKGPSKRLKMKEKVNFGKMESKRGRVDNLDDDGLPFVGSSLQIGD 932
Query: 2932 IVIGKVAESGEDYGTKLKHTEKGMVHKVVLSANDEGKSFAAVTLREIRSPCVGDKFSSMH 3111
I+IGKV+ESGED+ KLKHTEKGMV +V+LSANDEGK FA V+LR++RSPCVGDKFSSMH
Sbjct: 933 IIIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKHFAVVSLRQVRSPCVGDKFSSMH 992
Query: 3112 GQKGVIGLLESQENFPFTRQGIVPDIVINPHAFPTRQTPGQLLEAALAKGIACGGTTKYA 3291
GQKGV+G LESQENFPFT QGIVPDIVINPHAFPTRQTPGQLLEAAL KGIA GG KYA
Sbjct: 993 GQKGVVGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIALGGKIKYA 1052
Query: 3292 TPFTTPSIDVITEQLHRAGYQRWGSERFLSGRTGEMMKSLIFIGPTFYQRLTHMAEDKVK 3471
TPFTT +++VI+EQLH+ G+ R G+E L+G+TG+ M+ LIF GP FYQRL HMAEDKVK
Sbjct: 1053 TPFTTATVEVISEQLHKLGFSRGGAESVLNGQTGKRMQQLIFAGPNFYQRLIHMAEDKVK 1112
Query: 3472 FRNIGPVHPVTRQPVADRKRFGGVKFGEMERDCMLAHGAAANLHERLFLLSDLSQMHICQ 3651
FRN GPVHP+TRQPVADRKRFGGVKFGEMERDC+LAHGAAANLHERLF LSD S+M ICQ
Sbjct: 1113 FRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFTLSDFSEMRICQ 1172
Query: 3652 SCKRVANVIQRPVQGGNKIRAPYCCFCKSGENIVRVNVPYGAKLLYQELFSMGICLKFET 3831
+C+R ANVI RPV GG KIR PYC FCKS ENIV++ VPYGAKLLYQELFSMGICLKF+T
Sbjct: 1173 TCERGANVIMRPVSGGRKIRGPYCGFCKSSENIVKIAVPYGAKLLYQELFSMGICLKFQT 1232
Query: 3832 E 3834
E
Sbjct: 1233 E 1233
>ref|XP_003580654.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
[Brachypodium distachyon]
Length = 1236
Score = 1536 bits (3978), Expect = 0.0
Identities = 763/1204 (63%), Positives = 918/1204 (76%), Gaps = 6/1204 (0%)
Frame = +1
Query: 247 IDMEGEQSPNGSDADMEFTMEDFVNEK--DKGESMNLDSPSKEMDNLGANVGGLEKFCKE 420
ID EQS G D+D D + D S S E + ++ LEKFCKE
Sbjct: 35 IDDSNEQSSMGIDSDRSSMDVDMKGKSSLDGDGKGKYSSESHEEFPIDMSLTSLEKFCKE 94
Query: 421 AARAFFTEQGFISHQINSYNDFIDHGLQDLFDSIGEVTVDPDYDPSKKRGFEWRYASVTF 600
A+R+FF E G ISHQINSYNDFI HGLQ+LFDS+GEVTV+P YDPSKK WR+A + F
Sbjct: 95 ASRSFFDEIGLISHQINSYNDFISHGLQELFDSLGEVTVEPSYDPSKKGPGGWRHAIIKF 154
Query: 601 GKVRVEKPTFWTGGA-DVAEECVKLLPRHARLQHMTYSAQMKVEVRVQVYIQEKSDKAKT 777
GKV++++P FW+ D EE +KL PRHARLQ+MTYS++M+VE+ +QVY EKSDKAKT
Sbjct: 155 GKVKLQEPVFWSDKCEDKYEEALKLKPRHARLQNMTYSSKMEVEMNIQVYSMEKSDKAKT 214
Query: 778 GKDSYIQKRILSDEKREIIIGRIPVMVKSNLCWLHTLDKSDCFFDFGGYFLVKGAEKAFI 957
D + KR + +E + +GR+PVMV SNLCWLH L +SDC FD GGYFL+KG EK FI
Sbjct: 215 ENDHFGHKRDIINETHWVSVGRLPVMVNSNLCWLHKLGESDCLFDSGGYFLIKGMEKIFI 274
Query: 958 AQEERCTTRLWVAEKPSWTITYQSEMRRRGNFNVKLVESS-AEGFSGEKVVNGSFLFAQM 1134
AQE+RC TR+WV ++P WT++Y SE++R+ + VKL++S+ + FS K+++ SFL+A M
Sbjct: 275 AQEQRCLTRIWVDDRPCWTVSYMSEIKRKRTY-VKLIDSTKSNDFSESKIISISFLYANM 333
Query: 1135 PVWIMFFALGASSDKEVFQMIDLEGCQSNMVNILRATIRDAEGKCCDFRKGEKAKEFVYE 1314
PVW+MFFALG SSDKEVF +ID + ++++N++ ATI ++ C FRK +KA+++V +
Sbjct: 334 PVWLMFFALGISSDKEVFDIIDFKDSDASVINMISATISESNELCEGFRKSDKARQYVDD 393
Query: 1315 QLKSTKFPPSESLDDCINAFLFPKVVGHKQKAFFLGYMVKCLLLACFGKRKCDNKDDFXX 1494
+KS+KFPP+ES DD + FLFP + G++ KAFFLGYMVK LL+A GK KCDN+D F
Sbjct: 394 LVKSSKFPPAESFDDYVARFLFPGISGNRNKAFFLGYMVKYLLMAFTGKLKCDNRDAFRN 453
Query: 1495 XXXXXXXXXXXXXMWSHVRHAQRSMVRAMQRDLRGDRDLQFIERYLDASIITNGLNRAFS 1674
+ +H+RHA+R MV+AMQRDL DRDLQF YLD +IITNG+NRAF+
Sbjct: 454 KRLELPGELLGRELRAHLRHAERLMVKAMQRDLNSDRDLQFPLGYLDPTIITNGINRAFA 513
Query: 1675 TGSWCHSYKRTERCSGVVATRRTTNPLQMISDLRKTRWRVSYAGKAGDARYPNPSFWGKL 1854
TGSWCH YKR ERCSGVVAT R TNPLQM+SDLRK+R +V+YAGKAGDARYPNPS+WGK+
Sbjct: 514 TGSWCHPYKRNERCSGVVATLRRTNPLQMMSDLRKSRQQVAYAGKAGDARYPNPSYWGKM 573
Query: 1855 CFLSTTDGENCGFVKNLAATAIVSSKFTAPGLDKLVSCGMXXXXXXXXXXXXXXXXVFLD 2034
CF+ST DGENCG VKNLA TAIVSS+ P +D+ VSCGM +FL+
Sbjct: 574 CFMSTPDGENCGLVKNLAVTAIVSSRVVQPLIDRFVSCGMNKLDEIPAGQIPKMDKIFLN 633
Query: 2035 GCWVGVCEDADSFVTNLREMRRKKQIHSQVEIKKDKHQ--KEVRIFCDVGRILRPLLIVE 2208
G WVG C D SFV LR MRR I QVEIK+DKHQ EVR+F D GRILRPLL+VE
Sbjct: 634 GNWVGSCTDPASFVMRLRCMRRGNLIDPQVEIKRDKHQIPGEVRVFSDAGRILRPLLVVE 693
Query: 2209 NLKKISNLKGGIRSFQSLMDXXXXXXXXXXXXXDCRTAWGIRYLFEKKDNQPIVNYTHCE 2388
NL KI K G SFQ+LM D AWGIR+LF + YTHCE
Sbjct: 694 NLNKIRKPKDGSYSFQALMQQEIIEYIGVEEEEDILCAWGIRHLFPGS-GEDFSGYTHCE 752
Query: 2389 XXXXXXXXXXCGIIPFANHNLARRVLYQAEKHSQQAIGFSTTNPNIRVDTLTHQLYYPQK 2568
C +IPFANHN ARRVLYQ+EKHSQQAIG+STTN RVDTL+HQLYYPQ+
Sbjct: 753 LDLSFLLGLSCSLIPFANHNFARRVLYQSEKHSQQAIGYSTTNQLTRVDTLSHQLYYPQR 812
Query: 2569 PLCRTVLAECLGEADLSLGRSEGIARPEYFNGQCAIVAVNVHLGYNQEDSIVINRSSLER 2748
PL +TV A+C+G +D ++GR++ ARPEYFNGQ AIVAVNVH G+NQEDS+V+NR+SLER
Sbjct: 813 PLFKTVTADCIGRSDYTIGRTDDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLER 872
Query: 2749 GMFRSEHLRSYKADIENVEITKFKKLKDKVEFGKMQSKKGRVDSLDDDGFPYIGANLHSG 2928
GMFR+E +RSYKAD+E E K KLK+KV+FGKMQSK+GRVDSLDDDG PY+GA+L SG
Sbjct: 873 GMFRTELIRSYKADVETKEPAKRLKLKEKVDFGKMQSKRGRVDSLDDDGLPYVGASLQSG 932
Query: 2929 DIVIGKVAESGEDYGTKLKHTEKGMVHKVVLSANDEGKSFAAVTLREIRSPCVGDKFSSM 3108
DIVIGKV+ESGED+ KLKHTEKGMV +V+LSANDE K+FA VTLR++RSPCVGDKFSSM
Sbjct: 933 DIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEEKNFAVVTLRQVRSPCVGDKFSSM 992
Query: 3109 HGQKGVIGLLESQENFPFTRQGIVPDIVINPHAFPTRQTPGQLLEAALAKGIACGGTTKY 3288
HGQKGVIG LESQENFPFT QGIVPDIVINPHAFPTRQTPGQLLEAAL KGIA G +Y
Sbjct: 993 HGQKGVIGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIALGSAMRY 1052
Query: 3289 ATPFTTPSIDVITEQLHRAGYQRWGSERFLSGRTGEMMKSLIFIGPTFYQRLTHMAEDKV 3468
ATPFTT S++VI+EQLH+AG+ G+E L+G+TGE M SLIF+GP FYQRLTHMAEDKV
Sbjct: 1053 ATPFTTASLEVISEQLHKAGFSGGGTESVLNGQTGERMHSLIFMGPNFYQRLTHMAEDKV 1112
Query: 3469 KFRNIGPVHPVTRQPVADRKRFGGVKFGEMERDCMLAHGAAANLHERLFLLSDLSQMHIC 3648
KFRN GPVHP+TRQPVADRKRFGGVKFGEMERDC+LAHGAAANLHERLF+LSD +QMHIC
Sbjct: 1113 KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFAQMHIC 1172
Query: 3649 QSCKRVANVIQRPVQGGNKIRAPYCCFCKSGENIVRVNVPYGAKLLYQELFSMGICLKFE 3828
Q+C+R ANV+ R + GG KIR PYC FC+S EN VR+ VPYGAKLLYQELFSMGICLKF+
Sbjct: 1173 QTCQRAANVVMRAIPGGKKIRGPYCGFCRSSENKVRIAVPYGAKLLYQELFSMGICLKFK 1232
Query: 3829 TEIC 3840
TE+C
Sbjct: 1233 TEVC 1236
>gb|EMS59628.1| DNA-directed RNA polymerase D subunit 2a [Triticum urartu]
Length = 1225
Score = 1511 bits (3913), Expect = 0.0
Identities = 747/1197 (62%), Positives = 909/1197 (75%), Gaps = 2/1197 (0%)
Frame = +1
Query: 250 DMEGEQSPNGSDADMEFTMEDFVNEKDKGESMNLDSPSKEMDNLGANVGGLEKFCKEAAR 429
D +GEQ P+G + M+ ++ + D+G+ + PS ++ + N+ LEKFCKEAAR
Sbjct: 41 DAKGEQQPSGGLSPMDVDLKGIPSMVDEGKLKSSSDPSAQVP-IDFNIESLEKFCKEAAR 99
Query: 430 AFFTEQGFISHQINSYNDFIDHGLQDLFDSIGEVTVDPDYDPSKKRGFEWRYASVTFGKV 609
+FFTE+G +SHQINSYNDFI HGLQ+L DS+GE+TVDPDYDPSK G +WR+A+V FG+V
Sbjct: 100 SFFTEKGLVSHQINSYNDFISHGLQELVDSLGEITVDPDYDPSKSVG-DWRHATVKFGRV 158
Query: 610 RVEKPTFWTGGADVAEECVKLLPRHARLQHMTYSAQMKVEVRVQVYIQEKSDKAKTGKDS 789
+EKPTFW +++ E+ ++L P HARLQ+MTYS++M VE+ VQVY +SDK+KTGKD
Sbjct: 159 ELEKPTFWADNSELDEQKLRLKPVHARLQNMTYSSKMNVEMTVQVYSLNQSDKSKTGKDP 218
Query: 790 YIQKR-ILSDEKREIIIGRIPVMVKSNLCWLHTLDKSDCFFDFGGYFLVKGAEKAFIAQE 966
YIQK+ ILS E + + IGR+PVMVKS+LCWL+ L +++C FD+GGYFL+KG EKAFIA+E
Sbjct: 219 YIQKKLILSPETKWVTIGRLPVMVKSSLCWLYELQETECQFDYGGYFLIKGTEKAFIAEE 278
Query: 967 ERCTTRLWVAEKPSWTITYQSEMRRRGNFNVKLVESSA-EGFSGEKVVNGSFLFAQMPVW 1143
RC +R+WV PSW +Y S++RR + VKLV S +GF KV+N SFL A MP+W
Sbjct: 279 GRCLSRIWVTNSPSWDASYLSQIRREKIY-VKLVPSKENDGF--HKVINLSFLGATMPIW 335
Query: 1144 IMFFALGASSDKEVFQMIDLEGCQSNMVNILRATIRDAEGKCCDFRKGEKAKEFVYEQLK 1323
IMFFALG S+DKE F MID++ C +++VNIL ATIR + +C FR G +A+++V E ++
Sbjct: 336 IMFFALGVSTDKEAFDMIDIQDCDASLVNILSATIRQSHEQCEGFRGGGRARQYVDEYIR 395
Query: 1324 STKFPPSESLDDCINAFLFPKVVGHKQKAFFLGYMVKCLLLACFGKRKCDNKDDFXXXXX 1503
TKFPP ES D + +LFP+V ++ KA FLGYM+KCLL+A G+RKCDNKDDF
Sbjct: 396 KTKFPPEESFDGYVGRYLFPEVSDNRCKALFLGYMIKCLLMAYCGRRKCDNKDDFRNKRL 455
Query: 1504 XXXXXXXXXXMWSHVRHAQRSMVRAMQRDLRGDRDLQFIERYLDASIITNGLNRAFSTGS 1683
+W H+RHA R MV+ MQ+ L GD DLQ ++ Y+DASIITNGLNRAFSTGS
Sbjct: 456 DLACQLLRRELWGHLRHAARRMVKVMQKHLSGDGDLQVLDHYVDASIITNGLNRAFSTGS 515
Query: 1684 WCHSYKRTERCSGVVATRRTTNPLQMISDLRKTRWRVSYAGKAGDARYPNPSFWGKLCFL 1863
WCH YK RCSG+VAT R TNPLQM+SD+RKTR +Y G AGDARYPNPS+WGKLCF+
Sbjct: 516 WCHPYKYG-RCSGIVATLRRTNPLQMMSDMRKTRQLSAYWGSAGDARYPNPSYWGKLCFM 574
Query: 1864 STTDGENCGFVKNLAATAIVSSKFTAPGLDKLVSCGMXXXXXXXXXXXXXXXXVFLDGCW 2043
ST DGE CGFVKNLAA+A+VSS P +D VSCGM +FL+G
Sbjct: 575 STPDGEKCGFVKNLAASAVVSSVMREPLIDLFVSCGMKKLDEVLVQDIGGTEKIFLNGDL 634
Query: 2044 VGVCEDADSFVTNLREMRRKKQIHSQVEIKKDKHQKEVRIFCDVGRILRPLLIVENLKKI 2223
VGV FVTNLR MRR KQI QVEIK+DK KEV +F D GRILRPLLIVENLK I
Sbjct: 635 VGVSAYPGKFVTNLRNMRRSKQIDPQVEIKRDKLHKEVHVFSDAGRILRPLLIVENLKSI 694
Query: 2224 SNLKGGIRSFQSLMDXXXXXXXXXXXXXDCRTAWGIRYLFEKKDNQPIVNYTHCEXXXXX 2403
+ GG SFQ LMD D + A GI+ LF + ++ Y+HCE
Sbjct: 695 AKPNGGSYSFQQLMDQNIIELIGAEEEEDIQCACGIKDLFSGDQKEGLLYYSHCELDPSF 754
Query: 2404 XXXXXCGIIPFANHNLARRVLYQAEKHSQQAIGFSTTNPNIRVDTLTHQLYYPQKPLCRT 2583
CGIIPF NHN A+RVL QAEK SQQAIG+S TN RVDTL HQ+YYPQ+PL +T
Sbjct: 755 LLGLSCGIIPFVNHNAAKRVLMQAEKISQQAIGYSPTNSQYRVDTLFHQMYYPQRPLFKT 814
Query: 2584 VLAECLGEADLSLGRSEGIARPEYFNGQCAIVAVNVHLGYNQEDSIVINRSSLERGMFRS 2763
VL++CLG+ G+ RPEYFNGQ AIV+VNVH G+NQEDS+V NR+SLERGMFR+
Sbjct: 815 VLSDCLGK--------RGLTRPEYFNGQNAIVSVNVHQGFNQEDSLVFNRASLERGMFRT 866
Query: 2764 EHLRSYKADIENVEITKFKKLKDKVEFGKMQSKKGRVDSLDDDGFPYIGANLHSGDIVIG 2943
H +SYKA IEN E+T+ K ++K++FGK QSKKGRVDSLD DG PY+GA+L +GDIVIG
Sbjct: 867 LHFKSYKAQIENKEVTRRLKHREKIDFGKTQSKKGRVDSLDIDGLPYVGASLQTGDIVIG 926
Query: 2944 KVAESGEDYGTKLKHTEKGMVHKVVLSANDEGKSFAAVTLREIRSPCVGDKFSSMHGQKG 3123
KV+ESGED+ KL HTE+GMV KVVLSAND+GK+ A VTLR++R PCVGDKF+SMHGQKG
Sbjct: 927 KVSESGEDHSRKLMHTERGMVDKVVLSANDDGKNSAVVTLRQVRQPCVGDKFASMHGQKG 986
Query: 3124 VIGLLESQENFPFTRQGIVPDIVINPHAFPTRQTPGQLLEAALAKGIACGGTTKYATPFT 3303
V+GLL+SQENFPFT QGIVPDIVINPH FPTRQTPGQLLEAAL KGIA GG +++ATPFT
Sbjct: 987 VVGLLDSQENFPFTCQGIVPDIVINPHGFPTRQTPGQLLEAALGKGIALGGMSRFATPFT 1046
Query: 3304 TPSIDVITEQLHRAGYQRWGSERFLSGRTGEMMKSLIFIGPTFYQRLTHMAEDKVKFRNI 3483
TPS+DVITEQLH+AG+ RWG E L+G GE M+SL+F+GPT+YQRLTHMAEDKVK RN
Sbjct: 1047 TPSVDVITEQLHKAGFSRWGGESVLNGHNGERMRSLVFMGPTYYQRLTHMAEDKVKLRNT 1106
Query: 3484 GPVHPVTRQPVADRKRFGGVKFGEMERDCMLAHGAAANLHERLFLLSDLSQMHICQSCKR 3663
GPVHP+TRQPV DRKRFGGVKFGEMERDC+LAHGA ANL ERLF LSD+SQ+HICQ C+R
Sbjct: 1107 GPVHPLTRQPVVDRKRFGGVKFGEMERDCLLAHGATANLQERLFTLSDVSQLHICQVCER 1166
Query: 3664 VANVIQRPVQGGNKIRAPYCCFCKSGENIVRVNVPYGAKLLYQELFSMGICLKFETE 3834
VANV+ RPV+GG K+R PYC FCKS ENI+R+ VPYGAKLLYQELFSMGICLKFETE
Sbjct: 1167 VANVVLRPVEGGRKVRGPYCGFCKSAENILRIKVPYGAKLLYQELFSMGICLKFETE 1223
>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
vinifera]
Length = 1198
Score = 1477 bits (3823), Expect = 0.0
Identities = 742/1200 (61%), Positives = 903/1200 (75%), Gaps = 13/1200 (1%)
Frame = +1
Query: 280 SDADMEFTMEDFVNEK-DKGESMNLDSP---SKEMDNLGANVGGLEKFCKEAARAFFTEQ 447
SDA + M + EK G M +D S E+D+L N L+ FCK+ A +FF E
Sbjct: 4 SDAKGDLGMSSSMGEKLSNGVQMEIDDDLMGSIEIDDL--NKEYLKTFCKKVAVSFFNEY 61
Query: 448 GFISHQINSYNDFIDHGLQDLFDSIGEVTVDPDYDPSKKRGFEWRYASVTFGKVRVEKPT 627
G I HQINS+NDFI +G+Q +FDS GE+ V+P YDPSK+ +WRYASV FGKV +E+P
Sbjct: 62 GLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKRGEGDWRYASVRFGKVTLERPR 121
Query: 628 FWTGGADVAEECVKLLPRHARLQHMTYSAQMKVEVRVQVYIQE--KSDKAKTGKDS-YIQ 798
W G +D +E + LPRHARLQ+MTYS++MK +V QVY Q+ +SDK KTGKD+ Y++
Sbjct: 122 VWAGESD-GKESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKLVRSDKYKTGKDNKYVE 180
Query: 799 KRILSDEKREIIIGRIPVMVKSNLCWLHTLDKSDCFFDFGGYFLVKGAEKAFIAQEERCT 978
K+++ ++ R+I+IGRIPVMVKS LCW++ +++ DC +D GGYFL+KGAEK FIAQE+ C
Sbjct: 181 KKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFLIKGAEKTFIAQEQICL 240
Query: 979 TRLWVAEKPSWTITYQSEMRRRGNFNVKLVESSAEGF-SGEKVVNGSFLFAQMPVWIMFF 1155
RLWV+ P+W + Y+ +R+ + VKL E GEKV+ F ++P+WI+FF
Sbjct: 241 KRLWVSSNPTWMVAYRPIWKRKRVY-VKLEPPKDENNRGGEKVLTVYFSSTEIPIWILFF 299
Query: 1156 ALGASSDKEVFQMIDLEGCQSNMVNILRATI----RDAEGKCCDFRKGEKAKEFVYEQLK 1323
ALGASSDKEV +ID + + NIL A+I R+AE K FR+ A FV + +K
Sbjct: 300 ALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKKGMYFRRQGNAISFVDKLVK 359
Query: 1324 STKFPPSESLDDCINAFLFPKVVGHKQKAFFLGYMVKCLLLACFGKRKCDNKDDFXXXXX 1503
S KFPP ES+ +CI+ +LFP G KQKA FLGYMVKCLL A G+RKCDN+DDF
Sbjct: 360 SCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRL 419
Query: 1504 XXXXXXXXXXMWSHVRHAQRSMVRAMQRDLRGDRDLQFIERYLDASIITNGLNRAFSTGS 1683
+ H+RHA+R MV+AMQR+L GDRDL+ IE YLDASIITNGL+RAFSTG
Sbjct: 420 ELAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDASIITNGLSRAFSTGQ 479
Query: 1684 WCHSYKRTERCSGVVATRRTTNPLQMISDLRKTRWRVSYAGKAGDARYPNPSFWGKLCFL 1863
W H +KR ER SGVVAT R TNPLQM +D+RKTR +V Y GK GDARYP+PS WGK+CFL
Sbjct: 480 WSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFL 539
Query: 1864 STTDGENCGFVKNLAATAIVSSKFTAPGLDKLVSCGMXXXXXXXXXXXXXXXXVFLDGCW 2043
ST DGENCG VKNLA T +VS++ P +DKL CGM VFLDG W
Sbjct: 540 STPDGENCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLVDDTSTKLSGKNKVFLDGDW 599
Query: 2044 VGVCEDADSFVTNLREMRRKKQIHSQVEIKKDKHQKEVRIFCDVGRILRPLLIVENLKKI 2223
VGVCED SFV LR RR K++ QVEIK+D+ Q EVRIF D GRILRPLL+VENLKK+
Sbjct: 600 VGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRILRPLLVVENLKKV 659
Query: 2224 SNLKGGIRSFQSLMDXXXXXXXXXXXXXDCRTAWGIRYLFEKKDNQPIVNYTHCEXXXXX 2403
KG +FQSL+D DC TAWGI+YL + D+ P V YTHCE
Sbjct: 660 KTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLLKGHDDPP-VKYTHCELDMSF 718
Query: 2404 XXXXXCGIIPFANHNLARRVLYQAEKHSQQAIGFSTTNPNIRVDTLTHQLYYPQKPLCRT 2583
CGIIP+ANH+ ARRVLYQ+EKHSQQAIGFSTTNPNIRVDTL+HQLYYPQ+PL RT
Sbjct: 719 LLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRT 778
Query: 2584 VLAECLGEADLSLGRSEGIARPEYFNGQCAIVAVNVHLGYNQEDSIVINRSSLERGMFRS 2763
++++CLG+ S G + RPEYFNGQ AIVAVNVHLGYNQEDS+V+NR+SLERGMFRS
Sbjct: 779 MISDCLGKPGYSEGHKGIVPRPEYFNGQIAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 838
Query: 2764 EHLRSYKADIENVE-ITKFKKLKDKVEFGKMQSKKGRVDSLDDDGFPYIGANLHSGDIVI 2940
EH+RSYK++++N E + K +K +D V FGKMQSK GRVDSLDDDGFP+IGANL +GDIVI
Sbjct: 839 EHIRSYKSEVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFPFIGANLQNGDIVI 898
Query: 2941 GKVAESGEDYGTKLKHTEKGMVHKVVLSANDEGKSFAAVTLREIRSPCVGDKFSSMHGQK 3120
G+ AESG D+ KLKHTE+GMV KVV+SAND+GK+FA V+LR++R+PC+GDKFSSMHGQK
Sbjct: 899 GRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQVRTPCLGDKFSSMHGQK 958
Query: 3121 GVIGLLESQENFPFTRQGIVPDIVINPHAFPTRQTPGQLLEAALAKGIACGGTTKYATPF 3300
GV+G LESQENFPFT QGIVPDIVINPHAFP+RQTPGQLLEAAL KGIACGG ++ATPF
Sbjct: 959 GVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGLLRHATPF 1018
Query: 3301 TTPSIDVITEQLHRAGYQRWGSERFLSGRTGEMMKSLIFIGPTFYQRLTHMAEDKVKFRN 3480
+T S+D I +QLHRAG+ RWG ER +GRTGEM++SLIF+GPTFYQRL HMAEDKVKFRN
Sbjct: 1019 STLSVDAIADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGPTFYQRLIHMAEDKVKFRN 1078
Query: 3481 IGPVHPVTRQPVADRKRFGGVKFGEMERDCMLAHGAAANLHERLFLLSDLSQMHICQSCK 3660
GPVHP+TRQPV+DRKRFGG+KFGEMERDC++AHGAAANLHERLF LSD + MHIC+ CK
Sbjct: 1079 TGPVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSAYMHICRRCK 1138
Query: 3661 RVANVIQRPVQGGNKIRAPYCCFCKSGENIVRVNVPYGAKLLYQELFSMGICLKFETEIC 3840
++NVIQR V GG K+R PYC +C+S E IV+VNVPYGAKLL QELFSMGI LKFET++C
Sbjct: 1139 NISNVIQRSVAGGRKVRGPYCRYCESSEEIVKVNVPYGAKLLCQELFSMGISLKFETQLC 1198
>ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
[Solanum tuberosum]
Length = 1217
Score = 1476 bits (3821), Expect = 0.0
Identities = 741/1204 (61%), Positives = 903/1204 (75%), Gaps = 11/1204 (0%)
Frame = +1
Query: 262 EQSPNGSDADMEFTMEDF--VNEKDKGESMNLDSPSKEMDNLGANVGG--LEKFCKEAAR 429
E+ NGS A M+F ++D V++ D E + D L +G L+ FCK+A+
Sbjct: 17 EKISNGS-ARMDFDIDDLFEVDDDDWDEDEDEDEDDSHDMVLIKELGETYLKNFCKKAST 75
Query: 430 AFFTEQGFISHQINSYNDFIDHGLQDLFDSIGEVTVDPDYDPSKKRGFEWRYASVTFGKV 609
FF + G ISHQINSYNDFI++G+Q +FDS+GE+ V+P YDPSK+ +W++ASV FGKV
Sbjct: 76 GFFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKRGDGDWKHASVKFGKV 135
Query: 610 RVEKPTFWTG---GADVAEECVKLLPRHARLQHMTYSAQMKVEVRVQVYIQE--KSDKAK 774
+E+P FW G AD +E + LLPRHARLQ+MTYSA++ VE VQVY ++ +SDK K
Sbjct: 136 TLERPKFWAGEKFSADGGKEYLDLLPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFK 195
Query: 775 TGKDSYIQKRILSDEKREIIIGRIPVMVKSNLCWLHTLDKSDCFFDFGGYFLVKGAEKAF 954
TG D ++ K ++KR+++IGRIPVMV S LCW++ +DK DC FD GGYF+VKGAEK F
Sbjct: 196 TGVDQFVDKECEVEDKRDVLIGRIPVMVNSELCWMNGVDKLDCEFDHGGYFIVKGAEKTF 255
Query: 955 IAQEERCTTRLWVAEKPSWTITYQSEMRRRGNFNVKLVES-SAEGFSGEKVVNGSFLFAQ 1131
IAQE+ C RLWV+ P+W + Y+ +R+ + +KL E+ E G + ++ A+
Sbjct: 256 IAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVY-IKLTETLKLEHIKGGEKALSVYILAE 314
Query: 1132 MPVWIMFFALGASSDKEVFQMIDLEGCQSNMVNILRATIRDAEGKCCDFRKGEKAKEFVY 1311
MP+W++FFALG SSD+EV +ID++ + +VNIL A+I +A+ C DFRKG+KA +V
Sbjct: 315 MPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCEDFRKGKKALAYVD 374
Query: 1312 EQLKSTKFPPSESLDDCINAFLFPKVVGHKQKAFFLGYMVKCLLLACFGKRKCDNKDDFX 1491
+K+ KFPP ES+++CINA+LFP + G KQKA FLGYMVKCLL + G+RK DN+DDF
Sbjct: 375 RLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHSFIGRRKVDNRDDFR 434
Query: 1492 XXXXXXXXXXXXXXMWSHVRHAQRSMVRAMQRDLRGDRDLQFIERYLDASIITNGLNRAF 1671
+ +H++HA+R MV+AMQRDL GDR +Q IE YLDASIITNGL+RAF
Sbjct: 435 NKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHYLDASIITNGLSRAF 494
Query: 1672 STGSWCHSYKRTERCSGVVATRRTTNPLQMISDLRKTRWRVSYAGKAGDARYPNPSFWGK 1851
STG WCH YKR ER SGVVAT R TNPLQM +D+RK+R +V+Y GK GDARYP+PS WGK
Sbjct: 495 STGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTGKVGDARYPHPSHWGK 554
Query: 1852 LCFLSTTDGENCGFVKNLAATAIVSSKFTAPGLDKLVSCGMXXXXXXXXXXXXXXXXVFL 2031
LCFLST DGENCG VKNLA+ +VS+ P L+ L CGM V L
Sbjct: 555 LCFLSTPDGENCGLVKNLASMGLVSTIILKPFLETLFRCGMQKLVDDCATSLHGKQKVLL 614
Query: 2032 DGCWVGVCEDADSFVTNLREMRRKKQIHSQVEIKKDKHQKEVRIFCDVGRILRPLLIVEN 2211
DG WVGVCED+ FV+ LR RR+ ++ QVE+K+D+ Q EVRIF D GRILRPLL+V N
Sbjct: 615 DGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRIFSDSGRILRPLLVVSN 674
Query: 2212 LKKISNLKGGIRSFQSLMDXXXXXXXXXXXXXDCRTAWGIRYLFEKKDNQPIVNYTHCEX 2391
LKKI LKGG FQSL+D DCRTAWG+ Y+ + P YTHCE
Sbjct: 675 LKKIKALKGGDYGFQSLLDNGIIEFIGPEEEEDCRTAWGVEYILKADKENPPAKYTHCEL 734
Query: 2392 XXXXXXXXXCGIIPFANHNLARRVLYQAEKHSQQAIGFSTTNPNIRVDTLTHQLYYPQKP 2571
CGIIPFANH+ ARRVLYQ+EKHSQQAIGFST NPN RVDT THQLYYPQ+P
Sbjct: 735 DMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNNRVDTNTHQLYYPQRP 794
Query: 2572 LCRTVLAECLGEADLSLGRSEGIARPEYFNGQCAIVAVNVHLGYNQEDSIVINRSSLERG 2751
L RT+LA+ LG+ + + + RPEYFNGQCAIVAVNVHLGYNQEDS+V+NR+SLERG
Sbjct: 795 LFRTMLADSLGKPKCTQYQKGMLPRPEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLERG 854
Query: 2752 MFRSEHLRSYKADIENVE-ITKFKKLKDKVEFGKMQSKKGRVDSLDDDGFPYIGANLHSG 2928
MFRSEH+RSYKA+++N E + K K++D V FGK QSK GRVDSLDDDGFP+IGANL SG
Sbjct: 855 MFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRVDSLDDDGFPFIGANLQSG 914
Query: 2929 DIVIGKVAESGEDYGTKLKHTEKGMVHKVVLSANDEGKSFAAVTLREIRSPCVGDKFSSM 3108
DI+IGK AESG D+ KLKHTE+GMV KV+LSANDEGK+FA V+LR++RSPC+GDKFSSM
Sbjct: 915 DIIIGKFAESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVVSLRQVRSPCLGDKFSSM 974
Query: 3109 HGQKGVIGLLESQENFPFTRQGIVPDIVINPHAFPTRQTPGQLLEAALAKGIACGGTTKY 3288
HGQKGV+G LESQENFPFT QGIVPDIVINPHAFP+RQTPGQLLEAAL KGIA GG KY
Sbjct: 975 HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGGQKY 1034
Query: 3289 ATPFTTPSIDVITEQLHRAGYQRWGSERFLSGRTGEMMKSLIFIGPTFYQRLTHMAEDKV 3468
ATPF+T S+D I EQL G+ RWG+ER +GRTGEM+ SLIF+GPTFYQRL HMAEDKV
Sbjct: 1035 ATPFSTLSVDAIMEQLQGRGFTRWGNERVYNGRTGEMVHSLIFMGPTFYQRLIHMAEDKV 1094
Query: 3469 KFRNIGPVHPVTRQPVADRKRFGGVKFGEMERDCMLAHGAAANLHERLFLLSDLSQMHIC 3648
KFRN GPVHP+TRQPVADRKRFGG+KFGEMERDC++AHGAAANLHERLF LSD SQMHIC
Sbjct: 1095 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHIC 1154
Query: 3649 QSCKRVANVIQRPVQGGNKIRAPYCCFCKSGENIVRVNVPYGAKLLYQELFSMGICLKFE 3828
CK +ANVIQR VQGG K+R P+C FC+S E+IV+VNVPYGAKLL QELFSMGI LKF+
Sbjct: 1155 GKCKNMANVIQRTVQGG-KVRGPFCRFCESVEDIVKVNVPYGAKLLCQELFSMGISLKFD 1213
Query: 3829 TEIC 3840
TEIC
Sbjct: 1214 TEIC 1217
>ref|XP_003571431.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
[Brachypodium distachyon]
Length = 1242
Score = 1474 bits (3815), Expect = 0.0
Identities = 731/1207 (60%), Positives = 900/1207 (74%), Gaps = 11/1207 (0%)
Frame = +1
Query: 250 DMEGEQSP----NGSDADMEFTMEDFVNEKDKGESMNLDSPSKEMDNLGANVGGLEKFCK 417
D +GEQ P +G + M ++ + +D+ E M+ P + + NV LEKFCK
Sbjct: 40 DAKGEQQPLADADGGLSPMNVDLKGIPSLEDEREVMSSSDPCVQAP-IDFNVATLEKFCK 98
Query: 418 EAARAFFTEQGFISHQINSYNDFIDHGLQDLFDSIGEVTVDPDYDPSKK-RGFEWRYASV 594
EAAR+FF+E G +SHQINSYNDFI HGLQ+L DS+GE+TV+PDYDPSKK WR+A++
Sbjct: 99 EAARSFFSETGLVSHQINSYNDFISHGLQELIDSVGEITVEPDYDPSKKAEAGAWRHATI 158
Query: 595 TFGKVRVEKPTFWTGGADVAEECVKLLPRHARLQHMTYSAQMKVEVRVQVYIQEKSDKAK 774
FG+V+ E+P FW ++ E +KL P+HARLQ+MTYS++M VE+ VQVY +SDK+K
Sbjct: 159 KFGRVKFEEPVFWVEDTELDEHTLKLKPKHARLQNMTYSSKMFVEMTVQVYSLMQSDKSK 218
Query: 775 TGKDSYIQKRILSDEKREIIIGRIPVMVKSNLCWLHTLDKSDCFFDFGGYFLVKGAEKAF 954
GK+ YIQKR + +E + + IGR+PVMVKSNLCWLH L K+DC FD+GGYFL+KG EKAF
Sbjct: 219 IGKNPYIQKRDILNETKWVSIGRLPVMVKSNLCWLHKLQKTDCQFDYGGYFLIKGMEKAF 278
Query: 955 IAQEERCTTRLWVAEKPSWTITYQSEMRRRGNFNVKLVESSAEGFSGEKVVNGSFLFAQM 1134
+A+E+RC +R+W+ + PSW +Y S+ +R + VKLV+S E K+V FL A M
Sbjct: 279 VAEEQRCLSRIWIKDHPSWDASYMSQNKRERIY-VKLVQSE-ESHGLRKLVRLFFLGATM 336
Query: 1135 PVWIMFFALGASSDKEVFQMIDLEGCQSNMVNILRATIRDAEGKCCDFRKGEKAKEFVYE 1314
P+WIMFFALG SSDKE F MID++ C +++VNI+ ATI++++ +C FR+G +A+++V E
Sbjct: 337 PIWIMFFALGVSSDKEAFDMIDIQDCDASLVNIISATIKESDEQCEGFRRGGRARQYVDE 396
Query: 1315 QLKSTKFPPSESLDDCINAFLFP-KVVGHKQKAFFLGYMVKCLLLACFGKRKCDNKDDFX 1491
+K TKFPP +S D + ++FP V ++ KAFFLGYMVKCLL+A G RKCD++ +F
Sbjct: 397 FIKKTKFPPEQSFDGYVGRYMFPGDVSDNRSKAFFLGYMVKCLLMAYSGHRKCDDRANFR 456
Query: 1492 XXXXXXXXXXXXXXMWSHVRHAQRSMVRAMQRDLRGDRDLQFIERYLDASIITNGLNRAF 1671
+W H+RHAQR MV+ MQR L GD DLQ ++ Y+D SI+TNGLNRAF
Sbjct: 457 NKRLDLACQLLRRELWVHLRHAQRRMVKIMQRHLSGDGDLQVLDHYVDTSIVTNGLNRAF 516
Query: 1672 STGSWCHSYKRTERCSGVVATRRTTNPLQMISDLRKTRWRVSYAGKAGDARYPNPSFWGK 1851
STGSWCH YK ERCSG+V R TNPLQM+SDLRKTR +Y G AGDARYPNPS+WGK
Sbjct: 517 STGSWCHPYKY-ERCSGIVGNLRRTNPLQMMSDLRKTRQLSAYFGNAGDARYPNPSYWGK 575
Query: 1852 LCFLSTTDGENCGFVKNLAATAIVSSKFTAPGLDKLVSCGMXXXXXXXXXXXXXXXXVFL 2031
LCFLST DGE CGFVKNLA TA+VSS P +D VSCGM FL
Sbjct: 576 LCFLSTPDGEKCGFVKNLAVTAVVSSVMRKPLMDLFVSCGMKKLNEVRVQELHGTDKTFL 635
Query: 2032 DGCWVGVCEDADSFVTNLREMRRKKQIHSQVEIKKDKHQKEVRIFCDVGRILRPLLIVEN 2211
+G +GVC + FVT+LR MRR +I QVEIK+D KEVR+F D GRILRPLLIVEN
Sbjct: 636 NGNLIGVCANPGEFVTHLRNMRRSNKIDRQVEIKRDMQHKEVRVFSDAGRILRPLLIVEN 695
Query: 2212 LKKISNLK--GGIRSFQSLMDXXXXXXXXXXXXXDCRTAWGIRYLFEKKDNQPIVNYTHC 2385
LK ++ +K G SFQ L+D D R A IR LF + + + YTHC
Sbjct: 696 LKSMTTIKQKNGSYSFQELVDKNIIELIGVEEEEDIRCACAIRDLFSGDNEEGFLYYTHC 755
Query: 2386 EXXXXXXXXXXCGIIPFANHNLARRVLYQAEKHSQQAIGFSTTNPNIRVDTLTHQLYYPQ 2565
E CGIIPFANHN ARRVL QAEK SQQAIG+S+TN RVDTL HQ+YYPQ
Sbjct: 756 ELDPSFLLGLSCGIIPFANHNNARRVLMQAEKLSQQAIGYSSTNSQYRVDTLFHQMYYPQ 815
Query: 2566 KPLCRTVLAECLGEADLSLGRSEGIARPE---YFNGQCAIVAVNVHLGYNQEDSIVINRS 2736
KPL +TV+A+C+G++D + G + RPE YFNGQ AIV+++VH G+NQEDS+V NR
Sbjct: 816 KPLFKTVVADCIGKSDHNFGEEDDFTRPENFPYFNGQNAIVSISVHQGFNQEDSLVFNRG 875
Query: 2737 SLERGMFRSEHLRSYKADIENVEITKFKKLKDKVEFGKMQSKKGRVDSLDDDGFPYIGAN 2916
SLERGMFR++H +SYK IEN E+T+ K ++K++FGK QSK+GRVDSLD DG PYIGA+
Sbjct: 876 SLERGMFRTQHFKSYKTQIENKEVTRRLKYREKIDFGKTQSKRGRVDSLDIDGLPYIGAS 935
Query: 2917 LHSGDIVIGKVAESGEDYGTKLKHTEKGMVHKVVLSANDEGKSFAAVTLREIRSPCVGDK 3096
L SGDIVIGKV+ESGED+ KL HTEKGMV KVVLSAND+GK+ A VTLR++RSPCVGDK
Sbjct: 936 LQSGDIVIGKVSESGEDHSMKLMHTEKGMVEKVVLSANDDGKNSAVVTLRQVRSPCVGDK 995
Query: 3097 FSSMHGQKGVIGLLESQENFPFTRQGIVPDIVINPHAFPTRQTPGQLLEAALAKGIACGG 3276
F+SMHGQKGV+GLL+SQENFPFT QGIVPDIVINPH FPTRQTPGQLLEAAL KGIA GG
Sbjct: 996 FASMHGQKGVVGLLDSQENFPFTFQGIVPDIVINPHGFPTRQTPGQLLEAALGKGIALGG 1055
Query: 3277 TTKYATPFTTPSIDVITEQLHRAGYQRWGSERFLSGRTGEMMKSLIFIGPTFYQRLTHMA 3456
T+YATPFTTPS+DVITEQLH+AG+ RWG E L+G+ GE M+SL+F+GP FYQRL HMA
Sbjct: 1056 MTRYATPFTTPSVDVITEQLHKAGFSRWGGESVLNGQNGERMQSLVFMGPAFYQRLHHMA 1115
Query: 3457 EDKVKFRNIGPVHPVTRQPVADRKRFGGVKFGEMERDCMLAHGAAANLHERLFLLSDLSQ 3636
DKVK RN GPVHP+TRQPV D+KRFGGVKFGEMERDC+LAHGA AN+HERLF +SDLS+
Sbjct: 1116 VDKVKLRNTGPVHPLTRQPVEDKKRFGGVKFGEMERDCLLAHGATANVHERLFRVSDLSE 1175
Query: 3637 MHICQSCKRVANVIQRPVQGGNKIRAPYCCFCKSGENIVRVNVPYGAKLLYQELFSMGIC 3816
MHICQ+C+RVANVI R +GG K+ PYC FCKS ENI+RVNVPYGA LLY+ELF MGIC
Sbjct: 1176 MHICQACQRVANVILRS-EGGKKVHGPYCGFCKSAENILRVNVPYGASLLYKELFCMGIC 1234
Query: 3817 LKFETEI 3837
LKFETE+
Sbjct: 1235 LKFETEV 1241
>ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a [Solanum
lycopersicum]
Length = 1217
Score = 1471 bits (3807), Expect = 0.0
Identities = 738/1204 (61%), Positives = 901/1204 (74%), Gaps = 11/1204 (0%)
Frame = +1
Query: 262 EQSPNGSDADMEFTMEDF--VNEKDKGESMNLDSPSKEMDNLGANVGG--LEKFCKEAAR 429
E+ NGS M+F ++D V++ D E + D L +G L+ FCK+A+
Sbjct: 17 EKISNGSTR-MDFDIDDLFEVDDDDWDEDEDEDEDDSHDMVLIKELGESFLKNFCKKAST 75
Query: 430 AFFTEQGFISHQINSYNDFIDHGLQDLFDSIGEVTVDPDYDPSKKRGFEWRYASVTFGKV 609
FF + G ISHQINSYNDFI++G+Q +FDS+GE+ V+P YDPSK+ +W++ASV FGKV
Sbjct: 76 GFFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKRGDGDWKHASVKFGKV 135
Query: 610 RVEKPTFWTG---GADVAEECVKLLPRHARLQHMTYSAQMKVEVRVQVYIQE--KSDKAK 774
+E+P FW G D +E + LLPRHARLQ+MTYSA++ VE VQVY ++ +SDK K
Sbjct: 136 TLERPKFWAGEKFSVDGGKEYLDLLPRHARLQNMTYSARIMVETHVQVYTKKLVRSDKFK 195
Query: 775 TGKDSYIQKRILSDEKREIIIGRIPVMVKSNLCWLHTLDKSDCFFDFGGYFLVKGAEKAF 954
TG D ++ K ++KR+++IGRIPVMV S LCW++ +DK DC FD GGYF+VKGAEK F
Sbjct: 196 TGVDRFVDKEWEVEDKRDVLIGRIPVMVNSELCWMNGVDKLDCEFDHGGYFIVKGAEKTF 255
Query: 955 IAQEERCTTRLWVAEKPSWTITYQSEMRRRGNFNVKLVES-SAEGFSGEKVVNGSFLFAQ 1131
IAQE+ C RLWV+ P+W + Y+ +R+ + +KL E+ E G + ++ A+
Sbjct: 256 IAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVY-IKLTETLKLEHIKGGEKALSVYILAE 314
Query: 1132 MPVWIMFFALGASSDKEVFQMIDLEGCQSNMVNILRATIRDAEGKCCDFRKGEKAKEFVY 1311
MP+W++FFALG SSD+EV +ID++ + +VNIL A+I +A+ C DFRKG+KA +V
Sbjct: 315 MPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCEDFRKGKKALAYVD 374
Query: 1312 EQLKSTKFPPSESLDDCINAFLFPKVVGHKQKAFFLGYMVKCLLLACFGKRKCDNKDDFX 1491
+K+ KFPP ES+++CINA+LFP + G KQKA FLGYMVKCLL + G+RK DN+DDF
Sbjct: 375 RLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHSFIGRRKVDNRDDFR 434
Query: 1492 XXXXXXXXXXXXXXMWSHVRHAQRSMVRAMQRDLRGDRDLQFIERYLDASIITNGLNRAF 1671
+ +H++HA+R MV+AMQRDL GDR +Q IE YLDASIITNGL+RAF
Sbjct: 435 NKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHYLDASIITNGLSRAF 494
Query: 1672 STGSWCHSYKRTERCSGVVATRRTTNPLQMISDLRKTRWRVSYAGKAGDARYPNPSFWGK 1851
STG WCH YKR ER SGVVAT R TNPLQM +D+RK+R +V+Y GK GDARYP+PS WGK
Sbjct: 495 STGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTGKVGDARYPHPSHWGK 554
Query: 1852 LCFLSTTDGENCGFVKNLAATAIVSSKFTAPGLDKLVSCGMXXXXXXXXXXXXXXXXVFL 2031
LCFLST DGENCG VKNLA+ +VS+ P L+ L CGM V L
Sbjct: 555 LCFLSTPDGENCGLVKNLASMGLVSTIILKPFLETLFRCGMQKLVDDCSTSLHGKQKVLL 614
Query: 2032 DGCWVGVCEDADSFVTNLREMRRKKQIHSQVEIKKDKHQKEVRIFCDVGRILRPLLIVEN 2211
DG WVGVCED+ FV+ LR RR+ ++ QVE+K+D+ Q EVRIF D GRILRPLL+V N
Sbjct: 615 DGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRIFSDPGRILRPLLVVSN 674
Query: 2212 LKKISNLKGGIRSFQSLMDXXXXXXXXXXXXXDCRTAWGIRYLFEKKDNQPIVNYTHCEX 2391
LKKI LKGG FQSL+D DCRTAWG+ Y+ + P YTHCE
Sbjct: 675 LKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEYILKADKENPPAKYTHCEL 734
Query: 2392 XXXXXXXXXCGIIPFANHNLARRVLYQAEKHSQQAIGFSTTNPNIRVDTLTHQLYYPQKP 2571
CGIIPFANH+ ARRVLYQ+EKHSQQAIGFST NPN RVDT THQLYYPQ+P
Sbjct: 735 DMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNNRVDTNTHQLYYPQRP 794
Query: 2572 LCRTVLAECLGEADLSLGRSEGIARPEYFNGQCAIVAVNVHLGYNQEDSIVINRSSLERG 2751
L RT+LA+ LG+ + + + RPEYFNGQCAIVAVNVHLGYNQEDS+V+NR+SLERG
Sbjct: 795 LFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLERG 854
Query: 2752 MFRSEHLRSYKADIENVE-ITKFKKLKDKVEFGKMQSKKGRVDSLDDDGFPYIGANLHSG 2928
MFRSEH+RSYKA+++N E + K K++D V FGK QSK GRVDSLDDDGFP+IGANL SG
Sbjct: 855 MFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRVDSLDDDGFPFIGANLQSG 914
Query: 2929 DIVIGKVAESGEDYGTKLKHTEKGMVHKVVLSANDEGKSFAAVTLREIRSPCVGDKFSSM 3108
DI+IGK +ESG D+ KLKHTE+GMV KV+LSANDEGK+FA V+LR++RSPC+GDKFSSM
Sbjct: 915 DIIIGKFSESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVVSLRQVRSPCLGDKFSSM 974
Query: 3109 HGQKGVIGLLESQENFPFTRQGIVPDIVINPHAFPTRQTPGQLLEAALAKGIACGGTTKY 3288
HGQKGV+G LESQENFPFT QGIVPDIVINPHAFP+RQTPGQLLEAAL KGIA GG KY
Sbjct: 975 HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGGQKY 1034
Query: 3289 ATPFTTPSIDVITEQLHRAGYQRWGSERFLSGRTGEMMKSLIFIGPTFYQRLTHMAEDKV 3468
ATPF+T S+D I EQL G+ RWG+ER +GRTGEM+ SLIF+GPTFYQRL HMAEDKV
Sbjct: 1035 ATPFSTLSVDAIMEQLQGRGFTRWGNERVYNGRTGEMVHSLIFMGPTFYQRLIHMAEDKV 1094
Query: 3469 KFRNIGPVHPVTRQPVADRKRFGGVKFGEMERDCMLAHGAAANLHERLFLLSDLSQMHIC 3648
KFRN GPVHP+TRQPVADRKRFGG+KFGEMERDC++AHGAAANLHERLF LSD SQMHIC
Sbjct: 1095 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHIC 1154
Query: 3649 QSCKRVANVIQRPVQGGNKIRAPYCCFCKSGENIVRVNVPYGAKLLYQELFSMGICLKFE 3828
CK +ANVIQR VQGG K+R P+C FC+S E+IV+VNVPYGAKLL QELFSMGI LKF+
Sbjct: 1155 GKCKNMANVIQRTVQGG-KVRGPFCRFCESVEDIVKVNVPYGAKLLCQELFSMGISLKFD 1213
Query: 3829 TEIC 3840
TEIC
Sbjct: 1214 TEIC 1217